<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 09:55:36"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E269004" ref_strand="+" ref_description="SGN-E269004 [cLEI-16-K4]">
      <seq>aattacagacttgaccaaagcgttggaatttgagccagactctgccgatctattacatgaaagaggaattgtcaattttaagtttaaagatttcaaaggtgctgttgaagacctctctacatgtgtaaagtccgataaggataataaatctgcgtatacatatttgggtttggcgttatactctctaggagaatataggaaggctgaggaggcacataagaaagcaatccaaattgaaaggaatttcctcgaggcttgggctcatctagcacagttttatcaagacctagcaaactcagagaaggccttggaatgccttcatcagattttgcaaatagatgggaggtacgcgaaagcatatcacctgcgcgggctgctacttcatggaatgggagagcataggaatgctataaaagatttatcaatggggttggctattgatagcgcaaacattgaatgcttgtatctacgagcttcttgctatcatgctattggattatataaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="2747" stop="297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2447" g_stop="2383" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2382" i_stop="2064" i_length="319">
            <donor d_prob="0.956" d_score="0.98"/>
            <acceptor a_prob="0.792" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2063" g_stop="1963" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="166" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1962" i_stop="1830" i_length="133">
            <donor d_prob="0.137" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1829" g_stop="1722" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="274" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1721" i_stop="1103" i_length="619">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1102" g_stop="1032" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="345" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1031" i_stop="888" i_length="144">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="887" g_stop="831" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="402" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="830" i_stop="702" i_length="129">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="701" g_stop="597" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="507" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E269004" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2447" e_stop="2383"/>
          <exon e_start="2063" e_stop="1963"/>
          <exon e_start="1829" e_stop="1722"/>
          <exon e_start="1102" e_stop="1032"/>
          <exon e_start="887" e_stop="831"/>
          <exon e_start="701" e_stop="597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTACAGACTTGACCAAAGCGTTGGAATTTGAGCCAGACTCTGCCGATATATTACATGAAAGAGGTGACGAGACTGAACTCTTCCATTTACTATGAACAATTGGATTTATGCTGTTAAAGTAGATAGACATAAATAGCAAAACATACATTTTATGACAGATAGCTTTTGTGCATGTAATTTGAAACTAAGGTTCACTTTCATCTTTACAACACTGAGATTATTTATTGAGGCCCATAGGTGGTTTCATCTTGTAACTATTTTGCAATAAATGACCTCTAGCGGAATATTCCATAATTTCTTGAGATTTCAGAAAAGATCATTTGATTGGACAAAGTTTGTTCAATCTAACCTGGGAGTCACTAACTCTCCTTAATTAGTGCAGGAATTGTCAATTTTAAGTTTAAAGATTTCAAAGGTGCTGTTGAAGACCTCTCTACATGTGTAAAGTCCGATAAGGATAATAAATCTGCGTATACATATTTGGTGAGTCTATGACCTTGAGTCTACCAATTGTTGTAGAATGAGCTAAGAATGTTTATCCGCAAAAGTTTGAGAAATTTTTTGTTGGAAAAATACTGATATAATGCTGGTCGAAAAAAATTTGGAAAATTATCAGGGTTTGGCGTTATACTCTCTAGGAGAATATAGGAAGGCTGAGGAGGCACATAAGAAAGCAATCCAAATTGAAAGGAATTTCCTCGAGGCTTGGGCTCATCTAGCACAGGTATCTCTGAATATATGGTGAATACTCTTAATGCTATTTTTCCTGCCAAGTGGGATCCCAATACTTCTATTGGTAGTGCTGATGATATAGAGTTTCTTGATGATGAAGTTGCCTTTTGACTTCGAGAATTTTCTTATACCAAGTTCTTGTTTTTGTTTGTCTCTTTTTTCACCGGTATCTGGAACTCAAGGTTGAGGTAAATATATACTTCTGCATGCAAGTTAAGAAATTCAAGAATAAGGATTTAAATGGCAAGTAGACATTCTATTGCTTAACCAGTGATGAAGAGCCTAACTCTCTGTTATCAGATATTGTGTGAGCGTTCATCTTCTGGGGTGCAATGCACATGTATTGTAATAGCTTTTGCCTTGTTGCATTTTCAGATAAGGTCTCCTGATTAGCTGGTAGATGTTATTAATTTACATCATCAAATTGGATGTTTATGGAATATCTATTGCCATAAGTTTAAAATTCCTAAGACTCAGGAGCTGCTCTAACCTAGTTCTTGATTGGTTGAGTTTCTTCACTTATATTAAATGTGGCAAAACAATGAGATCTCTTTGAAGATATTTTTTTAATGATGTATTTGATTATTGAAGAATCTTTATCTTTGGTGCAGTTTTATCAAGACCTAGCAAACTCAGAGAAGGCCTTGGAATGCCTTCATCAGATTTTGCAAATAGATGGGAGGTGATTACTGAGGATCTCAATATTTACATCTTTTTCACCGATAAATATCTAATCTCGAGTATTTGAATGGTGAAGTATAAAACCTATCCTCAAATAGGAATATAACTGATAATCCATCCTCTATCTACCCTTTTTCGTTGGAAGGTACGCGAAAGCATATCACCTGCGCGGGCTGCTACTTCATGGAATGGGAGAGCATAGGTACATATTTCTGAAAAATTTTGCTGTCCTGAGTCTCCCCTTTCTCTCTTTTTTGTCAAATTTTCTATGTATAATCCTCTTTTAACGAAAAATGTAGCAGGCCTTAACTGCCTATATATGCTGTTACAGGAATGCTATAAAAGATTTATCAATGGGGTTGGCTATTGATAGCGCAAACATTGAATGCTTGTATCTACGAGCTTCTTGCTATCATGCTATTGGATTATATAAAGA</genome_strand>
        <mrna_strand>AATTACAGACTTGACCAAAGCGTTGGAATTTGAGCCAGACTCTGCCGATCTATTACATGAAAGAG...............................................................................................................................................................................................................................................................................................................................GAATTGTCAATTTTAAGTTTAAAGATTTCAAAGGTGCTGTTGAAGACCTCTCTACATGTGTAAAGTCCGATAAGGATAATAAATCTGCGTATACATATTTG.....................................................................................................................................GGTTTGGCGTTATACTCTCTAGGAGAATATAGGAAGGCTGAGGAGGCACATAAGAAAGCAATCCAAATTGAAAGGAATTTCCTCGAGGCTTGGGCTCATCTAGCACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATCAAGACCTAGCAAACTCAGAGAAGGCCTTGGAATGCCTTCATCAGATTTTGCAAATAGATGGGAG................................................................................................................................................GTACGCGAAAGCATATCACCTGCGCGGGCTGCTACTTCATGGAATGGGAGAGCATAG.................................................................................................................................GAATGCTATAAAAGATTTATCAATGGGGTTGGCTATTGATAGCGCAAACATTGAATGCTTGTATCTACGAGCTTCTTGCTATCATGCTATTGGATTATATAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E377069" ref_strand="+" ref_description="SGN-E377069 [TUS-21-E3](-)">
      <seq>cagttggcagcaacaatcattcggtgcagtcatctggccctgagtccaacactggacctcctctttctaccaaatctggtgaaacttgtgatattagtaaggcctcagatagggaacttaaaacatgcagcagtgggatgttggaaagctctgagaaatcaaagaatagctctgttttacaaaattcctcaagtaataattccaaaaagcataagaagattgagtctgaatcaaaggaattgcatgagagacaagcaaataaaaccaacaacaattgcaaaaaattgggttatccatctctggtttgcagtgagttaagtgatatatctgaagacagtaggaaatcatctgcagtaactagtgaatcaagtgaacagtcagaaccaaatgagttgcaggaaattctcagtcagttgaataataaatgtgatgttcgcgttgaattgagtgatgaaggcaagagaaacaaaaaattttgtgttaccagggtcaacaaaaccaagtccattaacgttgatttccgattatcaaggggaatagcacaggtactgggataccatgctcatgcatagcaggaaaggccttctactgcagtcttcatgtcttttctgttcactttgcttatttcagttgtaatttggtgattacactccacttttaattttgtgaacttaactggaagattctgcatatgttcaaagcttgggtcaactaagctctattattagaattcattttcttcagttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="8187" stop="6606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7887" g_stop="7343" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7342" i_stop="7108" i_length="235">
            <donor d_prob="0.832" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7107" g_stop="6905" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="748" r_length="203" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E377069" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7887" e_stop="7343"/>
          <exon e_start="7107" e_stop="6905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTGGCAGCAACAATCATTCGGTGCAGTCATCTGGCCCTGAGTCCAACACTGGACCTCCTCTTTCTACCAAATCTGGTGAAACTTGTGATATTAGTAAGGCCTCAGATAGGGAACTTAAAACATGCAGCAGTGGGATGTTGGAAAGCTCTGAGAAATCAAAGAATAGCTCTGTTTTACAAAATTCCTCAAGTAATAATTCCAAAAAGCATAAGAAGATTGAGTCTGAATCAAAGGAATTGCATGAGAGACAAGCAAATAAAACCAACAACAATTGCAAAAAATTGGGTTATCCATCTCTGGTTTGCAGTGAGTTAAGTGATATATCTGAAGACAGTAGGAAATCATCTGCAGTAACTAGTGAATCAAGTGAACAGTCAGAACCAAATGAGTTGCAGGAAATTCTCAGTCAGTTGAATAATAAATGTGATGTTCGCGTTGAATTGAGTGATGAAGGCAAGAGAAACAAAAAATTTTGTGTTACCAGGGTCAACAAAACCAAGTCCATTAACGTTGATTTCCGATTATCAAGGGGAATAGCACAGGTACACTGCCTATCCTGTGATATTACAATGAAGACAGGAAGAATTAGTCCATCTATTGATATTTCCTGTTAGTGCGGTTGATCATTAATATGCTATTCTTCTTTATTGAAATACAAATAACAATACATTTGTAACTTCAAATATATGCCAAAGATCAACTTCATGTCTCAATTTGTGAGATTATTTTCTCTCAAATTAAGTAGAGAAATGAATTTTTTCTTGATATATCTGCTAGGTACTGGGATACCATGCTCATGCATAGCAGGAAAGGCCTTCTACTGCAGTCTTCATGTCTTTTCTGTTCACTTTGCTTATTTCAGTTGTAATTTGGTGATTACACTCCACTTTTAATTTTGTGAACTTAACTGGAAGATTCTGCATATGTTCAAAGCTTGGGTCAACTAAGCTCTATTATTAGAATTCATTTTCTTCAGTTAC</genome_strand>
        <mrna_strand>CAGTTGGCAGCAACAATCATTCGGTGCAGTCATCTGGCCCTGAGTCCAACACTGGACCTCCTCTTTCTACCAAATCTGGTGAAACTTGTGATATTAGTAAGGCCTCAGATAGGGAACTTAAAACATGCAGCAGTGGGATGTTGGAAAGCTCTGAGAAATCAAAGAATAGCTCTGTTTTACAAAATTCCTCAAGTAATAATTCCAAAAAGCATAAGAAGATTGAGTCTGAATCAAAGGAATTGCATGAGAGACAAGCAAATAAAACCAACAACAATTGCAAAAAATTGGGTTATCCATCTCTGGTTTGCAGTGAGTTAAGTGATATATCTGAAGACAGTAGGAAATCATCTGCAGTAACTAGTGAATCAAGTGAACAGTCAGAACCAAATGAGTTGCAGGAAATTCTCAGTCAGTTGAATAATAAATGTGATGTTCGCGTTGAATTGAGTGATGAAGGCAAGAGAAACAAAAAATTTTGTGTTACCAGGGTCAACAAAACCAAGTCCATTAACGTTGATTTCCGATTATCAAGGGGAATAGCACAG...........................................................................................................................................................................................................................................GTACTGGGATACCATGCTCATGCATAGCAGGAAAGGCCTTCTACTGCAGTCTTCATGTCTTTTCTGTTCACTTTGCTTATTTCAGTTGTAATTTGGTGATTACACTCCACTTTTAATTTTGTGAACTTAACTGGAAGATTCTGCATATGTTCAAAGCTTGGGTCAACTAAGCTCTATTATTAGAATTCATTTTCTTCAGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E367836" ref_strand="+" ref_description="SGN-E367836 [TUS-22-I11](-)">
      <seq>agttggcagcaacaatcattcggtgcagtcatctggccctgagtccaacactggacctcctctttctaccaaatctggtgaaacttgtgatattagtaaggcctcagatagggaacttaaaacatgcagcagtgggatgttggaaagctctgagaaatcaaagaatagctctgttttacaaaattcctcaagtaataattccaaaaagcataagaagattgagtctgaatcaaaggaattgcatgagagacaagcaaataaaaccaacaacaattgcaaaaaattgggttatccatctctggtttgcagtgagttaagtgatatatctgaagacagtaggaaatcatctgcagtaactagtgaatcaagtgaacagtcagaaccaaatgagttgcaggaaattctcagtcagttgaataataaatgtgatgttcgcgttgaattgagtgatgaaggcaagagaaacaaaaaattttgtgttaccagggtcaacaaaaccaagtccattaacgttgatttccgattatcaaggggaatagcacaggtactgggataccatgctcatgcatagcaggaaaggccttctactgcagtcttcatgtcttttctgttcactttgcttatttcagttgtaatttggtgattacactccacttttaattttgtgaacttaactggaagattctgcatatgttcaaagcttgggtcaactaagctctattattagaattcattttcttcagttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="8186" stop="6606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7886" g_stop="7343" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="544" r_length="544" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7342" i_stop="7108" i_length="235">
            <donor d_prob="0.832" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7107" g_stop="6905" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="747" r_length="203" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E367836" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7886" e_stop="7343"/>
          <exon e_start="7107" e_stop="6905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGGCAGCAACAATCATTCGGTGCAGTCATCTGGCCCTGAGTCCAACACTGGACCTCCTCTTTCTACCAAATCTGGTGAAACTTGTGATATTAGTAAGGCCTCAGATAGGGAACTTAAAACATGCAGCAGTGGGATGTTGGAAAGCTCTGAGAAATCAAAGAATAGCTCTGTTTTACAAAATTCCTCAAGTAATAATTCCAAAAAGCATAAGAAGATTGAGTCTGAATCAAAGGAATTGCATGAGAGACAAGCAAATAAAACCAACAACAATTGCAAAAAATTGGGTTATCCATCTCTGGTTTGCAGTGAGTTAAGTGATATATCTGAAGACAGTAGGAAATCATCTGCAGTAACTAGTGAATCAAGTGAACAGTCAGAACCAAATGAGTTGCAGGAAATTCTCAGTCAGTTGAATAATAAATGTGATGTTCGCGTTGAATTGAGTGATGAAGGCAAGAGAAACAAAAAATTTTGTGTTACCAGGGTCAACAAAACCAAGTCCATTAACGTTGATTTCCGATTATCAAGGGGAATAGCACAGGTACACTGCCTATCCTGTGATATTACAATGAAGACAGGAAGAATTAGTCCATCTATTGATATTTCCTGTTAGTGCGGTTGATCATTAATATGCTATTCTTCTTTATTGAAATACAAATAACAATACATTTGTAACTTCAAATATATGCCAAAGATCAACTTCATGTCTCAATTTGTGAGATTATTTTCTCTCAAATTAAGTAGAGAAATGAATTTTTTCTTGATATATCTGCTAGGTACTGGGATACCATGCTCATGCATAGCAGGAAAGGCCTTCTACTGCAGTCTTCATGTCTTTTCTGTTCACTTTGCTTATTTCAGTTGTAATTTGGTGATTACACTCCACTTTTAATTTTGTGAACTTAACTGGAAGATTCTGCATATGTTCAAAGCTTGGGTCAACTAAGCTCTATTATTAGAATTCATTTTCTTCAGTTAC</genome_strand>
        <mrna_strand>AGTTGGCAGCAACAATCATTCGGTGCAGTCATCTGGCCCTGAGTCCAACACTGGACCTCCTCTTTCTACCAAATCTGGTGAAACTTGTGATATTAGTAAGGCCTCAGATAGGGAACTTAAAACATGCAGCAGTGGGATGTTGGAAAGCTCTGAGAAATCAAAGAATAGCTCTGTTTTACAAAATTCCTCAAGTAATAATTCCAAAAAGCATAAGAAGATTGAGTCTGAATCAAAGGAATTGCATGAGAGACAAGCAAATAAAACCAACAACAATTGCAAAAAATTGGGTTATCCATCTCTGGTTTGCAGTGAGTTAAGTGATATATCTGAAGACAGTAGGAAATCATCTGCAGTAACTAGTGAATCAAGTGAACAGTCAGAACCAAATGAGTTGCAGGAAATTCTCAGTCAGTTGAATAATAAATGTGATGTTCGCGTTGAATTGAGTGATGAAGGCAAGAGAAACAAAAAATTTTGTGTTACCAGGGTCAACAAAACCAAGTCCATTAACGTTGATTTCCGATTATCAAGGGGAATAGCACAG...........................................................................................................................................................................................................................................GTACTGGGATACCATGCTCATGCATAGCAGGAAAGGCCTTCTACTGCAGTCTTCATGTCTTTTCTGTTCACTTTGCTTATTTCAGTTGTAATTTGGTGATTACACTCCACTTTTAATTTTGTGAACTTAACTGGAAGATTCTGCATATGTTCAAAGCTTGGGTCAACTAAGCTCTATTATTAGAATTCATTTTCTTCAGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E419696" ref_strand="+" ref_description="SGN-E419696 [STM-30-E21]">
      <seq>cattttttttctgaagctgatctttccttatatttgaagttacaaatgtattgttatttgtatttcaataaagaggaatagcatattaatgatcaaccgcactaacaggaattatcaatagatggactaattcttcctgtcttcattgtaatatcacaggataggcagtgtacctgtgctattccccttgataatcggaaatcaacattaatggacttggttttgttaaccctggcaacacagaattttttgtttctcttgccttcatcactcaattcaacgcgaacatcacatttattattcaactgactgagaatttcctgcaactcatttggttctgactgttcacttgattcactagttactgcagatgatttcccactgtcttcagatatatcacttaactcactgcaaaccagagatggataacccaattttttgcaattggtggtgggtctatttgcttggctctcatgcaattcctttggttcacactcaatcttcttatgctttttggcattattacttgaggaattttgtagaacagaactattatttgatttctcagaactttccaacatcccact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="6880" stop="8056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7168" g_stop="7756" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E419696" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E419696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7168" e_stop="7756"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTGAGACATGAAGTTGATCTTTGGCATATATTTGAAGTTACAAATGTATTGTTATTTGTATTTCAATAAAGAAGAATAGCATATTAATGATCAACCGCACTAACAGGAAATATCAATAGATGGACTAATTCTTCCTGTCTTCATTGTAATATCACAGGATAGGCAGTGTACCTGTGCTATTCCCCTTGATAATCGGAAATCAACGTTAATGGACTTGGTTTTGTTGACCCTGGTAACACAAAATTTTTTGTTTCTCTTGCCTTCATCACTCAATTCAACGCGAACATCACATTTATTATTCAACTGACTGAGAATTTCCTGCAACTCATTTGGTTCTGACTGTTCACTTGATTCACTAGTTACTGCAGATGATTTCCTACTGTCTTCAGATATATCACTTAACTCACTGCAAACCAGAGATGGATAACCCAATTTTTTGCAATTGTTGTTGGTTTTATTTGCTTGTCTCTCATGCAATTCCTTTGATTCAGACTCAATCTTCTTATGCTTTTTGGAATTATTACTTGAGGAATTTTGTAAAACAGAGCTATTCTTTGATTTCTCAGAGCTTTCCAACATCCCACT</genome_strand>
        <mrna_strand>CATTTTTTTTC-TGAAGCTGATCTTT-CCTTATATTTGAAGTTACAAATGTATTGTTATTTGTATTTCAATAAAGAGGAATAGCATATTAATGATCAACCGCACTAACAGGAATTATCAATAGATGGACTAATTCTTCCTGTCTTCATTGTAATATCACAGGATAGGCAGTGTACCTGTGCTATTCCCCTTGATAATCGGAAATCAACATTAATGGACTTGGTTTTGTTAACCCTGGCAACACAGAATTTTTTGTTTCTCTTGCCTTCATCACTCAATTCAACGCGAACATCACATTTATTATTCAACTGACTGAGAATTTCCTGCAACTCATTTGGTTCTGACTGTTCACTTGATTCACTAGTTACTGCAGATGATTTCCCACTGTCTTCAGATATATCACTTAACTCACTGCAAACCAGAGATGGATAACCCAATTTTTTGCAATTGGTGGTGGGTCTATTTGCTTGGCTCTCATGCAATTCCTTTGGTTCACACTCAATCTTCTTATGCTTTTTGGCATTATTACTTGAGGAATTTTGTAGAACAGAACTATTATTTGATTTCTCAGAACTTTCCAACATCCCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735876" ref_strand="+" ref_description="SGN-E735876 [LC03CA02]">
      <seq>accacgcataaaagaaaaaaaagaaaaacagttttacagccgcaagatcagaagttcagaagctcacaacacaactgaaaggaaaaaaaaataaaaaatcaatcgcatcaattgagctgcttccgatccacttgagccgccggcgatggcgtcgaaagttactgataggattgaactagctaagctttgtagctctaaggagtggtcgaaagcaattcgaattctcgattctcttcttgctcaaacttgcgtcattcaagatatctgcaaccgagcgttttgctatagtcaattggagcttcacaagcatgttattaaggattgtgataaggcacttcagctcgatcctgagcttcttcaagcttatatattcaaaggacgtgcattatctgctcttggtaagaaagaggaagctcttctagtttgggagcaagggtatgaacatgcagttcatcagtccgcagacttaaagcaactgttagagcttgaagagctgctcaaaattgcaaagcagaacaccgcagttggcagcaacaatcattcggtgcagtcatctggccctgagtccaacactggacctcctctttctaccaaatctggtgaaacttgtgatattagtaaggccctcgatagggaacttaaaacatgccacaatgggatgttggaaagctctgaaaaatcaaagaatacctctgttttacaaaattcctcaagtaataattcccaaaaacataagaagattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="9740" stop="7365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9441" g_stop="9174" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9173" i_stop="9058" i_length="116">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9057" g_stop="8948" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="377" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8947" i_stop="8032" i_length="916">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8031" g_stop="7665" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="744" r_length="367" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E735876" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9441" e_stop="9174"/>
          <exon e_start="9057" e_stop="8948"/>
          <exon e_start="8031" e_stop="7665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCACCAAAAAAAAGAAAAAAAAGAAAAACAGTTTTACAGCCGCAAGATCAGAAGTTCAGAAGCTCACAACACAACTGAAAGGAAAAAAAAATAAAAAATCAATCGCATCAATTGAGCTGCTTCCGATCCACTTGAGCCGCCGGCGATGGCGTCGAAAGTTACTGATAGGATTGAACTAGCTAAGCTTTGTAGCTCTAAGGAGTGGTCGAAAGCAATTCGAATTCTCGATTCTCTTCTTGCTCAAACTTGCGTCATTCAAGATATCTGGTCCGTTACGTTTTTCACTGTTCCATCTTTTTCCCTGTTTGTATATAGGTTTTTGGACATTTATGAATGAACTGATTAATTTTTCTGAATTTAAAATGTGTTCAATTCTTTTTCAGCAACCGAGCGTTTTGCTATAGTCAATTGGAGCTTCACAAGCATGTTATTAAGGATTGTGATAAGGCACTTCAGCTCGATCCTAAGCTTCTTCAAGCTTATATATTCAAAGGTTCTTTTCATTTTCTCCTTGCATTTCCAGCTAACTGTTTTTACCGTGTATAAGAAATGCGAAAGAGAATTTAGAAGTTTTCAATTGCATTTGGAATGTCAATTTTGAATGTGGATGTGTTGTGGTCAGGCATCCTAATCCCTATAGGCCTGTGAAGTCATCTGGGATACTCTAAATTTACAATTTTAGGGTTCTTGTTCAAATTTAGGTGATTGGCTATAATTGAGTAAATTTTTCTGGTTTTGGACAAACATGAACCATTGGTAATTTCGAGGAGTAGGATGAAGCTCTTGTAAAGCTAGTGAACTGTTGCACCTCTCGGTTGATGTCCTACAATTTACGACTATTGTCAAGTATGCGCCAAAATAAGGGTTAGCTTTAAATGAATTGTGTATGTGAGAAGCCATTTTAAGCTTGATAAAGGTCATATTGGACTTGCTTTCTGTATCCTATAGTGGTCTTATATTATATTTTTGAAATGACTTTTAACTTTAAAATAAACTATGTTTGGTTGGGGTATAAAGGGAAGGGATGGAAAATAAAGGAGGGCATAAGATGGTTGAATTCTATGCTCGCGGGGTACAGTAGAGGGTTTGACCATATTGTGTCTATTGTTAAGTACCTTTTCTCTAAAAGGCTATTTCCACGGCATGAACGTGTGACCTCCTTGTATCATTGCAACAACTCCGATCAGATAAAAAGATCAAATACATTTTTGTCTCTTGTGTGTAACATAGCCCTTGAAATAATGATATAAGAATTTGAATTAACAATATTCTTGTGTGGATACTGTGGATTTTCCCTAGATGTGGTTATAGTTTATGCTGCAGAAATTTCAATATTCTTAAAGCTTTACAAACTGGATTTTTGAGTTTGAAGCATTATGTAACAAAGTTACTTGATACTTGTTGCTTAGGACGTGCATTATCTGCTCTTGGTAAGAAAGAGGAAGCTCTTCTAGTTTGGGAGCAAGGGTATGAACATGCAGTTCATCAGTCCGCAGACTTAAAGCAACTGTTAGAGCTTGAAGAGCTGCTCAAAATTGCAAAGCAGAACACCGCAGTTGGCAGCAACAATCATTCGGTGCAGTCATCTGGCCCTGAGTCCAACACTGGACCTCCTCTTTCTACCAAATCTGGTGAAACTTGTGATATTAGTAAGGCCTCAGATAGGGAACTTAAAACATGCAGCAGTGGGATGTTGGAAAGCTCTGAGAAATCAAAGAATAGCTCTGTTTTACAAAATTCCTCAAGTAATAATTCCAAAAAGCATAAGAAGATTGA</genome_strand>
        <mrna_strand>ACCACGCATA-AAAGAAAAAAAAGAAAAACAGTTTTACAGCCGCAAGATCAGAAGTTCAGAAGCTCACAACACAACTGAAAGGAAAAAAAAATAAAAAATCAATCGCATCAATTGAGCTGCTTCCGATCCACTTGAGCCGCCGGCGATGGCGTCGAAAGTTACTGATAGGATTGAACTAGCTAAGCTTTGTAGCTCTAAGGAGTGGTCGAAAGCAATTCGAATTCTCGATTCTCTTCTTGCTCAAACTTGCGTCATTCAAGATATCTG....................................................................................................................CAACCGAGCGTTTTGCTATAGTCAATTGGAGCTTCACAAGCATGTTATTAAGGATTGTGATAAGGCACTTCAGCTCGATCCTGAGCTTCTTCAAGCTTATATATTCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGTGCATTATCTGCTCTTGGTAAGAAAGAGGAAGCTCTTCTAGTTTGGGAGCAAGGGTATGAACATGCAGTTCATCAGTCCGCAGACTTAAAGCAACTGTTAGAGCTTGAAGAGCTGCTCAAAATTGCAAAGCAGAACACCGCAGTTGGCAGCAACAATCATTCGGTGCAGTCATCTGGCCCTGAGTCCAACACTGGACCTCCTCTTTCTACCAAATCTGGTGAAACTTGTGATATTAGTAAGGCCCTCGATAGGGAACTTAAAACATGCCACAATGGGATGTTGGAAAGCTCTGAAAAATCAAAGAATACCTCTGTTTTACAAAATTCCTCAAGTAATAATTCCCAAAAACATAAGAAGATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E367837" ref_strand="+" ref_description="SGN-E367837 [TUS-22-I11]">
      <seq>aaaagaaaaaaaagaaaaacagttttacagccgcaagatcagaagttcagaagctcacaacacaactgaaaggaaaaaaaaataaaaaatcaatcgcatcaattgagctgcttccgatccacttgagccgccggcgatggcgtcgaaagttactgataggattgaactagctaagctttgtagctctaaggagtggtcgaaagcaattcgaattctcgattctcttcttgctcaaacttgcgtcattcaagatatctgcaaccgagcgttttgctatagtcaattggagcttcacaagcatgttattaaggattgtgataaggcacttcagctcgatcctaagcttcttcaagcttatatattcaaaggacgtgcattatctgctcttggtaagaaagaggaagctcttctagtttgggagcaagggtatgaacatgcagttcatcagtccgcagacttaaagcaactgttagagcttgaagagctgctcaaaattgcaaagcagaacaccgcagttggcagcaacaatcattcggtgcagtcatctggccctgagtccaacactggacctcctctttctaccaaatctggtgaaacttgtgatattagtaaggcctcagatagggaacttaaaacatgcagcagtgggatgttggaaagctctgagaaatcaaagaatagctctgttttacaaaaattctcaagtaataattccaaaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="9731" stop="7378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9431" g_stop="9174" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9173" i_stop="9058" i_length="116">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9057" g_stop="8948" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="368" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8947" i_stop="8032" i_length="916">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8031" g_stop="7678" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="722" r_length="354" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E367837" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9431" e_stop="9174"/>
          <exon e_start="9057" e_stop="8948"/>
          <exon e_start="8031" e_stop="7678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAAAAAAAAGAAAAACAGTTTTACAGCCGCAAGATCAGAAGTTCAGAAGCTCACAACACAACTGAAAGGAAAAAAAAATAAAAAATCAATCGCATCAATTGAGCTGCTTCCGATCCACTTGAGCCGCCGGCGATGGCGTCGAAAGTTACTGATAGGATTGAACTAGCTAAGCTTTGTAGCTCTAAGGAGTGGTCGAAAGCAATTCGAATTCTCGATTCTCTTCTTGCTCAAACTTGCGTCATTCAAGATATCTGGTCCGTTACGTTTTTCACTGTTCCATCTTTTTCCCTGTTTGTATATAGGTTTTTGGACATTTATGAATGAACTGATTAATTTTTCTGAATTTAAAATGTGTTCAATTCTTTTTCAGCAACCGAGCGTTTTGCTATAGTCAATTGGAGCTTCACAAGCATGTTATTAAGGATTGTGATAAGGCACTTCAGCTCGATCCTAAGCTTCTTCAAGCTTATATATTCAAAGGTTCTTTTCATTTTCTCCTTGCATTTCCAGCTAACTGTTTTTACCGTGTATAAGAAATGCGAAAGAGAATTTAGAAGTTTTCAATTGCATTTGGAATGTCAATTTTGAATGTGGATGTGTTGTGGTCAGGCATCCTAATCCCTATAGGCCTGTGAAGTCATCTGGGATACTCTAAATTTACAATTTTAGGGTTCTTGTTCAAATTTAGGTGATTGGCTATAATTGAGTAAATTTTTCTGGTTTTGGACAAACATGAACCATTGGTAATTTCGAGGAGTAGGATGAAGCTCTTGTAAAGCTAGTGAACTGTTGCACCTCTCGGTTGATGTCCTACAATTTACGACTATTGTCAAGTATGCGCCAAAATAAGGGTTAGCTTTAAATGAATTGTGTATGTGAGAAGCCATTTTAAGCTTGATAAAGGTCATATTGGACTTGCTTTCTGTATCCTATAGTGGTCTTATATTATATTTTTGAAATGACTTTTAACTTTAAAATAAACTATGTTTGGTTGGGGTATAAAGGGAAGGGATGGAAAATAAAGGAGGGCATAAGATGGTTGAATTCTATGCTCGCGGGGTACAGTAGAGGGTTTGACCATATTGTGTCTATTGTTAAGTACCTTTTCTCTAAAAGGCTATTTCCACGGCATGAACGTGTGACCTCCTTGTATCATTGCAACAACTCCGATCAGATAAAAAGATCAAATACATTTTTGTCTCTTGTGTGTAACATAGCCCTTGAAATAATGATATAAGAATTTGAATTAACAATATTCTTGTGTGGATACTGTGGATTTTCCCTAGATGTGGTTATAGTTTATGCTGCAGAAATTTCAATATTCTTAAAGCTTTACAAACTGGATTTTTGAGTTTGAAGCATTATGTAACAAAGTTACTTGATACTTGTTGCTTAGGACGTGCATTATCTGCTCTTGGTAAGAAAGAGGAAGCTCTTCTAGTTTGGGAGCAAGGGTATGAACATGCAGTTCATCAGTCCGCAGACTTAAAGCAACTGTTAGAGCTTGAAGAGCTGCTCAAAATTGCAAAGCAGAACACCGCAGTTGGCAGCAACAATCATTCGGTGCAGTCATCTGGCCCTGAGTCCAACACTGGACCTCCTCTTTCTACCAAATCTGGTGAAACTTGTGATATTAGTAAGGCCTCAGATAGGGAACTTAAAACATGCAGCAGTGGGATGTTGGAAAGCTCTGAGAAATCAAAGAATAGCTCTGTTTTACAAAATTCCTCAAGTAATAATTCCAAAAAGC</genome_strand>
        <mrna_strand>AAAAGAAAAAAAAGAAAAACAGTTTTACAGCCGCAAGATCAGAAGTTCAGAAGCTCACAACACAACTGAAAGGAAAAAAAAATAAAAAATCAATCGCATCAATTGAGCTGCTTCCGATCCACTTGAGCCGCCGGCGATGGCGTCGAAAGTTACTGATAGGATTGAACTAGCTAAGCTTTGTAGCTCTAAGGAGTGGTCGAAAGCAATTCGAATTCTCGATTCTCTTCTTGCTCAAACTTGCGTCATTCAAGATATCTG....................................................................................................................CAACCGAGCGTTTTGCTATAGTCAATTGGAGCTTCACAAGCATGTTATTAAGGATTGTGATAAGGCACTTCAGCTCGATCCTAAGCTTCTTCAAGCTTATATATTCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGTGCATTATCTGCTCTTGGTAAGAAAGAGGAAGCTCTTCTAGTTTGGGAGCAAGGGTATGAACATGCAGTTCATCAGTCCGCAGACTTAAAGCAACTGTTAGAGCTTGAAGAGCTGCTCAAAATTGCAAAGCAGAACACCGCAGTTGGCAGCAACAATCATTCGGTGCAGTCATCTGGCCCTGAGTCCAACACTGGACCTCCTCTTTCTACCAAATCTGGTGAAACTTGTGATATTAGTAAGGCCTCAGATAGGGAACTTAAAACATGCAGCAGTGGGATGTTGGAAAGCTCTGAGAAATCAAAGAATAGCTCTGTTTTACAAAAATTCTCAAGTAATAATTCCAAAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E377070" ref_strand="+" ref_description="SGN-E377070 [TUS-21-E3]">
      <seq>aaaagaaaaaaaagaaaaacagttttacagccgcaagatcagaagttcagaagctcacaacacaactgaaaggaaaaaaaaataaaaaatcaatcgcatcaattgagctgcttccgatccacttgagccgccggcgatggcgtcgaaagttactgataggattgaactagctaagctttgtagctctaaggagtggtcgaaagcaattcgaattctcgattctcttcttgctcaaacttgcgtcattcaagatatctgcaaccgagcgttttgctatagtcaattggagcttcacaagcatgttattaaggattgtgataaggcacttcagctcgatcctaagcttcttcaagcttatatattcaaaggacgtgcattatctgctcttggtaagaaagaggaagctcttctagtttgggagcaagggtatgaacatgcagttcatcagtccgcagacttaaagcaactgttagagcttgaagagctgctcaaaattgcaaagcagaacaccgcagttggcagcaacaatcattcggtgcagtcatctggccctgagtccaacactggacctcctctttctaccaaatctggtgaaacttgtgatattagtaaggcctcagatagggaacttaaaacatgcagcagtgggatgtttggaagctctgagaaatcaaagaatagctctgttttacaaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="9731" stop="7402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9431" g_stop="9174" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9173" i_stop="9058" i_length="116">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9057" g_stop="8948" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="368" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8947" i_stop="8032" i_length="916">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8031" g_stop="7702" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="698" r_length="330" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E377070" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9431" e_stop="9174"/>
          <exon e_start="9057" e_stop="8948"/>
          <exon e_start="8031" e_stop="7702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAAAAAAAAGAAAAACAGTTTTACAGCCGCAAGATCAGAAGTTCAGAAGCTCACAACACAACTGAAAGGAAAAAAAAATAAAAAATCAATCGCATCAATTGAGCTGCTTCCGATCCACTTGAGCCGCCGGCGATGGCGTCGAAAGTTACTGATAGGATTGAACTAGCTAAGCTTTGTAGCTCTAAGGAGTGGTCGAAAGCAATTCGAATTCTCGATTCTCTTCTTGCTCAAACTTGCGTCATTCAAGATATCTGGTCCGTTACGTTTTTCACTGTTCCATCTTTTTCCCTGTTTGTATATAGGTTTTTGGACATTTATGAATGAACTGATTAATTTTTCTGAATTTAAAATGTGTTCAATTCTTTTTCAGCAACCGAGCGTTTTGCTATAGTCAATTGGAGCTTCACAAGCATGTTATTAAGGATTGTGATAAGGCACTTCAGCTCGATCCTAAGCTTCTTCAAGCTTATATATTCAAAGGTTCTTTTCATTTTCTCCTTGCATTTCCAGCTAACTGTTTTTACCGTGTATAAGAAATGCGAAAGAGAATTTAGAAGTTTTCAATTGCATTTGGAATGTCAATTTTGAATGTGGATGTGTTGTGGTCAGGCATCCTAATCCCTATAGGCCTGTGAAGTCATCTGGGATACTCTAAATTTACAATTTTAGGGTTCTTGTTCAAATTTAGGTGATTGGCTATAATTGAGTAAATTTTTCTGGTTTTGGACAAACATGAACCATTGGTAATTTCGAGGAGTAGGATGAAGCTCTTGTAAAGCTAGTGAACTGTTGCACCTCTCGGTTGATGTCCTACAATTTACGACTATTGTCAAGTATGCGCCAAAATAAGGGTTAGCTTTAAATGAATTGTGTATGTGAGAAGCCATTTTAAGCTTGATAAAGGTCATATTGGACTTGCTTTCTGTATCCTATAGTGGTCTTATATTATATTTTTGAAATGACTTTTAACTTTAAAATAAACTATGTTTGGTTGGGGTATAAAGGGAAGGGATGGAAAATAAAGGAGGGCATAAGATGGTTGAATTCTATGCTCGCGGGGTACAGTAGAGGGTTTGACCATATTGTGTCTATTGTTAAGTACCTTTTCTCTAAAAGGCTATTTCCACGGCATGAACGTGTGACCTCCTTGTATCATTGCAACAACTCCGATCAGATAAAAAGATCAAATACATTTTTGTCTCTTGTGTGTAACATAGCCCTTGAAATAATGATATAAGAATTTGAATTAACAATATTCTTGTGTGGATACTGTGGATTTTCCCTAGATGTGGTTATAGTTTATGCTGCAGAAATTTCAATATTCTTAAAGCTTTACAAACTGGATTTTTGAGTTTGAAGCATTATGTAACAAAGTTACTTGATACTTGTTGCTTAGGACGTGCATTATCTGCTCTTGGTAAGAAAGAGGAAGCTCTTCTAGTTTGGGAGCAAGGGTATGAACATGCAGTTCATCAGTCCGCAGACTTAAAGCAACTGTTAGAGCTTGAAGAGCTGCTCAAAATTGCAAAGCAGAACACCGCAGTTGGCAGCAACAATCATTCGGTGCAGTCATCTGGCCCTGAGTCCAACACTGGACCTCCTCTTTCTACCAAATCTGGTGAAACTTGTGATATTAGTAAGGCCTCAGATAGGGAACTTAAAACATGCAGCAGTGGGATGTTGGAAAGCTCTGAGAAATCAAAGAATAGCTCTGTTTTACAAAATT</genome_strand>
        <mrna_strand>AAAAGAAAAAAAAGAAAAACAGTTTTACAGCCGCAAGATCAGAAGTTCAGAAGCTCACAACACAACTGAAAGGAAAAAAAAATAAAAAATCAATCGCATCAATTGAGCTGCTTCCGATCCACTTGAGCCGCCGGCGATGGCGTCGAAAGTTACTGATAGGATTGAACTAGCTAAGCTTTGTAGCTCTAAGGAGTGGTCGAAAGCAATTCGAATTCTCGATTCTCTTCTTGCTCAAACTTGCGTCATTCAAGATATCTG....................................................................................................................CAACCGAGCGTTTTGCTATAGTCAATTGGAGCTTCACAAGCATGTTATTAAGGATTGTGATAAGGCACTTCAGCTCGATCCTAAGCTTCTTCAAGCTTATATATTCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGTGCATTATCTGCTCTTGGTAAGAAAGAGGAAGCTCTTCTAGTTTGGGAGCAAGGGTATGAACATGCAGTTCATCAGTCCGCAGACTTAAAGCAACTGTTAGAGCTTGAAGAGCTGCTCAAAATTGCAAAGCAGAACACCGCAGTTGGCAGCAACAATCATTCGGTGCAGTCATCTGGCCCTGAGTCCAACACTGGACCTCCTCTTTCTACCAAATCTGGTGAAACTTGTGATATTAGTAAGGCCTCAGATAGGGAACTTAAAACATGCAGCAGTGGGATGTTTGGAAGCTCTGAGAAATCAAAGAATAGCTCTGTTTTACAAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E419695" ref_strand="+" ref_description="SGN-E419695 [STM-30-E21]">
      <seq>ttcctctttcagattctttttttctcctttctacccctcccttctctaccaccacatcgtaaaacacccacaaaaaaaaaaacagttttacagccgcaagatcagaaattcagaagctcacaacacaactgaaaggaaaaaataaaaatcaatcgcatcaattgagctgcttccgatccatttgagccgccagcgatggcgtcaacagttactgataggattgaactagcgaagctttgtagctctaaggagtggtccaaagcaattcgaattctcgattcacttcttgctcaaacttgcgtcattcaagatatctgtaaccgagcgttttgctatagccaattggagcttcacaagcatgtaattaaagattgtgataaggcacttcagctcgatcctaagcttcttcaagcttatatatttaaaggacgtgcattatctgctcttggtaagaaagaggaagctcttctaatttgggagcaagggtatgaacatgcagttcatcagtctgcagacttaaagcaactgttagagcttgaagagctgctcaaaattgcaaagcagaacaccgcagttgccagcaacaatcattcggtgcagtcatctggccctgagtccacactgggcctctactttctaccaatctggtgaaacttgtgatattact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="9810" stop="7490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9510" g_stop="9174" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9173" i_stop="9058" i_length="116">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.969" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9057" g_stop="8948" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="427" r_length="110" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8947" i_stop="8032" i_length="916">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8031" g_stop="7790" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="667" r_length="240" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E419695" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.033" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E419695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9510" e_stop="9174"/>
          <exon e_start="9057" e_stop="8948"/>
          <exon e_start="8031" e_stop="7790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCTTTCAGATTCTTTTTTTTCTCCTTTCTACCCCTCCCTTCTCTACCACCACATCGTAAAACACACCCACCAAAAAAAAGAAAAAAAAGAAAAACAGTTTTACAGCCGCAAGATCAGAAGTTCAGAAGCTCACAACACAACTGAAAGGAAAAAAAAATAAAAAATCAATCGCATCAATTGAGCTGCTTCCGATCCACTTGAGCCGCCGGCGATGGCGTCGAAAGTTACTGATAGGATTGAACTAGCTAAGCTTTGTAGCTCTAAGGAGTGGTCGAAAGCAATTCGAATTCTCGATTCTCTTCTTGCTCAAACTTGCGTCATTCAAGATATCTGGTCCGTTACGTTTTTCACTGTTCCATCTTTTTCCCTGTTTGTATATAGGTTTTTGGACATTTATGAATGAACTGATTAATTTTTCTGAATTTAAAATGTGTTCAATTCTTTTTCAGCAACCGAGCGTTTTGCTATAGTCAATTGGAGCTTCACAAGCATGTTATTAAGGATTGTGATAAGGCACTTCAGCTCGATCCTAAGCTTCTTCAAGCTTATATATTCAAAGGTTCTTTTCATTTTCTCCTTGCATTTCCAGCTAACTGTTTTTACCGTGTATAAGAAATGCGAAAGAGAATTTAGAAGTTTTCAATTGCATTTGGAATGTCAATTTTGAATGTGGATGTGTTGTGGTCAGGCATCCTAATCCCTATAGGCCTGTGAAGTCATCTGGGATACTCTAAATTTACAATTTTAGGGTTCTTGTTCAAATTTAGGTGATTGGCTATAATTGAGTAAATTTTTCTGGTTTTGGACAAACATGAACCATTGGTAATTTCGAGGAGTAGGATGAAGCTCTTGTAAAGCTAGTGAACTGTTGCACCTCTCGGTTGATGTCCTACAATTTACGACTATTGTCAAGTATGCGCCAAAATAAGGGTTAGCTTTAAATGAATTGTGTATGTGAGAAGCCATTTTAAGCTTGATAAAGGTCATATTGGACTTGCTTTCTGTATCCTATAGTGGTCTTATATTATATTTTTGAAATGACTTTTAACTTTAAAATAAACTATGTTTGGTTGGGGTATAAAGGGAAGGGATGGAAAATAAAGGAGGGCATAAGATGGTTGAATTCTATGCTCGCGGGGTACAGTAGAGGGTTTGACCATATTGTGTCTATTGTTAAGTACCTTTTCTCTAAAAGGCTATTTCCACGGCATGAACGTGTGACCTCCTTGTATCATTGCAACAACTCCGATCAGATAAAAAGATCAAATACATTTTTGTCTCTTGTGTGTAACATAGCCCTTGAAATAATGATATAAGAATTTGAATTAACAATATTCTTGTGTGGATACTGTGGATTTTCCCTAGATGTGGTTATAGTTTATGCTGCAGAAATTTCAATATTCTTAAAGCTTTACAAACTGGATTTTTGAGTTTGAAGCATTATGTAACAAAGTTACTTGATACTTGTTGCTTAGGACGTGCATTATCTGCTCTTGGTAAGAAAGAGGAAGCTCTTCTAGTTTGGGAGCAAGGGTATGAACATGCAGTTCATCAGTCCGCAGACTTAAAGCAACTGTTAGAGCTTGAAGAGCTGCTCAAAATTGCAAAGCAGAACACCGCAGTTGGCAGCAACAATCATTCGGTGCAGTCATCTGGCCCTGAGTCCAACACTGGACCTCCTCTTTCTACCAAATCTGGTGAAACTTGTGATATTAGT</genome_strand>
        <mrna_strand>TTCCTCTTTCAGATTCT-TTTTTTCTCCTTTCTACCCCTCCCTTCTCTACCACCACATCGT-AAA-ACACCCA-C-----------AAAAAA-AAAAACAGTTTTACAGCCGCAAGATCAGAAATTCAGAAGCTCACAACACAACTGAAAGG---AAAAAAT-AAAAATCAATCGCATCAATTGAGCTGCTTCCGATCCATTTGAGCCGCCAGCGATGGCGTCAACAGTTACTGATAGGATTGAACTAGCGAAGCTTTGTAGCTCTAAGGAGTGGTCCAAAGCAATTCGAATTCTCGATTCACTTCTTGCTCAAACTTGCGTCATTCAAGATATCTG....................................................................................................................TAACCGAGCGTTTTGCTATAGCCAATTGGAGCTTCACAAGCATGTAATTAAAGATTGTGATAAGGCACTTCAGCTCGATCCTAAGCTTCTTCAAGCTTATATATTTAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGTGCATTATCTGCTCTTGGTAAGAAAGAGGAAGCTCTTCTAATTTGGGAGCAAGGGTATGAACATGCAGTTCATCAGTCTGCAGACTTAAAGCAACTGTTAGAGCTTGAAGAGCTGCTCAAAATTGCAAAGCAGAACACCGCAGTTGCCAGCAACAATCATTCGGTGCAGTCATCTGGCCCTGAGTCC-ACACTGGGCCTCTACTTTCTACC-AATCTGGTGAAACTTGTGATATTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E242746" ref_strand="+" ref_description="SGN-E242746 [cLED-31-E24]">
      <seq>aaaagaaaaaaaagaaaaacagttttacagccgcaagatcagaagttcagaagctcacaacacaactgaaaggaaaaaaaaataaaaaatcaatcgcatcaattgagctgcttccgatccacttgagccgccggcgatggcgtcgaaagttactgataggattgaactagctaagctttgtagctctaaggagtggtcgaaagcaattcgaattctcgattctcttcttgctcaaacttgcgtcattcaagatatctgcaaccgagcgttttgctatagtcaattggagcttcacaagcatgttattaaggattgtgataaggcacttcagctcgatcctaagcttcttcaagcttatatattcaaaggacgtgcattatctgctcttggtaagaaagaggaagctcttctagtttgggagcaagggtatgaacatgcagttcatcagtccgcagacttaaagcaactgttagagcttgaagagctgctcaaaattgcaaagcagaacaccgcanttggcagcaacaatcattcggtgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="9731" stop="7560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9431" g_stop="9174" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9173" i_stop="9058" i_length="116">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9057" g_stop="8948" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="368" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8947" i_stop="8032" i_length="916">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8031" g_stop="7860" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="540" r_length="172" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E242746" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242746" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9431" e_stop="9174"/>
          <exon e_start="9057" e_stop="8948"/>
          <exon e_start="8031" e_stop="7860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAAAAAAAAGAAAAACAGTTTTACAGCCGCAAGATCAGAAGTTCAGAAGCTCACAACACAACTGAAAGGAAAAAAAAATAAAAAATCAATCGCATCAATTGAGCTGCTTCCGATCCACTTGAGCCGCCGGCGATGGCGTCGAAAGTTACTGATAGGATTGAACTAGCTAAGCTTTGTAGCTCTAAGGAGTGGTCGAAAGCAATTCGAATTCTCGATTCTCTTCTTGCTCAAACTTGCGTCATTCAAGATATCTGGTCCGTTACGTTTTTCACTGTTCCATCTTTTTCCCTGTTTGTATATAGGTTTTTGGACATTTATGAATGAACTGATTAATTTTTCTGAATTTAAAATGTGTTCAATTCTTTTTCAGCAACCGAGCGTTTTGCTATAGTCAATTGGAGCTTCACAAGCATGTTATTAAGGATTGTGATAAGGCACTTCAGCTCGATCCTAAGCTTCTTCAAGCTTATATATTCAAAGGTTCTTTTCATTTTCTCCTTGCATTTCCAGCTAACTGTTTTTACCGTGTATAAGAAATGCGAAAGAGAATTTAGAAGTTTTCAATTGCATTTGGAATGTCAATTTTGAATGTGGATGTGTTGTGGTCAGGCATCCTAATCCCTATAGGCCTGTGAAGTCATCTGGGATACTCTAAATTTACAATTTTAGGGTTCTTGTTCAAATTTAGGTGATTGGCTATAATTGAGTAAATTTTTCTGGTTTTGGACAAACATGAACCATTGGTAATTTCGAGGAGTAGGATGAAGCTCTTGTAAAGCTAGTGAACTGTTGCACCTCTCGGTTGATGTCCTACAATTTACGACTATTGTCAAGTATGCGCCAAAATAAGGGTTAGCTTTAAATGAATTGTGTATGTGAGAAGCCATTTTAAGCTTGATAAAGGTCATATTGGACTTGCTTTCTGTATCCTATAGTGGTCTTATATTATATTTTTGAAATGACTTTTAACTTTAAAATAAACTATGTTTGGTTGGGGTATAAAGGGAAGGGATGGAAAATAAAGGAGGGCATAAGATGGTTGAATTCTATGCTCGCGGGGTACAGTAGAGGGTTTGACCATATTGTGTCTATTGTTAAGTACCTTTTCTCTAAAAGGCTATTTCCACGGCATGAACGTGTGACCTCCTTGTATCATTGCAACAACTCCGATCAGATAAAAAGATCAAATACATTTTTGTCTCTTGTGTGTAACATAGCCCTTGAAATAATGATATAAGAATTTGAATTAACAATATTCTTGTGTGGATACTGTGGATTTTCCCTAGATGTGGTTATAGTTTATGCTGCAGAAATTTCAATATTCTTAAAGCTTTACAAACTGGATTTTTGAGTTTGAAGCATTATGTAACAAAGTTACTTGATACTTGTTGCTTAGGACGTGCATTATCTGCTCTTGGTAAGAAAGAGGAAGCTCTTCTAGTTTGGGAGCAAGGGTATGAACATGCAGTTCATCAGTCCGCAGACTTAAAGCAACTGTTAGAGCTTGAAGAGCTGCTCAAAATTGCAAAGCAGAACACCGCAGTTGGCAGCAACAATCATTCGGTGCA</genome_strand>
        <mrna_strand>AAAAGAAAAAAAAGAAAAACAGTTTTACAGCCGCAAGATCAGAAGTTCAGAAGCTCACAACACAACTGAAAGGAAAAAAAAATAAAAAATCAATCGCATCAATTGAGCTGCTTCCGATCCACTTGAGCCGCCGGCGATGGCGTCGAAAGTTACTGATAGGATTGAACTAGCTAAGCTTTGTAGCTCTAAGGAGTGGTCGAAAGCAATTCGAATTCTCGATTCTCTTCTTGCTCAAACTTGCGTCATTCAAGATATCTG....................................................................................................................CAACCGAGCGTTTTGCTATAGTCAATTGGAGCTTCACAAGCATGTTATTAAGGATTGTGATAAGGCACTTCAGCTCGATCCTAAGCTTCTTCAAGCTTATATATTCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGTGCATTATCTGCTCTTGGTAAGAAAGAGGAAGCTCTTCTAGTTTGGGAGCAAGGGTATGAACATGCAGTTCATCAGTCCGCAGACTTAAAGCAACTGTTAGAGCTTGAAGAGCTGCTCAAAATTGCAAAGCAGAACACCGCANTTGGCAGCAACAATCATTCGGTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E366737" ref_strand="+" ref_description="SGN-E366737 [cLPT-17-O6]">
      <seq>acacacccaccaaaaaaaaaagaaaaacagttttaaaagccgcaagatcagaaattcagaagctcacaacacaactgaaaggaaaaaaataaaaatcaatcgcatcaattgagctgcttccgatccatttgagccgccggcgatggcgtcgaaagttactgataggattgaactagctaagctttgtagctctaaggagtggtccaaagcaatacgaattctcgattcacttcttgctcaaacttgcgtcattcaagatatctgcaaccgagcgttttgctatagtcaattggagcttcacaagcatgttattaaggattgtgataaggcacttcagctcgatcctaagcttcttcaagcttatatattcaaaggacgtgcattatctgctcttggtaagaaagaggaagctattctaatttgggagcaagggtatgaacatgcagttcatcagtctgcagacttaaagcaactgttagagcttgaagagctgctcaaaattgcaaagcagaacaccgcagttggcagcaacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="9729" stop="7571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9442" g_stop="9174" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9173" i_stop="9058" i_length="116">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9057" g_stop="8948" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="374" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8947" i_stop="8032" i_length="916">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8031" g_stop="7871" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="535" r_length="161" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E366737" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9442" e_stop="9174"/>
          <exon e_start="9057" e_stop="8948"/>
          <exon e_start="8031" e_stop="7871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCACCAAAAAAAAGAAAAAAAAGAAAAACAGTTTT-ACAGCCGCAAGATCAGAAGTTCAGAAGCTCACAACACAACTGAAAGGAAAAAAAAATAAAAAATCAATCGCATCAATTGAGCTGCTTCCGATCCACTTGAGCCGCCGGCGATGGCGTCGAAAGTTACTGATAGGATTGAACTAGCTAAGCTTTGTAGCTCTAAGGAGTGGTCGAAAGCAATTCGAATTCTCGATTCTCTTCTTGCTCAAACTTGCGTCATTCAAGATATCTGGTCCGTTACGTTTTTCACTGTTCCATCTTTTTCCCTGTTTGTATATAGGTTTTTGGACATTTATGAATGAACTGATTAATTTTTCTGAATTTAAAATGTGTTCAATTCTTTTTCAGCAACCGAGCGTTTTGCTATAGTCAATTGGAGCTTCACAAGCATGTTATTAAGGATTGTGATAAGGCACTTCAGCTCGATCCTAAGCTTCTTCAAGCTTATATATTCAAAGGTTCTTTTCATTTTCTCCTTGCATTTCCAGCTAACTGTTTTTACCGTGTATAAGAAATGCGAAAGAGAATTTAGAAGTTTTCAATTGCATTTGGAATGTCAATTTTGAATGTGGATGTGTTGTGGTCAGGCATCCTAATCCCTATAGGCCTGTGAAGTCATCTGGGATACTCTAAATTTACAATTTTAGGGTTCTTGTTCAAATTTAGGTGATTGGCTATAATTGAGTAAATTTTTCTGGTTTTGGACAAACATGAACCATTGGTAATTTCGAGGAGTAGGATGAAGCTCTTGTAAAGCTAGTGAACTGTTGCACCTCTCGGTTGATGTCCTACAATTTACGACTATTGTCAAGTATGCGCCAAAATAAGGGTTAGCTTTAAATGAATTGTGTATGTGAGAAGCCATTTTAAGCTTGATAAAGGTCATATTGGACTTGCTTTCTGTATCCTATAGTGGTCTTATATTATATTTTTGAAATGACTTTTAACTTTAAAATAAACTATGTTTGGTTGGGGTATAAAGGGAAGGGATGGAAAATAAAGGAGGGCATAAGATGGTTGAATTCTATGCTCGCGGGGTACAGTAGAGGGTTTGACCATATTGTGTCTATTGTTAAGTACCTTTTCTCTAAAAGGCTATTTCCACGGCATGAACGTGTGACCTCCTTGTATCATTGCAACAACTCCGATCAGATAAAAAGATCAAATACATTTTTGTCTCTTGTGTGTAACATAGCCCTTGAAATAATGATATAAGAATTTGAATTAACAATATTCTTGTGTGGATACTGTGGATTTTCCCTAGATGTGGTTATAGTTTATGCTGCAGAAATTTCAATATTCTTAAAGCTTTACAAACTGGATTTTTGAGTTTGAAGCATTATGTAACAAAGTTACTTGATACTTGTTGCTTAGGACGTGCATTATCTGCTCTTGGTAAGAAAGAGGAAGCTCTTCTAGTTTGGGAGCAAGGGTATGAACATGCAGTTCATCAGTCCGCAGACTTAAAGCAACTGTTAGAGCTTGAAGAGCTGCTCAAAATTGCAAAGCAGAACACCGCAGTTGGCAGCAACAAT</genome_strand>
        <mrna_strand>ACACACCCACCAAAA--AAAA-AAGAAAAACAGTTTTAAAAGCCGCAAGATCAGAAATTCAGAAGCTCACAACACAACTGAAAGG--AAAAAAAT-AAAAATCAATCGCATCAATTGAGCTGCTTCCGATCCATTTGAGCCGCCGGCGATGGCGTCGAAAGTTACTGATAGGATTGAACTAGCTAAGCTTTGTAGCTCTAAGGAGTGGTCCAAAGCAATACGAATTCTCGATTCACTTCTTGCTCAAACTTGCGTCATTCAAGATATCTG....................................................................................................................CAACCGAGCGTTTTGCTATAGTCAATTGGAGCTTCACAAGCATGTTATTAAGGATTGTGATAAGGCACTTCAGCTCGATCCTAAGCTTCTTCAAGCTTATATATTCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGTGCATTATCTGCTCTTGGTAAGAAAGAGGAAGCTATTCTAATTTGGGAGCAAGGGTATGAACATGCAGTTCATCAGTCTGCAGACTTAAAGCAACTGTTAGAGCTTGAAGAGCTGCTCAAAATTGCAAAGCAGAACACCGCAGTTGGCAGCAACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E228271" ref_strand="+" ref_description="SGN-E228271 [cLED-2-H2]">
      <seq>aaaagaaaaaaaagaaaaacagttttacagccgcaagatcagaagttcagaagctcacaacacaactgaaaggaaaaaaaaataaaaaatcaatcgcatcaattgagctgcttccgatccacttgagccgccggcgatggcgtcgaaagttactgataggattgaactagctaagctttgtagctctaaggagtggtcgaaagcaattcgaattctcgattctcttcttgctcaaacttgcgtcattcaagatatctgcaaccgagcgttttgctatagtcaattggagcttcacaagcatgttattaaggattgtgataaggcacttcagctcgatcctaagcttcttcaagcttatatattcaaaggacgtgcattatctgctcttggtaagaaagaggaagctcttctagtttgggagcaagggtatgaacatgcagttcatcagtccgcagacttaaagcaactgttagagcttgaagagctgctcaaaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="9731" stop="7602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9431" g_stop="9174" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9173" i_stop="9058" i_length="116">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9057" g_stop="8948" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="368" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8947" i_stop="8032" i_length="916">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8031" g_stop="7902" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="498" r_length="130" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E228271" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228271" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9431" e_stop="9174"/>
          <exon e_start="9057" e_stop="8948"/>
          <exon e_start="8031" e_stop="7902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAAAAAAAAGAAAAACAGTTTTACAGCCGCAAGATCAGAAGTTCAGAAGCTCACAACACAACTGAAAGGAAAAAAAAATAAAAAATCAATCGCATCAATTGAGCTGCTTCCGATCCACTTGAGCCGCCGGCGATGGCGTCGAAAGTTACTGATAGGATTGAACTAGCTAAGCTTTGTAGCTCTAAGGAGTGGTCGAAAGCAATTCGAATTCTCGATTCTCTTCTTGCTCAAACTTGCGTCATTCAAGATATCTGGTCCGTTACGTTTTTCACTGTTCCATCTTTTTCCCTGTTTGTATATAGGTTTTTGGACATTTATGAATGAACTGATTAATTTTTCTGAATTTAAAATGTGTTCAATTCTTTTTCAGCAACCGAGCGTTTTGCTATAGTCAATTGGAGCTTCACAAGCATGTTATTAAGGATTGTGATAAGGCACTTCAGCTCGATCCTAAGCTTCTTCAAGCTTATATATTCAAAGGTTCTTTTCATTTTCTCCTTGCATTTCCAGCTAACTGTTTTTACCGTGTATAAGAAATGCGAAAGAGAATTTAGAAGTTTTCAATTGCATTTGGAATGTCAATTTTGAATGTGGATGTGTTGTGGTCAGGCATCCTAATCCCTATAGGCCTGTGAAGTCATCTGGGATACTCTAAATTTACAATTTTAGGGTTCTTGTTCAAATTTAGGTGATTGGCTATAATTGAGTAAATTTTTCTGGTTTTGGACAAACATGAACCATTGGTAATTTCGAGGAGTAGGATGAAGCTCTTGTAAAGCTAGTGAACTGTTGCACCTCTCGGTTGATGTCCTACAATTTACGACTATTGTCAAGTATGCGCCAAAATAAGGGTTAGCTTTAAATGAATTGTGTATGTGAGAAGCCATTTTAAGCTTGATAAAGGTCATATTGGACTTGCTTTCTGTATCCTATAGTGGTCTTATATTATATTTTTGAAATGACTTTTAACTTTAAAATAAACTATGTTTGGTTGGGGTATAAAGGGAAGGGATGGAAAATAAAGGAGGGCATAAGATGGTTGAATTCTATGCTCGCGGGGTACAGTAGAGGGTTTGACCATATTGTGTCTATTGTTAAGTACCTTTTCTCTAAAAGGCTATTTCCACGGCATGAACGTGTGACCTCCTTGTATCATTGCAACAACTCCGATCAGATAAAAAGATCAAATACATTTTTGTCTCTTGTGTGTAACATAGCCCTTGAAATAATGATATAAGAATTTGAATTAACAATATTCTTGTGTGGATACTGTGGATTTTCCCTAGATGTGGTTATAGTTTATGCTGCAGAAATTTCAATATTCTTAAAGCTTTACAAACTGGATTTTTGAGTTTGAAGCATTATGTAACAAAGTTACTTGATACTTGTTGCTTAGGACGTGCATTATCTGCTCTTGGTAAGAAAGAGGAAGCTCTTCTAGTTTGGGAGCAAGGGTATGAACATGCAGTTCATCAGTCCGCAGACTTAAAGCAACTGTTAGAGCTTGAAGAGCTGCTCAAAATTGC</genome_strand>
        <mrna_strand>AAAAGAAAAAAAAGAAAAACAGTTTTACAGCCGCAAGATCAGAAGTTCAGAAGCTCACAACACAACTGAAAGGAAAAAAAAATAAAAAATCAATCGCATCAATTGAGCTGCTTCCGATCCACTTGAGCCGCCGGCGATGGCGTCGAAAGTTACTGATAGGATTGAACTAGCTAAGCTTTGTAGCTCTAAGGAGTGGTCGAAAGCAATTCGAATTCTCGATTCTCTTCTTGCTCAAACTTGCGTCATTCAAGATATCTG....................................................................................................................CAACCGAGCGTTTTGCTATAGTCAATTGGAGCTTCACAAGCATGTTATTAAGGATTGTGATAAGGCACTTCAGCTCGATCCTAAGCTTCTTCAAGCTTATATATTCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGTGCATTATCTGCTCTTGGTAAGAAAGAGGAAGCTCTTCTAGTTTGGGAGCAAGGGTATGAACATGCAGTTCATCAGTCCGCAGACTTAAAGCAACTGTTAGAGCTTGAAGAGCTGCTCAAAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E242990" ref_strand="+" ref_description="SGN-E242990 [cLED-31-N4]">
      <seq>aaaagaccaaaaagaaagacagttttacagccgcaagatcagaagttcagaagctcacaacacaactgaaaggaaaaaaaaataaaaaatcaatcgcatcaattgagctgcttccgatccacttgagccgccggcgatggcgtcgaaagttactgataggattgaactagctaagctttgtagctctaaggagtggtcgaaagcaattcggattctcgattgtattcttgctcaaacttgcctcattcaagatatctgcaaccgagcgtttagctatagtcaataggagcttcacaagcatgttattaaggattgtgataaggcacttcagctcgatcctaagcttcttcaagcttatatattcaaaggacgtgcattatctgctcttggtaagaaagaggaagctcttctagtttgggagcaagggtatgaacatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="9731" stop="7662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9431" g_stop="9174" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9173" i_stop="9058" i_length="116">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.969" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9057" g_stop="8948" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="368" r_length="110" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8947" i_stop="8032" i_length="916">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8031" g_stop="7962" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="438" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E242990" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9431" e_stop="9174"/>
          <exon e_start="9057" e_stop="8948"/>
          <exon e_start="8031" e_stop="7962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAAAAAAAAGAAAAACAGTTTTACAGCCGCAAGATCAGAAGTTCAGAAGCTCACAACACAACTGAAAGGAAAAAAAAATAAAAAATCAATCGCATCAATTGAGCTGCTTCCGATCCACTTGAGCCGCCGGCGATGGCGTCGAAAGTTACTGATAGGATTGAACTAGCTAAGCTTTGTAGCTCTAAGGAGTGGTCGAAAGCAATTCGAATTCTCGATTCTCTTCTTGCTCAAACTTGCGTCATTCAAGATATCTGGTCCGTTACGTTTTTCACTGTTCCATCTTTTTCCCTGTTTGTATATAGGTTTTTGGACATTTATGAATGAACTGATTAATTTTTCTGAATTTAAAATGTGTTCAATTCTTTTTCAGCAACCGAGCGTTTTGCTATAGTCAATTGGAGCTTCACAAGCATGTTATTAAGGATTGTGATAAGGCACTTCAGCTCGATCCTAAGCTTCTTCAAGCTTATATATTCAAAGGTTCTTTTCATTTTCTCCTTGCATTTCCAGCTAACTGTTTTTACCGTGTATAAGAAATGCGAAAGAGAATTTAGAAGTTTTCAATTGCATTTGGAATGTCAATTTTGAATGTGGATGTGTTGTGGTCAGGCATCCTAATCCCTATAGGCCTGTGAAGTCATCTGGGATACTCTAAATTTACAATTTTAGGGTTCTTGTTCAAATTTAGGTGATTGGCTATAATTGAGTAAATTTTTCTGGTTTTGGACAAACATGAACCATTGGTAATTTCGAGGAGTAGGATGAAGCTCTTGTAAAGCTAGTGAACTGTTGCACCTCTCGGTTGATGTCCTACAATTTACGACTATTGTCAAGTATGCGCCAAAATAAGGGTTAGCTTTAAATGAATTGTGTATGTGAGAAGCCATTTTAAGCTTGATAAAGGTCATATTGGACTTGCTTTCTGTATCCTATAGTGGTCTTATATTATATTTTTGAAATGACTTTTAACTTTAAAATAAACTATGTTTGGTTGGGGTATAAAGGGAAGGGATGGAAAATAAAGGAGGGCATAAGATGGTTGAATTCTATGCTCGCGGGGTACAGTAGAGGGTTTGACCATATTGTGTCTATTGTTAAGTACCTTTTCTCTAAAAGGCTATTTCCACGGCATGAACGTGTGACCTCCTTGTATCATTGCAACAACTCCGATCAGATAAAAAGATCAAATACATTTTTGTCTCTTGTGTGTAACATAGCCCTTGAAATAATGATATAAGAATTTGAATTAACAATATTCTTGTGTGGATACTGTGGATTTTCCCTAGATGTGGTTATAGTTTATGCTGCAGAAATTTCAATATTCTTAAAGCTTTACAAACTGGATTTTTGAGTTTGAAGCATTATGTAACAAAGTTACTTGATACTTGTTGCTTAGGACGTGCATTATCTGCTCTTGGTAAGAAAGAGGAAGCTCTTCTAGTTTGGGAGCAAGGGTATGAACATGC</genome_strand>
        <mrna_strand>AAAAGACCAAAAAGAAAGACAGTTTTACAGCCGCAAGATCAGAAGTTCAGAAGCTCACAACACAACTGAAAGGAAAAAAAAATAAAAAATCAATCGCATCAATTGAGCTGCTTCCGATCCACTTGAGCCGCCGGCGATGGCGTCGAAAGTTACTGATAGGATTGAACTAGCTAAGCTTTGTAGCTCTAAGGAGTGGTCGAAAGCAATTCGGATTCTCGATTGTATTCTTGCTCAAACTTGCCTCATTCAAGATATCTG....................................................................................................................CAACCGAGCGTTTAGCTATAGTCAATAGGAGCTTCACAAGCATGTTATTAAGGATTGTGATAAGGCACTTCAGCTCGATCCTAAGCTTCTTCAAGCTTATATATTCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGTGCATTATCTGCTCTTGGTAAGAAAGAGGAAGCTCTTCTAGTTTGGGAGCAAGGGTATGAACATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E237610" ref_strand="+" ref_description="SGN-E237610 [cLED-19-E5]">
      <seq>aaaagaaaaaaaagaaaaacagttttacagccgcaagatcagaagttcagaagctcacaacacaactgaaaggaaaaaaaaataaaaaatcaatcgcatcaattgagctgcttccgatccacttgagccgccggcgatggcgtcgaaagttactgataggattgaactagctaagctttgtagctctaaggagtggtcgaaagcaattcgaattctcgattctcttcttgctcaaacttgcgtcattcaagatatctgcaaccgagcgttttgctatagtcaattggagcttcacaagcatgttattaaggattgtgataaggcacttcagctcgatcctaagcttcttcaagcttatatattcaaaggacgtgcattatctgctcttggtaagaaagaggaagctcttctagtttgggagcaagggtatgaacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="9731" stop="7663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9431" g_stop="9174" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9173" i_stop="9058" i_length="116">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9057" g_stop="8948" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="368" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8947" i_stop="8032" i_length="916">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8031" g_stop="7964" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="436" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E237610" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9431" e_stop="9174"/>
          <exon e_start="9057" e_stop="8948"/>
          <exon e_start="8031" e_stop="7964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAAAAAAAAGAAAAACAGTTTTACAGCCGCAAGATCAGAAGTTCAGAAGCTCACAACACAACTGAAAGGAAAAAAAAATAAAAAATCAATCGCATCAATTGAGCTGCTTCCGATCCACTTGAGCCGCCGGCGATGGCGTCGAAAGTTACTGATAGGATTGAACTAGCTAAGCTTTGTAGCTCTAAGGAGTGGTCGAAAGCAATTCGAATTCTCGATTCTCTTCTTGCTCAAACTTGCGTCATTCAAGATATCTGGTCCGTTACGTTTTTCACTGTTCCATCTTTTTCCCTGTTTGTATATAGGTTTTTGGACATTTATGAATGAACTGATTAATTTTTCTGAATTTAAAATGTGTTCAATTCTTTTTCAGCAACCGAGCGTTTTGCTATAGTCAATTGGAGCTTCACAAGCATGTTATTAAGGATTGTGATAAGGCACTTCAGCTCGATCCTAAGCTTCTTCAAGCTTATATATTCAAAGGTTCTTTTCATTTTCTCCTTGCATTTCCAGCTAACTGTTTTTACCGTGTATAAGAAATGCGAAAGAGAATTTAGAAGTTTTCAATTGCATTTGGAATGTCAATTTTGAATGTGGATGTGTTGTGGTCAGGCATCCTAATCCCTATAGGCCTGTGAAGTCATCTGGGATACTCTAAATTTACAATTTTAGGGTTCTTGTTCAAATTTAGGTGATTGGCTATAATTGAGTAAATTTTTCTGGTTTTGGACAAACATGAACCATTGGTAATTTCGAGGAGTAGGATGAAGCTCTTGTAAAGCTAGTGAACTGTTGCACCTCTCGGTTGATGTCCTACAATTTACGACTATTGTCAAGTATGCGCCAAAATAAGGGTTAGCTTTAAATGAATTGTGTATGTGAGAAGCCATTTTAAGCTTGATAAAGGTCATATTGGACTTGCTTTCTGTATCCTATAGTGGTCTTATATTATATTTTTGAAATGACTTTTAACTTTAAAATAAACTATGTTTGGTTGGGGTATAAAGGGAAGGGATGGAAAATAAAGGAGGGCATAAGATGGTTGAATTCTATGCTCGCGGGGTACAGTAGAGGGTTTGACCATATTGTGTCTATTGTTAAGTACCTTTTCTCTAAAAGGCTATTTCCACGGCATGAACGTGTGACCTCCTTGTATCATTGCAACAACTCCGATCAGATAAAAAGATCAAATACATTTTTGTCTCTTGTGTGTAACATAGCCCTTGAAATAATGATATAAGAATTTGAATTAACAATATTCTTGTGTGGATACTGTGGATTTTCCCTAGATGTGGTTATAGTTTATGCTGCAGAAATTTCAATATTCTTAAAGCTTTACAAACTGGATTTTTGAGTTTGAAGCATTATGTAACAAAGTTACTTGATACTTGTTGCTTAGGACGTGCATTATCTGCTCTTGGTAAGAAAGAGGAAGCTCTTCTAGTTTGGGAGCAAGGGTATGAACAT</genome_strand>
        <mrna_strand>AAAAGAAAAAAAAGAAAAACAGTTTTACAGCCGCAAGATCAGAAGTTCAGAAGCTCACAACACAACTGAAAGGAAAAAAAAATAAAAAATCAATCGCATCAATTGAGCTGCTTCCGATCCACTTGAGCCGCCGGCGATGGCGTCGAAAGTTACTGATAGGATTGAACTAGCTAAGCTTTGTAGCTCTAAGGAGTGGTCGAAAGCAATTCGAATTCTCGATTCTCTTCTTGCTCAAACTTGCGTCATTCAAGATATCTG....................................................................................................................CAACCGAGCGTTTTGCTATAGTCAATTGGAGCTTCACAAGCATGTTATTAAGGATTGTGATAAGGCACTTCAGCTCGATCCTAAGCTTCTTCAAGCTTATATATTCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGTGCATTATCTGCTCTTGGTAAGAAAGAGGAAGCTCTTCTAGTTTGGGAGCAAGGGTATGAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240254" ref_strand="+" ref_description="SGN-E240254 [cLED-25-N15]">
      <seq>aaaagaaaaaaaagaaaaacagttttacagccgcaagatcagaagttcagaagctcacaacacaactgaaaggaaaaaaaaataaaaaatcaatcgcatcaattgagctgcttccgatccacttgagccgccggcgatggcgtcgaaagttactgataggattgaactagctaagctttgtagctctaaggagtggtcgaaagcaattcgaattctcgattctcttcttgctcaaacttgcgtcattcaagatatctgcaaccgagcgttttgctatagtcaattggagcttcacaagcatgttattaaggattgtgataaggcacttcagctcgatcctaagcttcttcaagcttatatattcaaaggacgtgcattatctgctcttggtaagaaagaggaagctcttctagtttgggagcaagggtatgaacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="9731" stop="7663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9431" g_stop="9174" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9173" i_stop="9058" i_length="116">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9057" g_stop="8948" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="368" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8947" i_stop="8032" i_length="916">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8031" g_stop="7964" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="436" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E240254" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9431" e_stop="9174"/>
          <exon e_start="9057" e_stop="8948"/>
          <exon e_start="8031" e_stop="7964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAAAAAAAAGAAAAACAGTTTTACAGCCGCAAGATCAGAAGTTCAGAAGCTCACAACACAACTGAAAGGAAAAAAAAATAAAAAATCAATCGCATCAATTGAGCTGCTTCCGATCCACTTGAGCCGCCGGCGATGGCGTCGAAAGTTACTGATAGGATTGAACTAGCTAAGCTTTGTAGCTCTAAGGAGTGGTCGAAAGCAATTCGAATTCTCGATTCTCTTCTTGCTCAAACTTGCGTCATTCAAGATATCTGGTCCGTTACGTTTTTCACTGTTCCATCTTTTTCCCTGTTTGTATATAGGTTTTTGGACATTTATGAATGAACTGATTAATTTTTCTGAATTTAAAATGTGTTCAATTCTTTTTCAGCAACCGAGCGTTTTGCTATAGTCAATTGGAGCTTCACAAGCATGTTATTAAGGATTGTGATAAGGCACTTCAGCTCGATCCTAAGCTTCTTCAAGCTTATATATTCAAAGGTTCTTTTCATTTTCTCCTTGCATTTCCAGCTAACTGTTTTTACCGTGTATAAGAAATGCGAAAGAGAATTTAGAAGTTTTCAATTGCATTTGGAATGTCAATTTTGAATGTGGATGTGTTGTGGTCAGGCATCCTAATCCCTATAGGCCTGTGAAGTCATCTGGGATACTCTAAATTTACAATTTTAGGGTTCTTGTTCAAATTTAGGTGATTGGCTATAATTGAGTAAATTTTTCTGGTTTTGGACAAACATGAACCATTGGTAATTTCGAGGAGTAGGATGAAGCTCTTGTAAAGCTAGTGAACTGTTGCACCTCTCGGTTGATGTCCTACAATTTACGACTATTGTCAAGTATGCGCCAAAATAAGGGTTAGCTTTAAATGAATTGTGTATGTGAGAAGCCATTTTAAGCTTGATAAAGGTCATATTGGACTTGCTTTCTGTATCCTATAGTGGTCTTATATTATATTTTTGAAATGACTTTTAACTTTAAAATAAACTATGTTTGGTTGGGGTATAAAGGGAAGGGATGGAAAATAAAGGAGGGCATAAGATGGTTGAATTCTATGCTCGCGGGGTACAGTAGAGGGTTTGACCATATTGTGTCTATTGTTAAGTACCTTTTCTCTAAAAGGCTATTTCCACGGCATGAACGTGTGACCTCCTTGTATCATTGCAACAACTCCGATCAGATAAAAAGATCAAATACATTTTTGTCTCTTGTGTGTAACATAGCCCTTGAAATAATGATATAAGAATTTGAATTAACAATATTCTTGTGTGGATACTGTGGATTTTCCCTAGATGTGGTTATAGTTTATGCTGCAGAAATTTCAATATTCTTAAAGCTTTACAAACTGGATTTTTGAGTTTGAAGCATTATGTAACAAAGTTACTTGATACTTGTTGCTTAGGACGTGCATTATCTGCTCTTGGTAAGAAAGAGGAAGCTCTTCTAGTTTGGGAGCAAGGGTATGAACAT</genome_strand>
        <mrna_strand>AAAAGAAAAAAAAGAAAAACAGTTTTACAGCCGCAAGATCAGAAGTTCAGAAGCTCACAACACAACTGAAAGGAAAAAAAAATAAAAAATCAATCGCATCAATTGAGCTGCTTCCGATCCACTTGAGCCGCCGGCGATGGCGTCGAAAGTTACTGATAGGATTGAACTAGCTAAGCTTTGTAGCTCTAAGGAGTGGTCGAAAGCAATTCGAATTCTCGATTCTCTTCTTGCTCAAACTTGCGTCATTCAAGATATCTG....................................................................................................................CAACCGAGCGTTTTGCTATAGTCAATTGGAGCTTCACAAGCATGTTATTAAGGATTGTGATAAGGCACTTCAGCTCGATCCTAAGCTTCTTCAAGCTTATATATTCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGTGCATTATCTGCTCTTGGTAAGAAAGAGGAAGCTCTTCTAGTTTGGGAGCAAGGGTATGAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E444626" ref_strand="+" ref_description="SGN-E444626 [cSTA-43-L5]">
      <seq>ttcctctttcagattctttttttctcctttctacccctcccttctctaccaccacatcgtaaaacacccacaaaaaaaaaaacagttttacagccgcaagatcagaaattcagaagctcacaacacaactgaaaggaaaaaataaaaatcaatcgcatcaattgagctgcttccgatccatttgagccgccagcgatggcgtcaacagttactgataggattgaactagcgaagctttgtagctctaaggagtggtccaaagcaattcgaattctcgattcacttcttgctcaaacttgcgtcattcaagatatctgtaaccgagcgttttgctatagccaattggagcttcacaagcatgtaattaaagattgtgataaggcacttcagctcgatcctaagcttcttcaagcttatatatttaaaggacgtgcattatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="9810" stop="8647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9510" g_stop="9174" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9173" i_stop="9058" i_length="116">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.969" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9057" g_stop="8948" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="427" r_length="110" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E444626" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E444626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9510" e_stop="9174"/>
          <exon e_start="9057" e_stop="8948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCTTTCAGATTCTTTTTTTTCTCCTTTCTACCCCTCCCTTCTCTACCACCACATCGTAAAACACACCCACCAAAAAAAAGAAAAAAAAGAAAAACAGTTTTACAGCCGCAAGATCAGAAGTTCAGAAGCTCACAACACAACTGAAAGGAAAAAAAAATAAAAAATCAATCGCATCAATTGAGCTGCTTCCGATCCACTTGAGCCGCCGGCGATGGCGTCGAAAGTTACTGATAGGATTGAACTAGCTAAGCTTTGTAGCTCTAAGGAGTGGTCGAAAGCAATTCGAATTCTCGATTCTCTTCTTGCTCAAACTTGCGTCATTCAAGATATCTGGTCCGTTACGTTTTTCACTGTTCCATCTTTTTCCCTGTTTGTATATAGGTTTTTGGACATTTATGAATGAACTGATTAATTTTTCTGAATTTAAAATGTGTTCAATTCTTTTTCAGCAACCGAGCGTTTTGCTATAGTCAATTGGAGCTTCACAAGCATGTTATTAAGGATTGTGATAAGGCACTTCAGCTCGATCCTAAGCTTCTTCAAGCTTATATATTCAAAG</genome_strand>
        <mrna_strand>TTCCTCTTTCAGATTCT-TTTTTTCTCCTTTCTACCCCTCCCTTCTCTACCACCACATCGT-AAA-ACACCCA-C-----------AAAAAA-AAAAACAGTTTTACAGCCGCAAGATCAGAAATTCAGAAGCTCACAACACAACTGAAAGG---AAAAAAT-AAAAATCAATCGCATCAATTGAGCTGCTTCCGATCCATTTGAGCCGCCAGCGATGGCGTCAACAGTTACTGATAGGATTGAACTAGCGAAGCTTTGTAGCTCTAAGGAGTGGTCCAAAGCAATTCGAATTCTCGATTCACTTCTTGCTCAAACTTGCGTCATTCAAGATATCTG....................................................................................................................TAACCGAGCGTTTTGCTATAGCCAATTGGAGCTTCACAAGCATGTAATTAAAGATTGTGATAAGGCACTTCAGCTCGATCCTAAGCTTCTTCAAGCTTATATATTTAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E366736" ref_strand="+" ref_description="SGN-E366736 [cLPT-17-O2]">
      <seq>cacccaccaaaaaaaaaagaaaaacagttttaaaagccgcaagatcagaaattcataagctcacaacacaactgaaaggaaaaaaataaaaatcaatcgcatcaattgagctgcttccgatccatttgagccgccggcgatggcgtcgaaagttactgataggattgaactagctaagctttgtagctctaaagagtggtccaaagcaatacgaattctcgattcacttcttgctcaaacttgcgtcattcaagatatctgcaaccgagcgttttgctatagtcaattggagcttcacaagcatgtttttaaggattgtgataaggcacttcaactcgatcctaagctttttcaagcttatatattcaaaggacgtgcatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="9729" stop="8647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9436" g_stop="9174" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9173" i_stop="9058" i_length="116">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.969" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9057" g_stop="8948" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="371" r_length="110" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E366736" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9436" e_stop="9174"/>
          <exon e_start="9057" e_stop="8948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAAAAGAAAAAAAAGAAAAACAGTTTT-ACAGCCGCAAGATCAGAAGTTCAGAAGCTCACAACACAACTGAAAGGAAAAAAAAATAAAAAATCAATCGCATCAATTGAGCTGCTTCCGATCCACTTGAGCCGCCGGCGATGGCGTCGAAAGTTACTGATAGGATTGAACTAGCTAAGCTTTGTAGCTCTAAGGAGTGGTCGAAAGCAATTCGAATTCTCGATTCTCTTCTTGCTCAAACTTGCGTCATTCAAGATATCTGGTCCGTTACGTTTTTCACTGTTCCATCTTTTTCCCTGTTTGTATATAGGTTTTTGGACATTTATGAATGAACTGATTAATTTTTCTGAATTTAAAATGTGTTCAATTCTTTTTCAGCAACCGAGCGTTTTGCTATAGTCAATTGGAGCTTCACAAGCATGTTATTAAGGATTGTGATAAGGCACTTCAGCTCGATCCTAAGCTTCTTCAAGCTTATATATTCAAAG</genome_strand>
        <mrna_strand>CACCCACCAAAAAAAAAAGAAAAACAGTTTTAAAAGCCGCAAGATCAGAAATTCATAAGCTCACAACACAACTGAAAGG--AAAAAAAT-AAAAATCAATCGCATCAATTGAGCTGCTTCCGATCCATTTGAGCCGCCGGCGATGGCGTCGAAAGTTACTGATAGGATTGAACTAGCTAAGCTTTGTAGCTCTAAAGAGTGGTCCAAAGCAATACGAATTCTCGATTCACTTCTTGCTCAAACTTGCGTCATTCAAGATATCTG....................................................................................................................CAACCGAGCGTTTTGCTATAGTCAATTGGAGCTTCACAAGCATGTTTTTAAGGATTGTGATAAGGCACTTCAACTCGATCCTAAGCTTTTTCAAGCTTATATATTCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E239468" ref_strand="+" ref_description="SGN-E239468 [cLED-23-J13]">
      <seq>aaaagaaaaaaaagaaaaacagttttacagccgcaagatcagaagttcagaagctcacaacacaactgaaaggaaaaaaaaataaaaaatcaatcgcatcaattgagctgcttccgatccacttgagccgccggcgatggcgtcgaaagttactgataggattgaactagctaagctttgtagctctaaggagtggtcgaaagcaattcgaattctcgattctcttcttgctcaaacttgcgtcattcaagatatctgcaaccgagcgttttgctatagtcaattggagcttcacaagcatgttattaaggattgtgataaggcacttcagctcgatcctaagcttcttcaagcttatatattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="9731" stop="8652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9431" g_stop="9174" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9173" i_stop="9058" i_length="116">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9057" g_stop="8952" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="364" r_length="106" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E239468" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9431" e_stop="9174"/>
          <exon e_start="9057" e_stop="8952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAAAAAAAAGAAAAACAGTTTTACAGCCGCAAGATCAGAAGTTCAGAAGCTCACAACACAACTGAAAGGAAAAAAAAATAAAAAATCAATCGCATCAATTGAGCTGCTTCCGATCCACTTGAGCCGCCGGCGATGGCGTCGAAAGTTACTGATAGGATTGAACTAGCTAAGCTTTGTAGCTCTAAGGAGTGGTCGAAAGCAATTCGAATTCTCGATTCTCTTCTTGCTCAAACTTGCGTCATTCAAGATATCTGGTCCGTTACGTTTTTCACTGTTCCATCTTTTTCCCTGTTTGTATATAGGTTTTTGGACATTTATGAATGAACTGATTAATTTTTCTGAATTTAAAATGTGTTCAATTCTTTTTCAGCAACCGAGCGTTTTGCTATAGTCAATTGGAGCTTCACAAGCATGTTATTAAGGATTGTGATAAGGCACTTCAGCTCGATCCTAAGCTTCTTCAAGCTTATATATTC</genome_strand>
        <mrna_strand>AAAAGAAAAAAAAGAAAAACAGTTTTACAGCCGCAAGATCAGAAGTTCAGAAGCTCACAACACAACTGAAAGGAAAAAAAAATAAAAAATCAATCGCATCAATTGAGCTGCTTCCGATCCACTTGAGCCGCCGGCGATGGCGTCGAAAGTTACTGATAGGATTGAACTAGCTAAGCTTTGTAGCTCTAAGGAGTGGTCGAAAGCAATTCGAATTCTCGATTCTCTTCTTGCTCAAACTTGCGTCATTCAAGATATCTG....................................................................................................................CAACCGAGCGTTTTGCTATAGTCAATTGGAGCTTCACAAGCATGTTATTAAGGATTGTGATAAGGCACTTCAGCTCGATCCTAAGCTTCTTCAAGCTTATATATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="17938" stop="18833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18238" g_stop="18559" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18238" e_stop="18559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACATTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGCATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACAAATATATAAATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAA-TTATACACTTCTGTGTATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="17938" stop="18833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18238" g_stop="18528" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18238" e_stop="18528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACATTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGCATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACAAATATATAAATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGA</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E392727" ref_strand="+" ref_description="SGN-E392727 [TUS-37-J5]">
      <seq>taatatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtcacgctttatacaaaatttaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="17938" stop="18688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18238" g_stop="18388" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E392727" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>151</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18238" e_stop="18388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACATTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCACAATT</genome_strand>
        <mrna_strand>TAATATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCACGCTTTATACAAAATTTAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E200845" ref_strand="+" ref_description="SGN-E200845 [cLEC-5-G3]">
      <seq>aaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaatttatacacttctgtgtatatagcgagataggcgagcgagaatggagagtggcgagcgagatttttgggagggagacgcctgacaaactttagctaacgtttgctatggagcacaattaaatcaaactctagctactccatttagttagattactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="17939" stop="18984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18239" g_stop="18685" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E200845" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18239" e_stop="18685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACATTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGCATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACAAATATATAAATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAA-TTATACACTTCTGTGTATAAAGCGAGAGAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGAGAGACG-CTGACAAATTTTAGTTAATGTTTGCTATGGAGCACAATTGAATCAAACCCTAGCTATTTTATTTAATTTAGGTTATTAA</genome_strand>
        <mrna_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAATTTATACACTTCTGTGTATATAGCGAGATAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGGGAGACGCCTGACAAACTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACTCTAGCTACTCCATTT-AGTTAGATTACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E732690" ref_strand="+" ref_description="SGN-E732690 [LB02DE03]">
      <seq>ctcttctataacgtcacatgatttcttttcttaggttcataaatacggatgactattatggaggattcgaatcggaagacatagaacaactatgtcaagcaatggagtcgaactacaaggcatgggtatctggttttgcgccactagcggtgggaggtgacatgaattccgtggcagtacaagaattcagcaggacattattcaacatgagaccagacatagcactcagtgttttccgcactgttttcacgttcgacctaaggcattatctgtcccgtgttactgtcccttgccatatcatacagagctcaatggatgttgcaatgccagtgactgtttctgaatatttacacagaaatttaggcggaaaatcgatcgtagagatcatctcaacagaaggtcatcttccacatttgagcgcacctgaggctactatccccgtattgcttcgacacatttcacatgatattactgctgatgcttcttctagttaaaggataatgaaaaaaacttcttcaaaagtactcatcatcaaaataaatatacatgtgtatttctattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="21650" stop="20490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21350" g_stop="20793" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="562" polyA_stop="571"/>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E732690" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732690" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21350" e_stop="20793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCTATAACGTCACATGATTTCTTTTCTTAGGTTCATAAATACGGATGACTATTATGGAGGATTCGAATCGGAAGACATAGAACAACTATGTCAAGCAATGGAGTCGAACTACAAGGCATGGGTATCTGGTTTTGCGCCACTAGCGGTGGGAGGTGACATGAATTCCGTGGCAGTACAAGAATTCAGCAGGACATTATTCAACATGAGACCAGACATAGCACTCAGTGTTTTCCGCACTGTTTTCACGTTCGACCTAAGGCATTATCTGTCCCGTGTTACTGTCCCTTGCCATATCATACAGAGCTCAATGGATGTTGCAATGCCAGTGACTGTTTCTGAATATTTACACAGAAATTTAGGCGGAAAATCGATCGTAGAGATCATCTCAACAGAAGGTCATCTTCCACATTTGAGCGCACCTGAGGCTACTATCCCCGTATTGCTTCGACACATTTCACATGATATTACTGCTGATGCTTCTTCTAGTTAAAGGATAATGAAAAAAACTTCTTCAAAAGTACTCATCATCAAAATAAATATACATGTGTATTTCT</genome_strand>
        <mrna_strand>CTCTTCTATAACGTCACATGATTTCTTTTCTTAGGTTCATAAATACGGATGACTATTATGGAGGATTCGAATCGGAAGACATAGAACAACTATGTCAAGCAATGGAGTCGAACTACAAGGCATGGGTATCTGGTTTTGCGCCACTAGCGGTGGGAGGTGACATGAATTCCGTGGCAGTACAAGAATTCAGCAGGACATTATTCAACATGAGACCAGACATAGCACTCAGTGTTTTCCGCACTGTTTTCACGTTCGACCTAAGGCATTATCTGTCCCGTGTTACTGTCCCTTGCCATATCATACAGAGCTCAATGGATGTTGCAATGCCAGTGACTGTTTCTGAATATTTACACAGAAATTTAGGCGGAAAATCGATCGTAGAGATCATCTCAACAGAAGGTCATCTTCCACATTTGAGCGCACCTGAGGCTACTATCCCCGTATTGCTTCGACACATTTCACATGATATTACTGCTGATGCTTCTTCTAGTTAAAGGATAATGAAAAAAACTTCTTCAAAAGTACTCATCATCAAAATAAATATACATGTGTATTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E700812" ref_strand="+" ref_description="SGN-E700812 [FA14BA01]">
      <seq>gtgaactctaaaattaacagccaccggccaatccatcttccttcgtaccaaaaagtcggctggtcgtctcctccaatttccacaccacaccttaataaagtctaaaaattgggaaacaaaaaactcagaccaaaaaatgggaatcggtgaagaagctcacaacgtaaaagttgtaggttcaggcgaaaagaccatcgtactgggtcatggcttcggcaccgatcagtctgtttggaaacagcttgttccttacctcgttgatgaatatcgtgttgtactttatgataatatgggtgctggaccgacaaatcctgattacttcgattttgatcgatattcttcccttgaaggttatgcgtacgatttaatttccattttggaggaacttcaaatcaatcgttgcatgtacttaggccattccttatcggctatgactggtgttgttgcttctatttttcgtcccgatctcttttccaaactcattcttgtatcagcttccccaaggttcataaatacggatgactattatggaggattcgaatcggaagacatagaacaactatgtcaagcaatggagtcgaactacaaggcatgggtatctggttttgcgccactagcggtgggaggtgacatgaattccgtggcagtacaagaattcagcaggacattattcaacatgagaccagacatagcactcagtgttttccgcactgttttcacgttcgacctaaggcattatctgtcccgtgttactgtcccttgccatatcatacagagctcaatggatgttgcaatgccagtgactgtttctgaatatttacacagaaatttaagcggaaaatcgatcgtagagatcatctcaacagaaggtcatcttccacatttgagcgcaccctgagctactatccccgtattgcttcgacacatttcacatgatattactgctgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="22528" stop="20570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22228" g_stop="21726" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="504" r_length="504" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21725" i_stop="21317" i_length="409">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21316" g_stop="20870" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="951" r_length="447" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E700812" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>950</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22228" e_stop="21726"/>
          <exon e_start="21316" e_stop="20870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAC-CTAAAATTAACAGCCACCGGCCAATCCATCTTCCTTCGTACCAAAAAGTCGGCTGGTCGTCTCCTCCAATTTCCACACCACACCTTAATAAAGTCTAAAAATTGGGAAACAAAAAACTCAGACCAAAAAATGGGAATCGGTGAAGAAGCTCACAACGTAAAAGTTGTAGGTTCAGGCGAAAAGACCATCGTACTGGGTCATGGCTTCGGCACCGATCAGTCTGTTTGGAAACAGCTTGTTCCTTACCTCGTTGATGAATATCGTGTTGTACTTTATGATAATATGGGTGCTGGACCGACAAATCCTGATTACTTCGATTTTGATCGATATTCTTCCCTTGAAGGTTATGCGTACGATTTAATTTCCATTTTGGAGGAACTTCAAATCAATCGTTGCATGTACTTAGGCCATTCCTTATCGGCTATGACTGGTGTTGTTGCTTCTATTTTTCGTCCCGATCTCTTTTCCAAACTCATTCTTGTATCAGCTTCCCCAAGGTGAGATAAATTGATATGTCAATTTATTTGTCTAATGAAACTTTTAAATATTTCTGTATTTAACTAAAAAACAAGAAAAGTGTTAATTAAAATGCTCGTTTAACACAAATAAATTAGAAGGAAGATGTACGTAGCATTTCCCTCTTAAACGTATTTACGATTCAGATATTTTAAATCAATCTCCTCCGTTTCTTTTGATCTTATCTAAAAAGAATCACACAACTTTTCTTTTCTTTTTTTTAAAAAAAATTCAACTTTTTTTGCCAATCACATGAATTTTCTTTTGATATTATGAAGAATTTTGCAATACTTACCATCCACCCAACACCAATAAAATTGGATTGAACGTAACCTCTGTTAACTATCCGAGCAACTCTCTTCTATAACGTCACATGATTTCTTTTCTTAGGTTCATAAATACGGATGACTATTATGGAGGATTCGAATCGGAAGACATAGAACAACTATGTCAAGCAATGGAGTCGAACTACAAGGCATGGGTATCTGGTTTTGCGCCACTAGCGGTGGGAGGTGACATGAATTCCGTGGCAGTACAAGAATTCAGCAGGACATTATTCAACATGAGACCAGACATAGCACTCAGTGTTTTCCGCACTGTTTTCACGTTCGACCTAAGGCATTATCTGTCCCGTGTTACTGTCCCTTGCCATATCATACAGAGCTCAATGGATGTTGCAATGCCAGTGACTGTTTCTGAATATTTACACAGAAATTTAGGCGGAAAATCGATCGTAGAGATCATCTCAACAGAAGGTCATCTTCCACATTTGAGCGCACCTGAGGCTACTATCCCCGTATTGCTTCGACACATTTCACATGATATTACTGCTGATGC</genome_strand>
        <mrna_strand>GTGAACTCTAAAATTAACAGCCACCGGCCAATCCATCTTCCTTCGTACCAAAAAGTCGGCTGGTCGTCTCCTCCAATTTCCACACCACACCTTAATAAAGTCTAAAAATTGGGAAACAAAAAACTCAGACCAAAAAATGGGAATCGGTGAAGAAGCTCACAACGTAAAAGTTGTAGGTTCAGGCGAAAAGACCATCGTACTGGGTCATGGCTTCGGCACCGATCAGTCTGTTTGGAAACAGCTTGTTCCTTACCTCGTTGATGAATATCGTGTTGTACTTTATGATAATATGGGTGCTGGACCGACAAATCCTGATTACTTCGATTTTGATCGATATTCTTCCCTTGAAGGTTATGCGTACGATTTAATTTCCATTTTGGAGGAACTTCAAATCAATCGTTGCATGTACTTAGGCCATTCCTTATCGGCTATGACTGGTGTTGTTGCTTCTATTTTTCGTCCCGATCTCTTTTCCAAACTCATTCTTGTATCAGCTTCCCCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATAAATACGGATGACTATTATGGAGGATTCGAATCGGAAGACATAGAACAACTATGTCAAGCAATGGAGTCGAACTACAAGGCATGGGTATCTGGTTTTGCGCCACTAGCGGTGGGAGGTGACATGAATTCCGTGGCAGTACAAGAATTCAGCAGGACATTATTCAACATGAGACCAGACATAGCACTCAGTGTTTTCCGCACTGTTTTCACGTTCGACCTAAGGCATTATCTGTCCCGTGTTACTGTCCCTTGCCATATCATACAGAGCTCAATGGATGTTGCAATGCCAGTGACTGTTTCTGAATATTTACACAGAAATTTAAGCGGAAAATCGATCGTAGAGATCATCTCAACAGAAGGTCATCTTCCACATTTGAGCGCACCCTGAGCTACTATCCCCGTATTGCTTCGACACATTTCACATGATATTACTGCTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E329412" ref_strand="+" ref_description="SGN-E329412 [cTOD-2-L8]">
      <seq>ggaatcggtgaagaatctcacaacgtaaaagttgtaggttcaggcgaaaagaccatcgtactgggtcatggcttcggcaccgatcagtctgtttggaaacagcttgttccttacctcgttgatgaatatcgtgttgtactttatgataatatgggtgctggaccgacaaatcctgattacttcgattttgatcgatattcttcccttgaaggttatgcgtacgatttaatttccattttggaggaacttcaaatcaatcgttgcatgtacttaggccattccttatcggctatgactggtgttgttgcttctatttttcgtcccgatctcttttccaaactcattcttgtatcagcttccccaaggttcataaatacggatgactattatggaggattcgaatcggaagacatagaacaactatgtcaagcaatggagtcgaactacaaggcatgggtatctggttttgcgccactagcggtgggaggtgacatgaattccgtggcagtacaagaattcagcaggacattattcaacatgagaccagacatagcactcagtgttttccgcactgttttcacgttcgacctaaagcattatctgtcccgtgttactgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="22390" stop="20765"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22090" g_stop="21726" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21725" i_stop="21317" i_length="409">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21316" g_stop="21065" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="617" r_length="252" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E329412" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22090" e_stop="21726"/>
          <exon e_start="21316" e_stop="21065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATCGGTGAAGAAGCTCACAACGTAAAAGTTGTAGGTTCAGGCGAAAAGACCATCGTACTGGGTCATGGCTTCGGCACCGATCAGTCTGTTTGGAAACAGCTTGTTCCTTACCTCGTTGATGAATATCGTGTTGTACTTTATGATAATATGGGTGCTGGACCGACAAATCCTGATTACTTCGATTTTGATCGATATTCTTCCCTTGAAGGTTATGCGTACGATTTAATTTCCATTTTGGAGGAACTTCAAATCAATCGTTGCATGTACTTAGGCCATTCCTTATCGGCTATGACTGGTGTTGTTGCTTCTATTTTTCGTCCCGATCTCTTTTCCAAACTCATTCTTGTATCAGCTTCCCCAAGGTGAGATAAATTGATATGTCAATTTATTTGTCTAATGAAACTTTTAAATATTTCTGTATTTAACTAAAAAACAAGAAAAGTGTTAATTAAAATGCTCGTTTAACACAAATAAATTAGAAGGAAGATGTACGTAGCATTTCCCTCTTAAACGTATTTACGATTCAGATATTTTAAATCAATCTCCTCCGTTTCTTTTGATCTTATCTAAAAAGAATCACACAACTTTTCTTTTCTTTTTTTTAAAAAAAATTCAACTTTTTTTGCCAATCACATGAATTTTCTTTTGATATTATGAAGAATTTTGCAATACTTACCATCCACCCAACACCAATAAAATTGGATTGAACGTAACCTCTGTTAACTATCCGAGCAACTCTCTTCTATAACGTCACATGATTTCTTTTCTTAGGTTCATAAATACGGATGACTATTATGGAGGATTCGAATCGGAAGACATAGAACAACTATGTCAAGCAATGGAGTCGAACTACAAGGCATGGGTATCTGGTTTTGCGCCACTAGCGGTGGGAGGTGACATGAATTCCGTGGCAGTACAAGAATTCAGCAGGACATTATTCAACATGAGACCAGACATAGCACTCAGTGTTTTCCGCACTGTTTTCACGTTCGACCTAAGGCATTATCTGTCCCGTGTTACTGT</genome_strand>
        <mrna_strand>GGAATCGGTGAAGAATCTCACAACGTAAAAGTTGTAGGTTCAGGCGAAAAGACCATCGTACTGGGTCATGGCTTCGGCACCGATCAGTCTGTTTGGAAACAGCTTGTTCCTTACCTCGTTGATGAATATCGTGTTGTACTTTATGATAATATGGGTGCTGGACCGACAAATCCTGATTACTTCGATTTTGATCGATATTCTTCCCTTGAAGGTTATGCGTACGATTTAATTTCCATTTTGGAGGAACTTCAAATCAATCGTTGCATGTACTTAGGCCATTCCTTATCGGCTATGACTGGTGTTGTTGCTTCTATTTTTCGTCCCGATCTCTTTTCCAAACTCATTCTTGTATCAGCTTCCCCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATAAATACGGATGACTATTATGGAGGATTCGAATCGGAAGACATAGAACAACTATGTCAAGCAATGGAGTCGAACTACAAGGCATGGGTATCTGGTTTTGCGCCACTAGCGGTGGGAGGTGACATGAATTCCGTGGCAGTACAAGAATTCAGCAGGACATTATTCAACATGAGACCAGACATAGCACTCAGTGTTTTCCGCACTGTTTTCACGTTCGACCTAAAGCATTATCTGTCCCGTGTTACTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E732249" ref_strand="+" ref_description="SGN-E732249 [LB01CF10]">
      <seq>cgtttaagagggacatgctacgtacatcttccttctaatttatttgtgttaaacgagcattttaattaacacttttcttgttttttagttaaatacagaaatatttaaaagtttcattagacaaataaattgacatatcaatttatctcaccttggggaagctgatacaagaatgagtttggaaaagagatcgggacgaaaaatagaagcaacaacaccagtcatagccgataaggaatggcctaagtacatgcaacgattgatttgaagttcctccaaaatggaaattaaatcgtacgcataaccttcaagggaagaatatcgatcaaaatcgaagtaatcaggatttgtcggtccagcacccatattatcataaagtacaacacgatattcatcaacgaggtaaggaacaagctgtttccaaacagactgatcggtgccgaagccatgacccagtacgatggtcttttcgcctgaacctacaacttttacgttgtgagcttcttcaccgattcccattttttggtctgagttttttgtttcccaatttttagactttattaaggtgtggtgtggaaattggaggagacgaccagccgactttttggtacgaaggaagatggattggccggtggctgttaattttaggttcacaaatcataacattagtattgcaagagtgctaattaatggaagggtttttatggttatcaagttattgaaatactttagtaaagttactttatctgttttatgctaaaataaaagtcacacatattttttactataataaaatattaataacttctaccgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="21275" stop="22700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21575" g_stop="22399" g_length="825"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="825" r_length="825" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E732249" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>825</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732249" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21575" e_stop="22399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTTAAGAGGGAAATGCTACGTACATCTTCCTTCTAATTTATTTGTGTTAAACGAGCATTTTAATTAACACTTTTCTTGTTTTTTAGTTAAATACAGAAATATTTAAAAGTTTCATTAGACAAATAAATTGACATATCAATTTATCTCACCTTGGGGAAGCTGATACAAGAATGAGTTTGGAAAAGAGATCGGGACGAAAAATAGAAGCAACAACACCAGTCATAGCCGATAAGGAATGGCCTAAGTACATGCAACGATTGATTTGAAGTTCCTCCAAAATGGAAATTAAATCGTACGCATAACCTTCAAGGGAAGAATATCGATCAAAATCGAAGTAATCAGGATTTGTCGGTCCAGCACCCATATTATCATAAAGTACAACACGATATTCATCAACGAGGTAAGGAACAAGCTGTTTCCAAACAGACTGATCGGTGCCGAAGCCATGACCCAGTACGATGGTCTTTTCGCCTGAACCTACAACTTTTACGTTGTGAGCTTCTTCACCGATTCCCATTTTTTGGTCTGAGTTTTTTGTTTCCCAATTTTTAGACTTTATTAAGGTGTGGTGTGGAAATTGGAGGAGACGACCAGCCGACTTTTTGGTACGAAGGAAGATGGATTGGCCGGTGGCTGTTAATTTTAGGTTCACAAATCATAACATTAGTATTGCAAGAGTGCTAATTAATGGAAGGGTTTTTATGGTTATCAAGTTATTGAAATACTTTAGTAAAGTTACTTTATCTGTTTTATGCTAAAATAAAAGTCACACATATTTTTTACTATAATAAAATATTAATAACTTCTACCGAAAAACACTAGA</genome_strand>
        <mrna_strand>CGTTTAAGAGGGACATGCTACGTACATCTTCCTTCTAATTTATTTGTGTTAAACGAGCATTTTAATTAACACTTTTCTTGTTTTTTAGTTAAATACAGAAATATTTAAAAGTTTCATTAGACAAATAAATTGACATATCAATTTATCTCACCTTGGGGAAGCTGATACAAGAATGAGTTTGGAAAAGAGATCGGGACGAAAAATAGAAGCAACAACACCAGTCATAGCCGATAAGGAATGGCCTAAGTACATGCAACGATTGATTTGAAGTTCCTCCAAAATGGAAATTAAATCGTACGCATAACCTTCAAGGGAAGAATATCGATCAAAATCGAAGTAATCAGGATTTGTCGGTCCAGCACCCATATTATCATAAAGTACAACACGATATTCATCAACGAGGTAAGGAACAAGCTGTTTCCAAACAGACTGATCGGTGCCGAAGCCATGACCCAGTACGATGGTCTTTTCGCCTGAACCTACAACTTTTACGTTGTGAGCTTCTTCACCGATTCCCATTTTTTGGTCTGAGTTTTTTGTTTCCCAATTTTTAGACTTTATTAAGGTGTGGTGTGGAAATTGGAGGAGACGACCAGCCGACTTTTTGGTACGAAGGAAGATGGATTGGCCGGTGGCTGTTAATTTTAGGTTCACAAATCATAACATTAGTATTGCAAGAGTGCTAATTAATGGAAGGGTTTTTATGGTTATCAAGTTATTGAAATACTTTAGTAAAGTTACTTTATCTGTTTTATGCTAAAATAAAAGTCACACATATTTTTTACTATAATAAAATATTAATAACTTCTACCGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E453674" ref_strand="+" ref_description="SGN-E453674 [cSTS-20-D8]">
      <seq>tttttgatatttgcatcggatggcctatgggatcaactaagcgatgacgaagctgtggatattgttttgaagaatcctagaagtggaatagcaaaacgattagtgagaagctgcccttgagggggctgcagagaagaaaagaaatgagatacgaggacatcaaacgactagagaagggggaaaggcggcatgttcacgatgatatcacagttattgtgatatatttggatcgccctggaaggtccacaaattctggaatgaatattgttaagggcacgaacgtccctcttgacatatactccttgaactctggtcatcagttagagaacacatcttaagtttctccatgaaaagtgtctagtacatgtatacattatatatatcattttgtaaatacgtcgtcttaaacttggagagtttctttatatacttctagataacaatcagaaggaccaaccatgtacatatacctttgatgtacatgtaccttctgntattggttttgatagaccaagctgatgacaaaactagcttgagcttttacttctgtttttgacacttctgctttaagtcccgttgtttgtaccttgntatactttcctggcaattatactacaacttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="24438" stop="23014"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24138" g_stop="24055" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24054" i_stop="23847" i_length="208">
            <donor d_prob="0.804" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23846" g_stop="23309" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="623" r_length="539" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E453674" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E453674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24138" e_stop="24055"/>
          <exon e_start="23846" e_stop="23309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGATATTTGCATCGGATGGCCTATGGGATCAACTAACCGATGACGAAGCTAAGGATATTGTTTTGAAGAATCCTAGAATTGTGAGTATCGACCCCTCCTATTCTATCACATTCTTTAATTTTTGGAAACAGTACGTACCCTCATCCATTTTGTTATCTGTAAAGTGGATGCAGGCTCTTATGATAACTAGACTCTCCTTGAAGTAATTTTGTGATCAAACTTCTCCTTCATGTTGGGCATAATTAACTAATGAATAAGATAACTGTGTTTTCTTCCTCATTTCTCCAGGGAATAGCAAAACGATTAGTGAG-AGCTGCCCTTGAGGGTGCTGCAGAGAAG-AAAGAAATGAGATATGAGGACATCAAACGACTAGAGAAGGGGGAAAGGCGGCACGTTCATGATGATATCACAGTTATTGTGATATATTTGGATCACCCTGGAAGGTCCTCAAATTCTGGAATTAACATTGTTAAGGGCACGAATGTCCCTCTTGACATATACTCCTTGAACTCGGGTCATTAAGGAGAGAACATATCTTATGTTTCCCCATGAAAAGTGTCTAATACATGTATACATTATATATACCATTTTGTAAATACGTCGTCTAAAACTTGGAGAGTTTCTTTATATACTTTTAGATAACAATCAGAAGGGCCAACCATGTACATTTACC-TTGATGTACACGTACCTTCTG-TATTGGAGTTGATAGACTAAGCTGGTGACAAAACCAGCTTGAGCTTATACTTCTTTTTTTGACACTTCTGCTTAAAGCCCTGTTTGTTTGTACCTTGTTATACTTTCCTGGCAATTATACTACAACTCTTCA</genome_strand>
        <mrna_strand>TTTTTGATATTTGCATCGGATGGCCTATGGGATCAACTAAGCGATGACGAAGCTGTGGATATTGTTTTGAAGAATCCTAGAAGT................................................................................................................................................................................................................GGAATAGCAAAACGATTAGTGAGAAGCTGCCCTTGAGGGGGCTGCAGAGAAGAAAAGAAATGAGATACGAGGACATCAAACGACTAGAGAAGGGGGAAAGGCGGCATGTTCACGATGATATCACAGTTATTGTGATATATTTGGATCGCCCTGGAAGGTCCACAAATTCTGGAATGAATATTGTTAAGGGCACGAACGTCCCTCTTGACATATACTCCTTGAACTCTGGTCATCAGTTAGAGAACACATCTTAAGTTTCTCCATGAAAAGTGTCTAGTACATGTATACATTATATATATCATTTTGTAAATACGTCGTCTTAAACTTGGAGAGTTTCTTTATATACTTCTAGATAACAATCAGAAGGACCAACCATGTACATATACCTTTGATGTACATGTACCTTCTGNTATTGGTTTTGATAGACCAAGCTGATGACAAAACTAGCTTGAGCTTTTACTTCTGTTTTTGACACTTCTGCTTTAAGTCCCG-TTGTTTGTACCTTGNTATACTTTCCTGGCAATTATACTACAA--CTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733260" ref_strand="+" ref_description="SGN-E733260 [LB04BF04]">
      <seq>cgcttgttgtctatttggagcaatctcaaaagatgaattgtatgtggcaaatcttggggactccagggcagtgcttggcaggagagcagagacaggccagacgggtgattcagcagtagtagtggcagaacgtttgtcgatagatcataatgttggggttgaggaggttaggaaggaggtagaggcactgcatccagatgattctcatgttgtggtctacgttcgaggggtttggagaattaagggtataattcaggtttctagatcaattggtgatgtctatctgaagaaacctgagtttaatagagatcctatgttcatacaatatggatatcctattcctttaaaaagagctgtaatgtcagcagagccctccatattgatccgaaagataagaccagaagacttatttttgatatttgcatcggatggcctatgggatcaactaaccgatgacgaagctaaggatattgttttgaagaatcctagaattggaatagcaaaacgattagtgagagctgcccttgagggtgctgcagagaagaaagaaatgagatatgaggacatcaaacgactagagaagggggaaaggcggcacgttcatgatgatatcacagttattgtgatatatttggatcaccctggaaggtcctcaaattctggaattaacattgttaagggcacgaatgtccctcttgacatatactccttgaactcgggtcattaaggagagaacatatcttatgtttccccatgaaaagtgtctaatacatgtatacattatatataccattttgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="26148" stop="23237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25850" g_stop="25595" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25594" i_stop="24292" i_length="1303">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24291" g_stop="24055" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="493" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24054" i_stop="23847" i_length="208">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23846" g_stop="23531" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="809" r_length="316" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E733260" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25850" e_stop="25595"/>
          <exon e_start="24291" e_stop="24055"/>
          <exon e_start="23846" e_stop="23531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTGTTGTCTATTTGGAGCAATCTCAAAAGATGAATTGTATGTGGCAAATCTTGGGGACTCCAGGGCAGTGCTTGGCAGGAGAGCAGAGACAGGCCAGACGGGTGATTCAGCAGTAGTAGTGGCAGAACGTTTGTCGATAGATCATAATGTTGGGGTTGAGGAGGTTAGGAAGGAGGTAGAGGCACTGCATCCAGATGATTCTCATGTTGTGGTCTACGTTCGAGGGGTTTGGAGAATTAAGGGTATAATTCAGGTATCTGTTCTCAATCCTCTTTTCTTCTGTCCTATTAATGCAGTCGACAGTTTTGATTAGACATTTAACCATTCAAGGTTATTAAATTTGTTTACTAGCCTTCATGATATTCAGTAGAATTAATACATCTTTTCAGACCTGCAGCCATGATGAATCAGACCTCCACTTGAAGAAAGCTAATTAGTCCTTTCTGAAATGCGGTTTTGTTATGACTAGGTGGCGTCTGAGAATGTTAATAGTTTCTATTCAATCTAAAGTACATATGGTGGAAGGAGAAAATAGTCAGAGCTCTTTCATTCTCAATTCTGACTTCCGTTAAGTTTACAGTGGTCCATCTGTTGTTACCTCTTAGCTGTCTAGATACGCTAATGTTCTGAAAGTAAGAAAGTTATGGAAGCTAGACAACAAAGAAGACCTAAGTCTTTTTTTTCTGATCTCTGGTTTGTCGTCACACACAAATACAAAGATTCATATTTATGTAGTTAGAAACAATTCGCCTTTCTGTTGCTCGAGCATGTTATGAAGGTGGTCCAAAATCTCCGGGAACTCATAGTTGAGGCTTCTAAATAAGTCACTTTATATATGCTAATTATGTGTGTGCACTCATAGCAAGTTGATCATACCTTTTAGACGTGGTGTATGTCAAGTCTTTCTGGGGTGCCTCTTTTGTGTGTTGGCATAAAGTATGCTTTCATCTACTTTTTCTGAGGTTATAGACCGTATGTTTAAATTTTGTCCTTTTAGCTTCTTAGCCAATCACATTATAATTTATACCCTTGTCAAAAAAAAACATGTCACTTCATATGTTGATTATGTAGATTTGTGTGTCTAGTTCTTTTGGAGAATAAACATCTTTTTATCTTCTACTTTTTAAGATTTTAGACCTTGTGTATAAGCAATTTCTCCTTTTCAATCTAGTAAAAGACACATCAGTGTCAAGATTTACAAGTTTGCACCTATGGGATTCACATCAAGGCAAAAACATTTTGTTGCATGTGAAGTAATTTTGTTTTACGCATGGACACAAAGGAATGTCCTTTCCCGTTTATCCCTTCGCTCTTAACCACTTACTAGCAATCTTTTATCTTTTGGTAACTACAATTTGTAGCAGCGGCTGCATGATACTTATCTTTCCATCTGTATCCTTCATTTTAACTTCAGCAAGGTTCCCTTGTTATATGAAAAATGCCAAATAAAGTCTGAAGCTGACTGTTTTCGTTAAAAGCTTGCAAGCAGCCAATATCAGGGAGCAATCCTATGTTTTGAGAAAATCCATCTCATATTGCCTATTTATCTGTACCAGGTTTCTAGATCAATTGGTGATGTCTATCTGAAGAAACCTGAGTTTAATAGAGATCCTATGTTCATACAATATGGATATCCTATTCCTTTAAAAAGAGCTGTAATGTCAGCAGAGCCCTCCATATTGATCCGAAAGATAAGACCAGAAGACTTATTTTTGATATTTGCATCGGATGGCCTATGGGATCAACTAACCGATGACGAAGCTAAGGATATTGTTTTGAAGAATCCTAGAATTGTGAGTATCGACCCCTCCTATTCTATCACATTCTTTAATTTTTGGAAACAGTACGTACCCTCATCCATTTTGTTATCTGTAAAGTGGATGCAGGCTCTTATGATAACTAGACTCTCCTTGAAGTAATTTTGTGATCAAACTTCTCCTTCATGTTGGGCATAATTAACTAATGAATAAGATAACTGTGTTTTCTTCCTCATTTCTCCAGGGAATAGCAAAACGATTAGTGAGAGCTGCCCTTGAGGGTGCTGCAGAGAAGAAAGAAATGAGATATGAGGACATCAAACGACTAGAGAAGGGGGAAAGGCGGCACGTTCATGATGATATCACAGTTATTGTGATATATTTGGATCACCCTGGAAGGTCCTCAAATTCTGGAATTAACATTGTTAAGGGCACGAATGTCCCTCTTGACATATACTCCTTGAACTCGGGTCATTAAGGAGAGAACATATCTTATGTTTCCCCATGAAAAGTGTCTAATACATGTATACATTATATATACCATTTTGTAAATACGTCGT</genome_strand>
        <mrna_strand>CGCTTGTTGTCTATTTGGAGCAATCTCAAAAGATGAATTGTATGTGGCAAATCTTGGGGACTCCAGGGCAGTGCTTGGCAGGAGAGCAGAGACAGGCCAGACGGGTGATTCAGCAGTAGTAGTGGCAGAACGTTTGTCGATAGATCATAATGTTGGGGTTGAGGAGGTTAGGAAGGAGGTAGAGGCACTGCATCCAGATGATTCTCATGTTGTGGTCTACGTTCGAGGGGTTTGGAGAATTAAGGGTATAATTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTAGATCAATTGGTGATGTCTATCTGAAGAAACCTGAGTTTAATAGAGATCCTATGTTCATACAATATGGATATCCTATTCCTTTAAAAAGAGCTGTAATGTCAGCAGAGCCCTCCATATTGATCCGAAAGATAAGACCAGAAGACTTATTTTTGATATTTGCATCGGATGGCCTATGGGATCAACTAACCGATGACGAAGCTAAGGATATTGTTTTGAAGAATCCTAGAATT................................................................................................................................................................................................................GGAATAGCAAAACGATTAGTGAGAGCTGCCCTTGAGGGTGCTGCAGAGAAGAAAGAAATGAGATATGAGGACATCAAACGACTAGAGAAGGGGGAAAGGCGGCACGTTCATGATGATATCACAGTTATTGTGATATATTTGGATCACCCTGGAAGGTCCTCAAATTCTGGAATTAACATTGTTAAGGGCACGAATGTCCCTCTTGACATATACTCCTTGAACTCGGGTCATTAAGGAGAGAACATATCTTATGTTTCCCCATGAAAAGTGTCTAATACATGTATACATTATATATACCATTTTGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E204684" ref_strand="+" ref_description="SGN-E204684 [cLEC-14-H3]">
      <seq>tggacttgaagccacatgccacaggtgaatattctgttgctgtagttcaggccaattctttgcttgaagatcaaggtcaagtttttacaacccctagtgctacttatgtgggtgtttatgatggtcatggtggcccgcaagcttctcgcttcatcaacaacaatctcttccctcaactacaaaagctggctttggaagaaggaggattgtctgaggacgtgatcaggaaagcatttgatgctattgaggagggattcttgcgtttggtgaaacagtcttggctggatcaacctcagattgcatctgcagggtcttgttgtctatttggagcaatctcaaaagatgaattgtatgtggcaaatcttggggactccagggcagtgcttggcaggagagcagagacaggccagacgggtgattcagcagtagtagtggcagaacgtttgtcgatagatcataatgttggggttgaggaggttaggaaggaggtagaggcactgcatccagatgattctcatgttgtggtctacgttcgaggggtttggagaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="26827" stop="25311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26527" g_stop="26345" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26344" i_stop="25978" i_length="367">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25977" g_stop="25611" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="550" r_length="367" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E204684" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26527" e_stop="26345"/>
          <exon e_start="25977" e_stop="25611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACTTGAAGCCACATGCCACAGGTGAATATTCTGTTGCTGTAGTTCAGGCCAATTCTTTGCTTGAAGATCAAGGTCAAGTTTTTACAACCCCTAGTGCTACTTATGTGGGTGTTTATGATGGTCATGGTGGCCCGCAAGCTTCTCGCTTCATCAACAACAATCTCTTCCCTCAACTACAAAGTATGTACTATTTCTTGATACTATTTTACTACTATGAAAGATTGGGTTCACTCTGTTTCTTGTCAGTGGGGTCTAATAGCAAAACTATGCTAGTGCAAATTTTCTAATTTTATATTTCTAAACCTATAATTTTTTTTGACTTCTTGATTGTTGGTTTATGTGGTGTGTTTAGTTAGTATGTTGAAATTATCATGAGATTGATCAGGGGAGGCTGGGAGAAAATTGACTTGGTCATGCGTGGAGTAGAGGAGAAAAAGGAATTGAGCTTGTTCAAATTGTAGACATGTTTAATTTTTGAATGTTTGAAATAGGTGTAATTAGAGATATCATTTTGTGTTTGATTTCCTTGTTTTTTCGATTATTATAGAGCTGGCTTTGGAAGAAGGAGGATTGTCTGAGGACGTGATCAGGAAAGCATTTGATGCTATTGAGGAGGGATTCTTGCGTTTGGTGAAACAGTCTTGGCTGGATCAACCTCAGATTGCATCTGCAGGGTCTTGTTGTCTATTTGGAGCAATCTCAAAAGATGAATTGTATGTGGCAAATCTTGGGGACTCCAGGGCAGTGCTTGGCAGGAGAGCAGAGACAGGCCAGACGGGTGATTCAGCAGTAGTAGTGGCAGAACGTTTGTCGATAGATCATAATGTTGGGGTTGAGGAGGTTAGGAAGGAGGTAGAGGCACTGCATCCAGATGATTCTCATGTTGTGGTCTACGTTCGAGGGGTTTGGAGAAT</genome_strand>
        <mrna_strand>TGGACTTGAAGCCACATGCCACAGGTGAATATTCTGTTGCTGTAGTTCAGGCCAATTCTTTGCTTGAAGATCAAGGTCAAGTTTTTACAACCCCTAGTGCTACTTATGTGGGTGTTTATGATGGTCATGGTGGCCCGCAAGCTTCTCGCTTCATCAACAACAATCTCTTCCCTCAACTACAAA...............................................................................................................................................................................................................................................................................................................................................................................AGCTGGCTTTGGAAGAAGGAGGATTGTCTGAGGACGTGATCAGGAAAGCATTTGATGCTATTGAGGAGGGATTCTTGCGTTTGGTGAAACAGTCTTGGCTGGATCAACCTCAGATTGCATCTGCAGGGTCTTGTTGTCTATTTGGAGCAATCTCAAAAGATGAATTGTATGTGGCAAATCTTGGGGACTCCAGGGCAGTGCTTGGCAGGAGAGCAGAGACAGGCCAGACGGGTGATTCAGCAGTAGTAGTGGCAGAACGTTTGTCGATAGATCATAATGTTGGGGTTGAGGAGGTTAGGAAGGAGGTAGAGGCACTGCATCCAGATGATTCTCATGTTGTGGTCTACGTTCGAGGGGTTTGGAGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E335131" ref_strand="+" ref_description="SGN-E335131 [cTOE-1-G6]">
      <seq>ttttttttttttttcttcaaaaaaaaaaaaaatcctctttcactctacagccagcagtctaagatgttaagctcctgttttgggagctgctttggtggggacgatggtgatgatcttttatggcatatggacttgaagccacatgccacaggtgaatattctgttgctgtagttcaggccaattctttgcttgaagatcaaggtcaagtttttacaacccctagtgctacttatgtgggtgtttatgatggtcatggtggcccgcaagcttctcgcttcatcaacaacaatctcttccctcaactacaaaagctggctttggaagaaggaggattgtctgaggacgtgatcaggaaagcatttgatgctattgaggagggattcttgcgtttggtgaaacagtcttggctggatcaacctcagattgcatctgcagggtcttgttgtctatttggagcaatctcaaaagatgaattgtatgtggcaaatcttggggactccagggcagtgcttggcaggagagcagagacaggccagacgggtgattcagcagtagtagtggcagaacgtttgtcgatagatcataatgttgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="26954" stop="25393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26655" g_stop="26345" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26344" i_stop="25978" i_length="367">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25977" g_stop="25693" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="595" r_length="285" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E335131" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26655" e_stop="26345"/>
          <exon e_start="25977" e_stop="25693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTCTTTCTTTTCTTCAAAAAAAAAAAAAAATCCTCTTTCACTCTACAGCCAGCAGTCTAAGATGTTAAGCTCCTGTTTTGGGAGCTGCTTTGGTGGGGACGATGGTGATGATCTTTTATGGCATATGGACTTGAAGCCACATGCCACAGGTGAATATTCTGTTGCTGTAGTTCAGGCCAATTCTTTGCTTGAAGATCAAGGTCAAGTTTTTACAACCCCTAGTGCTACTTATGTGGGTGTTTATGATGGTCATGGTGGCCCGCAAGCTTCTCGCTTCATCAACAACAATCTCTTCCCTCAACTACAAAGTATGTACTATTTCTTGATACTATTTTACTACTATGAAAGATTGGGTTCACTCTGTTTCTTGTCAGTGGGGTCTAATAGCAAAACTATGCTAGTGCAAATTTTCTAATTTTATATTTCTAAACCTATAATTTTTTTTGACTTCTTGATTGTTGGTTTATGTGGTGTGTTTAGTTAGTATGTTGAAATTATCATGAGATTGATCAGGGGAGGCTGGGAGAAAATTGACTTGGTCATGCGTGGAGTAGAGGAGAAAAAGGAATTGAGCTTGTTCAAATTGTAGACATGTTTAATTTTTGAATGTTTGAAATAGGTGTAATTAGAGATATCATTTTGTGTTTGATTTCCTTGTTTTTTCGATTATTATAGAGCTGGCTTTGGAAGAAGGAGGATTGTCTGAGGACGTGATCAGGAAAGCATTTGATGCTATTGAGGAGGGATTCTTGCGTTTGGTGAAACAGTCTTGGCTGGATCAACCTCAGATTGCATCTGCAGGGTCTTGTTGTCTATTTGGAGCAATCTCAAAAGATGAATTGTATGTGGCAAATCTTGGGGACTCCAGGGCAGTGCTTGGCAGGAGAGCAGAGACAGGCCAGACGGGTGATTCAGCAGTAGTAGTGGCAGAACGTTTGTCGATAGATCATAATGTTGGGG</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTCTTC-AAAAAAAAAAAAAATCCTCTTTCACTCTACAGCCAGCAGTCTAAGATGTTAAGCTCCTGTTTTGGGAGCTGCTTTGGTGGGGACGATGGTGATGATCTTTTATGGCATATGGACTTGAAGCCACATGCCACAGGTGAATATTCTGTTGCTGTAGTTCAGGCCAATTCTTTGCTTGAAGATCAAGGTCAAGTTTTTACAACCCCTAGTGCTACTTATGTGGGTGTTTATGATGGTCATGGTGGCCCGCAAGCTTCTCGCTTCATCAACAACAATCTCTTCCCTCAACTACAAA...............................................................................................................................................................................................................................................................................................................................................................................AGCTGGCTTTGGAAGAAGGAGGATTGTCTGAGGACGTGATCAGGAAAGCATTTGATGCTATTGAGGAGGGATTCTTGCGTTTGGTGAAACAGTCTTGGCTGGATCAACCTCAGATTGCATCTGCAGGGTCTTGTTGTCTATTTGGAGCAATCTCAAAAGATGAATTGTATGTGGCAAATCTTGGGGACTCCAGGGCAGTGCTTGGCAGGAGAGCAGAGACAGGCCAGACGGGTGATTCAGCAGTAGTAGTGGCAGAACGTTTGTCGATAGATCATAATGTTGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E336900" ref_strand="+" ref_description="SGN-E336900 [cTOE-5-N7]">
      <seq>ttttttttttttttcttcaaaaaaaaaaaaaatcctctttcactctacagccagcagtctaagatgttaagctcctgttttgggagctgctttggtggggacgatggtgatgatcttttatggcatatggacttgaagccacatgccacaggtgaatattctgttgctgtagttcaggccaattctttgcttgaagatcaaggtcaagtttttacaacccctagtgctacttatgtgggtgtttatgatggtcatggtggcccgcaagcttctcgcttcatcaacaacaatctcttccctcaactacaaaagctggctttggaagaaggaggattgtctgaggacgtgatcaggaaagcatttgatgctattgaggagggattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="26954" stop="25602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26655" g_stop="26345" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26344" i_stop="25978" i_length="367">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25977" g_stop="25902" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="386" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E336900" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26655" e_stop="26345"/>
          <exon e_start="25977" e_stop="25902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTCTTTCTTTTCTTCAAAAAAAAAAAAAAATCCTCTTTCACTCTACAGCCAGCAGTCTAAGATGTTAAGCTCCTGTTTTGGGAGCTGCTTTGGTGGGGACGATGGTGATGATCTTTTATGGCATATGGACTTGAAGCCACATGCCACAGGTGAATATTCTGTTGCTGTAGTTCAGGCCAATTCTTTGCTTGAAGATCAAGGTCAAGTTTTTACAACCCCTAGTGCTACTTATGTGGGTGTTTATGATGGTCATGGTGGCCCGCAAGCTTCTCGCTTCATCAACAACAATCTCTTCCCTCAACTACAAAGTATGTACTATTTCTTGATACTATTTTACTACTATGAAAGATTGGGTTCACTCTGTTTCTTGTCAGTGGGGTCTAATAGCAAAACTATGCTAGTGCAAATTTTCTAATTTTATATTTCTAAACCTATAATTTTTTTTGACTTCTTGATTGTTGGTTTATGTGGTGTGTTTAGTTAGTATGTTGAAATTATCATGAGATTGATCAGGGGAGGCTGGGAGAAAATTGACTTGGTCATGCGTGGAGTAGAGGAGAAAAAGGAATTGAGCTTGTTCAAATTGTAGACATGTTTAATTTTTGAATGTTTGAAATAGGTGTAATTAGAGATATCATTTTGTGTTTGATTTCCTTGTTTTTTCGATTATTATAGAGCTGGCTTTGGAAGAAGGAGGATTGTCTGAGGACGTGATCAGGAAAGCATTTGATGCTATTGAGGAGGGATTCTT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTCTTC-AAAAAAAAAAAAAATCCTCTTTCACTCTACAGCCAGCAGTCTAAGATGTTAAGCTCCTGTTTTGGGAGCTGCTTTGGTGGGGACGATGGTGATGATCTTTTATGGCATATGGACTTGAAGCCACATGCCACAGGTGAATATTCTGTTGCTGTAGTTCAGGCCAATTCTTTGCTTGAAGATCAAGGTCAAGTTTTTACAACCCCTAGTGCTACTTATGTGGGTGTTTATGATGGTCATGGTGGCCCGCAAGCTTCTCGCTTCATCAACAACAATCTCTTCCCTCAACTACAAA...............................................................................................................................................................................................................................................................................................................................................................................AGCTGGCTTTGGAAGAAGGAGGATTGTCTGAGGACGTGATCAGGAAAGCATTTGATGCTATTGAGGAGGGATTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E213290" ref_strand="+" ref_description="SGN-E213290 [cLEC-71-C16]">
      <seq>cattttctctgaaaaacaagagagtgacttttatgtatatgtaatacgaagatgaagagctgtaatatcaatggctactggtttaatccgacgagctatttatagggttcagtcatcttcgccggcggcgaggctacttgttgcccgagctcacgcttcggacaccaaatcccagcaggtccaacctcaagtcgtttcaaatttaccgatggaatccagataacccagggaaacccgagctccaagaatacaaaattgatctgaaggaatgtggccctatggtcttagacgccctaatcaaaatcaagaatgaagttgacccttcaccaaccttcagaagatcttgcagagaagggatctgtgggtcctgtgccatgaacatcgacggctgtaatggactcgcttgtttgacaaagatctcatcggattctgtatcgacgattacgccactgccacatatgtttgtgattaaggatttggtagtggatatgactaatttttataatcagtataagtctattgagccttggctgaagagaaaacacctgcgccaacgcctggaaaggagatacctcagagcaagagcgataaggctaagttggatgggatgtacgagtgtattctctgtgcttgntgtagtacatcatgccctagctactggtggaatcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="27162" stop="28433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27462" g_stop="28133" g_length="672"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="671" r_length="671" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E213290" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27462" e_stop="28133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTCTCTGAAAAACAAGAGAGTGACTTTTATGTATATGTAATACGAAGATGAAGAGCTGTAATATCAATGGCTACTGGTTTAATCCGACGAGCTATTTATAGGGTTCAGTCATCTTCGCCGGCGGCGAGGCTACTTGTTGCCCGAGCTCACGCTTCGGACACCAAATCCCAGCAGGTCCAACCTCAAGTCGTTTCAAATTTACCGATGGAATCCAGATAACCCAGGGAAACCCGAGCTCCAAGAATACAAAATTGATCTGAAGGAATGTGGCCCTATGGTCTTAGACGCCCTAATCAAAATCAAGAATGAAGTTGACCCTTCACCAACCTTCAGAAGATCTTGCAGAGAAGGGATCTGTGGGTCCTGTGCCATGAACATCGACGGCTGTAATGGACTCGCTTGTTTGACAAAGATCTCATCGGATTCTGTATCGACGATTACGCCACTGCCACATATGTTTGTGATTAAGGATTTGGTAGTGGATATGACTAATTTTTATAATCAGTATAAGTCTATTGAGCCTTGGCTGAAGAGAAAAACACCTGCGCCAACGCCTGGAAAGGAGATACCTCAGAGCAAGAGCGATAAGGCTAAGTTGGATGGGATGTACGAGTGTATTCTCTGTGCTTGTTGTAGTACATCATGCCCTAGCTACTGGTGGAATCCTG</genome_strand>
        <mrna_strand>CATTTTCTCTGAAAAACAAGAGAGTGACTTTTATGTATATGTAATACGAAGATGAAGAGCTGTAATATCAATGGCTACTGGTTTAATCCGACGAGCTATTTATAGGGTTCAGTCATCTTCGCCGGCGGCGAGGCTACTTGTTGCCCGAGCTCACGCTTCGGACACCAAATCCCAGCAGGTCCAACCTCAAGTCGTTTCAAATTTACCGATGGAATCCAGATAACCCAGGGAAACCCGAGCTCCAAGAATACAAAATTGATCTGAAGGAATGTGGCCCTATGGTCTTAGACGCCCTAATCAAAATCAAGAATGAAGTTGACCCTTCACCAACCTTCAGAAGATCTTGCAGAGAAGGGATCTGTGGGTCCTGTGCCATGAACATCGACGGCTGTAATGGACTCGCTTGTTTGACAAAGATCTCATCGGATTCTGTATCGACGATTACGCCACTGCCACATATGTTTGTGATTAAGGATTTGGTAGTGGATATGACTAATTTTTATAATCAGTATAAGTCTATTGAGCCTTGGCTGAAGAG-AAAACACCTGCGCCAACGCCTGGAAAGGAGATACCTCAGAGCAAGAGCGATAAGGCTAAGTTGGATGGGATGTACGAGTGTATTCTCTGTGCTTGNTGTAGTACATCATGCCCTAGCTACTGGTGGAATCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E395611" ref_strand="+" ref_description="SGN-E395611 [TUS-16-H20]">
      <seq>ttttttccgacgagctatttatagggttcagtcatcttcgccggcggcgaggctacttgttgcccgagctcacgcttcggacaccaaatcccagcaggtccaacctcaagtcgtttcaaatttaccgatggaatccagataacccagggaaacccgagctccaagaatacaaaattgatctgaaggaatgtggccctatggtcttagacgccctaatcaaaatcaagaatgaagttgacccttcaccaaccttcataagatcttgcagagaagggatctgtgggtcctgtgccatgaacatcgacggctgtaatggactcgcttgtttgacaaagatctcatcggattctgtatcgacgattacgccactgccacatatgtttgtgattaaggatttggtagtggatatgactaatttttataatcagtataagtctattgagccttggctgaagagaaaaacacctgcgccaacgcctggaaaggagatacctcagagcaagagcgataaggctaagttggatgggatgtacgagtgtattctctgtgcttgttgtagtacatcatgccctagctactggtggaatcctgagtcttatcttggtcctgctgcactactcctgccaatagatggatcatggatagccgtggtgaacctactctggaacgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="27243" stop="29888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27543" g_stop="28173" g_length="631"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="630" r_length="630" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28174" i_stop="29546" i_length="1373">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29547" g_stop="29588" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="672" r_length="42" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E395611" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27543" e_stop="28173"/>
          <exon e_start="29547" e_stop="29588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATCCGACGAGCTATTTATAGGGTTCAGTCATCTTCGCCGGCGGCGAGGCTACTTGTTGCCCGAGCTCACGCTTCGGACACCAAATCCCAGCAGGTCCAACCTCAAGTCGTTTCAAATTTACCGATGGAATCCAGATAACCCAGGGAAACCCGAGCTCCAAGAATACAAAATTGATCTGAAGGAATGTGGCCCTATGGTCTTAGACGCCCTAATCAAAATCAAGAATGAAGTTGACCCTTCACCAACCTTCAGAAGATCTTGCAGAGAAGGGATCTGTGGGTCCTGTGCCATGAACATCGACGGCTGTAATGGACTCGCTTGTTTGACAAAGATCTCATCGGATTCTGTATCGACGATTACGCCACTGCCACATATGTTTGTGATTAAGGATTTGGTAGTGGATATGACTAATTTTTATAATCAGTATAAGTCTATTGAGCCTTGGCTGAAGAGAAAAACACCTGCGCCAACGCCTGGAAAGGAGATACCTCAGAGCAAGAGCGATAAGGCTAAGTTGGATGGGATGTACGAGTGTATTCTCTGTGCTTGTTGTAGTACATCATGCCCTAGCTACTGGTGGAATCCTGAGTCTTATCTTGGTCCTGCTGCACTACTCCATGCCAATAGGTAATATTTACTTGATTTTTTTTTCATGTTAAGCTCTTCCTGTTTTGACTTCACTCTCTTTTAATGTTCTGTATCTTTTAAATTGTTATATTCTGGTTGCATTTGGATCAAATAATAAGTTAAAGATACCTATAATTTGTCGGCAGAGTTACCGTTATATTCCTTATTGGTGTTAGCCTGGTAGGTAGCATGTATCTCATGAAATTAGTCGAGTAACCATGGTCAGTAAGATTTTAGTAAGTACAACAACATGTATGGTACTTGTGCTTAAATGTAACAGGATGCCCATAAATTTTGTGTGAATAAATTGTATCAGATTAAGAAAGTTGTGTTCCTTTTAGATACAAAGTGAATCTCATTTATATGAGGTGCAACTTCTTGTAGAAGTTTGATGAATCGTATGCGGTAGGATCTTATTGTTTGGTAAAATGCAACTTCTATGGAAGTCTTGGATATTATTCTGAGTTATCACTAGACAACTTTGAAACATATTACTTTTCTCAACCTGCTAATCCCTTGTTGGTTCATTTCTTTGTTGCTAGTTTCTAACCTATGGCATCTCTGTTATTTGACTCAAAATTTAAGAATATCCAAGCAACATCTCTTTTTACCTATACAATCTTTCAGATTTTTGACTATCATGTGATTAGTTTTTTTGTCTGTGCTCTCCAAGCCTAACTAATCTGCAGAGGAAACTAGGTATTTCCTCCTTTGCATAAACATCATGCCCTGCTCTCTCATTCCCTCTGCTGTCTACGCCATCACAACTATTTCTTGGAGCACCCCGCACCTATTGTTCTGATCGTTCCTCTCTAGAACAATCAGCTTTTCTCAATTCTTAGATTAGCTGCAGGGTTGACCTACATTATGTTTGGTGTGTGCTCAAGCACCCATTGTCTGTTATTCTTTCTCAATGCGGAAATTTCAAGTGTGGATGGAAAATGTTCATATTACATTCTGCGCTTGTCATCATTTAAAAATAATGACACCAAATGCAGATGAAGGGACCTTTTCTGTTCAGTTCTACAAACTTGGAAATTTATTATGCCAAAGGGAATATTAGAGAGATGCTGATATCTGTGGGGGCAAACTCAACTACTCAACGGATGGTTTAGGTTTCTTTCCAAACTGCCTTTAGAGTTGTATGATTTATGTGCTCAGAGATGTAGAACGTTATTTCCCTCGGTCATTTGCATGATGAGGGGATAAGAGTTTTAAATTTCTGAAATTTCTGTACTTGCCTTGATGTTATTAAGAGGTTTGGATTGTATATAAGTTGCTCTACCCCCTTAACCCTTCTATCCATTGCTATTTCAGATGTTGTTCATTATTATATGTACTGAAAGGGGTTATATCTCAACTTTTAAATGTAGATGGATCATGGATAGCCGTGATGAACATACTCTGGAGCGCCT</genome_strand>
        <mrna_strand>TTTTTTCCGACGAGCTATTTATAGGGTTCAGTCATCTTCGCCGGCGGCGAGGCTACTTGTTGCCCGAGCTCACGCTTCGGACACCAAATCCCAGCAGGTCCAACCTCAAGTCGTTTCAAATTTACCGATGGAATCCAGATAACCCAGGGAAACCCGAGCTCCAAGAATACAAAATTGATCTGAAGGAATGTGGCCCTATGGTCTTAGACGCCCTAATCAAAATCAAGAATGAAGTTGACCCTTCACCAACCTTCATAAGATCTTGCAGAGAAGGGATCTGTGGGTCCTGTGCCATGAACATCGACGGCTGTAATGGACTCGCTTGTTTGACAAAGATCTCATCGGATTCTGTATCGACGATTACGCCACTGCCACATATGTTTGTGATTAAGGATTTGGTAGTGGATATGACTAATTTTTATAATCAGTATAAGTCTATTGAGCCTTGGCTGAAGAGAAAAACACCTGCGCCAACGCCTGGAAAGGAGATACCTCAGAGCAAGAGCGATAAGGCTAAGTTGGATGGGATGTACGAGTGTATTCTCTGTGCTTGTTGTAGTACATCATGCCCTAGCTACTGGTGGAATCCTGAGTCTTATCTTGGTCCTGCTGCACTACTCC-TGCCAATAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATCATGGATAGCCGTGGTGAACCTACTCTGGAACGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E336719" ref_strand="+" ref_description="SGN-E336719 [cTOE-5-K6]">
      <seq>tttaatccgacgagctatttatagggttcagtcatcttcgccggcggcgaggctacttgttgcccgagctcacgcttcggacaccaaatcccagcaggtccaacctcaagtcgtttcaaatttaccgatggaatccagataacccagggaaacccgagctccaagaatacaaaattgatctgaaggaatgtggccctatggtcttagacgccctaatcaaaatcaagaatgaagttgacccttcaccaaccttcagaagatcttgcagagaagggatctgtgggtcctgtgccatgaacatcgacggctgtaatggactcgcttggttgacaaagatctcatcggattctgtatcgacgattacgccactgccacatatgtttgtgattaaggatttggtagtggatatgactaatttttataatcaggataagtctattgagccttggctgaagagaaaaacaccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="27243" stop="28308"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27543" g_stop="28010" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E336719" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27543" e_stop="28010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATCCGACGAGCTATTTATAGGGTTCAGTCATCTTCGCCGGCGGCGAGGCTACTTGTTGCCCGAGCTCACGCTTCGGACACCAAATCCCAGCAGGTCCAACCTCAAGTCGTTTCAAATTTACCGATGGAATCCAGATAACCCAGGGAAACCCGAGCTCCAAGAATACAAAATTGATCTGAAGGAATGTGGCCCTATGGTCTTAGACGCCCTAATCAAAATCAAGAATGAAGTTGACCCTTCACCAACCTTCAGAAGATCTTGCAGAGAAGGGATCTGTGGGTCCTGTGCCATGAACATCGACGGCTGTAATGGACTCGCTTGTTTGACAAAGATCTCATCGGATTCTGTATCGACGATTACGCCACTGCCACATATGTTTGTGATTAAGGATTTGGTAGTGGATATGACTAATTTTTATAATCAGTATAAGTCTATTGAGCCTTGGCTGAAGAGAAAAACACCTG</genome_strand>
        <mrna_strand>TTTAATCCGACGAGCTATTTATAGGGTTCAGTCATCTTCGCCGGCGGCGAGGCTACTTGTTGCCCGAGCTCACGCTTCGGACACCAAATCCCAGCAGGTCCAACCTCAAGTCGTTTCAAATTTACCGATGGAATCCAGATAACCCAGGGAAACCCGAGCTCCAAGAATACAAAATTGATCTGAAGGAATGTGGCCCTATGGTCTTAGACGCCCTAATCAAAATCAAGAATGAAGTTGACCCTTCACCAACCTTCAGAAGATCTTGCAGAGAAGGGATCTGTGGGTCCTGTGCCATGAACATCGACGGCTGTAATGGACTCGCTTGGTTGACAAAGATCTCATCGGATTCTGTATCGACGATTACGCCACTGCCACATATGTTTGTGATTAAGGATTTGGTAGTGGATATGACTAATTTTTATAATCAGGATAAGTCTATTGAGCCTTGGCTGAAGAGAAAAACACCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E205909" ref_strand="+" ref_description="SGN-E205909 [cLEC-20-L4]">
      <seq>ttaatccgacgagctatttatagggttcagtcatcttcggcggcngcgaggctacttgttgcccgagctgacgcttccgacaccaaatcccagcaggtccaacctcaagtcgtttcaaatttaccgatggaatccagataacccagggaaacccgagctccaagaatacaaaattgatctgaaggaatgtggccctatggtcttagacgccctaatcaaaatcaagaatgaagttgacccttcaccaaccttcagaagatcttgcagagaagggatctgtgggtcctgtgccatgaacatcgacggctgtaatggactcgcttgtttgacaaagatctcatcggattctgtatcgacgattacgccactgccacatatgtttgtgattaaggatttggtagtggatatgactaatttttataatcagtataagtctattgagccttggctgaagagaaaaacacctgcgccaacgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="27244" stop="28321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27544" g_stop="28021" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E205909" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27544" e_stop="28021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATCCGACGAGCTATTTATAGGGTTCAGTCATCTTCGCCGGCGGCGAGGCTACTTGTTGCCCGAGCTCACGCTTCGGACACCAAATCCCAGCAGGTCCAACCTCAAGTCGTTTCAAATTTACCGATGGAATCCAGATAACCCAGGGAAACCCGAGCTCCAAGAATACAAAATTGATCTGAAGGAATGTGGCCCTATGGTCTTAGACGCCCTAATCAAAATCAAGAATGAAGTTGACCCTTCACCAACCTTCAGAAGATCTTGCAGAGAAGGGATCTGTGGGTCCTGTGCCATGAACATCGACGGCTGTAATGGACTCGCTTGTTTGACAAAGATCTCATCGGATTCTGTATCGACGATTACGCCACTGCCACATATGTTTGTGATTAAGGATTTGGTAGTGGATATGACTAATTTTTATAATCAGTATAAGTCTATTGAGCCTTGGCTGAAGAGAAAAACACCTGCGCCAACGCCT</genome_strand>
        <mrna_strand>TTAATCCGACGAGCTATTTATAGGGTTCAGTCATCTTCGGCGGCNGCGAGGCTACTTGTTGCCCGAGCTGACGCTTCCGACACCAAATCCCAGCAGGTCCAACCTCAAGTCGTTTCAAATTTACCGATGGAATCCAGATAACCCAGGGAAACCCGAGCTCCAAGAATACAAAATTGATCTGAAGGAATGTGGCCCTATGGTCTTAGACGCCCTAATCAAAATCAAGAATGAAGTTGACCCTTCACCAACCTTCAGAAGATCTTGCAGAGAAGGGATCTGTGGGTCCTGTGCCATGAACATCGACGGCTGTAATGGACTCGCTTGTTTGACAAAGATCTCATCGGATTCTGTATCGACGATTACGCCACTGCCACATATGTTTGTGATTAAGGATTTGGTAGTGGATATGACTAATTTTTATAATCAGTATAAGTCTATTGAGCCTTGGCTGAAGAGAAAAACACCTGCGCCAACGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240649" ref_strand="+" ref_description="SGN-E240649 [cLED-21-P12]">
      <seq>tcaaatcatttcaaatttaccgatggactccagacaacccagggaaacctgagctcaaagaatacaaaatcgatctgaaggaatgcggacctatggttttagatgcgctaatcaaaatcaagaatgaaattgaccctacacttaccttcaggagatcctgtagagaagggatctgtggttcatgtgctatgaacatcgacggatgtaatggactcgcttgtttgaccaagatctcgtcggattctgaatcgacgattacgccgttgccacatatgtttgtcattaaggatctggtggtggatatgactaatttctataatcagtacaagtctattgagccttggcttaagaggaagacacctgcaccaacgcctgtgaaggagataccacagagcaagagcgatagggctaagttggatgggatgtacgaatgtattctatgtgcttgctgtagcacatcatgtcctagctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="27348" stop="28421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27648" g_stop="28121" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="474" r_length="474" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E240649" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27648" e_stop="28121"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGTCGTTTCAAATTTACCGATGGAATCCAGATAACCCAGGGAAACCCGAGCTCCAAGAATACAAAATTGATCTGAAGGAATGTGGCCCTATGGTCTTAGACGCCCTAATCAAAATCAAGAATGAAGTTGACCCTTCACCAACCTTCAGAAGATCTTGCAGAGAAGGGATCTGTGGGTCCTGTGCCATGAACATCGACGGCTGTAATGGACTCGCTTGTTTGACAAAGATCTCATCGGATTCTGTATCGACGATTACGCCACTGCCACATATGTTTGTGATTAAGGATTTGGTAGTGGATATGACTAATTTTTATAATCAGTATAAGTCTATTGAGCCTTGGCTGAAGAGAAAAACACCTGCGCCAACGCCTGGAAAGGAGATACCTCAGAGCAAGAGCGATAAGGCTAAGTTGGATGGGATGTACGAGTGTATTCTCTGTGCTTGTTGTAGTACATCATGCCCTAGCTACT</genome_strand>
        <mrna_strand>TCAAATCATTTCAAATTTACCGATGGACTCCAGACAACCCAGGGAAACCTGAGCTCAAAGAATACAAAATCGATCTGAAGGAATGCGGACCTATGGTTTTAGATGCGCTAATCAAAATCAAGAATGAAATTGACCCTACACTTACCTTCAGGAGATCCTGTAGAGAAGGGATCTGTGGTTCATGTGCTATGAACATCGACGGATGTAATGGACTCGCTTGTTTGACCAAGATCTCGTCGGATTCTGAATCGACGATTACGCCGTTGCCACATATGTTTGTCATTAAGGATCTGGTGGTGGATATGACTAATTTCTATAATCAGTACAAGTCTATTGAGCCTTGGCTTAAGAGGAAGACACCTGCACCAACGCCTGTGAAGGAGATACCACAGAGCAAGAGCGATAGGGCTAAGTTGGATGGGATGTACGAATGTATTCTATGTGCTTGCTGTAGCACATCATGTCCTAGCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E253795" ref_strand="+" ref_description="SGN-E253795 [cLEG-28-A12]">
      <seq>aaatttaccgatggactccagacaacccagggaaacctgagctcaaagaatacaaaatcgatctgaaggaatgcggacctatggttttagatgcgctaatcaaaatcaagaatgaaattgaccctacacttaccttcaggagatcctgtagagaagggatctgtggttcatgtgctatgaacatcgacggatgtaatggactcgcttgtttgaccaagatctcgtcggattctgaatcgacgattacgccgttgccacatatgtttgtcattaaggatctggtggtggatatgactaatttctataatcagtacaagtctattgagccttggcttaagaggaagacacctgcaccaacgcctgggaaggagataccacagagcaagagcgatagggctaagttggatgggatgtacgaatgtattctatgtgcttgctgtagcacatcatgtcctagctactggtggaatcctgagtcttatcttggtcccgctgcactcctccatgccaaccgatggatcatggatagccgtgatgaatatactcaggagcgcctggatgcagttaatgacgaattcaagctttatcgctgccatactattctgaattgttctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="27360" stop="29951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27660" g_stop="28173" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="514" r_length="514" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28174" i_stop="29546" i_length="1373">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29547" g_stop="29651" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="619" r_length="105" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E253795" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27660" e_stop="28173"/>
          <exon e_start="29547" e_stop="29651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTACCGATGGAATCCAGATAACCCAGGGAAACCCGAGCTCCAAGAATACAAAATTGATCTGAAGGAATGTGGCCCTATGGTCTTAGACGCCCTAATCAAAATCAAGAATGAAGTTGACCCTTCACCAACCTTCAGAAGATCTTGCAGAGAAGGGATCTGTGGGTCCTGTGCCATGAACATCGACGGCTGTAATGGACTCGCTTGTTTGACAAAGATCTCATCGGATTCTGTATCGACGATTACGCCACTGCCACATATGTTTGTGATTAAGGATTTGGTAGTGGATATGACTAATTTTTATAATCAGTATAAGTCTATTGAGCCTTGGCTGAAGAGAAAAACACCTGCGCCAACGCCTGGAAAGGAGATACCTCAGAGCAAGAGCGATAAGGCTAAGTTGGATGGGATGTACGAGTGTATTCTCTGTGCTTGTTGTAGTACATCATGCCCTAGCTACTGGTGGAATCCTGAGTCTTATCTTGGTCCTGCTGCACTACTCCATGCCAATAGGTAATATTTACTTGATTTTTTTTTCATGTTAAGCTCTTCCTGTTTTGACTTCACTCTCTTTTAATGTTCTGTATCTTTTAAATTGTTATATTCTGGTTGCATTTGGATCAAATAATAAGTTAAAGATACCTATAATTTGTCGGCAGAGTTACCGTTATATTCCTTATTGGTGTTAGCCTGGTAGGTAGCATGTATCTCATGAAATTAGTCGAGTAACCATGGTCAGTAAGATTTTAGTAAGTACAACAACATGTATGGTACTTGTGCTTAAATGTAACAGGATGCCCATAAATTTTGTGTGAATAAATTGTATCAGATTAAGAAAGTTGTGTTCCTTTTAGATACAAAGTGAATCTCATTTATATGAGGTGCAACTTCTTGTAGAAGTTTGATGAATCGTATGCGGTAGGATCTTATTGTTTGGTAAAATGCAACTTCTATGGAAGTCTTGGATATTATTCTGAGTTATCACTAGACAACTTTGAAACATATTACTTTTCTCAACCTGCTAATCCCTTGTTGGTTCATTTCTTTGTTGCTAGTTTCTAACCTATGGCATCTCTGTTATTTGACTCAAAATTTAAGAATATCCAAGCAACATCTCTTTTTACCTATACAATCTTTCAGATTTTTGACTATCATGTGATTAGTTTTTTTGTCTGTGCTCTCCAAGCCTAACTAATCTGCAGAGGAAACTAGGTATTTCCTCCTTTGCATAAACATCATGCCCTGCTCTCTCATTCCCTCTGCTGTCTACGCCATCACAACTATTTCTTGGAGCACCCCGCACCTATTGTTCTGATCGTTCCTCTCTAGAACAATCAGCTTTTCTCAATTCTTAGATTAGCTGCAGGGTTGACCTACATTATGTTTGGTGTGTGCTCAAGCACCCATTGTCTGTTATTCTTTCTCAATGCGGAAATTTCAAGTGTGGATGGAAAATGTTCATATTACATTCTGCGCTTGTCATCATTTAAAAATAATGACACCAAATGCAGATGAAGGGACCTTTTCTGTTCAGTTCTACAAACTTGGAAATTTATTATGCCAAAGGGAATATTAGAGAGATGCTGATATCTGTGGGGGCAAACTCAACTACTCAACGGATGGTTTAGGTTTCTTTCCAAACTGCCTTTAGAGTTGTATGATTTATGTGCTCAGAGATGTAGAACGTTATTTCCCTCGGTCATTTGCATGATGAGGGGATAAGAGTTTTAAATTTCTGAAATTTCTGTACTTGCCTTGATGTTATTAAGAGGTTTGGATTGTATATAAGTTGCTCTACCCCCTTAACCCTTCTATCCATTGCTATTTCAGATGTTGTTCATTATTATATGTACTGAAAGGGGTTATATCTCAACTTTTAAATGTAGATGGATCATGGATAGCCGTGATGAACATACTCTGGAGCGCCTGGACGCAGTTAATGATGAATTCAAGCTTTATCGCTGCCACACTATTTTGAACTGTTCTCGTGC</genome_strand>
        <mrna_strand>AAATTTACCGATGGACTCCAGACAACCCAGGGAAACCTGAGCTCAAAGAATACAAAATCGATCTGAAGGAATGCGGACCTATGGTTTTAGATGCGCTAATCAAAATCAAGAATGAAATTGACCCTACACTTACCTTCAGGAGATCCTGTAGAGAAGGGATCTGTGGTTCATGTGCTATGAACATCGACGGATGTAATGGACTCGCTTGTTTGACCAAGATCTCGTCGGATTCTGAATCGACGATTACGCCGTTGCCACATATGTTTGTCATTAAGGATCTGGTGGTGGATATGACTAATTTCTATAATCAGTACAAGTCTATTGAGCCTTGGCTTAAGAGGAAGACACCTGCACCAACGCCTGGGAAGGAGATACCACAGAGCAAGAGCGATAGGGCTAAGTTGGATGGGATGTACGAATGTATTCTATGTGCTTGCTGTAGCACATCATGTCCTAGCTACTGGTGGAATCCTGAGTCTTATCTTGGTCCCGCTGCACTCCTCCATGCCAACCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATCATGGATAGCCGTGATGAATATACTCAGGAGCGCCTGGATGCAGTTAATGACGAATTCAAGCTTTATCGCTGCCATACTATTCTGAATTGTTCTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E277000" ref_strand="+" ref_description="SGN-E277000 [cLEN-22-F18]">
      <seq>tcaaagaatacaaaatcgatctgaaggaatgcggacctatggttttagatgcgctaatcaaaatcaagaatgaaattgaccctacacttaccttcaggagatcctgtagagaagggatctgtggttcatgtgctatgaacatcgacggatgtaatggactcgcttgtttgaccaagatctcgtcggattctgaatcgacgattacgccgttgccacatatgtttgtcattaaggatctggtggtggatatgactaatttctataatcagtacaagtctattgagccttggcttaagaggaagacacctgcaccaacgcctgggaaggagataccacagagcaagagcgatagggctaagttggatgggatgtacgaatgtattctatgtgcttgctgtagcacatcatgtcctagctactggtggaatcctgagtcttatcttggtcccgctgcactcctccatgccaaccgatggatcatggatagccgtgatgaatatactcaggagcgcctggatgcagttaatgacgaattcaagctttatcgctgccatactattctgaattgttctcgtgcttgcccaaagggattaaatcccgggaagcatattcagaacatcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="27402" stop="29980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27702" g_stop="28173" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28174" i_stop="29546" i_length="1373">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29547" g_stop="29678" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="604" r_length="132" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E277000" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27702" e_stop="28173"/>
          <exon e_start="29547" e_stop="29678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAGAATACAAAATTGATCTGAAGGAATGTGGCCCTATGGTCTTAGACGCCCTAATCAAAATCAAGAATGAAGTTGACCCTTCACCAACCTTCAGAAGATCTTGCAGAGAAGGGATCTGTGGGTCCTGTGCCATGAACATCGACGGCTGTAATGGACTCGCTTGTTTGACAAAGATCTCATCGGATTCTGTATCGACGATTACGCCACTGCCACATATGTTTGTGATTAAGGATTTGGTAGTGGATATGACTAATTTTTATAATCAGTATAAGTCTATTGAGCCTTGGCTGAAGAGAAAAACACCTGCGCCAACGCCTGGAAAGGAGATACCTCAGAGCAAGAGCGATAAGGCTAAGTTGGATGGGATGTACGAGTGTATTCTCTGTGCTTGTTGTAGTACATCATGCCCTAGCTACTGGTGGAATCCTGAGTCTTATCTTGGTCCTGCTGCACTACTCCATGCCAATAGGTAATATTTACTTGATTTTTTTTTCATGTTAAGCTCTTCCTGTTTTGACTTCACTCTCTTTTAATGTTCTGTATCTTTTAAATTGTTATATTCTGGTTGCATTTGGATCAAATAATAAGTTAAAGATACCTATAATTTGTCGGCAGAGTTACCGTTATATTCCTTATTGGTGTTAGCCTGGTAGGTAGCATGTATCTCATGAAATTAGTCGAGTAACCATGGTCAGTAAGATTTTAGTAAGTACAACAACATGTATGGTACTTGTGCTTAAATGTAACAGGATGCCCATAAATTTTGTGTGAATAAATTGTATCAGATTAAGAAAGTTGTGTTCCTTTTAGATACAAAGTGAATCTCATTTATATGAGGTGCAACTTCTTGTAGAAGTTTGATGAATCGTATGCGGTAGGATCTTATTGTTTGGTAAAATGCAACTTCTATGGAAGTCTTGGATATTATTCTGAGTTATCACTAGACAACTTTGAAACATATTACTTTTCTCAACCTGCTAATCCCTTGTTGGTTCATTTCTTTGTTGCTAGTTTCTAACCTATGGCATCTCTGTTATTTGACTCAAAATTTAAGAATATCCAAGCAACATCTCTTTTTACCTATACAATCTTTCAGATTTTTGACTATCATGTGATTAGTTTTTTTGTCTGTGCTCTCCAAGCCTAACTAATCTGCAGAGGAAACTAGGTATTTCCTCCTTTGCATAAACATCATGCCCTGCTCTCTCATTCCCTCTGCTGTCTACGCCATCACAACTATTTCTTGGAGCACCCCGCACCTATTGTTCTGATCGTTCCTCTCTAGAACAATCAGCTTTTCTCAATTCTTAGATTAGCTGCAGGGTTGACCTACATTATGTTTGGTGTGTGCTCAAGCACCCATTGTCTGTTATTCTTTCTCAATGCGGAAATTTCAAGTGTGGATGGAAAATGTTCATATTACATTCTGCGCTTGTCATCATTTAAAAATAATGACACCAAATGCAGATGAAGGGACCTTTTCTGTTCAGTTCTACAAACTTGGAAATTTATTATGCCAAAGGGAATATTAGAGAGATGCTGATATCTGTGGGGGCAAACTCAACTACTCAACGGATGGTTTAGGTTTCTTTCCAAACTGCCTTTAGAGTTGTATGATTTATGTGCTCAGAGATGTAGAACGTTATTTCCCTCGGTCATTTGCATGATGAGGGGATAAGAGTTTTAAATTTCTGAAATTTCTGTACTTGCCTTGATGTTATTAAGAGGTTTGGATTGTATATAAGTTGCTCTACCCCCTTAACCCTTCTATCCATTGCTATTTCAGATGTTGTTCATTATTATATGTACTGAAAGGGGTTATATCTCAACTTTTAAATGTAGATGGATCATGGATAGCCGTGATGAACATACTCTGGAGCGCCTGGACGCAGTTAATGATGAATTCAAGCTTTATCGCTGCCACACTATTTTGAACTGTTCTCGTGCTTGCCCAAAGGGATTTAATCCTGGCAA</genome_strand>
        <mrna_strand>TCAAAGAATACAAAATCGATCTGAAGGAATGCGGACCTATGGTTTTAGATGCGCTAATCAAAATCAAGAATGAAATTGACCCTACACTTACCTTCAGGAGATCCTGTAGAGAAGGGATCTGTGGTTCATGTGCTATGAACATCGACGGATGTAATGGACTCGCTTGTTTGACCAAGATCTCGTCGGATTCTGAATCGACGATTACGCCGTTGCCACATATGTTTGTCATTAAGGATCTGGTGGTGGATATGACTAATTTCTATAATCAGTACAAGTCTATTGAGCCTTGGCTTAAGAGGAAGACACCTGCACCAACGCCTGGGAAGGAGATACCACAGAGCAAGAGCGATAGGGCTAAGTTGGATGGGATGTACGAATGTATTCTATGTGCTTGCTGTAGCACATCATGTCCTAGCTACTGGTGGAATCCTGAGTCTTATCTTGGTCCCGCTGCACTCCTCCATGCCAACCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATCATGGATAGCCGTGATGAATATACTCAGGAGCGCCTGGATGCAGTTAATGACGAATTCAAGCTTTATCGCTGCCATACTATTCTGAATTGTTCTCGTGCTTGCCCAAAGGGATTAAATCCCGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E237584" ref_strand="+" ref_description="SGN-E237584 [cLED-19-L16]">
      <seq>caaaatcgatctgaaggaatgcggacctatggttttagatgcgctaatcaaaatcaagaatgaaattgaccctacacttaccttcaggagatcctgtagagaagggatctgtggttcatgtgctatgaacatcgacggatgtaatggactcgcttgtttgaccaagatctcgtcggattctgaatcgacgattacgccgttgccacatatgtttgtcattaaggatctggtggtggatatgactaatttctataatcagtacaagtctattgagccttggcttaagaggaagacacctgcaccaacgcctgggaaggagataccacagagcaagagcgatagggctaagttggatgggatgtacgaatgtattctatgtgcttgctgtagcacatcatgtcctagctactggtggaatcctgagtcttatcttggtcccgctgcactcctccatgccaaccgatggatcatggatagccgtgatgaatatactcaggagcgcctggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="27412" stop="29891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27712" g_stop="28173" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="462" r_length="462" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28174" i_stop="29546" i_length="1373">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29547" g_stop="29592" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="508" r_length="46" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E237584" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27712" e_stop="28173"/>
          <exon e_start="29547" e_stop="29592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATTGATCTGAAGGAATGTGGCCCTATGGTCTTAGACGCCCTAATCAAAATCAAGAATGAAGTTGACCCTTCACCAACCTTCAGAAGATCTTGCAGAGAAGGGATCTGTGGGTCCTGTGCCATGAACATCGACGGCTGTAATGGACTCGCTTGTTTGACAAAGATCTCATCGGATTCTGTATCGACGATTACGCCACTGCCACATATGTTTGTGATTAAGGATTTGGTAGTGGATATGACTAATTTTTATAATCAGTATAAGTCTATTGAGCCTTGGCTGAAGAGAAAAACACCTGCGCCAACGCCTGGAAAGGAGATACCTCAGAGCAAGAGCGATAAGGCTAAGTTGGATGGGATGTACGAGTGTATTCTCTGTGCTTGTTGTAGTACATCATGCCCTAGCTACTGGTGGAATCCTGAGTCTTATCTTGGTCCTGCTGCACTACTCCATGCCAATAGGTAATATTTACTTGATTTTTTTTTCATGTTAAGCTCTTCCTGTTTTGACTTCACTCTCTTTTAATGTTCTGTATCTTTTAAATTGTTATATTCTGGTTGCATTTGGATCAAATAATAAGTTAAAGATACCTATAATTTGTCGGCAGAGTTACCGTTATATTCCTTATTGGTGTTAGCCTGGTAGGTAGCATGTATCTCATGAAATTAGTCGAGTAACCATGGTCAGTAAGATTTTAGTAAGTACAACAACATGTATGGTACTTGTGCTTAAATGTAACAGGATGCCCATAAATTTTGTGTGAATAAATTGTATCAGATTAAGAAAGTTGTGTTCCTTTTAGATACAAAGTGAATCTCATTTATATGAGGTGCAACTTCTTGTAGAAGTTTGATGAATCGTATGCGGTAGGATCTTATTGTTTGGTAAAATGCAACTTCTATGGAAGTCTTGGATATTATTCTGAGTTATCACTAGACAACTTTGAAACATATTACTTTTCTCAACCTGCTAATCCCTTGTTGGTTCATTTCTTTGTTGCTAGTTTCTAACCTATGGCATCTCTGTTATTTGACTCAAAATTTAAGAATATCCAAGCAACATCTCTTTTTACCTATACAATCTTTCAGATTTTTGACTATCATGTGATTAGTTTTTTTGTCTGTGCTCTCCAAGCCTAACTAATCTGCAGAGGAAACTAGGTATTTCCTCCTTTGCATAAACATCATGCCCTGCTCTCTCATTCCCTCTGCTGTCTACGCCATCACAACTATTTCTTGGAGCACCCCGCACCTATTGTTCTGATCGTTCCTCTCTAGAACAATCAGCTTTTCTCAATTCTTAGATTAGCTGCAGGGTTGACCTACATTATGTTTGGTGTGTGCTCAAGCACCCATTGTCTGTTATTCTTTCTCAATGCGGAAATTTCAAGTGTGGATGGAAAATGTTCATATTACATTCTGCGCTTGTCATCATTTAAAAATAATGACACCAAATGCAGATGAAGGGACCTTTTCTGTTCAGTTCTACAAACTTGGAAATTTATTATGCCAAAGGGAATATTAGAGAGATGCTGATATCTGTGGGGGCAAACTCAACTACTCAACGGATGGTTTAGGTTTCTTTCCAAACTGCCTTTAGAGTTGTATGATTTATGTGCTCAGAGATGTAGAACGTTATTTCCCTCGGTCATTTGCATGATGAGGGGATAAGAGTTTTAAATTTCTGAAATTTCTGTACTTGCCTTGATGTTATTAAGAGGTTTGGATTGTATATAAGTTGCTCTACCCCCTTAACCCTTCTATCCATTGCTATTTCAGATGTTGTTCATTATTATATGTACTGAAAGGGGTTATATCTCAACTTTTAAATGTAGATGGATCATGGATAGCCGTGATGAACATACTCTGGAGCGCCTGGAC</genome_strand>
        <mrna_strand>CAAAATCGATCTGAAGGAATGCGGACCTATGGTTTTAGATGCGCTAATCAAAATCAAGAATGAAATTGACCCTACACTTACCTTCAGGAGATCCTGTAGAGAAGGGATCTGTGGTTCATGTGCTATGAACATCGACGGATGTAATGGACTCGCTTGTTTGACCAAGATCTCGTCGGATTCTGAATCGACGATTACGCCGTTGCCACATATGTTTGTCATTAAGGATCTGGTGGTGGATATGACTAATTTCTATAATCAGTACAAGTCTATTGAGCCTTGGCTTAAGAGGAAGACACCTGCACCAACGCCTGGGAAGGAGATACCACAGAGCAAGAGCGATAGGGCTAAGTTGGATGGGATGTACGAATGTATTCTATGTGCTTGCTGTAGCACATCATGTCCTAGCTACTGGTGGAATCCTGAGTCTTATCTTGGTCCCGCTGCACTCCTCCATGCCAACCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATCATGGATAGCCGTGATGAATATACTCAGGAGCGCCTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E747600" ref_strand="+" ref_description="SGN-E747600 [GI|5669040]">
      <seq>gcacgagcgatagggctaagttggatgggatgtacgaatgtattctatgtgcttgctgtagcacatcatgtcctagctactggtggaatcctgagtcttatcttggtccgctgcactcctgccatgccaaccgatggatcatggatagccgtgatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="27741" stop="29871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28041" g_stop="28173" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.902"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28174" i_stop="29546" i_length="1373">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29547" g_stop="29571" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="158" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E747600" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>158</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28041" e_stop="28173"/>
          <exon e_start="29547" e_stop="29571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGAGCGATAAGGCTAAGTTGGATGGGATGTACGAGTGTATTCTCTGTGCTTGTTGTAGTACATCATGCCCTAGCTACTGGTGGAATCCTGAGTCTTATCTTGGTCCTGCTGCACTACT-CCATGCCAATAGGTAATATTTACTTGATTTTTTTTTCATGTTAAGCTCTTCCTGTTTTGACTTCACTCTCTTTTAATGTTCTGTATCTTTTAAATTGTTATATTCTGGTTGCATTTGGATCAAATAATAAGTTAAAGATACCTATAATTTGTCGGCAGAGTTACCGTTATATTCCTTATTGGTGTTAGCCTGGTAGGTAGCATGTATCTCATGAAATTAGTCGAGTAACCATGGTCAGTAAGATTTTAGTAAGTACAACAACATGTATGGTACTTGTGCTTAAATGTAACAGGATGCCCATAAATTTTGTGTGAATAAATTGTATCAGATTAAGAAAGTTGTGTTCCTTTTAGATACAAAGTGAATCTCATTTATATGAGGTGCAACTTCTTGTAGAAGTTTGATGAATCGTATGCGGTAGGATCTTATTGTTTGGTAAAATGCAACTTCTATGGAAGTCTTGGATATTATTCTGAGTTATCACTAGACAACTTTGAAACATATTACTTTTCTCAACCTGCTAATCCCTTGTTGGTTCATTTCTTTGTTGCTAGTTTCTAACCTATGGCATCTCTGTTATTTGACTCAAAATTTAAGAATATCCAAGCAACATCTCTTTTTACCTATACAATCTTTCAGATTTTTGACTATCATGTGATTAGTTTTTTTGTCTGTGCTCTCCAAGCCTAACTAATCTGCAGAGGAAACTAGGTATTTCCTCCTTTGCATAAACATCATGCCCTGCTCTCTCATTCCCTCTGCTGTCTACGCCATCACAACTATTTCTTGGAGCACCCCGCACCTATTGTTCTGATCGTTCCTCTCTAGAACAATCAGCTTTTCTCAATTCTTAGATTAGCTGCAGGGTTGACCTACATTATGTTTGGTGTGTGCTCAAGCACCCATTGTCTGTTATTCTTTCTCAATGCGGAAATTTCAAGTGTGGATGGAAAATGTTCATATTACATTCTGCGCTTGTCATCATTTAAAAATAATGACACCAAATGCAGATGAAGGGACCTTTTCTGTTCAGTTCTACAAACTTGGAAATTTATTATGCCAAAGGGAATATTAGAGAGATGCTGATATCTGTGGGGGCAAACTCAACTACTCAACGGATGGTTTAGGTTTCTTTCCAAACTGCCTTTAGAGTTGTATGATTTATGTGCTCAGAGATGTAGAACGTTATTTCCCTCGGTCATTTGCATGATGAGGGGATAAGAGTTTTAAATTTCTGAAATTTCTGTACTTGCCTTGATGTTATTAAGAGGTTTGGATTGTATATAAGTTGCTCTACCCCCTTAACCCTTCTATCCATTGCTATTTCAGATGTTGTTCATTATTATATGTACTGAAAGGGGTTATATCTCAACTTTTAAATGTAGATGGATCATGGATAGCCGTGATGAA</genome_strand>
        <mrna_strand>GCACGAGCGATAGGGCTAAGTTGGATGGGATGTACGAATGTATTCTATGTGCTTGCTGTAGCACATCATGTCCTAGCTACTGGTGGAATCCTGAGTCTTATCTTGGTCC-GCTGCACTCCTGCCATGCCAACCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATCATGGATAGCCGTGATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E395610" ref_strand="+" ref_description="SGN-E395610 [TUS-16-H20](-)">
      <seq>gccctagctactggtggaatcctgagtcttatcttggtcctgctgcactactccatgccaatagatggatcatggatagccgtgatgaacatactctggagcgcctggacgcagttaatgatgaattcaagctttatcgctgccacactattttgaactgttctcgtgcttgcccaaagggatttaatcctggcaagctcagaacatcaagcgcctggagatggcgccttgagcctgcactctgcagtgtagtgtaccagtctattctgctaacattgattttggaggaccagtaggaggtagttctcaaaataatttatgcacagatcgtaatttgctttctgagatttttttttggtgctagggtgttgcccttccccgagccctgtgtgaatatgggattcttttgtgcaccgtgctgccttattcgagatgaaaggtgcatctcacctgaaatattgtactaacaattagtatgatagctgaagtgaagcaaacatgtaatagcagagagtatatacaaatttatgaactgatttatcatagaaaataatgatttctataaatattcgtttgaaaatatacctcataaaaacttcatcaattatataaaacaaaatttatattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="27810" stop="30398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28110" g_stop="28173" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28174" i_stop="29546" i_length="1373">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29547" g_stop="30120" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="638" r_length="574" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E395610" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28110" e_stop="28173"/>
          <exon e_start="29547" e_stop="30120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCTAGCTACTGGTGGAATCCTGAGTCTTATCTTGGTCCTGCTGCACTACTCCATGCCAATAGGTAATATTTACTTGATTTTTTTTTCATGTTAAGCTCTTCCTGTTTTGACTTCACTCTCTTTTAATGTTCTGTATCTTTTAAATTGTTATATTCTGGTTGCATTTGGATCAAATAATAAGTTAAAGATACCTATAATTTGTCGGCAGAGTTACCGTTATATTCCTTATTGGTGTTAGCCTGGTAGGTAGCATGTATCTCATGAAATTAGTCGAGTAACCATGGTCAGTAAGATTTTAGTAAGTACAACAACATGTATGGTACTTGTGCTTAAATGTAACAGGATGCCCATAAATTTTGTGTGAATAAATTGTATCAGATTAAGAAAGTTGTGTTCCTTTTAGATACAAAGTGAATCTCATTTATATGAGGTGCAACTTCTTGTAGAAGTTTGATGAATCGTATGCGGTAGGATCTTATTGTTTGGTAAAATGCAACTTCTATGGAAGTCTTGGATATTATTCTGAGTTATCACTAGACAACTTTGAAACATATTACTTTTCTCAACCTGCTAATCCCTTGTTGGTTCATTTCTTTGTTGCTAGTTTCTAACCTATGGCATCTCTGTTATTTGACTCAAAATTTAAGAATATCCAAGCAACATCTCTTTTTACCTATACAATCTTTCAGATTTTTGACTATCATGTGATTAGTTTTTTTGTCTGTGCTCTCCAAGCCTAACTAATCTGCAGAGGAAACTAGGTATTTCCTCCTTTGCATAAACATCATGCCCTGCTCTCTCATTCCCTCTGCTGTCTACGCCATCACAACTATTTCTTGGAGCACCCCGCACCTATTGTTCTGATCGTTCCTCTCTAGAACAATCAGCTTTTCTCAATTCTTAGATTAGCTGCAGGGTTGACCTACATTATGTTTGGTGTGTGCTCAAGCACCCATTGTCTGTTATTCTTTCTCAATGCGGAAATTTCAAGTGTGGATGGAAAATGTTCATATTACATTCTGCGCTTGTCATCATTTAAAAATAATGACACCAAATGCAGATGAAGGGACCTTTTCTGTTCAGTTCTACAAACTTGGAAATTTATTATGCCAAAGGGAATATTAGAGAGATGCTGATATCTGTGGGGGCAAACTCAACTACTCAACGGATGGTTTAGGTTTCTTTCCAAACTGCCTTTAGAGTTGTATGATTTATGTGCTCAGAGATGTAGAACGTTATTTCCCTCGGTCATTTGCATGATGAGGGGATAAGAGTTTTAAATTTCTGAAATTTCTGTACTTGCCTTGATGTTATTAAGAGGTTTGGATTGTATATAAGTTGCTCTACCCCCTTAACCCTTCTATCCATTGCTATTTCAGATGTTGTTCATTATTATATGTACTGAAAGGGGTTATATCTCAACTTTTAAATGTAGATGGATCATGGATAGCCGTGATGAACATACTCTGGAGCGCCTGGACGCAGTTAATGATGAATTCAAGCTTTATCGCTGCCACACTATTTTGAACTGTTCTCGTGCTTGCCCAAAGGGATTTAATCCTGGCAAGCTCAGAACATCAAGCGCCTGGAGATGGCGCCTTGAGCCTGCACTCTGCAGTGTAGTGTACCAGTCTATTCTGCTAACATTGATTTTGGAGGACCAGTAGGAGGTAGTTCTCAAAATAATTTATGCACAGATCGTAATTTGCTTTCTGAGATTTTTTTTTGGTGCTAGGGTGTTGCCCTTCCCCGAGCCCTGTGTGAATATGGGATTCTTTTGTGCACCGTGCTGCCTTATTCGAGATGAAAGGTGCATCTCACCTGAAATATTGTACTAACAATTAGTATGATAGCTGAAGTGAAGCAAACATGTAATAGCAGAGAGTATATACAAATTTATGAACTGATTTATCATAGAAAATAATGATTTCTATAAATATTCGTTTGAAATTATACCTCATAAAAACTTCATCAATTATATAAAACATTTCTTATATTATCGATGGTAG</genome_strand>
        <mrna_strand>GCCCTAGCTACTGGTGGAATCCTGAGTCTTATCTTGGTCCTGCTGCACTACTCCATGCCAATAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATCATGGATAGCCGTGATGAACATACTCTGGAGCGCCTGGACGCAGTTAATGATGAATTCAAGCTTTATCGCTGCCACACTATTTTGAACTGTTCTCGTGCTTGCCCAAAGGGATTTAATCCTGGCAAGCTCAGAACATCAAGCGCCTGGAGATGGCGCCTTGAGCCTGCACTCTGCAGTGTAGTGTACCAGTCTATTCTGCTAACATTGATTTTGGAGGACCAGTAGGAGGTAGTTCTCAAAATAATTTATGCACAGATCGTAATTTGCTTTCTGAGATTTTTTTTTGGTGCTAGGGTGTTGCCCTTCCCCGAGCCCTGTGTGAATATGGGATTCTTTTGTGCACCGTGCTGCCTTATTCGAGATGAAAGGTGCATCTCACCTGAAATATTGTACTAACAATTAGTATGATAGCTGAAGTGAAGCAAACATGTAATAGCAGAGAGTATATACAAATTTATGAACTGATTTATCATAGAAAATAATGATTTCTATAAATATTCGTTTGAAAATATACCTCATAAAAACTTCATCAATTATATAAAACAAAATTTATATTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E371081" ref_strand="+" ref_description="SGN-E371081 [TUS-29-L17](-)">
      <seq>ctaaaattcgaaatcaatttcattctcatcctagtccaacacctcaggttcgattttctaaagttagttttcaatcaaatgtcaacaattccacacgaaaatcagcattgtggagtctatttcgcgttggcctagttacaccaccagaaattgcattacaagatctgaaaaacagaggaaacagggatatttcaggaagtcgaaatagcacgagcagtagtagcagcgggagcttcggcaataatgataataagatgagaattaagaaaacgaaacagaggttttctctaggcagctgtaaatgttcagcaaatgtggtagaaacagttccaatcgtgaacagtagaagtacaattaagaaaataagaaaagccacaggggaccatgaacatgaagataagaaggattcatcagagaatatcaaatcgacaaaaaagcaagcaatgtcacgtcatcgaacgtttgagtggttaaagcaactttcactagaaggtccatcagatgaaacataaagatttcaaagtatcacgcatgcttagcttcttttttttcttctttttttcatgtaatgtaatgtaactttttttttttttgagtagtggaatcatgaagttgattaattgaagtaattgaggacgcaattataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="32063" stop="30816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31763" g_stop="31109" g_length="655"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="654" r_length="654" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E371081" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31763" e_stop="31109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAATTCGAAATCAATTTCATTCTCATCCTAGTCCAACACCTCAGGTTCGATTTTCTAAAGTTAGTTTTCAATCAAATGTCAACAATTCCACACGAAAATCAGCATTGTGGAGTCTATTTCGCGTTGGCCTAGTTACACCACCAGAAATTGCATTACAAGATCTGAAAAACAGAGGAAACAGGGATATTTCAGGAAGTCGAAATAGCACGAGCAGTAGTAGCAGCGGGAGCTTCGGCAATAATGATAATAAGATGAGAATTAAGAAAACGAAACAGAGGTTTTCTCTAGGCAGCTGTAAATGTTCAGCAAATGTGGTAGAAACAGTTCCAATCGTGAACAGTAGAAGTACAATTAAGAAAATAAGAAAAGCCACAGGGGACCATGAACATGAAGATAAGAAGGATTCATCAGAGAATATCAAATCGACAAAAAAGCAAGCAATGTCACGTCATCGAACGTTTGAGTGGTTAAAGCAACTTTCACTAGAAGGTCCATCAGATGAAACATAAAGATTTCAAAGTATCACGCATGCTTAGCTTCTTTTTTTTCTTCTTTTTTTCATGTAATGTAATGTAACTTTTTTTTTTTTTTGAGTAGTGGAATCATGAAGTTGATTAATTGAAGTAATTGAGGACGCAATTATAATGGTAGC</genome_strand>
        <mrna_strand>CTAAAATTCGAAATCAATTTCATTCTCATCCTAGTCCAACACCTCAGGTTCGATTTTCTAAAGTTAGTTTTCAATCAAATGTCAACAATTCCACACGAAAATCAGCATTGTGGAGTCTATTTCGCGTTGGCCTAGTTACACCACCAGAAATTGCATTACAAGATCTGAAAAACAGAGGAAACAGGGATATTTCAGGAAGTCGAAATAGCACGAGCAGTAGTAGCAGCGGGAGCTTCGGCAATAATGATAATAAGATGAGAATTAAGAAAACGAAACAGAGGTTTTCTCTAGGCAGCTGTAAATGTTCAGCAAATGTGGTAGAAACAGTTCCAATCGTGAACAGTAGAAGTACAATTAAGAAAATAAGAAAAGCCACAGGGGACCATGAACATGAAGATAAGAAGGATTCATCAGAGAATATCAAATCGACAAAAAAGCAAGCAATGTCACGTCATCGAACGTTTGAGTGGTTAAAGCAACTTTCACTAGAAGGTCCATCAGATGAAACATAAAGATTTCAAAGTATCACGCATGCTTAGCTTCTTTTTTTTCTTCTTTTTTTCATGTAATGTAATGTAAC-TTTTTTTTTTTTTGAGTAGTGGAATCATGAAGTTGATTAATTGAAGTAATTGAGGACGCAATTATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E280332" ref_strand="+" ref_description="SGN-E280332 [cLER-1-O1](-)">
      <seq>agcattgtggagtctatttcgcgttggcctagttacaccaccagaaattgcattacaagatctgaaaaacagaggaaacagggatatttcaggaagtcgaaatagcacgagcagtagtagcagcgggagcttcggcaataatgataataagatgagaattaagaaaacgaaacagaggttttctctaggcagctgtaaatgttcagcaaatgtggtagaaacagttccaatcgtgaacagtagaagtacaattaagaaaataagaaaagccacaggggaccatgaacatgaagataagaaggattcatcagagaatatcaaatcgacaaaaaagcaagcaatgtcacgtcatcgaacgtttgagtggttaaagcaactttcactagaaggtccatcagatgaaacataaagatttcaaagtatcacgcatgcttagcttcttttttttcttctttttttcatgtaatgtaatgtaactttttttttttttgagtagtggaatcatgaagtaaattaattgaagtaattgaggacgcaattataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="31960" stop="30816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31660" g_stop="31109" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="551" r_length="551" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E280332" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31660" e_stop="31109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATTGTGGAGTCTATTTCGCGTTGGCCTAGTTACACCACCAGAAATTGCATTACAAGATCTGAAAAACAGAGGAAACAGGGATATTTCAGGAAGTCGAAATAGCACGAGCAGTAGTAGCAGCGGGAGCTTCGGCAATAATGATAATAAGATGAGAATTAAGAAAACGAAACAGAGGTTTTCTCTAGGCAGCTGTAAATGTTCAGCAAATGTGGTAGAAACAGTTCCAATCGTGAACAGTAGAAGTACAATTAAGAAAATAAGAAAAGCCACAGGGGACCATGAACATGAAGATAAGAAGGATTCATCAGAGAATATCAAATCGACAAAAAAGCAAGCAATGTCACGTCATCGAACGTTTGAGTGGTTAAAGCAACTTTCACTAGAAGGTCCATCAGATGAAACATAAAGATTTCAAAGTATCACGCATGCTTAGCTTCTTTTTTTTCTTCTTTTTTTCATGTAATGTAATGTAACTTTTTTTTTTTTTTGAGTAGTGGAATCATGAAGTTGATTAATTGAAGTAATTGAGGACGCAATTATAATGGTAGC</genome_strand>
        <mrna_strand>AGCATTGTGGAGTCTATTTCGCGTTGGCCTAGTTACACCACCAGAAATTGCATTACAAGATCTGAAAAACAGAGGAAACAGGGATATTTCAGGAAGTCGAAATAGCACGAGCAGTAGTAGCAGCGGGAGCTTCGGCAATAATGATAATAAGATGAGAATTAAGAAAACGAAACAGAGGTTTTCTCTAGGCAGCTGTAAATGTTCAGCAAATGTGGTAGAAACAGTTCCAATCGTGAACAGTAGAAGTACAATTAAGAAAATAAGAAAAGCCACAGGGGACCATGAACATGAAGATAAGAAGGATTCATCAGAGAATATCAAATCGACAAAAAAGCAAGCAATGTCACGTCATCGAACGTTTGAGTGGTTAAAGCAACTTTCACTAGAAGGTCCATCAGATGAAACATAAAGATTTCAAAGTATCACGCATGCTTAGCTTCTTTTTTTTCTTCTTTTTTTCATGTAATGTAATGTAAC-TTTTTTTTTTTTTGAGTAGTGGAATCATGAAGTAAATTAATTGAAGTAATTGAGGACGCAATTATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E402607" ref_strand="+" ref_description="SGN-E402607 [PPC-8-O9]">
      <seq>aaatgccggctttatttgcgccccaatagtattattgacttgcaaacaagaaacgaacaattttctattgtcgcctgcaagcttattcctttacatcccatttgtctccctctctatataactgttcctctttttaactatatttttctatctatatcgaccacaacaagaagaagaaaaaatgatgaaaattactagggaaagcgaagaaattgttctccttagagaacaagaagaggaattagaagaagacgaagaagcattatcactgtgtgatcttccgaacaatgaagagaacgaaacgaaggaagaagcttctagaagtactagtgaagaagccgccggccaattggaagattttgattttagctcttccggtggtaatttgttgaaagagtcagagatgtgtacggcagatgaaattttctataaaggccaaatattaccgttgcgtcattcaattagtttgccaagtgatcggcgcaattgtcatgacacaaattcaagcagtagaagtagcagtattcgaagccaacgttcatctagcagtggcagttcatctaatttcaacacaaaataccagcctaagattcgaaatcaatttcattcccatcctagtccaacacctcaagttcgattttctaaagttaattctcaatcaaatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="32655" stop="31381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32355" g_stop="31681" g_length="675"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="667" r_length="667" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E402607" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E402607" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32355" e_stop="31681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCCGGCTTTATTTGCGCCCCAATAGTATTCTTGACTTACAAACAAGGAACGAACAATTTTCTATTGTCGCCTGCAAGCTTATTCC--TACATCCCATTTGTCTCCCTCTTTATATAACTGTTCCTCTTTTTTAACTATATTATTCTATATCGACCTCGATCAACAAGAACAAGAGCAAGAAAAAATGATGAAAATTACTAGGGAAAGCGAAGAAATTGTTCTCCTCGAAGAACAATACGATGAATTAGAAGACGAATATGATGAAGAAGCATTATCACTGTGTGATCTTCCGAACAATGAAGAGGACGAAAAGAAGGAAGAAGTTTCTAGAAGTACTAGCGTAGAAG--G-CGGACAATTAGAAGATTTTGATTTTAGCTCTTCTGGTGGTAATTTGTTGAAAGAATCAGAGATGTGTACGGCAGATGAAATTTTCTACAAAGGCCAAATATTACCGTTGCGTCATTCAATTAGTTTGCCAAGTGATCGGCGCAATTGTCATGATACAAATTCAAGCAGTAGAAGTAGCAGTATTCGAAGCCAACGTTCATCTAGCAGTGGCAGTTCATCTAATTTCAACACGAAATATCAGCCTAAAATTCGAAATCAATTTCATTCTCATCCTAGTCCAACACCTCAGGTTCGATTTTCTAAAGTTAGTTTTCAATCAAATGTC</genome_strand>
        <mrna_strand>AAATGCCGGCTTTATTTGCGCCCCAATAGTATTATTGACTTGCAAACAAGAAACGAACAATTTTCTATTGTCGCCTGCAAGCTTATTCCTTTACATCCCATTTGTCTCCCTCTCTATATAACTGTTCCTC-TTTTTAACTATATT-TT-TCTATCTA--T--ATCGACCACAACAAGAAGAAGAAAAAATGATGAAAATTACTAGGGAAAGCGAAGAAATTGTTCTCCTTAGAGAACAAGAAGAGGAATTAG-A-A-G-A-A-GACGAAGAAGCATTATCACTGTGTGATCTTCCGAACAATGAAGAGAACGAAACGAAGGAAGAAGCTTCTAGAAGTACTAGTGAAGAAGCCGCCGGCCAATTGGAAGATTTTGATTTTAGCTCTTCCGGTGGTAATTTGTTGAAAGAGTCAGAGATGTGTACGGCAGATGAAATTTTCTATAAAGGCCAAATATTACCGTTGCGTCATTCAATTAGTTTGCCAAGTGATCGGCGCAATTGTCATGACACAAATTCAAGCAGTAGAAGTAGCAGTATTCGAAGCCAACGTTCATCTAGCAGTGGCAGTTCATCTAATTTCAACACAAAATACCAGCCTAAGATTCGAAATCAATTTCATTCCCATCCTAGTCCAACACCTCAAGTTCGATTTTCTAAAGTTAATTCTCAATCAAATGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E333395" ref_strand="+" ref_description="SGN-E333395 [cTOD-20-D5]">
      <seq>cttgacttacaaacaaggaacgaacaattttctattgtcgcctgcaagcttattcctacatcccatttgtctccctctttatataactgttcctcttttttaactatattattctatatcgacctcgatcaacaagaacaagagcaagaaaaaatgatgaaaattactagggaaagcgaagaaattgttctcctcgaagaacaatacgatgaattagaagacgaatatgatgaagaagcattatcactgtgtgatcttccgaacaatgaagaggacgaaaagaaggaagaagtttctagaagtactagcgtagaaggcggacaattagaagattttgattttagctcttctggtggtaatttgttgaaagaatcagagatgtgtacggcagatgaaattttctacaaaggccaaatattaccgttgcgtcattcaattagtttgccaagtgatcggcgcaattgtcatgatacaaattcaagcagtagaagtagcagtattcgaagccaacgttcatctagcagtggcagttcatctaatttcaacacgaaatatcagcctaaaattcgaaatcaatttcattctcatcctagtccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="32622" stop="31425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32322" g_stop="31725" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="598" r_length="598" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E333395" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333395" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32322" e_stop="31725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGACTTACAAACAAGGAACGAACAATTTTCTATTGTCGCCTGCAAGCTTATTCCTACATCCCATTTGTCTCCCTCTTTATATAACTGTTCCTCTTTTTTAACTATATTATTCTATATCGACCTCGATCAACAAGAACAAGAGCAAGAAAAAATGATGAAAATTACTAGGGAAAGCGAAGAAATTGTTCTCCTCGAAGAACAATACGATGAATTAGAAGACGAATATGATGAAGAAGCATTATCACTGTGTGATCTTCCGAACAATGAAGAGGACGAAAAGAAGGAAGAAGTTTCTAGAAGTACTAGCGTAGAAGGCGGACAATTAGAAGATTTTGATTTTAGCTCTTCTGGTGGTAATTTGTTGAAAGAATCAGAGATGTGTACGGCAGATGAAATTTTCTACAAAGGCCAAATATTACCGTTGCGTCATTCAATTAGTTTGCCAAGTGATCGGCGCAATTGTCATGATACAAATTCAAGCAGTAGAAGTAGCAGTATTCGAAGCCAACGTTCATCTAGCAGTGGCAGTTCATCTAATTTCAACACGAAATATCAGCCTAAAATTCGAAATCAATTTCATTCTCATCCTAGTCCAA</genome_strand>
        <mrna_strand>CTTGACTTACAAACAAGGAACGAACAATTTTCTATTGTCGCCTGCAAGCTTATTCCTACATCCCATTTGTCTCCCTCTTTATATAACTGTTCCTCTTTTTTAACTATATTATTCTATATCGACCTCGATCAACAAGAACAAGAGCAAGAAAAAATGATGAAAATTACTAGGGAAAGCGAAGAAATTGTTCTCCTCGAAGAACAATACGATGAATTAGAAGACGAATATGATGAAGAAGCATTATCACTGTGTGATCTTCCGAACAATGAAGAGGACGAAAAGAAGGAAGAAGTTTCTAGAAGTACTAGCGTAGAAGGCGGACAATTAGAAGATTTTGATTTTAGCTCTTCTGGTGGTAATTTGTTGAAAGAATCAGAGATGTGTACGGCAGATGAAATTTTCTACAAAGGCCAAATATTACCGTTGCGTCATTCAATTAGTTTGCCAAGTGATCGGCGCAATTGTCATGATACAAATTCAAGCAGTAGAAGTAGCAGTATTCGAAGCCAACGTTCATCTAGCAGTGGCAGTTCATCTAATTTCAACACGAAATATCAGCCTAAAATTCGAAATCAATTTCATTCTCATCCTAGTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E471145" ref_strand="+" ref_description="SGN-E471145 [cSTB-22-L13]">
      <seq>attttctattgtcgcctgcaagcttattcctttacatcccatttgtctccctctctatataactgttcctctttttaactatatttttctatctatatcgaccacaacaagaagaagaaaaaatgatgaaaattactagggaaagcgaagaaattgttctccttagagaacaagaagaggaattagaagaagacgaagaagcattatcactgtgtgatcttccgaacaatgaagagaacgaaacgaaggaagaagcttctagaagtactagtgaagaagccgccggccaattggaagattttgattttagctcttccggtggtaatttgttgaaagagtcagagatgtgtacggcagatgaaattttctataaaggccaaatattaccgttgcgtcattcaattagtttgccaagtgatcggcgcaattgtcatgacacaaattcaagcagtagaagtagcagtattcgaagccaacgttcatctagcagtggcagttcatctaatttcaacacaaaataccagcctaagattcgaaatcaatttcattcccatcctag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="32596" stop="31430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32296" g_stop="31730" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E471145" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E471145" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32296" e_stop="31730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTCTATTGTCGCCTGCAAGCTTATTCC--TACATCCCATTTGTCTCCCTCTTTATATAACTGTTCCTCTTTTTTAACTATATTATTCTATATCGACCTCGATCAACAAGAACAAGAGCAAGAAAAAATGATGAAAATTACTAGGGAAAGCGAAGAAATTGTTCTCCTCGAAGAACAATACGATGAATTAGAAGACGAATATGATGAAGAAGCATTATCACTGTGTGATCTTCCGAACAATGAAGAGGACGAAAAGAAGGAAGAAGTTTCTAGAAGTACTAGCGTAGAAG--G-CGGACAATTAGAAGATTTTGATTTTAGCTCTTCTGGTGGTAATTTGTTGAAAGAATCAGAGATGTGTACGGCAGATGAAATTTTCTACAAAGGCCAAATATTACCGTTGCGTCATTCAATTAGTTTGCCAAGTGATCGGCGCAATTGTCATGATACAAATTCAAGCAGTAGAAGTAGCAGTATTCGAAGCCAACGTTCATCTAGCAGTGGCAGTTCATCTAATTTCAACACGAAATATCAGCCTAAAATTCGAAATCAATTTCATTCTCATCCTAG</genome_strand>
        <mrna_strand>ATTTTCTATTGTCGCCTGCAAGCTTATTCCTTTACATCCCATTTGTCTCCCTCTCTATATAACTGTTCCTC-TTTTTAACTATATTTTTCTA--TCTATATCGA-CCACAACAA-GA-AG-AAGAAAAAATGATGAAAATTACTAGGGAAAGCGAAGAAATTGTTCTCCTTAGAGAACAAGAAGAGGAATTAG-A-A-G-A-A-GACGAAGAAGCATTATCACTGTGTGATCTTCCGAACAATGAAGAGAACGAAACGAAGGAAGAAGCTTCTAGAAGTACTAGTGAAGAAGCCGCCGGCCAATTGGAAGATTTTGATTTTAGCTCTTCCGGTGGTAATTTGTTGAAAGAGTCAGAGATGTGTACGGCAGATGAAATTTTCTATAAAGGCCAAATATTACCGTTGCGTCATTCAATTAGTTTGCCAAGTGATCGGCGCAATTGTCATGACACAAATTCAAGCAGTAGAAGTAGCAGTATTCGAAGCCAACGTTCATCTAGCAGTGGCAGTTCATCTAATTTCAACACAAAATACCAGCCTAAGATTCGAAATCAATTTCATTCCCATCCTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E371082" ref_strand="+" ref_description="SGN-E371082 [TUS-29-L17]">
      <seq>tttataatataatctatataaattaataccattcaaatgcatgcattgttaaattaaagtagtccccaccatcttcactcttcccaagtagtaacagagaagcccaactttatttttctccgtaataatcatttgaaaggcttaaaaaagctccacgctgctaaaaaaaaagccggctttatttgcgccccaatagtattcttgacttacaaacaaggaacgaacaattttctattgtcgcctgcaagcttattcctacatcccatttgtctccctctttatataactgttcctcttttttaactatattattctatatcgacctcgatcaacaagaacaagagcaagaaaaaatgatgaaaattactagggaaagcgaagaaattgttctcctcgaagaacaatacgatgaattagaagacgaatatgatgaagaagcattatcactgtgtgatcttccgaacaatgaagaggacgaaaagaaggaagaagtttctagaagtactagcgtagaaggcggacaattagaagattttgattttagctcttctggtggtaatttgttgaaagaatcagagatgtgtacggcagatgaaattttctacaaaggccaaatattaccgttgcgtcattcaattagtttgccaagtgatcggcgcaattgtcatgatacaaattcaagcagtagaagtagcagtattcgaagccaacgttcatctagcagtggcagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="32822" stop="31491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32522" g_stop="31791" g_length="732"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="732" r_length="732" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E371082" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32522" e_stop="31791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATAATATAATCTATATAAATTAATACCATTCAAATGCATGCATTGTTAAATTAAAGTAGTCCCCACCATCTTCACTCTTCCCAAGTAGTAACAGAGAAGCCCAACTTTATTTTTCTCCGTAATAATCATTTGAAAGGCTTAAAAAAGCTCCACGCTGCTAAAAAAAAAGCCGGCTTTATTTGCGCCCCAATAGTATTCTTGACTTACAAACAAGGAACGAACAATTTTCTATTGTCGCCTGCAAGCTTATTCCTACATCCCATTTGTCTCCCTCTTTATATAACTGTTCCTCTTTTTTAACTATATTATTCTATATCGACCTCGATCAACAAGAACAAGAGCAAGAAAAAATGATGAAAATTACTAGGGAAAGCGAAGAAATTGTTCTCCTCGAAGAACAATACGATGAATTAGAAGACGAATATGATGAAGAAGCATTATCACTGTGTGATCTTCCGAACAATGAAGAGGACGAAAAGAAGGAAGAAGTTTCTAGAAGTACTAGCGTAGAAGGCGGACAATTAGAAGATTTTGATTTTAGCTCTTCTGGTGGTAATTTGTTGAAAGAATCAGAGATGTGTACGGCAGATGAAATTTTCTACAAAGGCCAAATATTACCGTTGCGTCATTCAATTAGTTTGCCAAGTGATCGGCGCAATTGTCATGATACAAATTCAAGCAGTAGAAGTAGCAGTATTCGAAGCCAACGTTCATCTAGCAGTGGCAGTT</genome_strand>
        <mrna_strand>TTTATAATATAATCTATATAAATTAATACCATTCAAATGCATGCATTGTTAAATTAAAGTAGTCCCCACCATCTTCACTCTTCCCAAGTAGTAACAGAGAAGCCCAACTTTATTTTTCTCCGTAATAATCATTTGAAAGGCTTAAAAAAGCTCCACGCTGCTAAAAAAAAAGCCGGCTTTATTTGCGCCCCAATAGTATTCTTGACTTACAAACAAGGAACGAACAATTTTCTATTGTCGCCTGCAAGCTTATTCCTACATCCCATTTGTCTCCCTCTTTATATAACTGTTCCTCTTTTTTAACTATATTATTCTATATCGACCTCGATCAACAAGAACAAGAGCAAGAAAAAATGATGAAAATTACTAGGGAAAGCGAAGAAATTGTTCTCCTCGAAGAACAATACGATGAATTAGAAGACGAATATGATGAAGAAGCATTATCACTGTGTGATCTTCCGAACAATGAAGAGGACGAAAAGAAGGAAGAAGTTTCTAGAAGTACTAGCGTAGAAGGCGGACAATTAGAAGATTTTGATTTTAGCTCTTCTGGTGGTAATTTGTTGAAAGAATCAGAGATGTGTACGGCAGATGAAATTTTCTACAAAGGCCAAATATTACCGTTGCGTCATTCAATTAGTTTGCCAAGTGATCGGCGCAATTGTCATGATACAAATTCAAGCAGTAGAAGTAGCAGTATTCGAAGCCAACGTTCATCTAGCAGTGGCAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E324153" ref_strand="+" ref_description="SGN-E324153 [cTOC-4-C10]">
      <seq>aatagtattcttgacttacaaacaaggaacgaacaattttgtattgtcgcctgcaagcttattcctacatcccatttgtctccctctttatataactgttcctcttttttaactatattattctatatcgacctcgatcaacaagaacaagagcaagaaaaaatgatgaaaattactagggaaagcgaagaaattgttctcctcgaagaacaatacgatgaattagaagacgaatatgatgaagaagcattatcactgtgtgatcttccgaacaatgaagaggacgaaaagaaggaagaagtttctagaagtactagcgtagaaagcggacaattagaagattttgattttagctcttctggtggtaatttgttgaaagaatcagagatgtgtacggcagatgaaattttctacaaaggccaaatattacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="32631" stop="31601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32331" g_stop="31901" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E324153" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32331" e_stop="31901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAGTATTCTTGACTTACAAACAAGGAACGAACAATTTTCTATTGTCGCCTGCAAGCTTATTCCTACATCCCATTTGTCTCCCTCTTTATATAACTGTTCCTCTTTTTTAACTATATTATTCTATATCGACCTCGATCAACAAGAACAAGAGCAAGAAAAAATGATGAAAATTACTAGGGAAAGCGAAGAAATTGTTCTCCTCGAAGAACAATACGATGAATTAGAAGACGAATATGATGAAGAAGCATTATCACTGTGTGATCTTCCGAACAATGAAGAGGACGAAAAGAAGGAAGAAGTTTCTAGAAGTACTAGCGTAGAAGGCGGACAATTAGAAGATTTTGATTTTAGCTCTTCTGGTGGTAATTTGTTGAAAGAATCAGAGATGTGTACGGCAGATGAAATTTTCTACAAAGGCCAAATATTACC</genome_strand>
        <mrna_strand>AATAGTATTCTTGACTTACAAACAAGGAACGAACAATTTTGTATTGTCGCCTGCAAGCTTATTCCTACATCCCATTTGTCTCCCTCTTTATATAACTGTTCCTCTTTTTTAACTATATTATTCTATATCGACCTCGATCAACAAGAACAAGAGCAAGAAAAAATGATGAAAATTACTAGGGAAAGCGAAGAAATTGTTCTCCTCGAAGAACAATACGATGAATTAGAAGACGAATATGATGAAGAAGCATTATCACTGTGTGATCTTCCGAACAATGAAGAGGACGAAAAGAAGGAAGAAGTTTCTAGAAGTACTAGCGTAGAAAGCGGACAATTAGAAGATTTTGATTTTAGCTCTTCTGGTGGTAATTTGTTGAAAGAATCAGAGATGTGTACGGCAGATGAAATTTTCTACAAAGGCCAAATATTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E333441" ref_strand="+" ref_description="SGN-E333441 [cTOD-20-E5]">
      <seq>cttgacttacaaacaaggaacgaacaattttctattgtcgcctgcaagcttattcctacatcccatttgtctccctctttatataactgttcctcttttttaactatattattctatatcgacctcgatcaacaagaacaagagcaagaaaaaatgatgaaaattactagggaaagcgaagaaattgttctcctcgaagaacaatacgatgaattagaagacgaatatgatgaagaagcattatcactgtgtgatcttccgaacaatgaagaggacgaaaagaaggaagaagtttctagaagtactagcgtagaaggcggacaattagaagattttgattttagctcttctggtggtaatttgttgaaagaatcagagatgtgtacggcagatgaaattttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="32622" stop="31619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32322" g_stop="31919" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="404" r_length="404" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E333441" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32322" e_stop="31919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGACTTACAAACAAGGAACGAACAATTTTCTATTGTCGCCTGCAAGCTTATTCCTACATCCCATTTGTCTCCCTCTTTATATAACTGTTCCTCTTTTTTAACTATATTATTCTATATCGACCTCGATCAACAAGAACAAGAGCAAGAAAAAATGATGAAAATTACTAGGGAAAGCGAAGAAATTGTTCTCCTCGAAGAACAATACGATGAATTAGAAGACGAATATGATGAAGAAGCATTATCACTGTGTGATCTTCCGAACAATGAAGAGGACGAAAAGAAGGAAGAAGTTTCTAGAAGTACTAGCGTAGAAGGCGGACAATTAGAAGATTTTGATTTTAGCTCTTCTGGTGGTAATTTGTTGAAAGAATCAGAGATGTGTACGGCAGATGAAATTTTCTA</genome_strand>
        <mrna_strand>CTTGACTTACAAACAAGGAACGAACAATTTTCTATTGTCGCCTGCAAGCTTATTCCTACATCCCATTTGTCTCCCTCTTTATATAACTGTTCCTCTTTTTTAACTATATTATTCTATATCGACCTCGATCAACAAGAACAAGAGCAAGAAAAAATGATGAAAATTACTAGGGAAAGCGAAGAAATTGTTCTCCTCGAAGAACAATACGATGAATTAGAAGACGAATATGATGAAGAAGCATTATCACTGTGTGATCTTCCGAACAATGAAGAGGACGAAAAGAAGGAAGAAGTTTCTAGAAGTACTAGCGTAGAAGGCGGACAATTAGAAGATTTTGATTTTAGCTCTTCTGGTGGTAATTTGTTGAAAGAATCAGAGATGTGTACGGCAGATGAAATTTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E280331" ref_strand="+" ref_description="SGN-E280331 [cLER-1-O1]">
      <seq>tttataatataatctatataaattaataccattcaaatgcatgcattgttaaattaaagtagtccccaccatcttcactcttaccaagtagtaacagagaagcccaactttatttttctccggaataatcatttgaaaggcttaaaaaagctccacgctgctaaaaaaaaagccggctttatttgcgccccaatagtattcttgacttacaaacaaggaacgaacaattttctattgtcgcctgcaagcttattcctacatcccatttgtctccctctttatataactgttcctcttttttaactatattattctatatcgacctcgatcaacaagaacaagagncaagaaaaatgatgaaaattactagggaaagcgaagaaattgttctcctcgaagaacaatacgatgaattagaagacgaatatgatgaagaagcattatcactgtgtgatcttccgaacaatgaagaggacgaaaagaaggaagaagtttctagaagtactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="32822" stop="31715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32522" g_stop="32015" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="508" r_length="508" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E280331" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32522" e_stop="32015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATAATATAATCTATATAAATTAATACCATTCAAATGCATGCATTGTTAAATTAAAGTAGTCCCCACCATCTTCACTCTTCCCAAGTAGTAACAGAGAAGCCCAACTTTATTTTTCTCCGTAATAATCATTTGAAAGGCTTAAAAAAGCTCCACGCTGCTAAAAAAAAAGCCGGCTTTATTTGCGCCCCAATAGTATTCTTGACTTACAAACAAGGAACGAACAATTTTCTATTGTCGCCTGCAAGCTTATTCCTACATCCCATTTGTCTCCCTCTTTATATAACTGTTCCTCTTTTTTAACTATATTATTCTATATCGACCTCGATCAACAAGAACAAGAG-CAAGAAAAAATGATGAAAATTACTAGGGAAAGCGAAGAAATTGTTCTCCTCGAAGAACAATACGATGAATTAGAAGACGAATATGATGAAGAAGCATTATCACTGTGTGATCTTCCGAACAATGAAGAGGACGAAAAGAAGGAAGAAGTTTCTAGAAGTACTAG</genome_strand>
        <mrna_strand>TTTATAATATAATCTATATAAATTAATACCATTCAAATGCATGCATTGTTAAATTAAAGTAGTCCCCACCATCTTCACTCTTACCAAGTAGTAACAGAGAAGCCCAACTTTATTTTTCTCCGGAATAATCATTTGAAAGGCTTAAAAAAGCTCCACGCTGCTAAAAAAAAAGCCGGCTTTATTTGCGCCCCAATAGTATTCTTGACTTACAAACAAGGAACGAACAATTTTCTATTGTCGCCTGCAAGCTTATTCCTACATCCCATTTGTCTCCCTCTTTATATAACTGTTCCTCTTTTTTAACTATATTATTCTATATCGACCTCGATCAACAAGAACAAGAGNCAAG-AAAAATGATGAAAATTACTAGGGAAAGCGAAGAAATTGTTCTCCTCGAAGAACAATACGATGAATTAGAAGACGAATATGATGAAGAAGCATTATCACTGTGTGATCTTCCGAACAATGAAGAGGACGAAAAGAAGGAAGAAGTTTCTAGAAGTACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E714981" ref_strand="+" ref_description="SGN-E714981 [FB13AA03]">
      <seq>gaggattaatataacagagaggagaaagaaaagaaatggaaaagcaaagagatagtaataagggatgtatagatgagagaaaactagaaggattgccagtggatacaagtccatatacacagtataaggatttggaggattacaagcaacagggttatggaacacaaggccatcaacagcccaatcctgggcgtggtgctgccagttccaccgacgccccaaccctcgcaggtggtggatctgctgaagctcagctttctgctactgacaacatcaatcgccagggtgttccttaattaatttcgttaatttttagtcgcatttacaacagttattccttttttttacttgggtaaaatacgtatatgtagaataataacaataagaacgttctgaattagtgattctagatcttagattcgtccctgtttggtgttgtttgtatgttccttccgtcggcttgtaacttaataaatatatttttctaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="36319" stop="35230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36023" g_stop="35524" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="500" r_length="500" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E714981" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36023" e_stop="35524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATATTAATATAACAGAGAGGAGAAAGAAAAGAAATGGAAAAGCAAAGAGATAGTAATAAGGGATGTATAGATGAGAGAAAACTAGAAGGATTGCCAGTGGATACAAGTCCATATACACAGTATAAGGATTTGGAGGATTACAAGCAACAGGGTTATGGAACACAAGGCCATCAACAGCCCAATCCTGGGCGTGGTGCTGCCAGTTCCACCGACGCCCCAACCCTCGCAGGTGGTGGATCTGCTGAAGCTCAGCTTTCTGCTACTGACAACATCAATCGCCAGGGTGTTCCTTAATTAATTTCGTTAATTTTTAGTCGCATTTACAACAGTTATTCCTTTTTTTTACTTGGGTAAAATACGTATATGTAGAATAATAACAATAAGAACGTTCTGAATTAGTGATTCTAGATCTTAGATTCGTCCCTGTTTGGTGTTGTTTGTATGTTCCTTCCGTCGGCTTGTAACTTAATAAATATATTTTTCTAAAAATAAGTACTA</genome_strand>
        <mrna_strand>GAGGATTAATATAACAGAGAGGAGAAAGAAAAGAAATGGAAAAGCAAAGAGATAGTAATAAGGGATGTATAGATGAGAGAAAACTAGAAGGATTGCCAGTGGATACAAGTCCATATACACAGTATAAGGATTTGGAGGATTACAAGCAACAGGGTTATGGAACACAAGGCCATCAACAGCCCAATCCTGGGCGTGGTGCTGCCAGTTCCACCGACGCCCCAACCCTCGCAGGTGGTGGATCTGCTGAAGCTCAGCTTTCTGCTACTGACAACATCAATCGCCAGGGTGTTCCTTAATTAATTTCGTTAATTTTTAGTCGCATTTACAACAGTTATTCCTTTTTTTTACTTGGGTAAAATACGTATATGTAGAATAATAACAATAAGAACGTTCTGAATTAGTGATTCTAGATCTTAGATTCGTCCCTGTTTGGTGTTGTTTGTATGTTCCTTCCGTCGGCTTGTAACTTAATAAATATATTTTTCTAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E280866" ref_strand="+" ref_description="SGN-E280866 [cLEL-6-C11](-)">
      <seq>aaaaaaggaataactgttgtaaatgcgactaaaaattaccgaaattaattaaggaacaccctggcgattgatgttgtcagtagcagaaagctgagcttcagcagatccaccacctgcgagggttggggcgtcggtggaactggcagcaccacgcccaggattgggctgttgatggccttgtgttccataaccctgttgcttgtaatcctccaaatccttatactgtgtatatggacttgtatccactggcaagccttctagttttctctcatctatacatcccttattactatctctttgcttatccatttcttttctttctcctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="35380" stop="36305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35680" g_stop="36005" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E280866" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35680" e_stop="36005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGGAATAACTGTTGTAAATGCGACTAAAAATTAACGAAATTAATTAAGGAACACCCTGGCGATTGATGTTGTCAGTAGCAGAAAGCTGAGCTTCAGCAGATCCACCACCTGCGAGGGTTGGGGCGTCGGTGGAACTGGCAGCACCACGCCCAGGATTGGGCTGTTGATGGCCTTGTGTTCCATAACCCTGTTGCTTGTAATCCTCCAAATCCTTATACTGTGTATATGGACTTGTATCCACTGGCAATCCTTCTAGTTTTCTCTCATCTATACATCCCTTATTACTATCTCTTTGCTTTTCCATTTCTTTTCTTTCTCCTC</genome_strand>
        <mrna_strand>AAAAAAGGAATAACTGTTGTAAATGCGACTAAAAATTACCGAAATTAATTAAGGAACACCCTGGCGATTGATGTTGTCAGTAGCAGAAAGCTGAGCTTCAGCAGATCCACCACCTGCGAGGGTTGGGGCGTCGGTGGAACTGGCAGCACCACGCCCAGGATTGGGCTGTTGATGGCCTTGTGTTCCATAACCCTGTTGCTTGTAATCCTCCAAATCCTTATACTGTGTATATGGACTTGTATCCACTGGCAAGCCTTCTAGTTTTCTCTCATCTATACATCCCTTATTACTATCTCTTTGCTTATCCATTTCTTTTCTTTCTCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E280790" ref_strand="+" ref_description="SGN-E280790 [cLEL-6-D11](-)">
      <seq>aggaataactgttgtaaatgcgactaaaaattaacgaaattaattaaggaacaccctggcgattgatgttgtcagtagcagaaagctgagcttcagcagatccaccacctgcgagggttggggcgtcggtggaactggcagcaccacgcccaggattgggctgttgatggccttgtgttccataaccctgttgcttgtaatcctccaaatccttatactgtgtatatggacttgtatccactggggatccttctagttttctctcatctacacatcccttattactatctctttgaatttccatttcttttctttctcctcgtgccgaattcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="35385" stop="36309"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35685" g_stop="36020" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="335" r_length="335" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E280790" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35685" e_stop="36020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAATAACTGTTGTAAATGCGACTAAAAATTAACGAAATTAATTAAGGAACACCCTGGCGATTGATGTTGTCAGTAGCAGAAAGCTGAGCTTCAGCAGATCCACCACCTGCGAGGGTTGGGGCGTCGGTGGAACTGGCAGCACCACGCCCAGGATTGGGCTGTTGATGGCCTTGTGTTCCATAACCCTGTTGCTTGTAATCCTCCAAATCCTTATACTGTGTATATGGACTTGTATCCACTGGCAATCCTTCTAGTTTTCTCTCATCTATACATCCCTTATTACTATCTCTTTGCTTTTCCATTTCTTTTCTTTCTCCTCTCTGTTATATTAATA</genome_strand>
        <mrna_strand>AGGAATAACTGTTGTAAATGCGACTAAAAATTAACGAAATTAATTAAGGAACACCCTGGCGATTGATGTTGTCAGTAGCAGAAAGCTGAGCTTCAGCAGATCCACCACCTGCGAGGGTTGGGGCGTCGGTGGAACTGGCAGCACCACGCCCAGGATTGGGCTGTTGATGGCCTTGTGTTCCATAACCCTGTTGCTTGTAATCCTCCAAATCCTTATACTGTGTATATGGACTTGTATCCACTGGGGATCCTTCTAGTTTTCTCTCATCTACACATCCCTTATTACTATCTCTTTGAATTTCCATTTCTTTTCTTTCTCCTC-GTGCCGAATTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E349058" ref_strand="+" ref_description="SGN-E349058 [cTOS-2-A18]">
      <seq>tacaattgatccgacatctcttcacgggagctgtgcagtaatccgaggtgaaaaatgggttgccacaaagtggatcagggatcaagaaatggatgaataaacgagtacatgtctggaagtggtgttaatataattctttcgtaatttaatgtagccactcactggaacctttgagcgaattttacagtaaatatatctagtgtttgttcatattgatctgtgtcagttaacccttaatacgttacttgagtcttggttgctcccattacccacaaagctcaccccatcttgcagtaaaaaagaagtctaattgtaatgaccgtgcgaatgttttgtaataggatcagatcacgtgtttcaaaagtgttgtactaacacaaatattattatgacgctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="37037" stop="36046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36736" g_stop="36336" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="414" r_length="401" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E349058" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36736" e_stop="36336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATCTCTTCACGGGAGCTGTGCAGTAATCCGAGGTGAAAAATGGGTTGCCACAAAGTGGATCAGGGATCAAGAAATGGATGAATAAACGAGTACATGTCTGGAAGTGGTGTTAATATAATTCTTTCGTAATTTAATGTAGCCACTCACTGGAACCTTTGAGCGAATTTTACAGTAAATATATCTAGTGTTTGTTCATATTGATCTGTGTCAGTTAACCCTTAATACGTTACTTGAGTCTTGGTTGCTCCCATTACCCACAAAGCTCACCCCATCTTGCAGTAAAAAAGAAGTCTAATTGTAATGACCGTGCGAATGTTTTGTAATAGGATCAGATCACGTGTTTCAAAAGTGTTGTACTAACACAAATATTATTATGACGCTAAAAAGAATGTGTATAGA</genome_strand>
        <mrna_strand>ACATCTCTTCACGGGAGCTGTGCAGTAATCCGAGGTGAAAAATGGGTTGCCACAAAGTGGATCAGGGATCAAGAAATGGATGAATAAACGAGTACATGTCTGGAAGTGGTGTTAATATAATTCTTTCGTAATTTAATGTAGCCACTCACTGGAACCTTTGAGCGAATTTTACAGTAAATATATCTAGTGTTTGTTCATATTGATCTGTGTCAGTTAACCCTTAATACGTTACTTGAGTCTTGGTTGCTCCCATTACCCACAAAGCTCACCCCATCTTGCAGTAAAAAAGAAGTCTAATTGTAATGACCGTGCGAATGTTTTGTAATAGGATCAGATCACGTGTTTCAAAAGTGTTGTACTAACACAAATATTATTATGACGCTAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E597678" ref_strand="-" ref_description="SGN-E597678 [67549]">
      <seq>cctgtgcgtttttcaggcatttaatgttttgcggtacgaaaccggccagagttatcattcgcattatgatgcgtttgatccttctcaatatggtcctcagaagagccaaagggttgcatcctttttgttgtatttatctgaatgtggaagaaggtgntgagaaaccatgttccctttcgagagtgcacagaatatggatgctaattatgacttccgcaagtgtattggtctgaaagtgaagccgcgtagaggggatggactactattttactcgctgtttccaaatggtacaattgacccgacatcaattcacgggagctgtgcagtaatccgaggtgaaaaatgggttgccacaaagtggatcagggatcaagaaatggatgaataaacgagtacatgtctcgaagtggtgttgatataattcttttgtaatttaatgtagtgactcactaggattttgaaacgagttttgcagtaaatatatctagtgttcgttcaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="38865" stop="36238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38565" g_stop="38454" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38453" i_stop="37837" i_length="617">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.383" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37836" g_stop="37771" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="181" r_length="69" r_score="0.894"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37770" i_stop="37682" i_length="89">
            <donor d_prob="0.998" d_score="0.87"/>
            <acceptor a_prob="0.942" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37681" g_stop="37562" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="301" r_length="120" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37561" i_stop="36737" i_length="825">
            <donor d_prob="0.879" d_score="0.98"/>
            <acceptor a_prob="0.890" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36736" g_stop="36533" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="505" r_length="204" r_score="0.892"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E597678" ref_strand="-">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E597678" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="38565" e_stop="38454"/>
          <exon e_start="37836" e_stop="37771"/>
          <exon e_start="37681" e_stop="37562"/>
          <exon e_start="36736" e_stop="36533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGTGCGTTTTTCAGGCATTTAATGTTTTGCGGTACGAAATAGGCCAGAGTTATTATTCACATTATGATGCGTTTGATCCTTCTCAATATGGTCCTCAGAAGAGCCAAAGGGTATGCACTATCTACTTGGGTAAATTGTTGCTGTTAACTTTTCCAATTGACTTCTTAAATTTTTTACTAGCTCAATTCTTGCACAAACTAGCATAATGAATGGTGCATGGATTTGAGTGTTTGGTTATTGGGATAAGATGGTGTTGTTTTTCATATGCATGTTTCTTCCAATCCTCCTCCATCAAAAATATTTTTAGAATGGGGAAAATAAAGTTTGTTTGAAGCTATGGTTCATAAGACACTAGTTTGCAGATCCATTTCAATGACTTAATTTATACATGGAATCACCAATGGTGTGTTATCTGGATCACCACAAGGTGTATACAGCATTTCTTCCATTTAGAACTTTGTGGAACCCACATTAGTTTTATCCTTAATAAGCATATAGTTTTATCCGTTATATACATCTCTTTTTCTTTTATTTTCGCCCCTTTTGATGAAAAAGTTCTGTTTTTTGTCATCGATCCTTACATAACCATCATTTGTGGAGTGTTTAGAGCAAGTGTGCCATAGACTATAACTATGAAATTTGACATTTCATAATAGCTCAAATTGCAGTTAATTTTGAGTAATGATTATTTTCAGGGCCAGTCTAAAAATAATGTATTTTCATTTAGGTTGCATCCTTTTTGTTATATTTATCTG-ATGTGGAAGAAGGTG--GAGAAACCATGTTCCCTTTCGAGGTGAGTTCAAAGTTGTTTCTTCTTTCGTGGACTATTATTATATTTCTGCCTCTCATGTCGTGTAAATAAGTCCTTTGGTTAATTTACAGAATGCACAGAATATGGATGTTAATTATGACTTCCGCAAGTGTATTGGTCTGAAAGTGAAGCCGCGTAGAGGGGATGGACTACTATTTTACTCGCTGTTTCCAAATGGTACAATTGATCCGGTGAGTATTTGCTTGTAGATTTTAGTGTGATCGCCGTATTTCTTTGCATACAAAAGAAGTCTGATCCTTGGGGGGTAGGCCATCATCTACCGGAGCCATGTGCCTAGTCTCGAGGATCTCTGTTATTTTAACAAGGGTTGGTCATAACAGCTATGCAGCAAGCCAAGCATATTGTGAACCATTTATGACCTTATACTTTATAGCAGATGAATAGTATAAAGTGGATTTATATGATGCTGTTATGAAAATTTGTTACAAATGAGATTATCAGCAATAGGTTTGTTGGAACAGAAGACAAACTTTCTGTGCTCTTTTGCAGCGCGGTATACCATCATGCGCAGAGCTGTGATTCTTTTAGGATTTTAAAGCATTAGGAGTTGCCCACAGAATTAAAGATGATAAAGTTAAAGAAATGCCTACATCTTTCCAATGTCTTATTTGCTTTTGGTTTTGTTCTTTTTGTTTGTTTTGCTGTGTGTTTTCTTATTTCCTTTCTGCGGGAACCGTTCTTGATCAATCTGTCTACCATGATGCTATGGAGATGTTTGCTGAAGAGTCGCTATGGTGCTGCTAAAATCATTTTTGCTGATTGTGATTTATCAGTGTGAATGGTAGCGCATATTAGGTACCACCCCATCGAACAGATACTGATGGGAAAGGTTATAATATTGGTTCCCGTATGGCCTGTTTCACTGTTTCATTTTCTGTTGCTGATTCATCTCCTCTGGCTACTACTGGTTATAAAGCTGAATACTGATTACCAACATTATATCAGACTGCTCATGTTGGCTTGCAGTTACTCACATTTGTAAATCTCTTATGTAGACATCTCTTCACGGGAGCTGTGCAGTAATCCGAGGTGAAAAATGGGTTGCCACAAAGTGGATCAGGGATCAAGAAATGGATGAATAAACGAGTACATGTCTGGAAGTGGTGTTAATATAATTCTTTCGTAATTTAATGTAGCCACTCACTGGAACCTTTGAGCGAATTTTACAGTAAATATATCTAGTGTTTGTTCATATTGAT</genome_strand>
        <mrna_strand>CCTGTGCGTTTTTCAGGCATTTAATGTTTTGCGGTACGAAACCGGCCAGAGTTATCATTCGCATTATGATGCGTTTGATCCTTCTCAATATGGTCCTCAGAAGAGCCAAAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCATCCTTTTTGTTGTATTTATCTGAATGTGGAAGAAGGTGNTGAGAAACCATGTTCCCTTTCGAG.........................................................................................AGTGCACAGAATATGGATGCTAATTATGACTTCCGCAAGTGTATTGGTCTGAAAGTGAAGCCGCGTAGAGGGGATGGACTACTATTTTACTCGCTGTTTCCAAATGGTACAATTGACCCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCAATTCACGGGAGCTGTGCAGTAATCCGAGGTGAAAAATGGGTTGCCACAAAGTGGATCAGGGATCAAGAAATGGATGAATAAACGAGTACATGTCTCGAAGTGGTGTTGATATAATTCTTTTGTAATTTAATGTAGTGACTCACTAGGATTTTGAAACGAGTTTTGCAGTAAATATATCTAGTGTTCGTTCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E232181" ref_strand="+" ref_description="SGN-E232181 [cLEL-5-L2](-)">
      <seq>tcctttttgttatatttatctgatgtgaaagaaggtggagaaaccatgttccctttcgagaatgcacagaatatggatgttaattatgacttccgcaagtgtattggtctgaaagtgaagccgcgtagaggggatggactactattttactcgctgtttccaaatggtacaattgatccgacatctcttcacgggagctgtgcagtaatccgaggtgaaaaatgggttgccacaaagtggatcagggatcaagaaatggatgaataaacgagtacatgtctggaagtggtgttaatataattctttcgtaatttaatgtagccactcactggaacctttgagcgaattttacagtaaatatatctagtgtttgttcataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="38130" stop="36238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37830" g_stop="37771" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37770" i_stop="37682" i_length="89">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37681" g_stop="37562" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="180" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37561" i_stop="36737" i_length="825">
            <donor d_prob="0.879" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36736" g_stop="36539" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="378" r_length="198" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="379" polyA_stop="394"/>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E232181" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37830" e_stop="37771"/>
          <exon e_start="37681" e_stop="37562"/>
          <exon e_start="36736" e_stop="36539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTTTTGTTATATTTATCTGATGTGGAAGAAGGTGGAGAAACCATGTTCCCTTTCGAGGTGAGTTCAAAGTTGTTTCTTCTTTCGTGGACTATTATTATATTTCTGCCTCTCATGTCGTGTAAATAAGTCCTTTGGTTAATTTACAGAATGCACAGAATATGGATGTTAATTATGACTTCCGCAAGTGTATTGGTCTGAAAGTGAAGCCGCGTAGAGGGGATGGACTACTATTTTACTCGCTGTTTCCAAATGGTACAATTGATCCGGTGAGTATTTGCTTGTAGATTTTAGTGTGATCGCCGTATTTCTTTGCATACAAAAGAAGTCTGATCCTTGGGGGGTAGGCCATCATCTACCGGAGCCATGTGCCTAGTCTCGAGGATCTCTGTTATTTTAACAAGGGTTGGTCATAACAGCTATGCAGCAAGCCAAGCATATTGTGAACCATTTATGACCTTATACTTTATAGCAGATGAATAGTATAAAGTGGATTTATATGATGCTGTTATGAAAATTTGTTACAAATGAGATTATCAGCAATAGGTTTGTTGGAACAGAAGACAAACTTTCTGTGCTCTTTTGCAGCGCGGTATACCATCATGCGCAGAGCTGTGATTCTTTTAGGATTTTAAAGCATTAGGAGTTGCCCACAGAATTAAAGATGATAAAGTTAAAGAAATGCCTACATCTTTCCAATGTCTTATTTGCTTTTGGTTTTGTTCTTTTTGTTTGTTTTGCTGTGTGTTTTCTTATTTCCTTTCTGCGGGAACCGTTCTTGATCAATCTGTCTACCATGATGCTATGGAGATGTTTGCTGAAGAGTCGCTATGGTGCTGCTAAAATCATTTTTGCTGATTGTGATTTATCAGTGTGAATGGTAGCGCATATTAGGTACCACCCCATCGAACAGATACTGATGGGAAAGGTTATAATATTGGTTCCCGTATGGCCTGTTTCACTGTTTCATTTTCTGTTGCTGATTCATCTCCTCTGGCTACTACTGGTTATAAAGCTGAATACTGATTACCAACATTATATCAGACTGCTCATGTTGGCTTGCAGTTACTCACATTTGTAAATCTCTTATGTAGACATCTCTTCACGGGAGCTGTGCAGTAATCCGAGGTGAAAAATGGGTTGCCACAAAGTGGATCAGGGATCAAGAAATGGATGAATAAACGAGTACATGTCTGGAAGTGGTGTTAATATAATTCTTTCGTAATTTAATGTAGCCACTCACTGGAACCTTTGAGCGAATTTTACAGTAAATATATCTAGTGTTTGTTCAT</genome_strand>
        <mrna_strand>TCCTTTTTGTTATATTTATCTGATGTGAAAGAAGGTGGAGAAACCATGTTCCCTTTCGAG.........................................................................................AATGCACAGAATATGGATGTTAATTATGACTTCCGCAAGTGTATTGGTCTGAAAGTGAAGCCGCGTAGAGGGGATGGACTACTATTTTACTCGCTGTTTCCAAATGGTACAATTGATCCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCTCTTCACGGGAGCTGTGCAGTAATCCGAGGTGAAAAATGGGTTGCCACAAAGTGGATCAGGGATCAAGAAATGGATGAATAAACGAGTACATGTCTGGAAGTGGTGTTAATATAATTCTTTCGTAATTTAATGTAGCCACTCACTGGAACCTTTGAGCGAATTTTACAGTAAATATATCTAGTGTTTGTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E232681" ref_strand="+" ref_description="SGN-E232681 [cLEL-5-L2](-)">
      <seq>gatgttaattatgacttcccgcaagtgtattggtctgaaagtgaagccgcgtagaggggatggactactattttactcgctgtttccaaatggtacaattgatccgacatctcttcacgggagctgtgcagtaatccgaggtgaaaaatgggttgccacaaagtggatcagggatcaagaaatggatgaataaacgagtacatgtctggaagtggtgttaatataattctttcgtaatttaatgtagccactcactggaacctttgagcgaattttacagtaaatatatctagtgtttgttcataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="37966" stop="36238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37666" g_stop="37562" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37561" i_stop="36737" i_length="825">
            <donor d_prob="0.879" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36736" g_stop="36539" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="304" r_length="198" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="305" polyA_stop="320"/>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E232681" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>303</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37666" e_stop="37562"/>
          <exon e_start="36736" e_stop="36539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTTAATTATGACTT-CCGCAAGTGTATTGGTCTGAAAGTGAAGCCGCGTAGAGGGGATGGACTACTATTTTACTCGCTGTTTCCAAATGGTACAATTGATCCGGTGAGTATTTGCTTGTAGATTTTAGTGTGATCGCCGTATTTCTTTGCATACAAAAGAAGTCTGATCCTTGGGGGGTAGGCCATCATCTACCGGAGCCATGTGCCTAGTCTCGAGGATCTCTGTTATTTTAACAAGGGTTGGTCATAACAGCTATGCAGCAAGCCAAGCATATTGTGAACCATTTATGACCTTATACTTTATAGCAGATGAATAGTATAAAGTGGATTTATATGATGCTGTTATGAAAATTTGTTACAAATGAGATTATCAGCAATAGGTTTGTTGGAACAGAAGACAAACTTTCTGTGCTCTTTTGCAGCGCGGTATACCATCATGCGCAGAGCTGTGATTCTTTTAGGATTTTAAAGCATTAGGAGTTGCCCACAGAATTAAAGATGATAAAGTTAAAGAAATGCCTACATCTTTCCAATGTCTTATTTGCTTTTGGTTTTGTTCTTTTTGTTTGTTTTGCTGTGTGTTTTCTTATTTCCTTTCTGCGGGAACCGTTCTTGATCAATCTGTCTACCATGATGCTATGGAGATGTTTGCTGAAGAGTCGCTATGGTGCTGCTAAAATCATTTTTGCTGATTGTGATTTATCAGTGTGAATGGTAGCGCATATTAGGTACCACCCCATCGAACAGATACTGATGGGAAAGGTTATAATATTGGTTCCCGTATGGCCTGTTTCACTGTTTCATTTTCTGTTGCTGATTCATCTCCTCTGGCTACTACTGGTTATAAAGCTGAATACTGATTACCAACATTATATCAGACTGCTCATGTTGGCTTGCAGTTACTCACATTTGTAAATCTCTTATGTAGACATCTCTTCACGGGAGCTGTGCAGTAATCCGAGGTGAAAAATGGGTTGCCACAAAGTGGATCAGGGATCAAGAAATGGATGAATAAACGAGTACATGTCTGGAAGTGGTGTTAATATAATTCTTTCGTAATTTAATGTAGCCACTCACTGGAACCTTTGAGCGAATTTTACAGTAAATATATCTAGTGTTTGTTCAT</genome_strand>
        <mrna_strand>GATGTTAATTATGACTTCCCGCAAGTGTATTGGTCTGAAAGTGAAGCCGCGTAGAGGGGATGGACTACTATTTTACTCGCTGTTTCCAAATGGTACAATTGATCCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCTCTTCACGGGAGCTGTGCAGTAATCCGAGGTGAAAAATGGGTTGCCACAAAGTGGATCAGGGATCAAGAAATGGATGAATAAACGAGTACATGTCTGGAAGTGGTGTTAATATAATTCTTTCGTAATTTAATGTAGCCACTCACTGGAACCTTTGAGCGAATTTTACAGTAAATATATCTAGTGTTTGTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E234776" ref_strand="+" ref_description="SGN-E234776 [cLEL-6-A2](-)">
      <seq>aatggtacaattgatcggacatctcttcaggggagctgtgcagtaatccgaggttaaaaatgggttgccacaaagtggatcagggatcaacaaatggatggataaacgagtacatgtctggaagtggtgttaatataattcattcgtaatttaatgtagccacccactggaacctttgagcgaattttacagtaaatatatctagtgtttgttccaaaaacaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="37879" stop="36238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37579" g_stop="37562" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37561" i_stop="36737" i_length="825">
            <donor d_prob="0.879" d_score="0.00"/>
            <acceptor a_prob="0.890" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36736" g_stop="36541" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="214" r_length="196" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="216" polyA_stop="237"/>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E234776" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>214</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37579" e_stop="37562"/>
          <exon e_start="36736" e_stop="36541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGTACAATTGATCCGGTGAGTATTTGCTTGTAGATTTTAGTGTGATCGCCGTATTTCTTTGCATACAAAAGAAGTCTGATCCTTGGGGGGTAGGCCATCATCTACCGGAGCCATGTGCCTAGTCTCGAGGATCTCTGTTATTTTAACAAGGGTTGGTCATAACAGCTATGCAGCAAGCCAAGCATATTGTGAACCATTTATGACCTTATACTTTATAGCAGATGAATAGTATAAAGTGGATTTATATGATGCTGTTATGAAAATTTGTTACAAATGAGATTATCAGCAATAGGTTTGTTGGAACAGAAGACAAACTTTCTGTGCTCTTTTGCAGCGCGGTATACCATCATGCGCAGAGCTGTGATTCTTTTAGGATTTTAAAGCATTAGGAGTTGCCCACAGAATTAAAGATGATAAAGTTAAAGAAATGCCTACATCTTTCCAATGTCTTATTTGCTTTTGGTTTTGTTCTTTTTGTTTGTTTTGCTGTGTGTTTTCTTATTTCCTTTCTGCGGGAACCGTTCTTGATCAATCTGTCTACCATGATGCTATGGAGATGTTTGCTGAAGAGTCGCTATGGTGCTGCTAAAATCATTTTTGCTGATTGTGATTTATCAGTGTGAATGGTAGCGCATATTAGGTACCACCCCATCGAACAGATACTGATGGGAAAGGTTATAATATTGGTTCCCGTATGGCCTGTTTCACTGTTTCATTTTCTGTTGCTGATTCATCTCCTCTGGCTACTACTGGTTATAAAGCTGAATACTGATTACCAACATTATATCAGACTGCTCATGTTGGCTTGCAGTTACTCACATTTGTAAATCTCTTATGTAGACATCTCTTCACGGGAGCTGTGCAGTAATCCGAGGTGAAAAATGGGTTGCCACAAAGTGGATCAGGGATCAAGAAATGGATGAATAAACGAGTACATGTCTGGAAGTGGTGTTAATATAATTCTTTCGTAATTTAATGTAGCCACTCACTGGAACCTTTGAGCGAATTTTACAGTAAATATATCTAGTGTTTGTTC</genome_strand>
        <mrna_strand>AATGGTACAATTGATCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCTCTTCAGGGGAGCTGTGCAGTAATCCGAGGTTAAAAATGGGTTGCCACAAAGTGGATCAGGGATCAACAAATGGATGGATAAACGAGTACATGTCTGGAAGTGGTGTTAATATAATTCATTCGTAATTTAATGTAGCCACCCACTGGAACCTTTGAGCGAATTTTACAGTAAATATATCTAGTGTTTGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E709282" ref_strand="+" ref_description="SGN-E709282 [FA51BA06]">
      <seq>cgggaagaagatgaagagcaaaggtagattagtgggacaaagatggcggagcatagggggcttaccttcaatatttctgctatgtcttttcttgttcttcgccggtttattcggttctactctcgtttctcatcaggatgtacaactacttactgtacggcctaggtcaagggtgcttaaatctgtggaagaatttgatgttttgcctaatggcgacactggagaacactcccttacttccatccccttccaggtcttaagctggttcccacgtgcattatactttcccaatttcgcaactacagaacaatgccaaggcataattaagatggcaaaggcagaactgaaaccatcatctttggctctccgcaaaggagaaacagcagaaaataccaaaggagttagaacaagttctggtatgtttatcagtgcatctgaagacaaaactggaattctggacctcattgaggagaaaatcgcaaaggcgactatgatccccaggacacacggagaggcatttaatgttttgcggtacgaaataggccagagttattattcacattatgatgcgtttgatccttctcaatatggtcctcagaagagccaaagggttgcatccctttttgttatatttatctgatgtggaagaaggtggagaaaccatgttccctttcgagaatgcacagaatatggatgttaattatgacttccgcaagtgtattggtctgaaagtgaagccgcgtagagggggatggactactattttactcgctgtttccaaatggtacaattgatccgacatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="41875" stop="37262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41575" g_stop="41440" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41439" i_stop="41370" i_length="70">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.637" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41369" g_stop="41253" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="253" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41252" i_stop="40366" i_length="887">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40365" g_stop="40208" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="411" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40207" i_stop="39844" i_length="364">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39843" g_stop="39741" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="514" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="39740" i_stop="38550" i_length="1191">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38549" g_stop="38454" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="610" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38453" i_stop="37837" i_length="617">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.383" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="37836" g_stop="37771" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="677" r_length="67" r_score="0.970"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="37770" i_stop="37682" i_length="89">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="37681" g_stop="37562" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="678" r_stop="798" r_length="121" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E709282" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41575" e_stop="41440"/>
          <exon e_start="41369" e_stop="41253"/>
          <exon e_start="40365" e_stop="40208"/>
          <exon e_start="39843" e_stop="39741"/>
          <exon e_start="38549" e_stop="38454"/>
          <exon e_start="37836" e_stop="37771"/>
          <exon e_start="37681" e_stop="37562"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGAAGAAGATGAAGAGCAAAGGTAGATTAGTGGGACAAAGATGGCGGAGCATAGGGGGCTTACCTTCAATATTTCTGCTATGTCTTTTCTTGTTCTTCGCCGGTTTATTCGGTTCTACTCTCGTTTCTCATCAGGTATTTCCCTTATTATTTGCTAGACGCCTCTGTCATATGCGTTTCTAATCAAAGTGTTTGGGTGTGATAGGATGTACAACTACTTACTGTACGGCCTAGGTCAAGGGTGCTTAAATCTGTGGAAGAATTTGATGTTTTGCCTAATGGCGACACTGGAGAACACTCCCTTACTTCCATCCCCTTCCAGGTATATTTCATTGCTCAGTTCTCCTTGCTGAATTAGCGCTGGTTCGATTTCAAGTCTAACCGTTTTTGTTTGAAAAATTGTTCATACTGTAGTTGAACTTACATTAGTCCGCCAAGCTTTTTAATTATTGTTTCGATGTTCTCCTGGATTTGCACTTTTGGTTGGTTGATATGCGGATTTTCTCATAGCTATTTTATTTTGATTATCAACCGTTGAGATTGTTGCCGCTGATGCAATAATATTACTTTTCTTAATGTTGAAGTAGCATAACTTGATTTTTTCGGTAAGTAAACCAGATAGATAATGGCACAGCCCATTTGAATTGGTTTAAAAGTCGAGCAAATTACTTATCAATTTTTGACAAAAATAAAAAATAATTTAAAATAACTGAAATTGACTTAAAATAAATCAAAAATGACTTGAAATAAGTGAAAAATAAATTAAGATAGGTCTTCCTTGCTTTTTATTTTTTTAACTTGTTAAGTCATTTCCGTTTGACTTTTTAATTTCAACTTAAATAACTATTTTTGTAAGCCAATTCAAACGTGTTCTAAGTAAGTTTAAGAACAAATATGCATACTCTAATTTCTCTTATTCTGCCACTTCATCTACACTTTCTGCTTATATTTCTATGATTCCTGTTTTTCTATGGTTGACTGGGGGAAGATTTGTGTGGAGGAAGCAGTGAAGTAGGCATGTCATTAAGTCTATAGGCAAAATAGCTGGTAGCTGTGACTGATCATGTTAGCTTCCTAAACATAAACCTAAGCTGGTAAAAATTTTGTTCATGGTACTCATTGACTATAAAGTCTAGTATCTCTGATTTGCATTAGTATTCATTTGTTTTGGTTTATCTTATTTGACATCGACTTCAATCTTTTGGGTAGGTCTTAAGCTGGTTCCCACGTGCATTATACTTTCCCAATTTCGCAACTACAGAACAATGCCAAGGCATAATTAAGATGGCAAAGGCAGAACTGAAACCATCATCTTTGGCTCTCCGCAAAGGAGAAACAGCAGAAAATACCAAAGGAGTTAGAACAAGGTAAACAATACTCTGGTGTTCTATGTGTCCTGACTGATGTTTTGTCATAAATGCAATCTTTTCACTCTTTCCAAGCATTAGATTTAACTCTTAATACACTCATACTTCCATAATATCTATTTCTAGTAGACAAGATAAATATGTCACCAAAATTGAGTGTGTTCACATACATTTTCTACTTTTTTGGAAGATAAAATTGTTCATGGTGTTTGAACTGGCCATATGTCTCTGTCCTTTTTCAGGTCATTTGTTTTATATTTCTTTGATCTGTTGTCAAGACTATTTGATAAAAGTTTGCTGCCTCTTTTGGTTTTGACATGAAGTTACAATTTGAATGACTTTTGCTTTTCCCCCTTTCCCACAGTTCTGGTATGTTTATCAGTGCATCTGAAGACAAAACTGGAATTCTGGACCTCATTGAGGAGAAAATCGCAAAGGCGACTATGATCCCCAGGACACACGGAGAGGTGAATTTCATTTAAAACACACATCTTAAATATGACGCATGAAGTGGTTCTTACTGTGTATTAGTTTTATCATTCCATCCACACCTCAGAAATTGGATCTCAATAGAGGACATAATAGTTGTATTATTGGTGGGGAATCATTTTCCCAAGCTTCTTCATTTCCTTCCTCTTCTTCATCTTCTATTTTCTTGAAAACTATGTTGATTCAAGCTCTGGTTCTACTTCTACAAAATGCTGGACAACTATATTAGTGATTTTAGGTTTCCACTAGCAAATGCATTCTTCCAATTGTTATCAACACTGAAGAAAACAAGTCTTTTGGTGTTGGAGGTAAATATTAACTGGTTGTACAATCACATTTTTTTTTACCAGATTTAAGGCCATATATGTCAAACACCAAACATATTTTGGTCTTCGTGTTCTTTTCACCTCATATCTGAAAATTTAAATGGGTATCTGCTGCGGAAAGATGGAATTGGTCTGCTTTTGTTTTTGGACAGATCAGTATGTGTTAGCAATGGCAAGATTAAATTGACACTACAATGATCATTGAATGGAAATGATATGATTATTTTTTGTCCGAATCATTCATACCGTACCAATATAGATTTTTGTCAAAGGTTTCACATGGAAATTTAACTTGAAAATCCTATATATATTTCCATTTGAAAGCTTTTTGTTCCAATTTTACTTATGCAAAAGAGCTCATTCGATGTAATTGACGGTTCGTTTCCTCTTCTATATGAACTATCCAGCTGTCACATGGTCTAGTCTGTATGTATTCTAACAAGAGACCATGACAAAACAATGAGGCAACAGATCAAGGTGTGCATTTTAACAGGAAGTTAGAGAACTGAACATCTCTTGCTGCTGTATACTTTAATTTATAGTTGGGGATATCTGGCTTTTGAGTATTATCTGAAACTGGAGTTCTTTTGCTGGATTCCCGGATATTTGTTCGATTTCGTCCTAGAATTGAGTCAAATGTGATGATGCAAATAATTCTTGCTATGTACATTATGCATCTGATAAATAATAGGTAGTCAGGCTGTAACCCCTTTGTGTCTGGACTTTCTCTTATTTTCATATAGTGATTCTGAATGATTTTTCTGTTAATGAAAGCTCCAAGTATGGTGTACAGTGATCATAATTGCTGTTTAACTTGAATCAGTTGACCTGTGCGTTTTTCAGGCATTTAATGTTTTGCGGTACGAAATAGGCCAGAGTTATTATTCACATTATGATGCGTTTGATCCTTCTCAATATGGTCCTCAGAAGAGCCAAAGGGTATGCACTATCTACTTGGGTAAATTGTTGCTGTTAACTTTTCCAATTGACTTCTTAAATTTTTTACTAGCTCAATTCTTGCACAAACTAGCATAATGAATGGTGCATGGATTTGAGTGTTTGGTTATTGGGATAAGATGGTGTTGTTTTTCATATGCATGTTTCTTCCAATCCTCCTCCATCAAAAATATTTTTAGAATGGGGAAAATAAAGTTTGTTTGAAGCTATGGTTCATAAGACACTAGTTTGCAGATCCATTTCAATGACTTAATTTATACATGGAATCACCAATGGTGTGTTATCTGGATCACCACAAGGTGTATACAGCATTTCTTCCATTTAGAACTTTGTGGAACCCACATTAGTTTTATCCTTAATAAGCATATAGTTTTATCCGTTATATACATCTCTTTTTCTTTTATTTTCGCCCCTTTTGATGAAAAAGTTCTGTTTTTTGTCATCGATCCTTACATAACCATCATTTGTGGAGTGTTTAGAGCAAGTGTGCCATAGACTATAACTATGAAATTTGACATTTCATAATAGCTCAAATTGCAGTTAATTTTGAGTAATGATTATTTTCAGGGCCAGTCTAAAAATAATGTATTTTCATTTAGGTTGCAT-CCTTTTTGTTATATTTATCTGATGTGGAAGAAGGTGGAGAAACCATGTTCCCTTTCGAGGTGAGTTCAAAGTTGTTTCTTCTTTCGTGGACTATTATTATATTTCTGCCTCTCATGTCGTGTAAATAAGTCCTTTGGTTAATTTACAGAATGCACAGAATATGGATGTTAATTATGACTTCCGCAAGTGTATTGGTCTGAAAGTGAAGCCGCGTAGA-GGGGATGGACTACTATTTTACTCGCTGTTTCCAAATGGTACAATTGATCCG</genome_strand>
        <mrna_strand>CGGGAAGAAGATGAAGAGCAAAGGTAGATTAGTGGGACAAAGATGGCGGAGCATAGGGGGCTTACCTTCAATATTTCTGCTATGTCTTTTCTTGTTCTTCGCCGGTTTATTCGGTTCTACTCTCGTTTCTCATCAG......................................................................GATGTACAACTACTTACTGTACGGCCTAGGTCAAGGGTGCTTAAATCTGTGGAAGAATTTGATGTTTTGCCTAATGGCGACACTGGAGAACACTCCCTTACTTCCATCCCCTTCCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTAAGCTGGTTCCCACGTGCATTATACTTTCCCAATTTCGCAACTACAGAACAATGCCAAGGCATAATTAAGATGGCAAAGGCAGAACTGAAACCATCATCTTTGGCTCTCCGCAAAGGAGAAACAGCAGAAAATACCAAAGGAGTTAGAACAAG............................................................................................................................................................................................................................................................................................................................................................................TTCTGGTATGTTTATCAGTGCATCTGAAGACAAAACTGGAATTCTGGACCTCATTGAGGAGAAAATCGCAAAGGCGACTATGATCCCCAGGACACACGGAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTTAATGTTTTGCGGTACGAAATAGGCCAGAGTTATTATTCACATTATGATGCGTTTGATCCTTCTCAATATGGTCCTCAGAAGAGCCAAAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCATCCCTTTTTGTTATATTTATCTGATGTGGAAGAAGGTGGAGAAACCATGTTCCCTTTCGAG.........................................................................................AATGCACAGAATATGGATGTTAATTATGACTTCCGCAAGTGTATTGGTCTGAAAGTGAAGCCGCGTAGAGGGGGATGGACTACTATTTTACTCGCTGTTTCCAAATGGTACAATTGATCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E441739" ref_strand="+" ref_description="SGN-E441739 [cSTA-31-A18]">
      <seq>tcaggaagaagatgaagagcaaaggtagattcgttggacaaagatggtggagcataaggggcttaccttcagtatttctgctatgtcttttcttcttcctcgccggtttattcggttctactctcatttctcatcaggatgtacaactacttactgtacggcctaggtcgagggtgcttgaatctgtggaagaatttgatgttttgcctaatggcgacactggagaacattccctcacttccatcccctttcaggtcttaagctggttcccacgtgcattatactttcccaatttcgcaactatagaacaatgccaaggcattattaagatggcaaaggcagatctgaaaccatcatctttggctctccgcaaaggagaaacagcagagaataccaaaggaattagaacaagttctggtatgtttatcagtgcatctgaagacaaaactggaattctggacctcattgaggagaaaatcgcaaaggcgactatgatccccaggacacacggagaggcatttaatgttttgcggtacgaaaccggccagagttatcattcgcattatgatgcgttttgatccttctcaatatggtcctcagaagagccaaagggttgcatccttttttgttgtatttatctgatgtggaagaaggtggagaaaccatgttccctttcgagagtgcacagaatatggatgctaattatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="41876" stop="37353"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41576" g_stop="41440" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41439" i_stop="41370" i_length="70">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.637" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41369" g_stop="41253" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="254" r_length="117" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41252" i_stop="40366" i_length="887">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.949" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40365" g_stop="40208" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="412" r_length="158" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40207" i_stop="39844" i_length="364">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39843" g_stop="39741" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="515" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="39740" i_stop="38550" i_length="1191">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38549" g_stop="38454" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="612" r_length="97" r_score="0.938"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38453" i_stop="37837" i_length="617">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.383" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="37836" g_stop="37771" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="679" r_length="67" r_score="0.955"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="37770" i_stop="37682" i_length="89">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.942" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="37681" g_stop="37653" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="680" r_stop="708" r_length="29" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E441739" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E441739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41576" e_stop="41440"/>
          <exon e_start="41369" e_stop="41253"/>
          <exon e_start="40365" e_stop="40208"/>
          <exon e_start="39843" e_stop="39741"/>
          <exon e_start="38549" e_stop="38454"/>
          <exon e_start="37836" e_stop="37771"/>
          <exon e_start="37681" e_stop="37653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGAAGAAGATGAAGAGCAAAGGTAGATTAGTGGGACAAAGATGGCGGAGCATAGGGGGCTTACCTTCAATATTTCTGCTATGTCTTTTCTTGTTCTTCGCCGGTTTATTCGGTTCTACTCTCGTTTCTCATCAGGTATTTCCCTTATTATTTGCTAGACGCCTCTGTCATATGCGTTTCTAATCAAAGTGTTTGGGTGTGATAGGATGTACAACTACTTACTGTACGGCCTAGGTCAAGGGTGCTTAAATCTGTGGAAGAATTTGATGTTTTGCCTAATGGCGACACTGGAGAACACTCCCTTACTTCCATCCCCTTCCAGGTATATTTCATTGCTCAGTTCTCCTTGCTGAATTAGCGCTGGTTCGATTTCAAGTCTAACCGTTTTTGTTTGAAAAATTGTTCATACTGTAGTTGAACTTACATTAGTCCGCCAAGCTTTTTAATTATTGTTTCGATGTTCTCCTGGATTTGCACTTTTGGTTGGTTGATATGCGGATTTTCTCATAGCTATTTTATTTTGATTATCAACCGTTGAGATTGTTGCCGCTGATGCAATAATATTACTTTTCTTAATGTTGAAGTAGCATAACTTGATTTTTTCGGTAAGTAAACCAGATAGATAATGGCACAGCCCATTTGAATTGGTTTAAAAGTCGAGCAAATTACTTATCAATTTTTGACAAAAATAAAAAATAATTTAAAATAACTGAAATTGACTTAAAATAAATCAAAAATGACTTGAAATAAGTGAAAAATAAATTAAGATAGGTCTTCCTTGCTTTTTATTTTTTTAACTTGTTAAGTCATTTCCGTTTGACTTTTTAATTTCAACTTAAATAACTATTTTTGTAAGCCAATTCAAACGTGTTCTAAGTAAGTTTAAGAACAAATATGCATACTCTAATTTCTCTTATTCTGCCACTTCATCTACACTTTCTGCTTATATTTCTATGATTCCTGTTTTTCTATGGTTGACTGGGGGAAGATTTGTGTGGAGGAAGCAGTGAAGTAGGCATGTCATTAAGTCTATAGGCAAAATAGCTGGTAGCTGTGACTGATCATGTTAGCTTCCTAAACATAAACCTAAGCTGGTAAAAATTTTGTTCATGGTACTCATTGACTATAAAGTCTAGTATCTCTGATTTGCATTAGTATTCATTTGTTTTGGTTTATCTTATTTGACATCGACTTCAATCTTTTGGGTAGGTCTTAAGCTGGTTCCCACGTGCATTATACTTTCCCAATTTCGCAACTACAGAACAATGCCAAGGCATAATTAAGATGGCAAAGGCAGAACTGAAACCATCATCTTTGGCTCTCCGCAAAGGAGAAACAGCAGAAAATACCAAAGGAGTTAGAACAAGGTAAACAATACTCTGGTGTTCTATGTGTCCTGACTGATGTTTTGTCATAAATGCAATCTTTTCACTCTTTCCAAGCATTAGATTTAACTCTTAATACACTCATACTTCCATAATATCTATTTCTAGTAGACAAGATAAATATGTCACCAAAATTGAGTGTGTTCACATACATTTTCTACTTTTTTGGAAGATAAAATTGTTCATGGTGTTTGAACTGGCCATATGTCTCTGTCCTTTTTCAGGTCATTTGTTTTATATTTCTTTGATCTGTTGTCAAGACTATTTGATAAAAGTTTGCTGCCTCTTTTGGTTTTGACATGAAGTTACAATTTGAATGACTTTTGCTTTTCCCCCTTTCCCACAGTTCTGGTATGTTTATCAGTGCATCTGAAGACAAAACTGGAATTCTGGACCTCATTGAGGAGAAAATCGCAAAGGCGACTATGATCCCCAGGACACACGGAGAGGTGAATTTCATTTAAAACACACATCTTAAATATGACGCATGAAGTGGTTCTTACTGTGTATTAGTTTTATCATTCCATCCACACCTCAGAAATTGGATCTCAATAGAGGACATAATAGTTGTATTATTGGTGGGGAATCATTTTCCCAAGCTTCTTCATTTCCTTCCTCTTCTTCATCTTCTATTTTCTTGAAAACTATGTTGATTCAAGCTCTGGTTCTACTTCTACAAAATGCTGGACAACTATATTAGTGATTTTAGGTTTCCACTAGCAAATGCATTCTTCCAATTGTTATCAACACTGAAGAAAACAAGTCTTTTGGTGTTGGAGGTAAATATTAACTGGTTGTACAATCACATTTTTTTTTACCAGATTTAAGGCCATATATGTCAAACACCAAACATATTTTGGTCTTCGTGTTCTTTTCACCTCATATCTGAAAATTTAAATGGGTATCTGCTGCGGAAAGATGGAATTGGTCTGCTTTTGTTTTTGGACAGATCAGTATGTGTTAGCAATGGCAAGATTAAATTGACACTACAATGATCATTGAATGGAAATGATATGATTATTTTTTGTCCGAATCATTCATACCGTACCAATATAGATTTTTGTCAAAGGTTTCACATGGAAATTTAACTTGAAAATCCTATATATATTTCCATTTGAAAGCTTTTTGTTCCAATTTTACTTATGCAAAAGAGCTCATTCGATGTAATTGACGGTTCGTTTCCTCTTCTATATGAACTATCCAGCTGTCACATGGTCTAGTCTGTATGTATTCTAACAAGAGACCATGACAAAACAATGAGGCAACAGATCAAGGTGTGCATTTTAACAGGAAGTTAGAGAACTGAACATCTCTTGCTGCTGTATACTTTAATTTATAGTTGGGGATATCTGGCTTTTGAGTATTATCTGAAACTGGAGTTCTTTTGCTGGATTCCCGGATATTTGTTCGATTTCGTCCTAGAATTGAGTCAAATGTGATGATGCAAATAATTCTTGCTATGTACATTATGCATCTGATAAATAATAGGTAGTCAGGCTGTAACCCCTTTGTGTCTGGACTTTCTCTTATTTTCATATAGTGATTCTGAATGATTTTTCTGTTAATGAAAGCTCCAAGTATGGTGTACAGTGATCATAATTGCTGTTTAACTTGAATCAGTTGACCTGTGCGTTTTTCAGGCATTTAATGTTTTGCGGTACGAAATAGGCCAGAGTTATTATTCACATTATGATGCG-TTTGATCCTTCTCAATATGGTCCTCAGAAGAGCCAAAGGGTATGCACTATCTACTTGGGTAAATTGTTGCTGTTAACTTTTCCAATTGACTTCTTAAATTTTTTACTAGCTCAATTCTTGCACAAACTAGCATAATGAATGGTGCATGGATTTGAGTGTTTGGTTATTGGGATAAGATGGTGTTGTTTTTCATATGCATGTTTCTTCCAATCCTCCTCCATCAAAAATATTTTTAGAATGGGGAAAATAAAGTTTGTTTGAAGCTATGGTTCATAAGACACTAGTTTGCAGATCCATTTCAATGACTTAATTTATACATGGAATCACCAATGGTGTGTTATCTGGATCACCACAAGGTGTATACAGCATTTCTTCCATTTAGAACTTTGTGGAACCCACATTAGTTTTATCCTTAATAAGCATATAGTTTTATCCGTTATATACATCTCTTTTTCTTTTATTTTCGCCCCTTTTGATGAAAAAGTTCTGTTTTTTGTCATCGATCCTTACATAACCATCATTTGTGGAGTGTTTAGAGCAAGTGTGCCATAGACTATAACTATGAAATTTGACATTTCATAATAGCTCAAATTGCAGTTAATTTTGAGTAATGATTATTTTCAGGGCCAGTCTAAAAATAATGTATTTTCATTTAGGTTGCATCC-TTTTTGTTATATTTATCTGATGTGGAAGAAGGTGGAGAAACCATGTTCCCTTTCGAGGTGAGTTCAAAGTTGTTTCTTCTTTCGTGGACTATTATTATATTTCTGCCTCTCATGTCGTGTAAATAAGTCCTTTGGTTAATTTACAGAATGCACAGAATATGGATGTTAATTATGA</genome_strand>
        <mrna_strand>TCAGGAAGAAGATGAAGAGCAAAGGTAGATTCGTTGGACAAAGATGGTGGAGCATAAGGGGCTTACCTTCAGTATTTCTGCTATGTCTTTTCTTCTTCCTCGCCGGTTTATTCGGTTCTACTCTCATTTCTCATCAG......................................................................GATGTACAACTACTTACTGTACGGCCTAGGTCGAGGGTGCTTGAATCTGTGGAAGAATTTGATGTTTTGCCTAATGGCGACACTGGAGAACATTCCCTCACTTCCATCCCCTTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTAAGCTGGTTCCCACGTGCATTATACTTTCCCAATTTCGCAACTATAGAACAATGCCAAGGCATTATTAAGATGGCAAAGGCAGATCTGAAACCATCATCTTTGGCTCTCCGCAAAGGAGAAACAGCAGAGAATACCAAAGGAATTAGAACAAG............................................................................................................................................................................................................................................................................................................................................................................TTCTGGTATGTTTATCAGTGCATCTGAAGACAAAACTGGAATTCTGGACCTCATTGAGGAGAAAATCGCAAAGGCGACTATGATCCCCAGGACACACGGAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTTAATGTTTTGCGGTACGAAACCGGCCAGAGTTATCATTCGCATTATGATGCGTTTTGATCCTTCTCAATATGGTCCTCAGAAGAGCCAAAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCATCCTTTTTTGTTGTATTTATCTGATGTGGAAGAAGGTGGAGAAACCATGTTCCCTTTCGAG.........................................................................................AGTGCACAGAATATGGATGCTAATTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E474853" ref_strand="+" ref_description="SGN-E474853 [cSTB-38-M9]">
      <seq>atcgatttctccatcaggaagaagatgaagagcaaaggtagattagttggacaaagatggtggagcataaggggcttaccttcagtatttctgctatgtcttttcttcttcctcgccggtttattcggttctactctcatttctcatcaggatgtacaactacttactgtacggcctaagtcgagggtgcttgaatctgtggaagaatttgatgttttgcctaatggcgacactggagaacattccctcacttccatcccctttcaggtcttaagctggttcccacgtgcattatactttcccaatttcgcaactatagaacaatgccaaggcattattaagatggcaaaggcagatctgaaaccatcatctttggctctccgcaaaggagaaacagcagagaataccaaaggaattagaacaagttctggtatgtttatcagtgcatctgaagacaaaactggaattctggacctcattgaggagaaaatcgcaaaggcgactatgatccccaggacacacggagagctgtcacatggtgtagtctgtatgtattcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="41889" stop="38655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41589" g_stop="41440" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41439" i_stop="41370" i_length="70">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.637" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41369" g_stop="41253" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="267" r_length="117" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41252" i_stop="40366" i_length="887">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.949" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40365" g_stop="40208" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="425" r_length="158" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40207" i_stop="39844" i_length="364">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39843" g_stop="39741" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="528" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="39740" i_stop="38986" i_length="755">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38985" g_stop="38955" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="559" r_length="31" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E474853" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E474853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41589" e_stop="41440"/>
          <exon e_start="41369" e_stop="41253"/>
          <exon e_start="40365" e_stop="40208"/>
          <exon e_start="39843" e_stop="39741"/>
          <exon e_start="38985" e_stop="38955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGGATTCGCCATCAGGAAGAAGATGAAGAGCAAAGGTAGATTAGTGGGACAAAGATGGCGGAGCATAGGGGGCTTACCTTCAATATTTCTGCTATGTCTTTTCTTGTTCTTCGCCGGTTTATTCGGTTCTACTCTCGTTTCTCATCAGGTATTTCCCTTATTATTTGCTAGACGCCTCTGTCATATGCGTTTCTAATCAAAGTGTTTGGGTGTGATAGGATGTACAACTACTTACTGTACGGCCTAGGTCAAGGGTGCTTAAATCTGTGGAAGAATTTGATGTTTTGCCTAATGGCGACACTGGAGAACACTCCCTTACTTCCATCCCCTTCCAGGTATATTTCATTGCTCAGTTCTCCTTGCTGAATTAGCGCTGGTTCGATTTCAAGTCTAACCGTTTTTGTTTGAAAAATTGTTCATACTGTAGTTGAACTTACATTAGTCCGCCAAGCTTTTTAATTATTGTTTCGATGTTCTCCTGGATTTGCACTTTTGGTTGGTTGATATGCGGATTTTCTCATAGCTATTTTATTTTGATTATCAACCGTTGAGATTGTTGCCGCTGATGCAATAATATTACTTTTCTTAATGTTGAAGTAGCATAACTTGATTTTTTCGGTAAGTAAACCAGATAGATAATGGCACAGCCCATTTGAATTGGTTTAAAAGTCGAGCAAATTACTTATCAATTTTTGACAAAAATAAAAAATAATTTAAAATAACTGAAATTGACTTAAAATAAATCAAAAATGACTTGAAATAAGTGAAAAATAAATTAAGATAGGTCTTCCTTGCTTTTTATTTTTTTAACTTGTTAAGTCATTTCCGTTTGACTTTTTAATTTCAACTTAAATAACTATTTTTGTAAGCCAATTCAAACGTGTTCTAAGTAAGTTTAAGAACAAATATGCATACTCTAATTTCTCTTATTCTGCCACTTCATCTACACTTTCTGCTTATATTTCTATGATTCCTGTTTTTCTATGGTTGACTGGGGGAAGATTTGTGTGGAGGAAGCAGTGAAGTAGGCATGTCATTAAGTCTATAGGCAAAATAGCTGGTAGCTGTGACTGATCATGTTAGCTTCCTAAACATAAACCTAAGCTGGTAAAAATTTTGTTCATGGTACTCATTGACTATAAAGTCTAGTATCTCTGATTTGCATTAGTATTCATTTGTTTTGGTTTATCTTATTTGACATCGACTTCAATCTTTTGGGTAGGTCTTAAGCTGGTTCCCACGTGCATTATACTTTCCCAATTTCGCAACTACAGAACAATGCCAAGGCATAATTAAGATGGCAAAGGCAGAACTGAAACCATCATCTTTGGCTCTCCGCAAAGGAGAAACAGCAGAAAATACCAAAGGAGTTAGAACAAGGTAAACAATACTCTGGTGTTCTATGTGTCCTGACTGATGTTTTGTCATAAATGCAATCTTTTCACTCTTTCCAAGCATTAGATTTAACTCTTAATACACTCATACTTCCATAATATCTATTTCTAGTAGACAAGATAAATATGTCACCAAAATTGAGTGTGTTCACATACATTTTCTACTTTTTTGGAAGATAAAATTGTTCATGGTGTTTGAACTGGCCATATGTCTCTGTCCTTTTTCAGGTCATTTGTTTTATATTTCTTTGATCTGTTGTCAAGACTATTTGATAAAAGTTTGCTGCCTCTTTTGGTTTTGACATGAAGTTACAATTTGAATGACTTTTGCTTTTCCCCCTTTCCCACAGTTCTGGTATGTTTATCAGTGCATCTGAAGACAAAACTGGAATTCTGGACCTCATTGAGGAGAAAATCGCAAAGGCGACTATGATCCCCAGGACACACGGAGAGGTGAATTTCATTTAAAACACACATCTTAAATATGACGCATGAAGTGGTTCTTACTGTGTATTAGTTTTATCATTCCATCCACACCTCAGAAATTGGATCTCAATAGAGGACATAATAGTTGTATTATTGGTGGGGAATCATTTTCCCAAGCTTCTTCATTTCCTTCCTCTTCTTCATCTTCTATTTTCTTGAAAACTATGTTGATTCAAGCTCTGGTTCTACTTCTACAAAATGCTGGACAACTATATTAGTGATTTTAGGTTTCCACTAGCAAATGCATTCTTCCAATTGTTATCAACACTGAAGAAAACAAGTCTTTTGGTGTTGGAGGTAAATATTAACTGGTTGTACAATCACATTTTTTTTTACCAGATTTAAGGCCATATATGTCAAACACCAAACATATTTTGGTCTTCGTGTTCTTTTCACCTCATATCTGAAAATTTAAATGGGTATCTGCTGCGGAAAGATGGAATTGGTCTGCTTTTGTTTTTGGACAGATCAGTATGTGTTAGCAATGGCAAGATTAAATTGACACTACAATGATCATTGAATGGAAATGATATGATTATTTTTTGTCCGAATCATTCATACCGTACCAATATAGATTTTTGTCAAAGGTTTCACATGGAAATTTAACTTGAAAATCCTATATATATTTCCATTTGAAAGCTTTTTGTTCCAATTTTACTTATGCAAAAGAGCTCATTCGATGTAATTGACGGTTCGTTTCCTCTTCTATATGAACTATCCAGCTGTCACATGGTCTAGTCTGTATGTATTCTA</genome_strand>
        <mrna_strand>ATCGATTTCTCCATCAGGAAGAAGATGAAGAGCAAAGGTAGATTAGTTGGACAAAGATGGTGGAGCATAAGGGGCTTACCTTCAGTATTTCTGCTATGTCTTTTCTTCTTCCTCGCCGGTTTATTCGGTTCTACTCTCATTTCTCATCAG......................................................................GATGTACAACTACTTACTGTACGGCCTAAGTCGAGGGTGCTTGAATCTGTGGAAGAATTTGATGTTTTGCCTAATGGCGACACTGGAGAACATTCCCTCACTTCCATCCCCTTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTAAGCTGGTTCCCACGTGCATTATACTTTCCCAATTTCGCAACTATAGAACAATGCCAAGGCATTATTAAGATGGCAAAGGCAGATCTGAAACCATCATCTTTGGCTCTCCGCAAAGGAGAAACAGCAGAGAATACCAAAGGAATTAGAACAAG............................................................................................................................................................................................................................................................................................................................................................................TTCTGGTATGTTTATCAGTGCATCTGAAGACAAAACTGGAATTCTGGACCTCATTGAGGAGAAAATCGCAAAGGCGACTATGATCCCCAGGACACACGGAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCACATGGTGTAGTCTGTATGTATTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E441740" ref_strand="+" ref_description="SGN-E441740 [cSTA-31-A18]">
      <seq>tcaggaagaagatgaagagcaaaggtagattcgttggacaaagatggtggagcataaggggcttaccttcagtatttctgctatgtcttttcttcttcctcgccggtttattcggttctactctcatttctcatcaggatgtacaactacttactgtacggcctaggtcgagggtgcttgaatctgtggaagaatttgatgttttgcctaatggcgacactggagaacattccctcacttccatcccctttcaggtcttaagctggttcccacgtgcattatactttcccaatttcgcaactatagaacaatgccaaggcattattaatatggcaaaggcagatctgaaaccatcatctttggctctccgcaaaggagaaacagcagagaataccaaaggaattagaacaagttgtggtatgtttatcagtgcatctgaagacaaaactggaattctggacctcattgaggaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="41876" stop="39482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41576" g_stop="41440" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41439" i_stop="41370" i_length="70">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.637" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41369" g_stop="41253" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="254" r_length="117" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41252" i_stop="40366" i_length="887">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.949" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40365" g_stop="40208" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="412" r_length="158" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40207" i_stop="39844" i_length="364">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.967" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39843" g_stop="39782" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="474" r_length="62" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E441740" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E441740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41576" e_stop="41440"/>
          <exon e_start="41369" e_stop="41253"/>
          <exon e_start="40365" e_stop="40208"/>
          <exon e_start="39843" e_stop="39782"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGAAGAAGATGAAGAGCAAAGGTAGATTAGTGGGACAAAGATGGCGGAGCATAGGGGGCTTACCTTCAATATTTCTGCTATGTCTTTTCTTGTTCTTCGCCGGTTTATTCGGTTCTACTCTCGTTTCTCATCAGGTATTTCCCTTATTATTTGCTAGACGCCTCTGTCATATGCGTTTCTAATCAAAGTGTTTGGGTGTGATAGGATGTACAACTACTTACTGTACGGCCTAGGTCAAGGGTGCTTAAATCTGTGGAAGAATTTGATGTTTTGCCTAATGGCGACACTGGAGAACACTCCCTTACTTCCATCCCCTTCCAGGTATATTTCATTGCTCAGTTCTCCTTGCTGAATTAGCGCTGGTTCGATTTCAAGTCTAACCGTTTTTGTTTGAAAAATTGTTCATACTGTAGTTGAACTTACATTAGTCCGCCAAGCTTTTTAATTATTGTTTCGATGTTCTCCTGGATTTGCACTTTTGGTTGGTTGATATGCGGATTTTCTCATAGCTATTTTATTTTGATTATCAACCGTTGAGATTGTTGCCGCTGATGCAATAATATTACTTTTCTTAATGTTGAAGTAGCATAACTTGATTTTTTCGGTAAGTAAACCAGATAGATAATGGCACAGCCCATTTGAATTGGTTTAAAAGTCGAGCAAATTACTTATCAATTTTTGACAAAAATAAAAAATAATTTAAAATAACTGAAATTGACTTAAAATAAATCAAAAATGACTTGAAATAAGTGAAAAATAAATTAAGATAGGTCTTCCTTGCTTTTTATTTTTTTAACTTGTTAAGTCATTTCCGTTTGACTTTTTAATTTCAACTTAAATAACTATTTTTGTAAGCCAATTCAAACGTGTTCTAAGTAAGTTTAAGAACAAATATGCATACTCTAATTTCTCTTATTCTGCCACTTCATCTACACTTTCTGCTTATATTTCTATGATTCCTGTTTTTCTATGGTTGACTGGGGGAAGATTTGTGTGGAGGAAGCAGTGAAGTAGGCATGTCATTAAGTCTATAGGCAAAATAGCTGGTAGCTGTGACTGATCATGTTAGCTTCCTAAACATAAACCTAAGCTGGTAAAAATTTTGTTCATGGTACTCATTGACTATAAAGTCTAGTATCTCTGATTTGCATTAGTATTCATTTGTTTTGGTTTATCTTATTTGACATCGACTTCAATCTTTTGGGTAGGTCTTAAGCTGGTTCCCACGTGCATTATACTTTCCCAATTTCGCAACTACAGAACAATGCCAAGGCATAATTAAGATGGCAAAGGCAGAACTGAAACCATCATCTTTGGCTCTCCGCAAAGGAGAAACAGCAGAAAATACCAAAGGAGTTAGAACAAGGTAAACAATACTCTGGTGTTCTATGTGTCCTGACTGATGTTTTGTCATAAATGCAATCTTTTCACTCTTTCCAAGCATTAGATTTAACTCTTAATACACTCATACTTCCATAATATCTATTTCTAGTAGACAAGATAAATATGTCACCAAAATTGAGTGTGTTCACATACATTTTCTACTTTTTTGGAAGATAAAATTGTTCATGGTGTTTGAACTGGCCATATGTCTCTGTCCTTTTTCAGGTCATTTGTTTTATATTTCTTTGATCTGTTGTCAAGACTATTTGATAAAAGTTTGCTGCCTCTTTTGGTTTTGACATGAAGTTACAATTTGAATGACTTTTGCTTTTCCCCCTTTCCCACAGTTCTGGTATGTTTATCAGTGCATCTGAAGACAAAACTGGAATTCTGGACCTCATTGAGGAGA</genome_strand>
        <mrna_strand>TCAGGAAGAAGATGAAGAGCAAAGGTAGATTCGTTGGACAAAGATGGTGGAGCATAAGGGGCTTACCTTCAGTATTTCTGCTATGTCTTTTCTTCTTCCTCGCCGGTTTATTCGGTTCTACTCTCATTTCTCATCAG......................................................................GATGTACAACTACTTACTGTACGGCCTAGGTCGAGGGTGCTTGAATCTGTGGAAGAATTTGATGTTTTGCCTAATGGCGACACTGGAGAACATTCCCTCACTTCCATCCCCTTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTAAGCTGGTTCCCACGTGCATTATACTTTCCCAATTTCGCAACTATAGAACAATGCCAAGGCATTATTAATATGGCAAAGGCAGATCTGAAACCATCATCTTTGGCTCTCCGCAAAGGAGAAACAGCAGAGAATACCAAAGGAATTAGAACAAG............................................................................................................................................................................................................................................................................................................................................................................TTGTGGTATGTTTATCAGTGCATCTGAAGACAAAACTGGAATTCTGGACCTCATTGAGGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E299176" ref_strand="+" ref_description="SGN-E299176 [cLET-42-J8]">
      <seq>aattctccatcacgtatgatgcatggtcaaaaaaaaaaaagaacttctatctagctactttttcttctgaattctatggttgcaagaaaattcacaaatgctaaggctaaatttatatggctccatagtttctagtccgatagaagtcaacaaaagctgccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaagatgggatgaacggtggcacgaatggcagtggattaggtggtcgtagttgggacccaggcttggaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcagaactgggtccaggggccttcttcctacgtctcggaggactttggttagtcactttcgcagttttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagatttctcctggctgcaagtacggggactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="46973" stop="48799"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47273" g_stop="47597" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47598" i_stop="48082" i_length="485">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.115" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48083" g_stop="48235" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="478" r_length="153" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48236" i_stop="48411" i_length="176">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48412" g_stop="48489" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="556" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48490" i_stop="48657" i_length="168">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48658" g_stop="48669" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="568" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E299176" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47273" e_stop="47597"/>
          <exon e_start="48083" e_stop="48235"/>
          <exon e_start="48412" e_stop="48489"/>
          <exon e_start="48658" e_stop="48669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTCCATCACGTATGATGCATGGTCAAAAAAAAAAAAGAACTTCTATCTAGCTACTTTTTCTTCTGAATTCTATGGTTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTAT</genome_strand>
        <mrna_strand>AATTCTCCATCACGTATGATGCATGGTCAAAAAAAAAAAAGAACTTCTATCTAGCTACTTTTTCTTCTGAATTCTATGGTTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGAGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730712" ref_strand="+" ref_description="SGN-E730712 [LA24DH01]">
      <seq>ccgttgcatggtcaaaaaaaaaaaaaaacttctatcaacctactttttcttcggaattctatggttgcaaaaaaattcacaaatgctaaggctaaatttatatggctccatagtttctagcccaataaaagtcaacaaaagctgccgctcggggatctttttatcaaacaaagcaacaattgtatgtcggaggaactttcaagttaaacccctgaaaaatgggatgaacgggggcacaaatggcaggggattagggggccgaatttggaacccaggcttgaaaattgaggggccttttgaacaaaggccggggaatgagtactcttctctgaaaaatgaaactttatactcttgggcaaaactgggtccaggggccttcttcctacgtctcgggggactttggttagtcactttcccagttttgggagaacctattgctgctgcaagcttcaatccttcaaaggatcctttaaaatttctcctggctgcaagaacgggaactctttttcttgttgcactgattgccctaaaaatttatctgggatggacctatgttggaaataggcttttatcaccagttataccttatgaaaaaactgaatggtatgatgggcagatgtgggtgaaccccccaaaaatcttacctcggaataggctgttgggatcttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="46990" stop="49926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47288" g_stop="47597" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.903"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47598" i_stop="48082" i_length="485">
            <donor d_prob="0.996" d_score="0.88"/>
            <acceptor a_prob="0.115" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48083" g_stop="48235" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="463" r_length="153" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48236" i_stop="48411" i_length="176">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.849" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48412" g_stop="48489" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="541" r_length="78" r_score="0.936"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48490" i_stop="48657" i_length="168">
            <donor d_prob="0.831" d_score="0.92"/>
            <acceptor a_prob="0.341" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48658" g_stop="48753" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="637" r_length="96" r_score="0.906"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48754" i_stop="49592" i_length="839">
            <donor d_prob="0.990" d_score="0.88"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49593" g_stop="49626" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="671" r_length="34" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E730712" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730712" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47288" e_stop="47597"/>
          <exon e_start="48083" e_stop="48235"/>
          <exon e_start="48412" e_stop="48489"/>
          <exon e_start="48658" e_stop="48753"/>
          <exon e_start="49593" e_stop="49626"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATGCATGGTCAAAAAAAAAAAAGAACTTCTATCTAGCTACTTTTTCTTCTGAATTCTATGGTTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAGGTTAGTGGTCTTTCCTTTGCATACTTATTTAACAGGTTCTTTCTCTTTGCTTCCTCTGTTCCTCCTCATTCCCACAGTAGGAAAATATTGCCAGCTTCAAAATGGATAAATTAGCTTCAATCCAGTTCACTAAAATAGGTCATTTATACTAGTTACATCAAGCACATCTAAGTAAAGTAAGTCAAGTTGAACTCTTTTGTTAAAAAAAGAAGGTTAACAATATGAACTTTAATCATTGACAAACTGAATCTAACAAGTGCTCATGGATATGAAGAATACATAGCTAGCAACAAGGGGGAAATGGTGTAATATTGCTTGACAAGAATTGTATCACATAATAGATAAGAGCAAGCGCCCAGAGCCCTAACGACTAACAGTGAGGTGAAAATGGTCCAATATAGCATGAAATGGACTTAAAATTTGGTATCACAAATAAAACGCGGGAAATGAAGCTACATGTGAAAGCAATAAGTTGTACTTCCTTGTGTTGGTTAAATCATCAGTCCTTGCACAATACCCTTTTCTTCTTAGCACAAACAGCTATACTAAAGATTTCAATAAAATAGGTTCTTACTTTTCATGGTATAGAAATGTAGTTATCTTTCCGTGAAACTTTGAGCAACAGATCTTCTAGAAAGTAATAGCATTATCTTTTACAATAACACTACATGATGGAACAACGTCTATACATGAAGCTAATATTAGTTCCGCACTTGTAATAATTCATGCTCTAAAAGTCTATAGCCACCTGCACTTCTTGAAAAATTTATCAGAATCCAAGCTCTAAAAGTCTGTAATGATGTTGCACGTATGACATTTAATGTGATTATTCCTTGCAGATCTTAGCTCGGGATAGGCTGTTGGGATCTTATA</genome_strand>
        <mrna_strand>CCGTTGCATGGTCAAAAAAAAAAAAAAACTTCTATCAACCTACTTTTTCTTCGGAATTCTATGGTTGCAAAAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGCCCAATAAAAGTCAACAAAAGCTGCCGCTCGGGGATCTTTTTATCAAACAAAGCAACAATTGTATGTCGGAGGAACTTTCAAGTTAAACCCCTGAAAAATGGGATGAACGGGGGCACAAATGGCAGGGGATTAGGGGGCCGAATTTGGAACCCAGGCTTGAAAATTGAGGGGCCTTTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAATGAGTACTCTTCTCTGAAAAATGAAACTTTATACTCTTGGGCAAAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCCCAGTTTTGGGAGAACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAAATTTCTCCTGGCTGCAAGAACGGGAACTCTTTTTCTTGTTGCACTGATTGCCCTAAAAATTTATCTG........................................................................................................................................................................GGATGGACCTATGTTGGAAATAGGCTTTTATCACCAGTTATACCTTATGAAAAAACTGAATGGTATGATGGGCAGATGTGGGTGAACCCCCCAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTACCTCGGAATAGGCTGTTGGGATCTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725778" ref_strand="+" ref_description="SGN-E725778 [LA05CF06]">
      <seq>catggtcaaaaaaaaaaaaaaacttctatctagctactttttcttctgaattctatggttgcaaaaaaattcacaaatgctaaggctaaatttatatggctccatagtttctagtccgataaaagtcaacaaaagctgccgctcggggatcattttatcgaacaaagcaccgatggtttgtcggaggaacattcgagttaaagccctgaaagatgggataaacggtggcacaaatggcaggggattaggtggtcgtagttgggacccaggcttgaaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcagaactgggtccaggggccttcttcctacgtctggggggactttggttagtcactttcgcagttttgggagtacctatggctgctgcaagcttcaatccttcaaaggatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="46994" stop="48536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47294" g_stop="47597" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47598" i_stop="48082" i_length="485">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.115" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48083" g_stop="48235" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="457" r_length="153" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48236" i_stop="48411" i_length="176">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.849" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48412" g_stop="48417" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="463" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E725778" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47294" e_stop="47597"/>
          <exon e_start="48083" e_stop="48235"/>
          <exon e_start="48412" e_stop="48417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGTCAAAAAAAAAAAAGAACTTCTATCTAGCTACTTTTTCTTCTGAATTCTATGGTTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCT</genome_strand>
        <mrna_strand>CATGGTCAAAAAAAAAAAAAAACTTCTATCTAGCTACTTTTTCTTCTGAATTCTATGGTTGCAAAAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAAAAGTCAACAAAAGCTGCCGCTCGGGGATCATTTTATCGAACAAAGCACCGATGGTTTGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATAAACGGTGGCACAAATGGCAGGGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGAAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTGGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATGGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735756" ref_strand="+" ref_description="SGN-E735756 [LC02DE11]">
      <seq>cggtcaaaaaaaaaaaaaaacttctatctagctactttttcttctgaattctatggttgcaaaaaaattcacaaatgctaaggctaaatttatatggctccatagtttctagtccgataaaagtcaacaaaagctgccgctcggggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcaagttaaagccctgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="46997" stop="47804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47296" g_stop="47505" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E735756" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>210</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47296" e_stop="47505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTCAAAAAAAAAAAAGAACTTCTATCTAGCTACTTTTTCTTCTGAATTCTATGGTTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAG</genome_strand>
        <mrna_strand>CGGTCAAAAAAAAAAAAAAACTTCTATCTAGCTACTTTTTCTTCTGAATTCTATGGTTGCAAAAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAAAAGTCAACAAAAGCTGCCGCTCGGGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCAAGTTAAAGCCCTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735838" ref_strand="+" ref_description="SGN-E735838 [LC03BD04]">
      <seq>cggtcaaaaaaaaaagaacttctatctagctactttttcttctgaattctatggttgcaagaaaattcacaaatgctaaggctaaatttatatggctccatagtttctagtccgataaaagtcaacaaaagctgccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcaagttaaagccctgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="47003" stop="47804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47296" g_stop="47504" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E735838" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>209</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47296" e_stop="47504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTCAAAAAAAAAAAAGAACTTCTATCTAGCTACTTTTTCTTCTGAATTCTATGGTTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAA</genome_strand>
        <mrna_strand>CGGTCAAAA-AAAA-AAGAACTTCTATCTAGCTACTTTTTCTTCTGAATTCTATGGTTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAAAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCAAGTTAAAGCCCTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735350" ref_strand="+" ref_description="SGN-E735350 [LC01AF10]">
      <seq>cgtttaaaaaaaaaaaaacttctatctagctactttttcttctgaattctatggttgcaaaaaaattcacaaatgctaaggctaaatttatatggctccatagtttctagtccgataaaagtcaacaaaagctgccgctcgtggatcattttatcaaacaaagcaacaattgtatgtcggaggaacattcaagttaaagccctgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="46998" stop="47804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47297" g_stop="47505" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E735350" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>209</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47297" e_stop="47505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCAAAAAAAAAAAAGAACTTCTATCTAGCTACTTTTTCTTCTGAATTCTATGGTTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAG</genome_strand>
        <mrna_strand>CGTTTAAAAAAAAAAA-AACTTCTATCTAGCTACTTTTTCTTCTGAATTCTATGGTTGCAAAAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAAAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCAAACAAAGCAACAATTGTATGTCGGAGGAACATTCAAGTTAAAGCCCTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E739164" ref_strand="+" ref_description="SGN-E739164 [LC16BE08]">
      <seq>cgttaaaaaaaaaaagaacttctatctagctactttttcttctgaattctatggttgcaagaaaattcacaaatgctaaggctaaatttatatggctccatagtttctagtccgatagaagtcaacaaaagctgccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="47002" stop="47804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47297" g_stop="47504" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E739164" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>208</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47297" e_stop="47504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCAAAAAAAAAAAAGAACTTCTATCTAGCTACTTTTTCTTCTGAATTCTATGGTTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAA</genome_strand>
        <mrna_strand>CGTTAA-AAAAAAAAAGAACTTCTATCTAGCTACTTTTTCTTCTGAATTCTATGGTTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E327449" ref_strand="+" ref_description="SGN-E327449 [cTOC-19-H7]">
      <seq>tcaaaaaaaaaaaaagaacttctatctagctactttttcttctgaattctatggttgcaagaaaattcacaaatgctaaggctaaatttatatggctccatagtttctagtccgatagaagtcaacaaaagctgccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaagatgggatgaacggtggcacgaatggcagtggattaggtggtcgtagttgggacccaggcttggaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcagaactgggtccaggggccttcttcctacgtctcgggggactttggttagtcactttcgcagttttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagatttctcctggctgcaagtacggggactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctatgttggagataggcttttatcagcagttataccttatgaagagactggatggtatgatgggcagatgtgggtgaagcccccagagatcttagctcgggataggctgttgggatcttataaggtgaaaccagtcattaaaatgctgaagcaaacgctagttggaacaggggctttgcttgttgcagcagtctcattattcatatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="46998" stop="50126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47299" g_stop="47597" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47598" i_stop="48082" i_length="485">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.115" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48083" g_stop="48235" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="453" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48236" i_stop="48411" i_length="176">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48412" g_stop="48489" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="531" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48490" i_stop="48657" i_length="168">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48658" g_stop="48753" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="627" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48754" i_stop="49592" i_length="839">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49593" g_stop="49628" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="663" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49629" i_stop="49741" i_length="113">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.334" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49742" g_stop="49826" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="748" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E327449" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47299" e_stop="47597"/>
          <exon e_start="48083" e_stop="48235"/>
          <exon e_start="48412" e_stop="48489"/>
          <exon e_start="48658" e_stop="48753"/>
          <exon e_start="49593" e_stop="49628"/>
          <exon e_start="49742" e_stop="49826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TC-AAAAAAAAAAAAGAACTTCTATCTAGCTACTTTTTCTTCTGAATTCTATGGTTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAGGTTAGTGGTCTTTCCTTTGCATACTTATTTAACAGGTTCTTTCTCTTTGCTTCCTCTGTTCCTCCTCATTCCCACAGTAGGAAAATATTGCCAGCTTCAAAATGGATAAATTAGCTTCAATCCAGTTCACTAAAATAGGTCATTTATACTAGTTACATCAAGCACATCTAAGTAAAGTAAGTCAAGTTGAACTCTTTTGTTAAAAAAAGAAGGTTAACAATATGAACTTTAATCATTGACAAACTGAATCTAACAAGTGCTCATGGATATGAAGAATACATAGCTAGCAACAAGGGGGAAATGGTGTAATATTGCTTGACAAGAATTGTATCACATAATAGATAAGAGCAAGCGCCCAGAGCCCTAACGACTAACAGTGAGGTGAAAATGGTCCAATATAGCATGAAATGGACTTAAAATTTGGTATCACAAATAAAACGCGGGAAATGAAGCTACATGTGAAAGCAATAAGTTGTACTTCCTTGTGTTGGTTAAATCATCAGTCCTTGCACAATACCCTTTTCTTCTTAGCACAAACAGCTATACTAAAGATTTCAATAAAATAGGTTCTTACTTTTCATGGTATAGAAATGTAGTTATCTTTCCGTGAAACTTTGAGCAACAGATCTTCTAGAAAGTAATAGCATTATCTTTTACAATAACACTACATGATGGAACAACGTCTATACATGAAGCTAATATTAGTTCCGCACTTGTAATAATTCATGCTCTAAAAGTCTATAGCCACCTGCACTTCTTGAAAAATTTATCAGAATCCAAGCTCTAAAAGTCTGTAATGATGTTGCACGTATGACATTTAATGTGATTATTCCTTGCAGATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAGGTACCAGATTGATCTATAAAATTCATCAGCTGGTTACATCATATTCTAACTGTCAATAGAGTAGATCTTTCCTATTACGAGCTTGACAAAGCTGAAAGAATTTATTTACCTAGGTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTG</genome_strand>
        <mrna_strand>TCAAAAAAAAAAAAAGAACTTCTATCTAGCTACTTTTTCTTCTGAATTCTATGGTTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAG.................................................................................................................GTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735378" ref_strand="+" ref_description="SGN-E735378 [LC01BD04]">
      <seq>gtcaaaaaaaaaagaacttctatctagctactttttcttctgaattctatggttgcaagaaaattcacaaatgctaaggctaaatttatatggctccatagtttctagtccgatagaagtcaacaaaagctgccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="47003" stop="47804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47300" g_stop="47504" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E735378" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>205</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47300" e_stop="47504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAAAAAAAAGAACTTCTATCTAGCTACTTTTTCTTCTGAATTCTATGGTTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAA</genome_strand>
        <mrna_strand>GTCAAAAAAAAAAGAACTTCTATCTAGCTACTTTTTCTTCTGAATTCTATGGTTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E252133" ref_strand="+" ref_description="SGN-E252133 [cLEG-8-G4]">
      <seq>aaaaagaacttctatctagctactttttcttctgaattctatggttgcaagaaaattcacaaatgctaaggctaaatttatatggctccatagtttctagtccgatagaagtcaacaaaagctgccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaagatgggatgaacggtggcacgaatggcagtggattaggtggtcgtagttgggacccaggcttggaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcagaactgggtccaggggccttcttcctacgtctcgggggactttggttagtcactttcgcagttttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagatttctcctggctgcaagtacggggactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctatgttggagataggcttttatcagcagttataccttatgaagagactggatggtatgatgggcagatgtgggtgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="47008" stop="49044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47308" g_stop="47597" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47598" i_stop="48082" i_length="485">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.115" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48083" g_stop="48235" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="443" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48236" i_stop="48411" i_length="176">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48412" g_stop="48489" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="521" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48490" i_stop="48657" i_length="168">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48658" g_stop="48744" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="608" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E252133" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47308" e_stop="47597"/>
          <exon e_start="48083" e_stop="48235"/>
          <exon e_start="48412" e_stop="48489"/>
          <exon e_start="48658" e_stop="48744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGAACTTCTATCTAGCTACTTTTTCTTCTGAATTCTATGGTTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAG</genome_strand>
        <mrna_strand>AAAAAGAACTTCTATCTAGCTACTTTTTCTTCTGAATTCTATGGTTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E468893" ref_strand="+" ref_description="SGN-E468893 [cSTB-6-J15]">
      <seq>actttttcttctgaattctatggttgcaagaaaattcacaaatgctaaggctaaattcttatggctccatagtttctagtccgatagaagtcaatagaagctgccgctcgtggatcattttgtcgaacaaagcaacgattgtatgtcggaggaacattagagttaaagccctgaaagatgggatgaatggtggcaccaacggcagtggattaggtggtcgtagttgggaccctggcttggaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcggaattgggtccaggggccttcttcctacgtctcggaggactttggttaattacttttgcagttttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagatttctcctggctgcaagtacagggactctttttcttgttgcactgattgtcctaagaatttatctgggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="47029" stop="48792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47329" g_stop="47597" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47598" i_stop="48082" i_length="485">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.115" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48083" g_stop="48235" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="422" r_length="153" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48236" i_stop="48411" i_length="176">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.849" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48412" g_stop="48489" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="500" r_length="78" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E468893" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E468893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47329" e_stop="47597"/>
          <exon e_start="48083" e_stop="48235"/>
          <exon e_start="48412" e_stop="48489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTTTCTTCTGAATTCTATGGTTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG</genome_strand>
        <mrna_strand>ACTTTTTCTTCTGAATTCTATGGTTGCAAGAAAATTCACAAATGCTAAGGCTAAATTCTTATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAATAGAAGCTGCCGCTCGTGGATCATTTTGTCGAACAAAGCAACGATTGTATGTCGGAGGAACATTAGAGTTAAAGCCCTGAAAGATGGGATGAATGGTGGCACCAACGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCTGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCGGAATTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGAGGACTTTGGTTAATTACTTTTGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGATTTCTCCTGGCTGCAAGTACAGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E302916" ref_strand="+" ref_description="SGN-E302916 [cLEW-26-K10]">
      <seq>tttttcttctgaattctatggttgcaagaaaattcacaaatgctaaggctaaatttatatggctccatagtttctagtccgatagaagtcaacaaaagctgccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaagatgggatgaacggtggcacgaatggcagtggattaggtggtcgtagttgggacccaggcttggaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcagaactgggtccaggggccttcttcctacgtctcgggggactttggttagtcactttcgcagttttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagatttctcctggctgcaagtacggggactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctatgttggagataggcttttatcagcagttataccttatgaagagactggatggtatgatgggcagatgtgggtgaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="47031" stop="49045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47331" g_stop="47597" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47598" i_stop="48082" i_length="485">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.115" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48083" g_stop="48235" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="420" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48236" i_stop="48411" i_length="176">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48412" g_stop="48489" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="498" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48490" i_stop="48657" i_length="168">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48658" g_stop="48745" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="586" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E302916" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47331" e_stop="47597"/>
          <exon e_start="48083" e_stop="48235"/>
          <exon e_start="48412" e_stop="48489"/>
          <exon e_start="48658" e_stop="48745"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTTCTGAATTCTATGGTTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGC</genome_strand>
        <mrna_strand>TTTTTCTTCTGAATTCTATGGTTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E259441" ref_strand="+" ref_description="SGN-E259441 [cLEG-42-A23]">
      <seq>ttgcaagaaaattcacaaatgcttaggctaaatttatatggctccatagtttcgaggccgatagaagtcaacaaaagctgccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaagatgggatgaacggtggcacgaatggcagtggattaggtggtcgtagttgggacccaggcttggaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcagaactgggtccaggggccttcttcctacgtctcgggggactttggttagtcactttcgcagttttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagatttctcctggctgcaagtacggggactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctatgttggagataggcttttatcagcagttataccttatgaagagactggatggtatgatgggcagatgtgggtgaagccccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="47052" stop="49049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47352" g_stop="47597" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47598" i_stop="48082" i_length="485">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.115" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48083" g_stop="48235" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="399" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48236" i_stop="48411" i_length="176">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48412" g_stop="48489" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="477" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48490" i_stop="48657" i_length="168">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48658" g_stop="48749" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="569" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E259441" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47352" e_stop="47597"/>
          <exon e_start="48083" e_stop="48235"/>
          <exon e_start="48412" e_stop="48489"/>
          <exon e_start="48658" e_stop="48749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCC</genome_strand>
        <mrna_strand>TTGCAAGAAAATTCACAAATGCTTAGGCTAAATTTATATGGCTCCATAGTTTCGAGGCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E255109" ref_strand="+" ref_description="SGN-E255109 [cLEG-31-F20]">
      <seq>ttgcaagaaaattcacaaatgcttaggctaaatttatatggctccatagtttctagtccgatagaagtcaacaaaagctgccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaagatgggatgaacggtggcacagaatagggnnccagtggattaagtggtcgtagttgggacccaggcttggaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcagaactgggtccaggggccttcttcctacgtctcgggggactttggttagtcactttcgcagatttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagatttctcctggctgcaagtacggggactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctatgttggagataggcttttatcagcagttataccttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="47052" stop="49005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47352" g_stop="47597" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47598" i_stop="48082" i_length="485">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.115" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48083" g_stop="48235" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="405" r_length="153" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48236" i_stop="48411" i_length="176">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48412" g_stop="48489" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="483" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48490" i_stop="48657" i_length="168">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48658" g_stop="48705" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="531" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E255109" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47352" e_stop="47597"/>
          <exon e_start="48083" e_stop="48235"/>
          <exon e_start="48412" e_stop="48489"/>
          <exon e_start="48658" e_stop="48705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCAC-GAAT--GG---CAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTAT</genome_strand>
        <mrna_strand>TTGCAAGAAAATTCACAAATGCTTAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACAGAATAGGGNNCCAGTGGATTAAGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGATTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E368226" ref_strand="+" ref_description="SGN-E368226 [TUS-26-I14]">
      <seq>ttgcaagaaaattcacaaatgctaaggctaaatttatatggctccatagtttctagtccgatagaagtcaacaaaagctgccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaagatgggatgaacggaggcacgaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="47052" stop="47830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47352" g_stop="47530" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E368226" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>179</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47352" e_stop="47530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGG</genome_strand>
        <mrna_strand>TTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGAGGCACGAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726018" ref_strand="+" ref_description="SGN-E726018 [LA10AC02]">
      <seq>gagggaaaattcacaaatgctaaggctaaatttatatggctccatagtttctagtccgatagaagtcaacaaaagctgccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaagatgggatgaacggtggcacgaatggcagtggattaggtggtcgtagttgggacccaggcttggaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcagaactgggtccaggggccttcttcctacgtctcgggggactttggttagtcactttcgcagttttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagatttctcctggctgcaagtacggngactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctatgttggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="47058" stop="48976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47354" g_stop="47597" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47598" i_stop="48082" i_length="485">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.115" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48083" g_stop="48235" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="397" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48236" i_stop="48411" i_length="176">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48412" g_stop="48489" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="475" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48490" i_stop="48657" i_length="168">
            <donor d_prob="0.831" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48658" g_stop="48676" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="494" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E726018" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47354" e_stop="47597"/>
          <exon e_start="48083" e_stop="48235"/>
          <exon e_start="48412" e_stop="48489"/>
          <exon e_start="48658" e_stop="48676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAG</genome_strand>
        <mrna_strand>GAGGGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGNGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E740443" ref_strand="+" ref_description="SGN-E740443 [LC21BH02]">
      <seq>ccgataattcacaaatgctaaggctaaatttatatggctccatagtttctagtccgatagaagtcaacaaaagctgccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaagatgggatgaacggtggcacgaatggcagtggattaggtggtcgtagttgggacccaggcttggaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcagaactgggtccaggggccttcttcctacgtctcgggggactttggttagtcactttcgcagttttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagatttctcctggctgcaagtacggggactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctatgttggagataggcttttatcagcagttataccttatgaagagactggatggtatgatgggcagatgtgggtgaagcccccagagatcttagctcgggataggctgttgggatcttataaggtgaaaccagtcattaaaatgctgaagcaaacgctagttggaacaggggctttgcttgttgcagcagtctcattattcatatttgcaacaccagtagaagattttttccgcaatactttcacaacaaacgagaactcattgagttccacctcaacaaacagcacaaataaactaggcatcaggaaagaagaactgttgcgcttgccactggaagtcaaggaggacgatgatctagcaaaagctgccgctgaagcagctgatgggaggccagtttactgcagagataggtattatcgtgcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="47058" stop="50420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47356" g_stop="47597" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47598" i_stop="48082" i_length="485">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.115" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48083" g_stop="48235" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="395" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48236" i_stop="48411" i_length="176">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48412" g_stop="48489" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="473" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48490" i_stop="48657" i_length="168">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48658" g_stop="48753" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="569" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48754" i_stop="49592" i_length="839">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49593" g_stop="49628" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="605" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49629" i_stop="49741" i_length="113">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.334" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49742" g_stop="49923" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="787" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="49924" i_stop="50000" i_length="77">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="50001" g_stop="50120" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="788" r_stop="907" r_length="120" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E740443" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>907</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47356" e_stop="47597"/>
          <exon e_start="48083" e_stop="48235"/>
          <exon e_start="48412" e_stop="48489"/>
          <exon e_start="48658" e_stop="48753"/>
          <exon e_start="49593" e_stop="49628"/>
          <exon e_start="49742" e_stop="49923"/>
          <exon e_start="50001" e_stop="50120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAGGTTAGTGGTCTTTCCTTTGCATACTTATTTAACAGGTTCTTTCTCTTTGCTTCCTCTGTTCCTCCTCATTCCCACAGTAGGAAAATATTGCCAGCTTCAAAATGGATAAATTAGCTTCAATCCAGTTCACTAAAATAGGTCATTTATACTAGTTACATCAAGCACATCTAAGTAAAGTAAGTCAAGTTGAACTCTTTTGTTAAAAAAAGAAGGTTAACAATATGAACTTTAATCATTGACAAACTGAATCTAACAAGTGCTCATGGATATGAAGAATACATAGCTAGCAACAAGGGGGAAATGGTGTAATATTGCTTGACAAGAATTGTATCACATAATAGATAAGAGCAAGCGCCCAGAGCCCTAACGACTAACAGTGAGGTGAAAATGGTCCAATATAGCATGAAATGGACTTAAAATTTGGTATCACAAATAAAACGCGGGAAATGAAGCTACATGTGAAAGCAATAAGTTGTACTTCCTTGTGTTGGTTAAATCATCAGTCCTTGCACAATACCCTTTTCTTCTTAGCACAAACAGCTATACTAAAGATTTCAATAAAATAGGTTCTTACTTTTCATGGTATAGAAATGTAGTTATCTTTCCGTGAAACTTTGAGCAACAGATCTTCTAGAAAGTAATAGCATTATCTTTTACAATAACACTACATGATGGAACAACGTCTATACATGAAGCTAATATTAGTTCCGCACTTGTAATAATTCATGCTCTAAAAGTCTATAGCCACCTGCACTTCTTGAAAAATTTATCAGAATCCAAGCTCTAAAAGTCTGTAATGATGTTGCACGTATGACATTTAATGTGATTATTCCTTGCAGATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAGGTACCAGATTGATCTATAAAATTCATCAGCTGGTTACATCATATTCTAACTGTCAATAGAGTAGATCTTTCCTATTACGAGCTTGACAAAGCTGAAAGAATTTATTTACCTAGGTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAGGTAATTCTATTGAAAACTTAAGAAGTACAATACTATAAAATTTCATGAGCTTACGTTGTTTCGCTATGTAATTAAAGGAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGAAGGCCAGTTTACTGCAGAGATAGGTATTATCGTGCATT</genome_strand>
        <mrna_strand>CCGATAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAG.................................................................................................................GTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAG.............................................................................GAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGGAGGCCAGTTTACTGCAGAGATAGGTATTATCGTGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E740389" ref_strand="+" ref_description="SGN-E740389 [LC21AH04]">
      <seq>cgataattcacaaatgctaaggctaaatttatatggctccatagtttctagtccgatagaagtcaacaaaagctgccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaagatgggatgaacggtggcacgaatggcagtggattaggtggtcgtagttgggacccaggcttggaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcagaactgggtccaggggccttcttcctacgtctcgggggactttggttagtcactttcgcagttttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagatttctcctggctgcaagtacggggactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctatgttggagataggcttttatcagcagttataccttatgaagagactggatggtatgatgggcagatgtgggtgaagcccccagagatcttagctcgggataggctgttgggatcttataaggtgaaaccagtcattaaaatgctgaagcaaacgctagttggaacaggggctttgcttgttgcagcagtctcattattcatatttgcaacaccagtagaagattttttccgcaatactttcacaacaaacgagaactcattgagttccacctcaacaaacagcacaaataaactaggcatcaggaaagaagaactgttgcgcttgccactggaagtcaggggagacgatgatctagcaaaagctgccgctgaagcagctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="47058" stop="50380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47357" g_stop="47597" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47598" i_stop="48082" i_length="485">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.115" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48083" g_stop="48235" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="394" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48236" i_stop="48411" i_length="176">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48412" g_stop="48489" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="472" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48490" i_stop="48657" i_length="168">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48658" g_stop="48753" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="568" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48754" i_stop="49592" i_length="839">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49593" g_stop="49628" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="604" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49629" i_stop="49741" i_length="113">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.334" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49742" g_stop="49923" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="786" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="49924" i_stop="50000" i_length="77">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="50001" g_stop="50080" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="787" r_stop="866" r_length="80" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E740389" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47357" e_stop="47597"/>
          <exon e_start="48083" e_stop="48235"/>
          <exon e_start="48412" e_stop="48489"/>
          <exon e_start="48658" e_stop="48753"/>
          <exon e_start="49593" e_stop="49628"/>
          <exon e_start="49742" e_stop="49923"/>
          <exon e_start="50001" e_stop="50080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAGGTTAGTGGTCTTTCCTTTGCATACTTATTTAACAGGTTCTTTCTCTTTGCTTCCTCTGTTCCTCCTCATTCCCACAGTAGGAAAATATTGCCAGCTTCAAAATGGATAAATTAGCTTCAATCCAGTTCACTAAAATAGGTCATTTATACTAGTTACATCAAGCACATCTAAGTAAAGTAAGTCAAGTTGAACTCTTTTGTTAAAAAAAGAAGGTTAACAATATGAACTTTAATCATTGACAAACTGAATCTAACAAGTGCTCATGGATATGAAGAATACATAGCTAGCAACAAGGGGGAAATGGTGTAATATTGCTTGACAAGAATTGTATCACATAATAGATAAGAGCAAGCGCCCAGAGCCCTAACGACTAACAGTGAGGTGAAAATGGTCCAATATAGCATGAAATGGACTTAAAATTTGGTATCACAAATAAAACGCGGGAAATGAAGCTACATGTGAAAGCAATAAGTTGTACTTCCTTGTGTTGGTTAAATCATCAGTCCTTGCACAATACCCTTTTCTTCTTAGCACAAACAGCTATACTAAAGATTTCAATAAAATAGGTTCTTACTTTTCATGGTATAGAAATGTAGTTATCTTTCCGTGAAACTTTGAGCAACAGATCTTCTAGAAAGTAATAGCATTATCTTTTACAATAACACTACATGATGGAACAACGTCTATACATGAAGCTAATATTAGTTCCGCACTTGTAATAATTCATGCTCTAAAAGTCTATAGCCACCTGCACTTCTTGAAAAATTTATCAGAATCCAAGCTCTAAAAGTCTGTAATGATGTTGCACGTATGACATTTAATGTGATTATTCCTTGCAGATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAGGTACCAGATTGATCTATAAAATTCATCAGCTGGTTACATCATATTCTAACTGTCAATAGAGTAGATCTTTCCTATTACGAGCTTGACAAAGCTGAAAGAATTTATTTACCTAGGTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAGGTAATTCTATTGAAAACTTAAGAAGTACAATACTATAAAATTTCATGAGCTTACGTTGTTTCGCTATGTAATTAAAGGAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATG</genome_strand>
        <mrna_strand>CGATAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAG.................................................................................................................GTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAG.............................................................................GAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAGGGGAGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726596" ref_strand="+" ref_description="SGN-E726596 [LA12BB06]">
      <seq>cacaaatgctaaggctaaatttatatggctccatagtttctagtccgatagaagtcaacaaaagctgccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaagatgggatgaacggtggcacgaatggcagtggattaggtggtcgtagttgggacccaggcttggaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcagaactgggtccaggggccttcttcctacgtctcgggggactttggttagtcactttcgcagttttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagatttctcctggctgcaagtacggggactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctatgttggagataggcttttatcagcagttataccttatgaagagactggatggtatgatgggcagatgtgggtgaagcccccagagatcttagctcgggataggctgttgggatcttataaggtgaaaccagtcattaaaatgctgaagcaaacgctagttggaacaggggctttgcttgttgcagcagtctcattattcatatttgcaacaccagtagaagattttttccgcaatactttcacaacaaacgagaactcattgagttccacctcaacaaacagcacaaataaactaggcatcaggaaagaagaactgttgcgcttgccactggaagtcaaggaggacgatgatctagcaaaagctgccgctgaagcagctgatggaaagccagtttactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="47065" stop="50397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47365" g_stop="47597" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47598" i_stop="48082" i_length="485">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.115" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48083" g_stop="48235" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="386" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48236" i_stop="48411" i_length="176">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48412" g_stop="48489" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="464" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48490" i_stop="48657" i_length="168">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48658" g_stop="48753" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="560" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48754" i_stop="49592" i_length="839">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49593" g_stop="49628" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="596" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49629" i_stop="49741" i_length="113">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.334" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49742" g_stop="49923" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="778" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="49924" i_stop="50000" i_length="77">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="50001" g_stop="50097" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="779" r_stop="875" r_length="97" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E726596" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>875</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47365" e_stop="47597"/>
          <exon e_start="48083" e_stop="48235"/>
          <exon e_start="48412" e_stop="48489"/>
          <exon e_start="48658" e_stop="48753"/>
          <exon e_start="49593" e_stop="49628"/>
          <exon e_start="49742" e_stop="49923"/>
          <exon e_start="50001" e_stop="50097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAGGTTAGTGGTCTTTCCTTTGCATACTTATTTAACAGGTTCTTTCTCTTTGCTTCCTCTGTTCCTCCTCATTCCCACAGTAGGAAAATATTGCCAGCTTCAAAATGGATAAATTAGCTTCAATCCAGTTCACTAAAATAGGTCATTTATACTAGTTACATCAAGCACATCTAAGTAAAGTAAGTCAAGTTGAACTCTTTTGTTAAAAAAAGAAGGTTAACAATATGAACTTTAATCATTGACAAACTGAATCTAACAAGTGCTCATGGATATGAAGAATACATAGCTAGCAACAAGGGGGAAATGGTGTAATATTGCTTGACAAGAATTGTATCACATAATAGATAAGAGCAAGCGCCCAGAGCCCTAACGACTAACAGTGAGGTGAAAATGGTCCAATATAGCATGAAATGGACTTAAAATTTGGTATCACAAATAAAACGCGGGAAATGAAGCTACATGTGAAAGCAATAAGTTGTACTTCCTTGTGTTGGTTAAATCATCAGTCCTTGCACAATACCCTTTTCTTCTTAGCACAAACAGCTATACTAAAGATTTCAATAAAATAGGTTCTTACTTTTCATGGTATAGAAATGTAGTTATCTTTCCGTGAAACTTTGAGCAACAGATCTTCTAGAAAGTAATAGCATTATCTTTTACAATAACACTACATGATGGAACAACGTCTATACATGAAGCTAATATTAGTTCCGCACTTGTAATAATTCATGCTCTAAAAGTCTATAGCCACCTGCACTTCTTGAAAAATTTATCAGAATCCAAGCTCTAAAAGTCTGTAATGATGTTGCACGTATGACATTTAATGTGATTATTCCTTGCAGATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAGGTACCAGATTGATCTATAAAATTCATCAGCTGGTTACATCATATTCTAACTGTCAATAGAGTAGATCTTTCCTATTACGAGCTTGACAAAGCTGAAAGAATTTATTTACCTAGGTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAGGTAATTCTATTGAAAACTTAAGAAGTACAATACTATAAAATTTCATGAGCTTACGTTGTTTCGCTATGTAATTAAAGGAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGAAGGCCAGTTTACTGC</genome_strand>
        <mrna_strand>CACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAG.................................................................................................................GTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAG.............................................................................GAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGAAAGCCAGTTTACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E729298" ref_strand="+" ref_description="SGN-E729298 [LA20CE05]">
      <seq>cacaaatgctaaggctaaatttatatggctccatagtttctagtccgatagaagtcaacaaaagctgccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaagatgggatgaacggtggcacgaatggcagtggattaggtggtcgtagttgggacccaggcttggaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcagaactgggtccaggggccttcttcctacgtctcgggggactttggttagtcactttcgcagttttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagatttctcctggctgcaagtacggggactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctatgttggagataggcttttatcagcagttataccttatgaagagactggatggtatgatgggcagatgtgggtgaagcccccagagatcttagctcgggataggctgttgggatcttataaggtgaaaccagtcattaaaatgctgaagcaaacgctagttggaacaggggctttgcttgttgcagcagtctcattattcatatttgcaacaccagtagaagattttttccgcaatactttcacaacaaacgagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="47065" stop="50176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47365" g_stop="47597" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47598" i_stop="48082" i_length="485">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.115" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48083" g_stop="48235" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="386" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48236" i_stop="48411" i_length="176">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48412" g_stop="48489" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="464" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48490" i_stop="48657" i_length="168">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48658" g_stop="48753" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="560" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48754" i_stop="49592" i_length="839">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49593" g_stop="49628" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="596" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49629" i_stop="49741" i_length="113">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.334" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49742" g_stop="49876" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="731" r_length="135" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E729298" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729298" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47365" e_stop="47597"/>
          <exon e_start="48083" e_stop="48235"/>
          <exon e_start="48412" e_stop="48489"/>
          <exon e_start="48658" e_stop="48753"/>
          <exon e_start="49593" e_stop="49628"/>
          <exon e_start="49742" e_stop="49876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAGGTTAGTGGTCTTTCCTTTGCATACTTATTTAACAGGTTCTTTCTCTTTGCTTCCTCTGTTCCTCCTCATTCCCACAGTAGGAAAATATTGCCAGCTTCAAAATGGATAAATTAGCTTCAATCCAGTTCACTAAAATAGGTCATTTATACTAGTTACATCAAGCACATCTAAGTAAAGTAAGTCAAGTTGAACTCTTTTGTTAAAAAAAGAAGGTTAACAATATGAACTTTAATCATTGACAAACTGAATCTAACAAGTGCTCATGGATATGAAGAATACATAGCTAGCAACAAGGGGGAAATGGTGTAATATTGCTTGACAAGAATTGTATCACATAATAGATAAGAGCAAGCGCCCAGAGCCCTAACGACTAACAGTGAGGTGAAAATGGTCCAATATAGCATGAAATGGACTTAAAATTTGGTATCACAAATAAAACGCGGGAAATGAAGCTACATGTGAAAGCAATAAGTTGTACTTCCTTGTGTTGGTTAAATCATCAGTCCTTGCACAATACCCTTTTCTTCTTAGCACAAACAGCTATACTAAAGATTTCAATAAAATAGGTTCTTACTTTTCATGGTATAGAAATGTAGTTATCTTTCCGTGAAACTTTGAGCAACAGATCTTCTAGAAAGTAATAGCATTATCTTTTACAATAACACTACATGATGGAACAACGTCTATACATGAAGCTAATATTAGTTCCGCACTTGTAATAATTCATGCTCTAAAAGTCTATAGCCACCTGCACTTCTTGAAAAATTTATCAGAATCCAAGCTCTAAAAGTCTGTAATGATGTTGCACGTATGACATTTAATGTGATTATTCCTTGCAGATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAGGTACCAGATTGATCTATAAAATTCATCAGCTGGTTACATCATATTCTAACTGTCAATAGAGTAGATCTTTCCTATTACGAGCTTGACAAAGCTGAAAGAATTTATTTACCTAGGTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAAC</genome_strand>
        <mrna_strand>CACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAG.................................................................................................................GTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735627" ref_strand="+" ref_description="SGN-E735627 [LC02BD11]">
      <seq>ccattttatatggctccatagtttctagtccgatagaagtcaacaaaagctgccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaagatgggatgaacggtggcacgaatggcagtggattaggtggtcgtagttgggacccaggcttggaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcagaactgggtccaggggccttcttcctacgtctcgggggactttggttagtcactttcgcagttttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagatttctcctggctgcaagtacggggactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctatgttggagataggcttttatcagcagttataccttatgaagagactggatggtatgatgggcagatgtgggtgaagcccccagagatcttagctcgggataggctgttgggatcttataaggtgaaaccagtcattaaaatgctgaagcaaacgctagttggaacaggggctttgcttgttgcagcagtctcattattcatatttgcaacaccagtagaagattttttccgcaatactttcacaacaaacgagaactcattgagttccacctcaacaaacagcacaaataaactaggcatcaggaaagaagaactgttgcgcttgccactggaagtcaaggaggacgatgatctagcaaaagctgccgctgaagcagctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="47082" stop="50379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47380" g_stop="47597" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47598" i_stop="48082" i_length="485">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.115" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48083" g_stop="48235" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="371" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48236" i_stop="48411" i_length="176">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48412" g_stop="48489" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="449" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48490" i_stop="48657" i_length="168">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48658" g_stop="48753" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="545" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48754" i_stop="49592" i_length="839">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49593" g_stop="49628" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="581" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49629" i_stop="49741" i_length="113">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.334" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49742" g_stop="49923" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="763" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="49924" i_stop="50000" i_length="77">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="50001" g_stop="50079" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="764" r_stop="842" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E735627" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735627" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47380" e_stop="47597"/>
          <exon e_start="48083" e_stop="48235"/>
          <exon e_start="48412" e_stop="48489"/>
          <exon e_start="48658" e_stop="48753"/>
          <exon e_start="49593" e_stop="49628"/>
          <exon e_start="49742" e_stop="49923"/>
          <exon e_start="50001" e_stop="50079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAGGTTAGTGGTCTTTCCTTTGCATACTTATTTAACAGGTTCTTTCTCTTTGCTTCCTCTGTTCCTCCTCATTCCCACAGTAGGAAAATATTGCCAGCTTCAAAATGGATAAATTAGCTTCAATCCAGTTCACTAAAATAGGTCATTTATACTAGTTACATCAAGCACATCTAAGTAAAGTAAGTCAAGTTGAACTCTTTTGTTAAAAAAAGAAGGTTAACAATATGAACTTTAATCATTGACAAACTGAATCTAACAAGTGCTCATGGATATGAAGAATACATAGCTAGCAACAAGGGGGAAATGGTGTAATATTGCTTGACAAGAATTGTATCACATAATAGATAAGAGCAAGCGCCCAGAGCCCTAACGACTAACAGTGAGGTGAAAATGGTCCAATATAGCATGAAATGGACTTAAAATTTGGTATCACAAATAAAACGCGGGAAATGAAGCTACATGTGAAAGCAATAAGTTGTACTTCCTTGTGTTGGTTAAATCATCAGTCCTTGCACAATACCCTTTTCTTCTTAGCACAAACAGCTATACTAAAGATTTCAATAAAATAGGTTCTTACTTTTCATGGTATAGAAATGTAGTTATCTTTCCGTGAAACTTTGAGCAACAGATCTTCTAGAAAGTAATAGCATTATCTTTTACAATAACACTACATGATGGAACAACGTCTATACATGAAGCTAATATTAGTTCCGCACTTGTAATAATTCATGCTCTAAAAGTCTATAGCCACCTGCACTTCTTGAAAAATTTATCAGAATCCAAGCTCTAAAAGTCTGTAATGATGTTGCACGTATGACATTTAATGTGATTATTCCTTGCAGATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAGGTACCAGATTGATCTATAAAATTCATCAGCTGGTTACATCATATTCTAACTGTCAATAGAGTAGATCTTTCCTATTACGAGCTTGACAAAGCTGAAAGAATTTATTTACCTAGGTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAGGTAATTCTATTGAAAACTTAAGAAGTACAATACTATAAAATTTCATGAGCTTACGTTGTTTCGCTATGTAATTAAAGGAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGAT</genome_strand>
        <mrna_strand>CCATTTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAG.................................................................................................................GTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAG.............................................................................GAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735421" ref_strand="+" ref_description="SGN-E735421 [LC01CB06]">
      <seq>caatttatatggctccatagtttctagtccgatagaagtcaacaaaagctgccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaagatgggatgaacggtggcacgaatggcagtggattaggtggtcgtagttgggacccaggcttggaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcagaactgggtccaggggccttcttcctacgtctcgggggactttggttagtcactttcgcagttttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagatttctcctggctgcaagtacggggactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctatgttggagataggcttttatcagcagttataccttatgaagagactggatggtatgatgggcagatgtgggtgaagcccccagagatcttagctcgggataggctgttgggatcttataaggtgaaaccagtcattaaaatgctgaagcaaacgctagttggaacaggggctttgcttgttgcagcagtctcattattcatatttgcaacaccagtagaagattttttccgcaatactttcacaacaaacgagaactcattgagttccacctcaacaaacagcacaaataaactaggcatcaggaaagaagaactgttgcgcttgccactggaagtcaaggaggacgatgatctagcaaaagctgccgctgaaacagctgatggaaggccagtttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="47082" stop="50395"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47381" g_stop="47597" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47598" i_stop="48082" i_length="485">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.115" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48083" g_stop="48235" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="370" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48236" i_stop="48411" i_length="176">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48412" g_stop="48489" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="448" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48490" i_stop="48657" i_length="168">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48658" g_stop="48753" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="544" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48754" i_stop="49592" i_length="839">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49593" g_stop="49628" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="580" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49629" i_stop="49741" i_length="113">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.334" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49742" g_stop="49923" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="762" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="49924" i_stop="50000" i_length="77">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="50001" g_stop="50095" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="763" r_stop="857" r_length="95" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E735421" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>857</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47381" e_stop="47597"/>
          <exon e_start="48083" e_stop="48235"/>
          <exon e_start="48412" e_stop="48489"/>
          <exon e_start="48658" e_stop="48753"/>
          <exon e_start="49593" e_stop="49628"/>
          <exon e_start="49742" e_stop="49923"/>
          <exon e_start="50001" e_stop="50095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAGGTTAGTGGTCTTTCCTTTGCATACTTATTTAACAGGTTCTTTCTCTTTGCTTCCTCTGTTCCTCCTCATTCCCACAGTAGGAAAATATTGCCAGCTTCAAAATGGATAAATTAGCTTCAATCCAGTTCACTAAAATAGGTCATTTATACTAGTTACATCAAGCACATCTAAGTAAAGTAAGTCAAGTTGAACTCTTTTGTTAAAAAAAGAAGGTTAACAATATGAACTTTAATCATTGACAAACTGAATCTAACAAGTGCTCATGGATATGAAGAATACATAGCTAGCAACAAGGGGGAAATGGTGTAATATTGCTTGACAAGAATTGTATCACATAATAGATAAGAGCAAGCGCCCAGAGCCCTAACGACTAACAGTGAGGTGAAAATGGTCCAATATAGCATGAAATGGACTTAAAATTTGGTATCACAAATAAAACGCGGGAAATGAAGCTACATGTGAAAGCAATAAGTTGTACTTCCTTGTGTTGGTTAAATCATCAGTCCTTGCACAATACCCTTTTCTTCTTAGCACAAACAGCTATACTAAAGATTTCAATAAAATAGGTTCTTACTTTTCATGGTATAGAAATGTAGTTATCTTTCCGTGAAACTTTGAGCAACAGATCTTCTAGAAAGTAATAGCATTATCTTTTACAATAACACTACATGATGGAACAACGTCTATACATGAAGCTAATATTAGTTCCGCACTTGTAATAATTCATGCTCTAAAAGTCTATAGCCACCTGCACTTCTTGAAAAATTTATCAGAATCCAAGCTCTAAAAGTCTGTAATGATGTTGCACGTATGACATTTAATGTGATTATTCCTTGCAGATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAGGTACCAGATTGATCTATAAAATTCATCAGCTGGTTACATCATATTCTAACTGTCAATAGAGTAGATCTTTCCTATTACGAGCTTGACAAAGCTGAAAGAATTTATTTACCTAGGTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAGGTAATTCTATTGAAAACTTAAGAAGTACAATACTATAAAATTTCATGAGCTTACGTTGTTTCGCTATGTAATTAAAGGAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGAAGGCCAGTTTACT</genome_strand>
        <mrna_strand>CAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAG.................................................................................................................GTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAG.............................................................................GAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAACAGCTGATGGAAGGCCAGTTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735669" ref_strand="+" ref_description="SGN-E735669 [LC02CB06]">
      <seq>aatttatatggctccatagtttctagtccgatagaagtcaacaaaagctgccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaagatgggatgaacggtggcacgaatggcagtggattaggtggtcgtagttgggacccaggcttggaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcagaactgggtccaggggccttcttcctacgtctcgggggactttggttagtcactttcgcagttttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagatttctcctggctgcaagtacggggactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctatgttggagataggcttttatcagcagttataccttatgaagagactggatggtatgatgggcagatgtgggtgaagcccccagagatcttagctcgggataggctgttgggatcttataaggtgaaaccagtcattaaaatgctgaagcaaacgctagttggaacaggggctttgcttgttgcagcagtctcattattcatatttgcaacaccagtagaagattttttccgcaatactttcacaacaaacgagaactcattgagttccacctcaacaaacagcacaaataaactaggcatcaggaaagaagaactgttgcgcttgccactggaagtcaaggaggacgatgatctagcaaaagctgccgctgaagcagctgatgggaggccagtttactgcaaagataggtattatcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="47082" stop="50415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47382" g_stop="47597" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47598" i_stop="48082" i_length="485">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.115" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48083" g_stop="48235" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="369" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48236" i_stop="48411" i_length="176">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48412" g_stop="48489" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="447" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48490" i_stop="48657" i_length="168">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48658" g_stop="48753" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="543" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48754" i_stop="49592" i_length="839">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49593" g_stop="49628" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="579" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49629" i_stop="49741" i_length="113">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.334" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49742" g_stop="49923" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="761" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="49924" i_stop="50000" i_length="77">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="50001" g_stop="50115" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="762" r_stop="876" r_length="115" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E735669" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>876</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47382" e_stop="47597"/>
          <exon e_start="48083" e_stop="48235"/>
          <exon e_start="48412" e_stop="48489"/>
          <exon e_start="48658" e_stop="48753"/>
          <exon e_start="49593" e_stop="49628"/>
          <exon e_start="49742" e_stop="49923"/>
          <exon e_start="50001" e_stop="50115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAGGTTAGTGGTCTTTCCTTTGCATACTTATTTAACAGGTTCTTTCTCTTTGCTTCCTCTGTTCCTCCTCATTCCCACAGTAGGAAAATATTGCCAGCTTCAAAATGGATAAATTAGCTTCAATCCAGTTCACTAAAATAGGTCATTTATACTAGTTACATCAAGCACATCTAAGTAAAGTAAGTCAAGTTGAACTCTTTTGTTAAAAAAAGAAGGTTAACAATATGAACTTTAATCATTGACAAACTGAATCTAACAAGTGCTCATGGATATGAAGAATACATAGCTAGCAACAAGGGGGAAATGGTGTAATATTGCTTGACAAGAATTGTATCACATAATAGATAAGAGCAAGCGCCCAGAGCCCTAACGACTAACAGTGAGGTGAAAATGGTCCAATATAGCATGAAATGGACTTAAAATTTGGTATCACAAATAAAACGCGGGAAATGAAGCTACATGTGAAAGCAATAAGTTGTACTTCCTTGTGTTGGTTAAATCATCAGTCCTTGCACAATACCCTTTTCTTCTTAGCACAAACAGCTATACTAAAGATTTCAATAAAATAGGTTCTTACTTTTCATGGTATAGAAATGTAGTTATCTTTCCGTGAAACTTTGAGCAACAGATCTTCTAGAAAGTAATAGCATTATCTTTTACAATAACACTACATGATGGAACAACGTCTATACATGAAGCTAATATTAGTTCCGCACTTGTAATAATTCATGCTCTAAAAGTCTATAGCCACCTGCACTTCTTGAAAAATTTATCAGAATCCAAGCTCTAAAAGTCTGTAATGATGTTGCACGTATGACATTTAATGTGATTATTCCTTGCAGATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAGGTACCAGATTGATCTATAAAATTCATCAGCTGGTTACATCATATTCTAACTGTCAATAGAGTAGATCTTTCCTATTACGAGCTTGACAAAGCTGAAAGAATTTATTTACCTAGGTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAGGTAATTCTATTGAAAACTTAAGAAGTACAATACTATAAAATTTCATGAGCTTACGTTGTTTCGCTATGTAATTAAAGGAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGAAGGCCAGTTTACTGCAGAGATAGGTATTATCGT</genome_strand>
        <mrna_strand>AATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAG.................................................................................................................GTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAG.............................................................................GAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGGAGGCCAGTTTACTGCAAAGATAGGTATTATCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E348117" ref_strand="+" ref_description="SGN-E348117 [cTOF-31-N22]">
      <seq>gtttctagtccgatagaagtcaaccaaagctgccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaagatgggatgaacggtggcacgaatggcagtggattaggtggtcgtagttgggacccaggcttggaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcagaactgggtccaggggccttcttcctacgtctcgggggactttggttagtcactttcgcagttttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagatttctcctggctgcaagtacggggactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctatgttggagataggcttttatcagcagttataccttatgaagagactgggatggtatgatgggccaatggtggggtgaagcccccagagatcttagctcggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="47100" stop="49061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47400" g_stop="47597" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47598" i_stop="48082" i_length="485">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.115" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48083" g_stop="48235" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="351" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48236" i_stop="48411" i_length="176">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48412" g_stop="48489" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="429" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48490" i_stop="48657" i_length="168">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48658" g_stop="48753" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="528" r_length="99" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E348117" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47400" e_stop="47597"/>
          <exon e_start="48083" e_stop="48235"/>
          <exon e_start="48412" e_stop="48489"/>
          <exon e_start="48658" e_stop="48753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACT-GGATGGTATGATGGGCAGAT-GT-GGGTGAAGCCCCCAGAG</genome_strand>
        <mrna_strand>GTTTCTAGTCCGATAGAAGTCAACCAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGGATGGTATGATGGGCCAATGGTGGGGTGAAGCCCCCAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725776" ref_strand="+" ref_description="SGN-E725776 [LA05CF04]">
      <seq>gtttctagtccgatagaagtcaacaaaagctgccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaagatgggatgaacggtggcacgaatggcagtggattaggtggtcgtagttgggacccaggcttggaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcagaactgggtccaggggccttcttcctacgtctcgggggactttggttagtcactttcgcagttttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagaattctcctggctgcaagtacggggactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctatgttggagataggcttttatcagcagttataccttatgaagagactggatggtatgatgggcagatgtgggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="47100" stop="49041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47400" g_stop="47597" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47598" i_stop="48082" i_length="485">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.115" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48083" g_stop="48235" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="351" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48236" i_stop="48411" i_length="176">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48412" g_stop="48489" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="429" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48490" i_stop="48657" i_length="168">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48658" g_stop="48741" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="513" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E725776" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47400" e_stop="47597"/>
          <exon e_start="48083" e_stop="48235"/>
          <exon e_start="48412" e_stop="48489"/>
          <exon e_start="48658" e_stop="48741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTG</genome_strand>
        <mrna_strand>GTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGAATTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728507" ref_strand="+" ref_description="SGN-E728507 [LA18AC03]">
      <seq>gccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaagatgggatgaacggtggcacgaatggcagtggattaggtggtcgtagttgggacccaggcttggaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcagaactgggtccaggggccttcttcctacgtctcgggggactttggttagtcactttcgcagttttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagatttctcctggctgcaagtacggggactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctatgttggagataggcttttatcagcagttataccttatgaagagactggatggtatgatgggcagatgtgggtgaagcccccagagatcttagctcgggataggctgttgggatcttataaggtgaaaccagtcattaaaatgctgaagcaaacgctagttggaacaggggctttgcttgttgcagcagtctcattattcatatttgcaacaccagtagaagattttttccgcaatactttcacaacaaacgagaactcattgagttccacctcaacaaacagcacaaataaactaggcatcaggaaagaagaactgttgcgcttgccactggaagtcaaggaggacgatgatctagcaaaagctgccgctgaagcagctgatggaaggccagtttactgcagagataagtattatcgtgcattggccggtggacagtactgcaaatggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="47131" stop="50447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47431" g_stop="47597" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47598" i_stop="48082" i_length="485">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.115" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48083" g_stop="48235" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="320" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48236" i_stop="48411" i_length="176">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48412" g_stop="48489" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="398" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48490" i_stop="48657" i_length="168">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48658" g_stop="48753" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="494" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48754" i_stop="49592" i_length="839">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49593" g_stop="49628" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="530" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49629" i_stop="49741" i_length="113">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.334" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49742" g_stop="49923" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="712" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="49924" i_stop="50000" i_length="77">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="50001" g_stop="50147" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="713" r_stop="859" r_length="147" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E728507" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>859</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47431" e_stop="47597"/>
          <exon e_start="48083" e_stop="48235"/>
          <exon e_start="48412" e_stop="48489"/>
          <exon e_start="48658" e_stop="48753"/>
          <exon e_start="49593" e_stop="49628"/>
          <exon e_start="49742" e_stop="49923"/>
          <exon e_start="50001" e_stop="50147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAGGTTAGTGGTCTTTCCTTTGCATACTTATTTAACAGGTTCTTTCTCTTTGCTTCCTCTGTTCCTCCTCATTCCCACAGTAGGAAAATATTGCCAGCTTCAAAATGGATAAATTAGCTTCAATCCAGTTCACTAAAATAGGTCATTTATACTAGTTACATCAAGCACATCTAAGTAAAGTAAGTCAAGTTGAACTCTTTTGTTAAAAAAAGAAGGTTAACAATATGAACTTTAATCATTGACAAACTGAATCTAACAAGTGCTCATGGATATGAAGAATACATAGCTAGCAACAAGGGGGAAATGGTGTAATATTGCTTGACAAGAATTGTATCACATAATAGATAAGAGCAAGCGCCCAGAGCCCTAACGACTAACAGTGAGGTGAAAATGGTCCAATATAGCATGAAATGGACTTAAAATTTGGTATCACAAATAAAACGCGGGAAATGAAGCTACATGTGAAAGCAATAAGTTGTACTTCCTTGTGTTGGTTAAATCATCAGTCCTTGCACAATACCCTTTTCTTCTTAGCACAAACAGCTATACTAAAGATTTCAATAAAATAGGTTCTTACTTTTCATGGTATAGAAATGTAGTTATCTTTCCGTGAAACTTTGAGCAACAGATCTTCTAGAAAGTAATAGCATTATCTTTTACAATAACACTACATGATGGAACAACGTCTATACATGAAGCTAATATTAGTTCCGCACTTGTAATAATTCATGCTCTAAAAGTCTATAGCCACCTGCACTTCTTGAAAAATTTATCAGAATCCAAGCTCTAAAAGTCTGTAATGATGTTGCACGTATGACATTTAATGTGATTATTCCTTGCAGATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAGGTACCAGATTGATCTATAAAATTCATCAGCTGGTTACATCATATTCTAACTGTCAATAGAGTAGATCTTTCCTATTACGAGCTTGACAAAGCTGAAAGAATTTATTTACCTAGGTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAGGTAATTCTATTGAAAACTTAAGAAGTACAATACTATAAAATTTCATGAGCTTACGTTGTTTCGCTATGTAATTAAAGGAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGAAGGCCAGTTTACTGCAGAGATAGGTATTATCGTGCATTGGCCGGTGGACAGTACTGCAAATGGGA</genome_strand>
        <mrna_strand>GCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAG.................................................................................................................GTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAG.............................................................................GAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGAAGGCCAGTTTACTGCAGAGATAAGTATTATCGTGCATTGGCCGGTGGACAGTACTGCAAATGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728646" ref_strand="+" ref_description="SGN-E728646 [LA18CA03]">
      <seq>gccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaagatgggatgaacggtggcacgaatggcagtggattaggtggtcgtagttgggacccaggcttggaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcagaactgggtccaggggccttcttcctacgtctcgggggactttggttagtcactttcgcagttttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagatttctcctggctgcaagtacggggactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctatgttggagataggcttttatcagcagttataccttatgaagagactggatggtatgatgggcagatgtgggtgaagcccccagagatcttagctcgggataggctgttgggatcttataaggtgaaaccagtcattaaaatgctgaagcaaacgctagttggaacaggggctttgcttgttgcagcagtctcattattcatatttgcaacaccagtagaagattttttccgcaatactttcacaacaaacgagaactcattgagttccacctcaacaaacagcacaaataaactaggcatcaggaaagaagaactgttgcgcttgccactggaagtcaaggaggacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="47131" stop="50344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47431" g_stop="47597" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47598" i_stop="48082" i_length="485">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.115" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48083" g_stop="48235" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="320" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48236" i_stop="48411" i_length="176">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48412" g_stop="48489" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="398" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48490" i_stop="48657" i_length="168">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48658" g_stop="48753" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="494" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48754" i_stop="49592" i_length="839">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49593" g_stop="49628" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="530" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49629" i_stop="49741" i_length="113">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.334" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49742" g_stop="49923" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="712" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="49924" i_stop="50000" i_length="77">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="50001" g_stop="50044" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="713" r_stop="756" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E728646" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47431" e_stop="47597"/>
          <exon e_start="48083" e_stop="48235"/>
          <exon e_start="48412" e_stop="48489"/>
          <exon e_start="48658" e_stop="48753"/>
          <exon e_start="49593" e_stop="49628"/>
          <exon e_start="49742" e_stop="49923"/>
          <exon e_start="50001" e_stop="50044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAGGTTAGTGGTCTTTCCTTTGCATACTTATTTAACAGGTTCTTTCTCTTTGCTTCCTCTGTTCCTCCTCATTCCCACAGTAGGAAAATATTGCCAGCTTCAAAATGGATAAATTAGCTTCAATCCAGTTCACTAAAATAGGTCATTTATACTAGTTACATCAAGCACATCTAAGTAAAGTAAGTCAAGTTGAACTCTTTTGTTAAAAAAAGAAGGTTAACAATATGAACTTTAATCATTGACAAACTGAATCTAACAAGTGCTCATGGATATGAAGAATACATAGCTAGCAACAAGGGGGAAATGGTGTAATATTGCTTGACAAGAATTGTATCACATAATAGATAAGAGCAAGCGCCCAGAGCCCTAACGACTAACAGTGAGGTGAAAATGGTCCAATATAGCATGAAATGGACTTAAAATTTGGTATCACAAATAAAACGCGGGAAATGAAGCTACATGTGAAAGCAATAAGTTGTACTTCCTTGTGTTGGTTAAATCATCAGTCCTTGCACAATACCCTTTTCTTCTTAGCACAAACAGCTATACTAAAGATTTCAATAAAATAGGTTCTTACTTTTCATGGTATAGAAATGTAGTTATCTTTCCGTGAAACTTTGAGCAACAGATCTTCTAGAAAGTAATAGCATTATCTTTTACAATAACACTACATGATGGAACAACGTCTATACATGAAGCTAATATTAGTTCCGCACTTGTAATAATTCATGCTCTAAAAGTCTATAGCCACCTGCACTTCTTGAAAAATTTATCAGAATCCAAGCTCTAAAAGTCTGTAATGATGTTGCACGTATGACATTTAATGTGATTATTCCTTGCAGATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAGGTACCAGATTGATCTATAAAATTCATCAGCTGGTTACATCATATTCTAACTGTCAATAGAGTAGATCTTTCCTATTACGAGCTTGACAAAGCTGAAAGAATTTATTTACCTAGGTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAGGTAATTCTATTGAAAACTTAAGAAGTACAATACTATAAAATTTCATGAGCTTACGTTGTTTCGCTATGTAATTAAAGGAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACG</genome_strand>
        <mrna_strand>GCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAG.................................................................................................................GTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAG.............................................................................GAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733822" ref_strand="+" ref_description="SGN-E733822 [LB11AB09]">
      <seq>ctcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaagatgggatgaacggtggcacgaatggcagtggattaggtggtcgtagttgggacccaggcttggaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcagaactgggtccaggggccttcttcctacgtctcgggggactttggttagtcactttcgcagttttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagatttctcctggctgcaagtacggggactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctatgttggagataggcttttatcagcagttataccttatgaagagactggatggtatgatgggcagatgtgggtgaagcccccagagatcttagctcgggataggctgttgggatcttataaggtgaaaccagtcattaaaatgctgaagcaaacgctagttggaacaggggctttgcttgttgcagcagtctcattattcatatttgcaacaccagtagaagattttttccgcaatactttcacaacaaacgagaactcattgagttccacctcaacaaacagcacaaataaactaggcatcaggaaagaagaactgttgcgcttgccactggaagtcaaggaggacgatgatctagcaaaagctgccgctgaagcagctgatggaaggccagtttactgcagagataggtattatcgtgcattgggcggtggacagtactgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="47143" stop="50441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47442" g_stop="47597" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47598" i_stop="48082" i_length="485">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.115" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48083" g_stop="48235" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="309" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48236" i_stop="48411" i_length="176">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48412" g_stop="48489" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="387" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48490" i_stop="48657" i_length="168">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48658" g_stop="48753" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="483" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48754" i_stop="49592" i_length="839">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49593" g_stop="49628" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="519" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49629" i_stop="49741" i_length="113">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.334" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49742" g_stop="49923" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="701" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="49924" i_stop="50000" i_length="77">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="50001" g_stop="50141" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="702" r_stop="842" r_length="141" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E733822" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733822" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47442" e_stop="47597"/>
          <exon e_start="48083" e_stop="48235"/>
          <exon e_start="48412" e_stop="48489"/>
          <exon e_start="48658" e_stop="48753"/>
          <exon e_start="49593" e_stop="49628"/>
          <exon e_start="49742" e_stop="49923"/>
          <exon e_start="50001" e_stop="50141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAGGTTAGTGGTCTTTCCTTTGCATACTTATTTAACAGGTTCTTTCTCTTTGCTTCCTCTGTTCCTCCTCATTCCCACAGTAGGAAAATATTGCCAGCTTCAAAATGGATAAATTAGCTTCAATCCAGTTCACTAAAATAGGTCATTTATACTAGTTACATCAAGCACATCTAAGTAAAGTAAGTCAAGTTGAACTCTTTTGTTAAAAAAAGAAGGTTAACAATATGAACTTTAATCATTGACAAACTGAATCTAACAAGTGCTCATGGATATGAAGAATACATAGCTAGCAACAAGGGGGAAATGGTGTAATATTGCTTGACAAGAATTGTATCACATAATAGATAAGAGCAAGCGCCCAGAGCCCTAACGACTAACAGTGAGGTGAAAATGGTCCAATATAGCATGAAATGGACTTAAAATTTGGTATCACAAATAAAACGCGGGAAATGAAGCTACATGTGAAAGCAATAAGTTGTACTTCCTTGTGTTGGTTAAATCATCAGTCCTTGCACAATACCCTTTTCTTCTTAGCACAAACAGCTATACTAAAGATTTCAATAAAATAGGTTCTTACTTTTCATGGTATAGAAATGTAGTTATCTTTCCGTGAAACTTTGAGCAACAGATCTTCTAGAAAGTAATAGCATTATCTTTTACAATAACACTACATGATGGAACAACGTCTATACATGAAGCTAATATTAGTTCCGCACTTGTAATAATTCATGCTCTAAAAGTCTATAGCCACCTGCACTTCTTGAAAAATTTATCAGAATCCAAGCTCTAAAAGTCTGTAATGATGTTGCACGTATGACATTTAATGTGATTATTCCTTGCAGATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAGGTACCAGATTGATCTATAAAATTCATCAGCTGGTTACATCATATTCTAACTGTCAATAGAGTAGATCTTTCCTATTACGAGCTTGACAAAGCTGAAAGAATTTATTTACCTAGGTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAGGTAATTCTATTGAAAACTTAAGAAGTACAATACTATAAAATTTCATGAGCTTACGTTGTTTCGCTATGTAATTAAAGGAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGAAGGCCAGTTTACTGCAGAGATAGGTATTATCGTGCATTGGCCGGTGGACAGTACTGCAA</genome_strand>
        <mrna_strand>CTCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAG.................................................................................................................GTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAG.............................................................................GAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGAAGGCCAGTTTACTGCAGAGATAGGTATTATCGTGCATTGGGCGGTGGACAGTACTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278922" ref_strand="+" ref_description="SGN-E278922 [cLER-2-A18]">
      <seq>taaagccctgaaagatgggatgaacggtggcacgaatggcagtggattaggtggtcgtagttgggacccaggcttggaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcagaactgggtccaggggccttcttcctacgtctcgggggactttggttagtcactttcgcagttttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagatttctcctggctgcaagtacggggactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctatgttggagataggcttttatcagcagttataccttatgaagagactggatggtatgatgggcagatgtgggtgaagcccccagagatcttagctcgggataggctgttgggatcttataaggtgaaaccagtcattaaaatgctgaagcaaacgctagttggaacaggggctttgcttgttgcagcagtctcatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="47192" stop="50116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47492" g_stop="47597" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47598" i_stop="48082" i_length="485">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.115" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48083" g_stop="48235" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="259" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48236" i_stop="48411" i_length="176">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48412" g_stop="48489" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="337" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48490" i_stop="48657" i_length="168">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48658" g_stop="48753" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="433" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48754" i_stop="49592" i_length="839">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49593" g_stop="49628" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="469" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49629" i_stop="49741" i_length="113">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.334" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49742" g_stop="49816" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="544" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E278922" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47492" e_stop="47597"/>
          <exon e_start="48083" e_stop="48235"/>
          <exon e_start="48412" e_stop="48489"/>
          <exon e_start="48658" e_stop="48753"/>
          <exon e_start="49593" e_stop="49628"/>
          <exon e_start="49742" e_stop="49816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAGGTTAGTGGTCTTTCCTTTGCATACTTATTTAACAGGTTCTTTCTCTTTGCTTCCTCTGTTCCTCCTCATTCCCACAGTAGGAAAATATTGCCAGCTTCAAAATGGATAAATTAGCTTCAATCCAGTTCACTAAAATAGGTCATTTATACTAGTTACATCAAGCACATCTAAGTAAAGTAAGTCAAGTTGAACTCTTTTGTTAAAAAAAGAAGGTTAACAATATGAACTTTAATCATTGACAAACTGAATCTAACAAGTGCTCATGGATATGAAGAATACATAGCTAGCAACAAGGGGGAAATGGTGTAATATTGCTTGACAAGAATTGTATCACATAATAGATAAGAGCAAGCGCCCAGAGCCCTAACGACTAACAGTGAGGTGAAAATGGTCCAATATAGCATGAAATGGACTTAAAATTTGGTATCACAAATAAAACGCGGGAAATGAAGCTACATGTGAAAGCAATAAGTTGTACTTCCTTGTGTTGGTTAAATCATCAGTCCTTGCACAATACCCTTTTCTTCTTAGCACAAACAGCTATACTAAAGATTTCAATAAAATAGGTTCTTACTTTTCATGGTATAGAAATGTAGTTATCTTTCCGTGAAACTTTGAGCAACAGATCTTCTAGAAAGTAATAGCATTATCTTTTACAATAACACTACATGATGGAACAACGTCTATACATGAAGCTAATATTAGTTCCGCACTTGTAATAATTCATGCTCTAAAAGTCTATAGCCACCTGCACTTCTTGAAAAATTTATCAGAATCCAAGCTCTAAAAGTCTGTAATGATGTTGCACGTATGACATTTAATGTGATTATTCCTTGCAGATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAGGTACCAGATTGATCTATAAAATTCATCAGCTGGTTACATCATATTCTAACTGTCAATAGAGTAGATCTTTCCTATTACGAGCTTGACAAAGCTGAAAGAATTTATTTACCTAGGTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTA</genome_strand>
        <mrna_strand>TAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAG.................................................................................................................GTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E291353" ref_strand="+" ref_description="SGN-E291353 [cLET-2-F13]">
      <seq>actttggttagtcactttcgcagttttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagatttctcctggctgcaagtacggggactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctatgttggagataggcttttatcagcagttataccttatgaagagactggatggtatgatgggcagatgtgggtgaagcccccagagatcttagctcgggataggctgttgggatcttataaggtgaaaccagtcattaaaatgctgaagcaaacgctagttggaacaggggctttgcttgttgcagcagtctcattattcatatttgcaacaccagtagaagattttttccgcaatactttcacaacaaacgagaactcattgagttccacctcaacaaacagcacaaataaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="47869" stop="50214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48169" g_stop="48235" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48236" i_stop="48411" i_length="176">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48412" g_stop="48489" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="145" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48490" i_stop="48657" i_length="168">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48658" g_stop="48753" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="241" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48754" i_stop="49592" i_length="839">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49593" g_stop="49628" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="277" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49629" i_stop="49741" i_length="113">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.334" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49742" g_stop="49914" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="450" r_length="173" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E291353" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291353" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48169" e_stop="48235"/>
          <exon e_start="48412" e_stop="48489"/>
          <exon e_start="48658" e_stop="48753"/>
          <exon e_start="49593" e_stop="49628"/>
          <exon e_start="49742" e_stop="49914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAGGTTAGTGGTCTTTCCTTTGCATACTTATTTAACAGGTTCTTTCTCTTTGCTTCCTCTGTTCCTCCTCATTCCCACAGTAGGAAAATATTGCCAGCTTCAAAATGGATAAATTAGCTTCAATCCAGTTCACTAAAATAGGTCATTTATACTAGTTACATCAAGCACATCTAAGTAAAGTAAGTCAAGTTGAACTCTTTTGTTAAAAAAAGAAGGTTAACAATATGAACTTTAATCATTGACAAACTGAATCTAACAAGTGCTCATGGATATGAAGAATACATAGCTAGCAACAAGGGGGAAATGGTGTAATATTGCTTGACAAGAATTGTATCACATAATAGATAAGAGCAAGCGCCCAGAGCCCTAACGACTAACAGTGAGGTGAAAATGGTCCAATATAGCATGAAATGGACTTAAAATTTGGTATCACAAATAAAACGCGGGAAATGAAGCTACATGTGAAAGCAATAAGTTGTACTTCCTTGTGTTGGTTAAATCATCAGTCCTTGCACAATACCCTTTTCTTCTTAGCACAAACAGCTATACTAAAGATTTCAATAAAATAGGTTCTTACTTTTCATGGTATAGAAATGTAGTTATCTTTCCGTGAAACTTTGAGCAACAGATCTTCTAGAAAGTAATAGCATTATCTTTTACAATAACACTACATGATGGAACAACGTCTATACATGAAGCTAATATTAGTTCCGCACTTGTAATAATTCATGCTCTAAAAGTCTATAGCCACCTGCACTTCTTGAAAAATTTATCAGAATCCAAGCTCTAAAAGTCTGTAATGATGTTGCACGTATGACATTTAATGTGATTATTCCTTGCAGATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAGGTACCAGATTGATCTATAAAATTCATCAGCTGGTTACATCATATTCTAACTGTCAATAGAGTAGATCTTTCCTATTACGAGCTTGACAAAGCTGAAAGAATTTATTTACCTAGGTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACT</genome_strand>
        <mrna_strand>ACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAG.................................................................................................................GTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E577461" ref_strand="-" ref_description="SGN-E577461 [59358]">
      <seq>caagtacagggactcttttcttgttgcactgattgtcctaagaatttatctgggatggagctatgttggagataggctttttatcagcaagttataccttatgaagagaccggatggtatgatggacagatgtgggtgaagccccgctgagatcctagctcgggataggctgttgggctcttataaggtgaaaccagtcattaaaatgctgaagcaaacgctagttggaacaggggctttactagttgcagcagtctcattattcatatttgcaacaccagtagaagattttttccgcgatactttcacaacaaaagaaaactcattgagttccacctcaacaaacagcacaaataaactaggcatcaggaaagaagaactgttacgcttgccactggaagtcaaggaggacgatgatctggctaaagctgctgctgaagcagctgatggaaggccagtttactgcagagataggtattatcgtgcattggccggtggtcagtactgcaaatgggaagacttggttaaataagaggatatataagtgaagaaagctacagttaaattctatgattgctcaaaagatctgtacaattgagcctcttcttataattttaaagaagaaattttgatgttttacgcattagataatgtgtatgcaaagaaaaaaaagaaagagaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="48137" stop="50615"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48437" g_stop="48489" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48490" i_stop="48657" i_length="168">
            <donor d_prob="0.831" d_score="0.96"/>
            <acceptor a_prob="0.341" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48658" g_stop="48753" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="151" r_length="99" r_score="0.906"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48754" i_stop="49592" i_length="839">
            <donor d_prob="0.990" d_score="0.90"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49593" g_stop="49628" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="187" r_length="36" r_score="0.944"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49629" i_stop="49741" i_length="113">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.334" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49742" g_stop="49923" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="369" r_length="182" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49924" i_stop="50000" i_length="77">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50001" g_stop="50315" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="683" r_length="314" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E577461" ref_strand="-">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577461" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="48437" e_stop="48489"/>
          <exon e_start="48658" e_stop="48753"/>
          <exon e_start="49593" e_stop="49628"/>
          <exon e_start="49742" e_stop="49923"/>
          <exon e_start="50001" e_stop="50315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGC-TTTTATCAGC-AGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCC-CAGAGGTTAGTGGTCTTTCCTTTGCATACTTATTTAACAGGTTCTTTCTCTTTGCTTCCTCTGTTCCTCCTCATTCCCACAGTAGGAAAATATTGCCAGCTTCAAAATGGATAAATTAGCTTCAATCCAGTTCACTAAAATAGGTCATTTATACTAGTTACATCAAGCACATCTAAGTAAAGTAAGTCAAGTTGAACTCTTTTGTTAAAAAAAGAAGGTTAACAATATGAACTTTAATCATTGACAAACTGAATCTAACAAGTGCTCATGGATATGAAGAATACATAGCTAGCAACAAGGGGGAAATGGTGTAATATTGCTTGACAAGAATTGTATCACATAATAGATAAGAGCAAGCGCCCAGAGCCCTAACGACTAACAGTGAGGTGAAAATGGTCCAATATAGCATGAAATGGACTTAAAATTTGGTATCACAAATAAAACGCGGGAAATGAAGCTACATGTGAAAGCAATAAGTTGTACTTCCTTGTGTTGGTTAAATCATCAGTCCTTGCACAATACCCTTTTCTTCTTAGCACAAACAGCTATACTAAAGATTTCAATAAAATAGGTTCTTACTTTTCATGGTATAGAAATGTAGTTATCTTTCCGTGAAACTTTGAGCAACAGATCTTCTAGAAAGTAATAGCATTATCTTTTACAATAACACTACATGATGGAACAACGTCTATACATGAAGCTAATATTAGTTCCGCACTTGTAATAATTCATGCTCTAAAAGTCTATAGCCACCTGCACTTCTTGAAAAATTTATCAGAATCCAAGCTCTAAAAGTCTGTAATGATGTTGCACGTATGACATTTAATGTGATTATTCCTTGCAGATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAGGTACCAGATTGATCTATAAAATTCATCAGCTGGTTACATCATATTCTAACTGTCAATAGAGTAGATCTTTCCTATTACGAGCTTGACAAAGCTGAAAGAATTTATTTACCTAGGTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAGGTAATTCTATTGAAAACTTAAGAAGTACAATACTATAAAATTTCATGAGCTTACGTTGTTTCGCTATGTAATTAAAGGAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGAAGGCCAGTTTACTGCAGAGATAGGTATTATCGTGCATTGGCCGGTGGACAGTACTGCAAATGGGAAGACTTAGTTAAATAAGAGGATATATATAAGTGAAGAAAGCTACAGTTAAATTCTGTGATTGCTCAAAAGATCTGTACAATTGAGCCTCTTCTTATAATTTTAACGAAGAAATTTTGATGTTTTATGCATTAGATAATGCGCATGCAAAG-AACAAAAGAAAGAGAATC</genome_strand>
        <mrna_strand>CAAGTACAGGGACTC-TTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTTATCAGCAAGTTATACCTTATGAAGAGACCGGATGGTATGATGGACAGATGTGGGTGAAGCCCCGCTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTAGCTCGGGATAGGCTGTTGGGCTCTTATAAG.................................................................................................................GTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTACTAGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCGATACTTTCACAACAAAAGAAAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAG.............................................................................GAAAGAAGAACTGTTACGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTGGCTAAAGCTGCTGCTGAAGCAGCTGATGGAAGGCCAGTTTACTGCAGAGATAGGTATTATCGTGCATTGGCCGGTGGTCAGTACTGCAAATGGGAAGACTTGGTTAAATAAGAGG--ATATATAAGTGAAGAAAGCTACAGTTAAATTCTATGATTGCTCAAAAGATCTGTACAATTGAGCCTCTTCTTATAATTTTAAAGAAGAAATTTTGATGTTTTACGCATTAGATAATGTGTATGCAAAGAAAAAAAAGAAAGAGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E738415" ref_strand="+" ref_description="SGN-E738415 [LC13CC10]">
      <seq>agatatttatctgggatggagctatgttggagataggcttttatcagcagttataccttatgaagagactggatggtatgatgggcagatgtgggtgaagcccccagagatcttagctcgggataggctgttgggatcttataaggtgaaaccagtcattaaaatgctgaagcaaacgctagttggaacaggggctttgcttgttgcagcagtctcattattcatatttgcaacaccagtagaagattttttccgcaatactttcacaacaaacgagaactcattgagttccacctcaacaaacagcacaaataaactaggcatcaggaaagaagaactgttgcgcttgccactggaagtcaaggaggacgatgatctagcaaaagctgccgctgaagcagctgatggaaggccagtttactgcagagataggtattatcgtgcattggccggtggacagtactgcaaatgggaagacttagttaaataagaggatatatataagtgaagaaagctacagttaaattctgtgattgctcaaaagatctgtacaattgagcctcttcttataattttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="48357" stop="50559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48478" g_stop="48489" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="0.833"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48490" i_stop="48657" i_length="168">
            <donor d_prob="0.831" d_score="0.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48658" g_stop="48753" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="109" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48754" i_stop="49592" i_length="839">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49593" g_stop="49628" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="145" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49629" i_stop="49741" i_length="113">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.334" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49742" g_stop="49923" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="327" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49924" i_stop="50000" i_length="77">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50001" g_stop="50259" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="586" r_length="259" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E738415" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48478" e_stop="48489"/>
          <exon e_start="48658" e_stop="48753"/>
          <exon e_start="49593" e_stop="49628"/>
          <exon e_start="49742" e_stop="49923"/>
          <exon e_start="50001" e_stop="50259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGA-ATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAGGTTAGTGGTCTTTCCTTTGCATACTTATTTAACAGGTTCTTTCTCTTTGCTTCCTCTGTTCCTCCTCATTCCCACAGTAGGAAAATATTGCCAGCTTCAAAATGGATAAATTAGCTTCAATCCAGTTCACTAAAATAGGTCATTTATACTAGTTACATCAAGCACATCTAAGTAAAGTAAGTCAAGTTGAACTCTTTTGTTAAAAAAAGAAGGTTAACAATATGAACTTTAATCATTGACAAACTGAATCTAACAAGTGCTCATGGATATGAAGAATACATAGCTAGCAACAAGGGGGAAATGGTGTAATATTGCTTGACAAGAATTGTATCACATAATAGATAAGAGCAAGCGCCCAGAGCCCTAACGACTAACAGTGAGGTGAAAATGGTCCAATATAGCATGAAATGGACTTAAAATTTGGTATCACAAATAAAACGCGGGAAATGAAGCTACATGTGAAAGCAATAAGTTGTACTTCCTTGTGTTGGTTAAATCATCAGTCCTTGCACAATACCCTTTTCTTCTTAGCACAAACAGCTATACTAAAGATTTCAATAAAATAGGTTCTTACTTTTCATGGTATAGAAATGTAGTTATCTTTCCGTGAAACTTTGAGCAACAGATCTTCTAGAAAGTAATAGCATTATCTTTTACAATAACACTACATGATGGAACAACGTCTATACATGAAGCTAATATTAGTTCCGCACTTGTAATAATTCATGCTCTAAAAGTCTATAGCCACCTGCACTTCTTGAAAAATTTATCAGAATCCAAGCTCTAAAAGTCTGTAATGATGTTGCACGTATGACATTTAATGTGATTATTCCTTGCAGATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAGGTACCAGATTGATCTATAAAATTCATCAGCTGGTTACATCATATTCTAACTGTCAATAGAGTAGATCTTTCCTATTACGAGCTTGACAAAGCTGAAAGAATTTATTTACCTAGGTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAGGTAATTCTATTGAAAACTTAAGAAGTACAATACTATAAAATTTCATGAGCTTACGTTGTTTCGCTATGTAATTAAAGGAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGAAGGCCAGTTTACTGCAGAGATAGGTATTATCGTGCATTGGCCGGTGGACAGTACTGCAAATGGGAAGACTTAGTTAAATAAGAGGATATATATAAGTGAAGAAAGCTACAGTTAAATTCTGTGATTGCTCAAAAGATCTGTACAATTGAGCCTCTTCTTATAATTTTAACGAAGAAA</genome_strand>
        <mrna_strand>AGATATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAG.................................................................................................................GTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAG.............................................................................GAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGAAGGCCAGTTTACTGCAGAGATAGGTATTATCGTGCATTGGCCGGTGGACAGTACTGCAAATGGGAAGACTTAGTTAAATAAGAGGATATATATAAGTGAAGAAAGCTACAGTTAAATTCTGTGATTGCTCAAAAGATCTGTACAATTGAGCCTCTTCTTATAATTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E740199" ref_strand="+" ref_description="SGN-E740199 [LC20BH04]">
      <seq>agattttatctgggatggagctatgttggagataggcttttatcagcagttataccttatgaagagactggatggtatgatgggcagatgtgggtgaagcccccagagatcttagctcgggataggctgttgggatcttataaggtgaaaccagtcattaaaatgctgaagcaaacgctagttggaacaggggctttgcttgttgcagcagtctcattattcatatttgcaacaccagtagaagattttttccgcaatactttcacaacaaacgagaactcattgagttccacctcaacaaacagcacaaataaactaggcatcaggaaagaagaactgttgcgcttgccactggaagtcaaggaggacgatgatctagcaaaagctgccgctgaagcagctgatggaaggccagtttactgcagagataggtattatcgtgcattggccggtggacagtactgcaaatgggaagacttagttaaataagaggatatatataagtgaagaaagctacagttaaattctgtgattgctcaaaagatctgtacaattgagcctcttcttataattttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="48357" stop="50559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48478" g_stop="48489" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48490" i_stop="48657" i_length="168">
            <donor d_prob="0.831" d_score="0.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48658" g_stop="48753" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="108" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48754" i_stop="49592" i_length="839">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49593" g_stop="49628" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="144" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49629" i_stop="49741" i_length="113">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.334" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49742" g_stop="49923" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="326" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49924" i_stop="50000" i_length="77">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50001" g_stop="50259" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="585" r_length="259" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E740199" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48478" e_stop="48489"/>
          <exon e_start="48658" e_stop="48753"/>
          <exon e_start="49593" e_stop="49628"/>
          <exon e_start="49742" e_stop="49923"/>
          <exon e_start="50001" e_stop="50259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAGGTTAGTGGTCTTTCCTTTGCATACTTATTTAACAGGTTCTTTCTCTTTGCTTCCTCTGTTCCTCCTCATTCCCACAGTAGGAAAATATTGCCAGCTTCAAAATGGATAAATTAGCTTCAATCCAGTTCACTAAAATAGGTCATTTATACTAGTTACATCAAGCACATCTAAGTAAAGTAAGTCAAGTTGAACTCTTTTGTTAAAAAAAGAAGGTTAACAATATGAACTTTAATCATTGACAAACTGAATCTAACAAGTGCTCATGGATATGAAGAATACATAGCTAGCAACAAGGGGGAAATGGTGTAATATTGCTTGACAAGAATTGTATCACATAATAGATAAGAGCAAGCGCCCAGAGCCCTAACGACTAACAGTGAGGTGAAAATGGTCCAATATAGCATGAAATGGACTTAAAATTTGGTATCACAAATAAAACGCGGGAAATGAAGCTACATGTGAAAGCAATAAGTTGTACTTCCTTGTGTTGGTTAAATCATCAGTCCTTGCACAATACCCTTTTCTTCTTAGCACAAACAGCTATACTAAAGATTTCAATAAAATAGGTTCTTACTTTTCATGGTATAGAAATGTAGTTATCTTTCCGTGAAACTTTGAGCAACAGATCTTCTAGAAAGTAATAGCATTATCTTTTACAATAACACTACATGATGGAACAACGTCTATACATGAAGCTAATATTAGTTCCGCACTTGTAATAATTCATGCTCTAAAAGTCTATAGCCACCTGCACTTCTTGAAAAATTTATCAGAATCCAAGCTCTAAAAGTCTGTAATGATGTTGCACGTATGACATTTAATGTGATTATTCCTTGCAGATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAGGTACCAGATTGATCTATAAAATTCATCAGCTGGTTACATCATATTCTAACTGTCAATAGAGTAGATCTTTCCTATTACGAGCTTGACAAAGCTGAAAGAATTTATTTACCTAGGTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAGGTAATTCTATTGAAAACTTAAGAAGTACAATACTATAAAATTTCATGAGCTTACGTTGTTTCGCTATGTAATTAAAGGAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGAAGGCCAGTTTACTGCAGAGATAGGTATTATCGTGCATTGGCCGGTGGACAGTACTGCAAATGGGAAGACTTAGTTAAATAAGAGGATATATATAAGTGAAGAAAGCTACAGTTAAATTCTGTGATTGCTCAAAAGATCTGTACAATTGAGCCTCTTCTTATAATTTTAACGAAGAAA</genome_strand>
        <mrna_strand>AGATTTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAG.................................................................................................................GTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAG.............................................................................GAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGAAGGCCAGTTTACTGCAGAGATAGGTATTATCGTGCATTGGCCGGTGGACAGTACTGCAAATGGGAAGACTTAGTTAAATAAGAGGATATATATAAGTGAAGAAAGCTACAGTTAAATTCTGTGATTGCTCAAAAGATCTGTACAATTGAGCCTCTTCTTATAATTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733301" ref_strand="+" ref_description="SGN-E733301 [LB04CA09]">
      <seq>cctccagagatcttagctcgggataggctgttgggatcttataaggtgaaaccagtcattaaaatgctgaagcaaacgctagttggaacaggggctttgcttgttgcagcagtctcattattcatatttgcaacaccagtagaagattttttccgcaatactttcacaacaaacgagaactcattgagttccacctcaacaaacagcacaaataaactaggcatcaggaaagaagaactgttgcgcttgccactggaagtcaaggaggacgatgatctagcaaaagctgccgctgaagcagctgatggaaggccagtttactgcagagataggtattatcgtgcattggccggtggacagtactgcaaatgggaagacttagttaaataagaggatatatataagtgaagaaagctacagttaaattctgtgattgctcaaaagatctgtacaattgagcctcttcttataattttaacgaagaaattttgatgttttatgcattanaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="49291" stop="50584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49593" g_stop="49628" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="45" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49629" i_stop="49741" i_length="113">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.334" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49742" g_stop="49923" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="227" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49924" i_stop="50000" i_length="77">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50001" g_stop="50280" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="507" r_length="280" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="508" polyA_stop="525"/>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E733301" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49593" e_stop="49628"/>
          <exon e_start="49742" e_stop="49923"/>
          <exon e_start="50001" e_stop="50280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAGGTACCAGATTGATCTATAAAATTCATCAGCTGGTTACATCATATTCTAACTGTCAATAGAGTAGATCTTTCCTATTACGAGCTTGACAAAGCTGAAAGAATTTATTTACCTAGGTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAGGTAATTCTATTGAAAACTTAAGAAGTACAATACTATAAAATTTCATGAGCTTACGTTGTTTCGCTATGTAATTAAAGGAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGAAGGCCAGTTTACTGCAGAGATAGGTATTATCGTGCATTGGCCGGTGGACAGTACTGCAAATGGGAAGACTTAGTTAAATAAGAGGATATATATAAGTGAAGAAAGCTACAGTTAAATTCTGTGATTGCTCAAAAGATCTGTACAATTGAGCCTCTTCTTATAATTTTAACGAAGAAATTTTGATGTTTTATGCATTAG</genome_strand>
        <mrna_strand>ATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAG.................................................................................................................GTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAG.............................................................................GAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGAAGGCCAGTTTACTGCAGAGATAGGTATTATCGTGCATTGGCCGGTGGACAGTACTGCAAATGGGAAGACTTAGTTAAATAAGAGGATATATATAAGTGAAGAAAGCTACAGTTAAATTCTGTGATTGCTCAAAAGATCTGTACAATTGAGCCTCTTCTTATAATTTTAACGAAGAAATTTTGATGTTTTATGCATTAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E222411" ref_strand="+" ref_description="SGN-E222411 [cLEL-16-O11](-)">
      <seq>agtctcattattcatatttgcaacaccagtagaagattttttccgcaatactttcacaacaaacgagaactcattgagttccacctcaacaaacagcacaaataaactaggcatcaggaaagaagaactgttgcgcttgcccctggaagtcaaggaggacgatgatctagcaaaagctgccgctgaagcagctgatggaaggccagtttactgcagagataggtattatcgtgcattggccggtggacagtactgcaaatgggaagacttagttaaataagaggatatatataagtgaagaaagctccagttaaattctgtgattgctcaaaagatctgtacaattgagcctcttcttataattttaacgaagaaattttgatgttttatgcattagataatgggcatgcaaagaccaaaagaaagagaatccccccccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="49507" stop="50615"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49807" g_stop="49923" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49924" i_stop="50000" i_length="77">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50001" g_stop="50315" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="432" r_length="315" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="440" polyA_stop="477"/>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E222411" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49807" e_stop="49923"/>
          <exon e_start="50001" e_stop="50315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAGGTAATTCTATTGAAAACTTAAGAAGTACAATACTATAAAATTTCATGAGCTTACGTTGTTTCGCTATGTAATTAAAGGAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGAAGGCCAGTTTACTGCAGAGATAGGTATTATCGTGCATTGGCCGGTGGACAGTACTGCAAATGGGAAGACTTAGTTAAATAAGAGGATATATATAAGTGAAGAAAGCTACAGTTAAATTCTGTGATTGCTCAAAAGATCTGTACAATTGAGCCTCTTCTTATAATTTTAACGAAGAAATTTTGATGTTTTATGCATTAGATAATGCGCATGCAAAGAACAAAAGAAAGAGAATC</genome_strand>
        <mrna_strand>AGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAG.............................................................................GAAAGAAGAACTGTTGCGCTTGCCCCTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGAAGGCCAGTTTACTGCAGAGATAGGTATTATCGTGCATTGGCCGGTGGACAGTACTGCAAATGGGAAGACTTAGTTAAATAAGAGGATATATATAAGTGAAGAAAGCTCCAGTTAAATTCTGTGATTGCTCAAAAGATCTGTACAATTGAGCCTCTTCTTATAATTTTAACGAAGAAATTTTGATGTTTTATGCATTAGATAATGGGCATGCAAAGACCAAAAGAAAGAGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E222654" ref_strand="+" ref_description="SGN-E222654 [cLEL-16-O11](-)">
      <seq>caggaaagaagaactgttgcgcttgcccctggaagtcaaggaggacgttgttctagcaaaagctgccgcttaagcagttgatggaaggccagtttactgcagagataggtattatcgtgcattggccggtggccagtactgcaaatgggaagacttagtttaataagaggatatatataagtgaagaaagctccagttaaattctgtgattgctcaaaagatctggacaattgagcctcttcttataattttaacgaagaaattttgatgttttatgcattagataatgggcatgcaaagaacaaaagaaagagaatcatacccccaaaaaaaaaaaaaaaaaccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="49699" stop="50626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49921" g_stop="49923" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49924" i_stop="50000" i_length="77">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50001" g_stop="50325" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="328" r_length="325" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="329" polyA_stop="344"/>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E222654" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49921" e_stop="49923"/>
          <exon e_start="50001" e_stop="50325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGTAATTCTATTGAAAACTTAAGAAGTACAATACTATAAAATTTCATGAGCTTACGTTGTTTCGCTATGTAATTAAAGGAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGAAGGCCAGTTTACTGCAGAGATAGGTATTATCGTGCATTGGCCGGTGGACAGTACTGCAAATGGGAAGACTTAGTTAAATAAGAGGATATATATAAGTGAAGAAAGCTACAGTTAAATTCTGTGATTGCTCAAAAGATCTGTACAATTGAGCCTCTTCTTATAATTTTAACGAAGAAATTTTGATGTTTTATGCATTAGATAATGCGCATGCAAAGAACAAAAGAAAGAGAATCATAACCCAAA</genome_strand>
        <mrna_strand>CAG.............................................................................GAAAGAAGAACTGTTGCGCTTGCCCCTGGAAGTCAAGGAGGACGTTGTTCTAGCAAAAGCTGCCGCTTAAGCAGTTGATGGAAGGCCAGTTTACTGCAGAGATAGGTATTATCGTGCATTGGCCGGTGGCCAGTACTGCAAATGGGAAGACTTAGTTTAATAAGAGGATATATATAAGTGAAGAAAGCTCCAGTTAAATTCTGTGATTGCTCAAAAGATCTGGACAATTGAGCCTCTTCTTATAATTTTAACGAAGAAATTTTGATGTTTTATGCATTAGATAATGGGCATGCAAAGAACAAAAGAAAGAGAATCATACCCCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E253292" ref_strand="-" ref_description="SGN-E253292 [cLEG-26-M8]">
      <seq>tatcccaactttcaagtttggttttttggttagagttcgttaacaggcaaaaaaaagcttaatccgaatgatggcaagaattatatagatatataatgatattagttagtaaaccaactaccaaatgtaggggtaatttttttttcttttttgaatattaagttgtggtgcatagtgtttcatccttaactaaagattttatgttcgagctcaagtatgaaaaaaaattttgttgggagcatcccctcgaatggattttacaaagcgcaattcaaattcgatcgaagctccaatacggattttgaacactttggccgaaaaaaaaagctttttgaaaattttctttctttctttgtaggatacatgcaagaaaatatgtatcgccagttttctctttaaatgtcctattgattgtagttaccttgaagattttgtacaaggctccatttgggaatattttgcaaattatcttatcatgtttgttatataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="55745" stop="54656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55445" g_stop="54957" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="489" r_length="489" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="490" polyA_stop="527"/>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E253292" ref_strand="-">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253292" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="55445" e_stop="54957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCACAACTTTCAAGTTTGGTTTTTTGGTTAGAGTTCGTTAACAGGCAAAAAGAAGCTTAATCCGAATGATGGCAAGAATTATATAGATATATAATGATATTAGTTAGTAAACCAACTACCAAATGTATGCGTAATTTTTTTTTCTTTTTTGTATATTAAGTTGTGGTGCATAGTGTTTCATCCTTAACTAGAGATTTTATGTTCGAGCTCAAGTATGAAAGAAAATTTTGTTGGGAGCATCACCTCGAATGGATCTTACAAAGCGCAATTCAAATTCGATCGAAGCTCCAATACGGATTTTGAACACTTTGGCCGAAAAAAAAAGCTTTTTGGATATTTTCTTTCTTTCTTTGTAGGATACATGCAAGAAAATATGTATCGACAGTTTTCTCTTTATATGTCCTATTGATTGTAGTTACCTTGAAGATTTTGTACAAGGCTCCATTTGGGAATATTTTGCAAATTATCTTATCATGTTTGTTATATA</genome_strand>
        <mrna_strand>TATCCCAACTTTCAAGTTTGGTTTTTTGGTTAGAGTTCGTTAACAGGCAAAAAAAAGCTTAATCCGAATGATGGCAAGAATTATATAGATATATAATGATATTAGTTAGTAAACCAACTACCAAATGTAGGGGTAATTTTTTTTTCTTTTTTGAATATTAAGTTGTGGTGCATAGTGTTTCATCCTTAACTAAAGATTTTATGTTCGAGCTCAAGTATGAAAAAAAATTTTGTTGGGAGCATCCCCTCGAATGGATTTTACAAAGCGCAATTCAAATTCGATCGAAGCTCCAATACGGATTTTGAACACTTTGGCCGAAAAAAAAAGCTTTTTGAAAATTTTCTTTCTTTCTTTGTAGGATACATGCAAGAAAATATGTATCGCCAGTTTTCTCTTTAAATGTCCTATTGATTGTAGTTACCTTGAAGATTTTGTACAAGGCTCCATTTGGGAATATTTTGCAAATTATCTTATCATGTTTGTTATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E554213" ref_strand="+" ref_description="SGN-E554213 [cTSC-3-J16]">
      <seq>gcctttttggttatgcttcaggaactgctcgtggaatggcttatcgtgccagagttgccgtctacaaggtttgctggcttgggaaatgctttggccccgacatattggcaggtatggacaaagccattgatgataatgttaatgtgctttcattatcacttggtggagagcattttgatttctacagcgacgatgttgcaattggagcatttgctgcaatggagaagggtattatggtttcttgctctgctggaaatgctggacccaatcaattcagtttggctaaccaagcaccttggatcaccaccgtgggtgccggaacagttgaccgtgattttccagcatatgtaagccttggcaatggtaaaaatttctccggtgtttcactttacgcgggtgatccattacccagtgggatgcttcccttggtgtatgcaggtaatgccagcaatgcaaccaatggaaatctctgtataatgggaaccttaattcctgagaaagttaaaggcaaaattgtgctgtgtgacggaggggttaacgtcagagctgaaaagggttatgtggtaaaataaaaaaatggagccgggatgatttttgctaacacaaatgggctggggctactggctgacgcccatttacttccagcggcggctgtgggtcaattagatggcgatgaaatcaagaagtatataacatcagatcctaatccaacggccacgattctttttggaggacaatggtaggagtccaaccagcaccgattcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="57104" stop="58471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57404" g_stop="58171" g_length="768"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="767" r_length="767" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E554213" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57404" e_stop="58171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTTTTGGTTATGCTTCAGGAACTGCTCGTGGAATGGCTTATCGTGCCAGAGTTGCCGTCTACAAGGTTTGCTGGCTTGGGAAATGCTTTGGCCCCGACATATTGGCAGGTATGGACAAAGCCATTGATGATAATGTTAATGTGCTTTCATTATCACTTGGTGGAGAGCATTTTGATTTCTACAGCGACGATGTTGCAATTGGAGCATTTGCTGCAATGGAGAAGGGTATTATGGTTTCTTGCTCTGCTGGAAATGCTGGACCCAATCAATTCAGTTTGGCTAACCAAGCACCTTGGATCACCACCGTGGGTGCCGGAACAGTTGACCGTGATTTTCCAGCATATGTAAGCCTTGGCAATGGTAAAAATTTCTCCGGTGTTTCACTTTACGCGGGTGATCCATTACCCAGTGGGATGCTTCCCTTGGTGTATGCAGGTAATGCCAGCAATGCAACCAATGGAAATCTCTGTATAATGGGAACCTTAATTCCTGAGAAAGTTAAAGGCAAAATTGTGCTGTGTGACGGAGGGGTTAACGTCAGAGCTGAAAAGGGTTATGTGGTAAAATCAGCCGGTGGAGCCGGCATGATTTTTGCTAACACAAATGGGCTGGGGCTACTGGCTGACGCCCATTTACTTCCAGCGGCGGCTGTGGGTCAATTAGATGGCGATGAAATCAAGAAGTATATAACATCAGATCCTAATCCAACGGCCACGATTCTTTTTGGAGGAACAATGGTAGGAGTCCAACCAGCACCGATTCTTG</genome_strand>
        <mrna_strand>GCCTTTTTGGTTATGCTTCAGGAACTGCTCGTGGAATGGCTTATCGTGCCAGAGTTGCCGTCTACAAGGTTTGCTGGCTTGGGAAATGCTTTGGCCCCGACATATTGGCAGGTATGGACAAAGCCATTGATGATAATGTTAATGTGCTTTCATTATCACTTGGTGGAGAGCATTTTGATTTCTACAGCGACGATGTTGCAATTGGAGCATTTGCTGCAATGGAGAAGGGTATTATGGTTTCTTGCTCTGCTGGAAATGCTGGACCCAATCAATTCAGTTTGGCTAACCAAGCACCTTGGATCACCACCGTGGGTGCCGGAACAGTTGACCGTGATTTTCCAGCATATGTAAGCCTTGGCAATGGTAAAAATTTCTCCGGTGTTTCACTTTACGCGGGTGATCCATTACCCAGTGGGATGCTTCCCTTGGTGTATGCAGGTAATGCCAGCAATGCAACCAATGGAAATCTCTGTATAATGGGAACCTTAATTCCTGAGAAAGTTAAAGGCAAAATTGTGCTGTGTGACGGAGGGGTTAACGTCAGAGCTGAAAAGGGTTATGTGGTAAAATAAAAAAATGGAGCCGGGATGATTTTTGCTAACACAAATGGGCTGGGGCTACTGGCTGACGCCCATTTACTTCCAGCGGCGGCTGTGGGTCAATTAGATGGCGATGAAATCAAGAAGTATATAACATCAGATCCTAATCCAACGGCCACGATTCTTTTTGGAGG-ACAATGGTAGGAGTCCAACCAGCACCGATTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E553607" ref_strand="+" ref_description="SGN-E553607 [cTSC-1-K17]">
      <seq>atgctggacccaatcaattcagtttggctaaccaagcaccttggatcaccaccgtgggtgccggaacagttgaccgtgattttccagcatatgtaagccttggcaatggtaaaaatttctccggtgtttcactttacgcgggtgatccattacccagtgggatgcttcccttggtgtatgcaggtaatgccagcaatgcaaccaatggaaatctctgtataatgggaaccttaattcctgagaaagttaaaggcaaaattgtgctgtgtgacggaggggttaacgtcagagctgaaaagggttatgtggtaaaatcagccggtggagccggcatgatttttgctaacacaaatgggctggggctactggctgacgcccatttacttccagcggcggctgtgggtcaattagatggcgatgaaatcaagaagtatataacatcagatcctaatccaacggccacgattctttttggaggaacaatggtaggagtccaaccagcaccgattcttgcagcgttcagttccagaggcccaaattccatcacgccggagatacttaagccggatatcatcgcgccaggtgtcaatattctggccggttggagcggtgcagtcggtcctacggggttgcctgaggacgatagacgggtcgagttcaacattatctcaggcacatccatgtcgtgtccacacgtgagtggcttagcggctttgctcaaaggagtccacccagaatggagccccgccgccattcgttcggcgctcatgaccaccgcttacaccacctacaggaacggcggagcactactagacgtagctaccggaaaacatctacacctttcggtcacggcgctgggcacgtggatcccgtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="57359" stop="58835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57659" g_stop="58535" g_length="877"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="876" r_length="876" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E553607" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>877</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553607" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57659" e_stop="58535"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTGGACCCAATCAATTCAGTTTGGCTAACCAAGCACCTTGGATCACCACCGTGGGTGCCGGAACAGTTGACCGTGATTTTCCAGCATATGTAAGCCTTGGCAATGGTAAAAATTTCTCCGGTGTTTCACTTTACGCGGGTGATCCATTACCCAGTGGGATGCTTCCCTTGGTGTATGCAGGTAATGCCAGCAATGCAACCAATGGAAATCTCTGTATAATGGGAACCTTAATTCCTGAGAAAGTTAAAGGCAAAATTGTGCTGTGTGACGGAGGGGTTAACGTCAGAGCTGAAAAGGGTTATGTGGTAAAATCAGCCGGTGGAGCCGGCATGATTTTTGCTAACACAAATGGGCTGGGGCTACTGGCTGACGCCCATTTACTTCCAGCGGCGGCTGTGGGTCAATTAGATGGCGATGAAATCAAGAAGTATATAACATCAGATCCTAATCCAACGGCCACGATTCTTTTTGGAGGAACAATGGTAGGAGTCCAACCAGCACCGATTCTTGCAGCGTTCAGTTCCAGAGGCCCAAATTCCATCACGCCGGAGATACTTAAGCCGGATATCATCGCGCCAGGTGTCAATATTCTGGCCGGTTGGAGCGGTGCAGTCGGTCCTACGGGGTTGCCTGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGTGGCTTAGCGGCTTTGCTCAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCACCGCTTACACCACCTACAGGAACGGCGGAGCACTACTAGACGTAGCTACCGGAAAACCATCTACACCTTTCGGTCACGGCGCTGGGCACGTGGATCCCGTTTC</genome_strand>
        <mrna_strand>ATGCTGGACCCAATCAATTCAGTTTGGCTAACCAAGCACCTTGGATCACCACCGTGGGTGCCGGAACAGTTGACCGTGATTTTCCAGCATATGTAAGCCTTGGCAATGGTAAAAATTTCTCCGGTGTTTCACTTTACGCGGGTGATCCATTACCCAGTGGGATGCTTCCCTTGGTGTATGCAGGTAATGCCAGCAATGCAACCAATGGAAATCTCTGTATAATGGGAACCTTAATTCCTGAGAAAGTTAAAGGCAAAATTGTGCTGTGTGACGGAGGGGTTAACGTCAGAGCTGAAAAGGGTTATGTGGTAAAATCAGCCGGTGGAGCCGGCATGATTTTTGCTAACACAAATGGGCTGGGGCTACTGGCTGACGCCCATTTACTTCCAGCGGCGGCTGTGGGTCAATTAGATGGCGATGAAATCAAGAAGTATATAACATCAGATCCTAATCCAACGGCCACGATTCTTTTTGGAGGAACAATGGTAGGAGTCCAACCAGCACCGATTCTTGCAGCGTTCAGTTCCAGAGGCCCAAATTCCATCACGCCGGAGATACTTAAGCCGGATATCATCGCGCCAGGTGTCAATATTCTGGCCGGTTGGAGCGGTGCAGTCGGTCCTACGGGGTTGCCTGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGTGGCTTAGCGGCTTTGCTCAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCACCGCTTACACCACCTACAGGAACGGCGGAGCACTACTAGACGTAGCTACCGGAAAA-CATCTACACCTTTCGGTCACGGCGCTGGGCACGTGGATCCCGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E704631" ref_strand="+" ref_description="SGN-E704631 [FA24DC10]">
      <seq>cgtgggtgccggaacagttgaccgtgattttccagcatatgtaagccttggcaatggtaaaaatttctccggtgtttcactttacgcgggtgatccattacccagtgggatgcttcccttggtgtatgcaggtaatgccagcaatgcaaccaatggaaatctctgtataatgggaaccttaattcctgagaaagttaaaggcaaaattgtgctgtgtgacggaggggttaacgtcagagctgaaaagggttatgtggtaaaatcagccggtggagccggcatgatttttgctaacacaaatgggctggggctactggctgacgcccatttacttccagcggcggctgtgggtcaattagatggcgatgaaatcaagaagtatataacatcagatcctaatccaacggccacgattctttttggaggaacaatggtaggagtccaaccagcaccgattcttgcagcgttcagttccagaggcccaaattccatcacgccggagatacttaagccggatatcatcgcgccaggtgtcaatattctggccggttggagcggtgcagtcggtcctacggcgtcgcctgaggacgatagacgggtcgagttcaacattatctcaggcacatccatgtcgtgtccacacgtgagtggcttagcgccttcgctcaaaggagtccacccagaatggagccccgccgccattcgttcggcgctcatgaccaccgcttacaccacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="57411" stop="58747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57711" g_stop="58447" g_length="737"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="737" r_length="737" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E704631" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57711" e_stop="58447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGGGTGCCGGAACAGTTGACCGTGATTTTCCAGCATATGTAAGCCTTGGCAATGGTAAAAATTTCTCCGGTGTTTCACTTTACGCGGGTGATCCATTACCCAGTGGGATGCTTCCCTTGGTGTATGCAGGTAATGCCAGCAATGCAACCAATGGAAATCTCTGTATAATGGGAACCTTAATTCCTGAGAAAGTTAAAGGCAAAATTGTGCTGTGTGACGGAGGGGTTAACGTCAGAGCTGAAAAGGGTTATGTGGTAAAATCAGCCGGTGGAGCCGGCATGATTTTTGCTAACACAAATGGGCTGGGGCTACTGGCTGACGCCCATTTACTTCCAGCGGCGGCTGTGGGTCAATTAGATGGCGATGAAATCAAGAAGTATATAACATCAGATCCTAATCCAACGGCCACGATTCTTTTTGGAGGAACAATGGTAGGAGTCCAACCAGCACCGATTCTTGCAGCGTTCAGTTCCAGAGGCCCAAATTCCATCACGCCGGAGATACTTAAGCCGGATATCATCGCGCCAGGTGTCAATATTCTGGCCGGTTGGAGCGGTGCAGTCGGTCCTACGGGGTTGCCTGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGTGGCTTAGCGGCTTTGCTCAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCACCGCTTACACCACCT</genome_strand>
        <mrna_strand>CGTGGGTGCCGGAACAGTTGACCGTGATTTTCCAGCATATGTAAGCCTTGGCAATGGTAAAAATTTCTCCGGTGTTTCACTTTACGCGGGTGATCCATTACCCAGTGGGATGCTTCCCTTGGTGTATGCAGGTAATGCCAGCAATGCAACCAATGGAAATCTCTGTATAATGGGAACCTTAATTCCTGAGAAAGTTAAAGGCAAAATTGTGCTGTGTGACGGAGGGGTTAACGTCAGAGCTGAAAAGGGTTATGTGGTAAAATCAGCCGGTGGAGCCGGCATGATTTTTGCTAACACAAATGGGCTGGGGCTACTGGCTGACGCCCATTTACTTCCAGCGGCGGCTGTGGGTCAATTAGATGGCGATGAAATCAAGAAGTATATAACATCAGATCCTAATCCAACGGCCACGATTCTTTTTGGAGGAACAATGGTAGGAGTCCAACCAGCACCGATTCTTGCAGCGTTCAGTTCCAGAGGCCCAAATTCCATCACGCCGGAGATACTTAAGCCGGATATCATCGCGCCAGGTGTCAATATTCTGGCCGGTTGGAGCGGTGCAGTCGGTCCTACGGCGTCGCCTGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGTGGCTTAGCGCCTTCGCTCAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCACCGCTTACACCACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E704338" ref_strand="+" ref_description="SGN-E704338 [FA24AA12]">
      <seq>agggagaaagttaaaggcaaaattgtgctgtgtgacggaggggttaacgtcagagctgaaaagggttatgtggtaaaatcagccggtggagccggcatgatttttgctaacacaaatgggctggggctactggctgacgcccatttacttccagcggcggctgtgggtcaattagatggcgatgaaatcaagaagtatataacatcagatcctaatccaacggccacgattctttttggaggaacaatggtaggagtccaaccagcaccgattcttgcagcgttcagttccagaggcccaaattccatcacgccggagatacttaagccggatatcatcgcgccaggtgtcaatattctggccggttggagcggtgcagtcggtcctacggggttgcctgaggacgatagacgggtcgagttcaacattatctcaggcacatccatgtcgtgtccacacgtgagtggcttagcggctttgctcaaaggagtccacccagaatggagccccgccgccattcgttcggcgctcatgaccaccgcttacaccacctacaggaacggcggagcactactagacgtagctaccggaaaaccatctacacctttcggtcacggcgctgggcacgtggatcccgtttcagcggtgaacccaggtcttgtttacgacataaacgccgatgattacctcaatttcctgtgtgcattgaaatacagtccatcacaaatcaatatcatagcaagaagaaacttcacatgtgattcaangcaaatatacagcgtcacagatttgaattacccttcgttttcagttgcattccctgccgataccggttcaaacacaatcagatacagccggacactgactaatgttggaccgtctggaacataccaagttgctgttactttgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="57598" stop="59105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57895" g_stop="58805" g_length="911"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="911" r_length="911" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E704338" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>911</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57895" e_stop="58805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGAGAAAGTTAAAGGCAAAATTGTGCTGTGTGACGGAGGGGTTAACGTCAGAGCTGAAAAGGGTTATGTGGTAAAATCAGCCGGTGGAGCCGGCATGATTTTTGCTAACACAAATGGGCTGGGGCTACTGGCTGACGCCCATTTACTTCCAGCGGCGGCTGTGGGTCAATTAGATGGCGATGAAATCAAGAAGTATATAACATCAGATCCTAATCCAACGGCCACGATTCTTTTTGGAGGAACAATGGTAGGAGTCCAACCAGCACCGATTCTTGCAGCGTTCAGTTCCAGAGGCCCAAATTCCATCACGCCGGAGATACTTAAGCCGGATATCATCGCGCCAGGTGTCAATATTCTGGCCGGTTGGAGCGGTGCAGTCGGTCCTACGGGGTTGCCTGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGTGGCTTAGCGGCTTTGCTCAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCACCGCTTACACCACCTACAGGAACGGCGGAGCACTACTAGACGTAGCTACCGGAAAACCATCTACACCTTTCGGTCACGGCGCTGGGCACGTGGATCCCGTTTCAGCGGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCCTGTGTGCATTGAAATACAGTCCATCACAAATCAATATCATAGCAAGAAGAAACTTCACATGTGATTCAAGCAAAATATACAGCGTCACAGATTTGAATTACCCTTCGTTTTCAGTTGCATTCCCTGCCGATACCGGTTCAAACACAATCAGATACAGCCGGACACTGACTAATGTTGGACCGTCTGGAACATACAAAGTTGCTGTTACTTTGCC</genome_strand>
        <mrna_strand>AGGGAGAAAGTTAAAGGCAAAATTGTGCTGTGTGACGGAGGGGTTAACGTCAGAGCTGAAAAGGGTTATGTGGTAAAATCAGCCGGTGGAGCCGGCATGATTTTTGCTAACACAAATGGGCTGGGGCTACTGGCTGACGCCCATTTACTTCCAGCGGCGGCTGTGGGTCAATTAGATGGCGATGAAATCAAGAAGTATATAACATCAGATCCTAATCCAACGGCCACGATTCTTTTTGGAGGAACAATGGTAGGAGTCCAACCAGCACCGATTCTTGCAGCGTTCAGTTCCAGAGGCCCAAATTCCATCACGCCGGAGATACTTAAGCCGGATATCATCGCGCCAGGTGTCAATATTCTGGCCGGTTGGAGCGGTGCAGTCGGTCCTACGGGGTTGCCTGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGTGGCTTAGCGGCTTTGCTCAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCACCGCTTACACCACCTACAGGAACGGCGGAGCACTACTAGACGTAGCTACCGGAAAACCATCTACACCTTTCGGTCACGGCGCTGGGCACGTGGATCCCGTTTCAGCGGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCCTGTGTGCATTGAAATACAGTCCATCACAAATCAATATCATAGCAAGAAGAAACTTCACATGTGATTCAANGCAAATATACAGCGTCACAGATTTGAATTACCCTTCGTTTTCAGTTGCATTCCCTGCCGATACCGGTTCAAACACAATCAGATACAGCCGGACACTGACTAATGTTGGACCGTCTGGAACATACCAAGTTGCTGTTACTTTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E701890" ref_strand="+" ref_description="SGN-E701890 [FA17AH09]">
      <seq>ggcctaacgtcagagctgaaaagggttatgtggtaaaatcagccggtggagccggcatgatttttgctaacacaaatgggctggggctactggctgacgcccatttacttccagcggcggctgtgggtcaattagatggcgatgaaatcaagaagtatataacatcagatcctaatccaacggccacgattctttttggaggaacaatggtaggagtccaaccagcaccgattcttgcagcgttcagttccagaggcccaaattccatcacgccggagatacttaagccggatatcatcgcgccaggtgtcaatattctggccggttggagcggtgcagtcggtcctacggggttgcctgaggacgatagacgggtcgagttcaacattatctcaggcacatccatgtcgtgtccacacgtgagtggcttagcggctttgctcaaaggagtccacccagaatggagccccgccgccattcgttcggcgctcatgaccaccgcttacaccacctacaggaacggcggagcactactagacgtagctaccggaaaaccatctacacctttcggtcacggcgctgggcacgtggatcccgtttcagcggtgaacccaggtcttgtttacgacataaacgccgatgattacctcaatttcctgtgtgcattgaaatacagtccatcacaaatcaatatcatagcaagaagaaacttcacatgtgattcaagcaaaatatacagcgtcacagatttgaattacccttcgttttcagttgcattccctgccgataccggttcaaacacaatcagatacagccggacactgactaatgttggaccgtctggaacatacaaagttgctgttactttgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="57635" stop="59105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57935" g_stop="58805" g_length="871"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="871" r_length="871" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E701890" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>871</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57935" e_stop="58805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTTAACGTCAGAGCTGAAAAGGGTTATGTGGTAAAATCAGCCGGTGGAGCCGGCATGATTTTTGCTAACACAAATGGGCTGGGGCTACTGGCTGACGCCCATTTACTTCCAGCGGCGGCTGTGGGTCAATTAGATGGCGATGAAATCAAGAAGTATATAACATCAGATCCTAATCCAACGGCCACGATTCTTTTTGGAGGAACAATGGTAGGAGTCCAACCAGCACCGATTCTTGCAGCGTTCAGTTCCAGAGGCCCAAATTCCATCACGCCGGAGATACTTAAGCCGGATATCATCGCGCCAGGTGTCAATATTCTGGCCGGTTGGAGCGGTGCAGTCGGTCCTACGGGGTTGCCTGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGTGGCTTAGCGGCTTTGCTCAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCACCGCTTACACCACCTACAGGAACGGCGGAGCACTACTAGACGTAGCTACCGGAAAACCATCTACACCTTTCGGTCACGGCGCTGGGCACGTGGATCCCGTTTCAGCGGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCCTGTGTGCATTGAAATACAGTCCATCACAAATCAATATCATAGCAAGAAGAAACTTCACATGTGATTCAAGCAAAATATACAGCGTCACAGATTTGAATTACCCTTCGTTTTCAGTTGCATTCCCTGCCGATACCGGTTCAAACACAATCAGATACAGCCGGACACTGACTAATGTTGGACCGTCTGGAACATACAAAGTTGCTGTTACTTTGCC</genome_strand>
        <mrna_strand>GGCCTAACGTCAGAGCTGAAAAGGGTTATGTGGTAAAATCAGCCGGTGGAGCCGGCATGATTTTTGCTAACACAAATGGGCTGGGGCTACTGGCTGACGCCCATTTACTTCCAGCGGCGGCTGTGGGTCAATTAGATGGCGATGAAATCAAGAAGTATATAACATCAGATCCTAATCCAACGGCCACGATTCTTTTTGGAGGAACAATGGTAGGAGTCCAACCAGCACCGATTCTTGCAGCGTTCAGTTCCAGAGGCCCAAATTCCATCACGCCGGAGATACTTAAGCCGGATATCATCGCGCCAGGTGTCAATATTCTGGCCGGTTGGAGCGGTGCAGTCGGTCCTACGGGGTTGCCTGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGTGGCTTAGCGGCTTTGCTCAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCACCGCTTACACCACCTACAGGAACGGCGGAGCACTACTAGACGTAGCTACCGGAAAACCATCTACACCTTTCGGTCACGGCGCTGGGCACGTGGATCCCGTTTCAGCGGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCCTGTGTGCATTGAAATACAGTCCATCACAAATCAATATCATAGCAAGAAGAAACTTCACATGTGATTCAAGCAAAATATACAGCGTCACAGATTTGAATTACCCTTCGTTTTCAGTTGCATTCCCTGCCGATACCGGTTCAAACACAATCAGATACAGCCGGACACTGACTAATGTTGGACCGTCTGGAACATACAAAGTTGCTGTTACTTTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E702073" ref_strand="+" ref_description="SGN-E702073 [FA17CH09]">
      <seq>ggttaacgtcagagctgaaaagggttatgtggtaaaatcagccggtggagccggcatgatttttgctaacacaaatgggctggggctactggctgacgcccatttacttccagcggcggctgtgggtcaattacatggcgatgaaatcaagaagtatataacatcatatcctaatccaacggccacgattctttttggaggaacaatggtaggagtccaaccagcaccgattcttgcagcgttcagttccagaggcccaaattccatcacgccggagatacttaagccggatatcatcgcgccaggtgtcaatattctggccggttggagcggcgcagtcggtcctacggggttgcctgaggacgatagacgggtcgagttcaacattatctcaggcacatccatgtcgtgtccacacgtgagtggcttagcggctttgctcaaaggagtccacccagaatggagccccgccgccattcgttcggcgctcatgaccaccgcttacaccacctacaggaacggcggagcactactagacgtagctaccggaaaaccatctacacctttcggtcacggcgctgggcacgtggatcccgtttcagcggtgaacccacgacttgtttacgacataaacgccgatgattacctcaatttcctgtgtgcattgaaatacagtccatccacaatcaatatcctagcaacaagaaacttcacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="57636" stop="58951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57936" g_stop="58651" g_length="716"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="716" r_length="716" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E702073" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57936" e_stop="58651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTAACGTCAGAGCTGAAAAGGGTTATGTGGTAAAATCAGCCGGTGGAGCCGGCATGATTTTTGCTAACACAAATGGGCTGGGGCTACTGGCTGACGCCCATTTACTTCCAGCGGCGGCTGTGGGTCAATTAGATGGCGATGAAATCAAGAAGTATATAACATCAGATCCTAATCCAACGGCCACGATTCTTTTTGGAGGAACAATGGTAGGAGTCCAACCAGCACCGATTCTTGCAGCGTTCAGTTCCAGAGGCCCAAATTCCATCACGCCGGAGATACTTAAGCCGGATATCATCGCGCCAGGTGTCAATATTCTGGCCGGTTGGAGCGGTGCAGTCGGTCCTACGGGGTTGCCTGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGTGGCTTAGCGGCTTTGCTCAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCACCGCTTACACCACCTACAGGAACGGCGGAGCACTACTAGACGTAGCTACCGGAAAACCATCTACACCTTTCGGTCACGGCGCTGGGCACGTGGATCCCGTTTCAGCGGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCCTGTGTGCATTGAAATACAGTCCATCACAAATCAATATCATAGCAAGAAGAAACTTCACAT</genome_strand>
        <mrna_strand>GGTTAACGTCAGAGCTGAAAAGGGTTATGTGGTAAAATCAGCCGGTGGAGCCGGCATGATTTTTGCTAACACAAATGGGCTGGGGCTACTGGCTGACGCCCATTTACTTCCAGCGGCGGCTGTGGGTCAATTACATGGCGATGAAATCAAGAAGTATATAACATCATATCCTAATCCAACGGCCACGATTCTTTTTGGAGGAACAATGGTAGGAGTCCAACCAGCACCGATTCTTGCAGCGTTCAGTTCCAGAGGCCCAAATTCCATCACGCCGGAGATACTTAAGCCGGATATCATCGCGCCAGGTGTCAATATTCTGGCCGGTTGGAGCGGCGCAGTCGGTCCTACGGGGTTGCCTGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGTGGCTTAGCGGCTTTGCTCAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCACCGCTTACACCACCTACAGGAACGGCGGAGCACTACTAGACGTAGCTACCGGAAAACCATCTACACCTTTCGGTCACGGCGCTGGGCACGTGGATCCCGTTTCAGCGGTGAACCCACGACTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCCTGTGTGCATTGAAATACAGTCCATCCACAATCAATATCCTAGCAACAAGAAACTTCACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E705635" ref_strand="+" ref_description="SGN-E705635 [FA27CH04]">
      <seq>ggccggttggagcggtgcagtcggtcctacggggttgcctgaggacgatagacgggtcgagttcaacattatctcaggcacatccatgtcgtgtccacacgtgagtggcttagcggctttgctcaaaggagtccacccagaatggagccccgccgccattcgttcggcgctcatgaccaccgcttacaccacctacaggaacggcggagcactactagacgtagctaccggaaaaccatctacacctttcggtcacggcgctgggcacgtggatcccgtttcagcggtgaacccaggtcttgtttacgacataaacgccgatgattacctcaatttcctgtgtgcattgaaatacagtccatcacaaatcaatatcatagcaagaagaaacttcacatgtgattcaagcaaaatatacagcgtcacagatttgaattacccttcgttttcagttgcattccctgccgataccggttcaaacacaatcagatacagccggacactgactaatgttggaccgtctggaacatacaaagttgctgttactttgcccgatagttccgtggaaattatagttgaacctgaaacagttagttttactcagattaatgagaagatatcgtatagtgtgagttttactgctccatcaaagcccccatctaccaatgtattcggcaaaattgagtggtcagatgggacgcatttggtcactagtccagttgcaatttcttggtcatgaattatatgaacaaattanagagctatatatagctgctatcgatttaatgtaaagttaatcaaagaaatttatgcttcttgctcacagtgcagtgatgtttcgtaccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="57954" stop="59400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58254" g_stop="59108" g_length="855"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="855" r_length="855" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E705635" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>855</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58254" e_stop="59108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCGGTTGGAGCGGTGCAGTCGGTCCTACGGGGTTGCCTGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGTGGCTTAGCGGCTTTGCTCAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCACCGCTTACACCACCTACAGGAACGGCGGAGCACTACTAGACGTAGCTACCGGAAAACCATCTACACCTTTCGGTCACGGCGCTGGGCACGTGGATCCCGTTTCAGCGGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCCTGTGTGCATTGAAATACAGTCCATCACAAATCAATATCATAGCAAGAAGAAACTTCACATGTGATTCAAGCAAAATATACAGCGTCACAGATTTGAATTACCCTTCGTTTTCAGTTGCATTCCCTGCCGATACCGGTTCAAACACAATCAGATACAGCCGGACACTGACTAATGTTGGACCGTCTGGAACATACAAAGTTGCTGTTACTTTGCCCGATAGTTCCGTGGAAATTATAGTTGAACCTGAAACAGTTAGTTTTACTCAGATTAATGAGAAGATATCGTATAGTGTGAGTTTTACTGCTCCATCAAAGCCCCCATCTACCAATGTATTCGGCAAAATTGAGTGGTCAGATGGGACGCATTTGGTCACTAGTCCAGTTGCAATTTCTTGGTCATGAATTATATGAACAAATTAAAGAGCTATATATAGCTGCTATCGATTTAATGTAAAGTTAATCAAAGAAATTTATGCTTCTTGCTCACAGTGCAGTGATGTTTCGTACCAAGTATTGTA</genome_strand>
        <mrna_strand>GGCCGGTTGGAGCGGTGCAGTCGGTCCTACGGGGTTGCCTGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGTGGCTTAGCGGCTTTGCTCAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCACCGCTTACACCACCTACAGGAACGGCGGAGCACTACTAGACGTAGCTACCGGAAAACCATCTACACCTTTCGGTCACGGCGCTGGGCACGTGGATCCCGTTTCAGCGGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCCTGTGTGCATTGAAATACAGTCCATCACAAATCAATATCATAGCAAGAAGAAACTTCACATGTGATTCAAGCAAAATATACAGCGTCACAGATTTGAATTACCCTTCGTTTTCAGTTGCATTCCCTGCCGATACCGGTTCAAACACAATCAGATACAGCCGGACACTGACTAATGTTGGACCGTCTGGAACATACAAAGTTGCTGTTACTTTGCCCGATAGTTCCGTGGAAATTATAGTTGAACCTGAAACAGTTAGTTTTACTCAGATTAATGAGAAGATATCGTATAGTGTGAGTTTTACTGCTCCATCAAAGCCCCCATCTACCAATGTATTCGGCAAAATTGAGTGGTCAGATGGGACGCATTTGGTCACTAGTCCAGTTGCAATTTCTTGGTCATGAATTATATGAACAAATTANAGAGCTATATATAGCTGCTATCGATTTAATGTAAAGTTAATCAAAGAAATTTATGCTTCTTGCTCACAGTGCAGTGATGTTTCGTACCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E705470" ref_strand="+" ref_description="SGN-E705470 [FA27BA04]">
      <seq>ggccggttggagcggagcagtcagtcctacaggggtgcctgaggacgatagacgggtcgagttcaacatgtatctcacgcacatccatgtcgtgtccacacagtgagtggcttagcggctttgctcaaaggagtccacccacaatggagccccgccgccattcattcggcgctcatgacacaccgcttacaccacctacaggaacggcggagcactagctagacgtagctaccggaaaaccatctacacctttcggtcacggcgctgggcacgtggatcccgattcatcggtgaacccaagtcttgtttaccacataaacgccgatgattacctcaatttcctgtgtgcattgaaatacagaccatcacaaatcagtatcatagcgagaagaaacttcacatgtgattcaagcaaaatatacagcgtcacagatttgaattacccttcgttttcagttgcattccctgccgataccggttcaaacacgatcatatacaaccggacactgactaatgttggaccgtctggaacatacaaagttgctgttactttgcccgatagttccgtggaaattataattgaacctgaaacaggtagatttactcaaattaatgagaagatatcgtatagtgtgagttgtactgctccatcgaagcccccatctaccaatgtattcagcaaaattgagtggtcatatgggactcatttggtcactagaccagatgcaatttcttggtcatgaattatatgaacacattaaagagctatatatagctgctatcgatttaatgtgaagttaatcatagaaatctatgcttcttgctcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="57954" stop="59377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58254" g_stop="59077" g_length="824"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="828" r_length="828" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E705470" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>824</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58254" e_stop="59077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCGGTTGGAGCGGTGCAGTCGGTCCTACGGGGTTGCCTGAGGACGATAGACGGGTCGAGTTCAACAT-TATCTCAGGCACATCCATGTCGTGTCCACAC-GTGAGTGGCTTAGCGGCTTTGCTCAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGAC-CACCGCTTACACCACCTACAGGAACGGCGGAGCACTA-CTAGACGTAGCTACCGGAAAACCATCTACACCTTTCGGTCACGGCGCTGGGCACGTGGATCCCGTTTCAGCGGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCCTGTGTGCATTGAAATACAGTCCATCACAAATCAATATCATAGCAAGAAGAAACTTCACATGTGATTCAAGCAAAATATACAGCGTCACAGATTTGAATTACCCTTCGTTTTCAGTTGCATTCCCTGCCGATACCGGTTCAAACACAATCAGATACAGCCGGACACTGACTAATGTTGGACCGTCTGGAACATACAAAGTTGCTGTTACTTTGCCCGATAGTTCCGTGGAAATTATAGTTGAACCTGAAACAGTTAGTTTTACTCAGATTAATGAGAAGATATCGTATAGTGTGAGTTTTACTGCTCCATCAAAGCCCCCATCTACCAATGTATTCGGCAAAATTGAGTGGTCAGATGGGACGCATTTGGTCACTAGTCCAGTTGCAATTTCTTGGTCATGAATTATATGAACAAATTAAAGAGCTATATATAGCTGCTATCGATTTAATGTAAAGTTAATCAAAGAAATTTATGCTTCTTGCTCAC</genome_strand>
        <mrna_strand>GGCCGGTTGGAGCGGAGCAGTCAGTCCTACAGGGGTGCCTGAGGACGATAGACGGGTCGAGTTCAACATGTATCTCACGCACATCCATGTCGTGTCCACACAGTGAGTGGCTTAGCGGCTTTGCTCAAAGGAGTCCACCCACAATGGAGCCCCGCCGCCATTCATTCGGCGCTCATGACACACCGCTTACACCACCTACAGGAACGGCGGAGCACTAGCTAGACGTAGCTACCGGAAAACCATCTACACCTTTCGGTCACGGCGCTGGGCACGTGGATCCCGATTCATCGGTGAACCCAAGTCTTGTTTACCACATAAACGCCGATGATTACCTCAATTTCCTGTGTGCATTGAAATACAGACCATCACAAATCAGTATCATAGCGAGAAGAAACTTCACATGTGATTCAAGCAAAATATACAGCGTCACAGATTTGAATTACCCTTCGTTTTCAGTTGCATTCCCTGCCGATACCGGTTCAAACACGATCATATACAACCGGACACTGACTAATGTTGGACCGTCTGGAACATACAAAGTTGCTGTTACTTTGCCCGATAGTTCCGTGGAAATTATAATTGAACCTGAAACAGGTAGATTTACTCAAATTAATGAGAAGATATCGTATAGTGTGAGTTGTACTGCTCCATCGAAGCCCCCATCTACCAATGTATTCAGCAAAATTGAGTGGTCATATGGGACTCATTTGGTCACTAGACCAGATGCAATTTCTTGGTCATGAATTATATGAACACATTAAAGAGCTATATATAGCTGCTATCGATTTAATGTGAAGTTAATCATAGAAATCTATGCTTCTTGCTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E746436" ref_strand="+" ref_description="SGN-E746436 [GI|47105018]">
      <seq>gatccactccctcttattaatgcagcagtccaagcgaaaaattaatcaaaaatgtctacatacacactactagttgttgtacttgtgtgcctatgtcacatgtctgtggcaatggtggagaagaaaacatacatcattcacatggctaaatcacaaatgccagcaatatttgatgatcatactcactggtatgacgcgtccctcaaatccgtctctgaatcagcagagatgatctatgtttataaaaacgttgttcatggttttgcagcaaggcttacagctcgacaagctgaatccttagagacccaacctgggattctctctgttttgcctgagctgatataccaactccacactactcggacacctctttttttgggacttgatagaagtgttaatatctttcctgagtccgatgctatgagtgatgtcattgtcggagtactcgatacaggggtttggccggagagaaagagctttgacgatactggatttggacctgtaccagattcgtggaaaggtgagtgtgagtccagcaacaacttcagttctgccatgtgtaacagaaagcttgttggagcgaggtatttttctaggggttatgaaactactcttggaccaattgatgagtccaaggagtctaaatctcctagggatgatgatggacatggaacacacactgcttcgacagcagctggttcagttgttcagggtgctagcctttttggttatgcttcaggaactgctcgtggaatggcctatcgtgccagagttgccatgtacaaagtttgctggcttgggggatgttttaactctgacatattggcagggatggacaaagccattgatgataaagttgatgtgctttcattatcacttggtggaagcacaccagattactacaaagatagcattgcaattggagcttttgctgctatggagaagggtattttggtttcttgctctgctggaaatgctggacctaatcaattcagtttggccaaccaagcaccttggatcaccacagtcggtgctggaacaattgaccgtgattttccagcatatgtaagccttggcaatggtaaaaatttctccggcgtttcactttacgcgggtgattcattacttaataaaatgcttcccttggtgtatgctggtaatgccagcaatgtaaccagtggaaatctctgtatgatgggtaccttaattcctgagaaagttaaaggaaaaattgtgctgtgtgacagagggattagcgctcgagtccaaaagggttttgtggtaaaagaggctggtggagccggcatggttttggctaacaccgcagcaaatggggaggaactagtggctgacgcccatttacttccagcggcggcggtgggtcaaaaagccggtgatgtaatcaagaaatatttattctcagatcctaatccaacggccgaaattctttttggaggaacaaaagtagacatcgaaccgtcaccggttgtcgcagcgttcagttctagaggcccaaattcaatcaccccggagatactcaaaccggatattatcgcgcccggtgtaaacattctggccggttggaccggagccgtcggcccgacggggatggcagaggacgatagacgggtcgagttcaacattatctcaggcacatccatgtcgtgtccacacgtgagcggcttggcggctttgataaaaggagtccacccagaatggagccccgccgccattcgttcggcgctcatgacctccgcttacaccgtctacaagaacggcggagcactagtagatgtcgccaccggaaaaccatctacacctttcgaccacggcgctggacacgtggatcccgtttcggcagtgaacccaggtcttgtttacgacataaacgccgatgattacctcaatttcatgtgtgcattgaaatacactccatcacaaatcaacagcttagcgagaagaaacttcacgtgtgattcaagcaaaacatacagcgtcacagatttgaattacccttcatttgctgtttcattcgttgccgggagtgacggttcaaacacaatcaagtacagccggacattgactaatgttggaccggctggaacatacaaagttacagtttcttccccaaatagttcagtgaaaattatagttgagcctgaaacattgagtttcactcagattaatgagaagaaatcgtatacagtgagttttactgctccatcaaagtcctcagctacggatgtattcggtagaattgagtggtcagatgggaagcatgtggttagtagtccagttgcaatttcttggtcatgaataatatgaagacatagctatagcttctgttaattttatgtataagttgatgtttttctgcttttaagtttcattccagcacaaaagtttgtagctggtctcaagatttttttatggataacatgaaagaatcaaagaaatgtatgccttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="62282" stop="81153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62581" g_stop="65061" g_length="2481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2481" r_length="2481" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E746436" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>2481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62581" e_stop="65061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCCACTCCCTCTTATTAATGCAGCAGTCCAAGCGAAAAATTAATCAAAAATGTCTACATACACACTACTAGTTGTTGTACTTGTGTGCCTATGTCACATGTCTGTGGCAATGGTGGAGAAGAAAACATACATCATTCACATGGCTAAATCACAAATGCCAGCAATATTTGATGATCATACTCACTGGTATGACGCGTCCCTCAAATCCGTCTCTGAATCAGCAGAGATGATCTATGTTTATAAAAACGTTGTTCATGGTTTTGCAGCAAGGCTTACAGCTCGACAAGCTGAATCCTTAGAGACCCAACCTGGGATTCTCTCTGTTTTGCCTGAGCTGATATACCAACTCCACACTACTCGGACACCTCTTTTTTTGGGACTTGATAGAAGTGTTAATATCTTTCCTGAGTCCGATGCTATGAGTGATGTCATTGTCGGAGTACTCGATACAGGGGTTTGGCCGGAGAGAAAGAGCTTTGACGATACTGGATTTGGACCTGTACCAGATTCGTGGAAAGGTGAGTGTGAGTCCAGCAACAACTTCAGTTCTGCCATGTGTAACAGAAAGCTTGTTGGAGCGAGGTATTTTTCTAGGGGTTATGAAACTACTCTTGGACCAATTGATGAGTCCAAGGAGTCTAAATCTCCTAGGGATGATGATGGACATGGAACACACACTGCTTCGACAGCAGCTGGTTCAGTTGTTCAGGGTGCTAGCCTTTTTGGTTATGCTTCAGGAACTGCTCGTGGAATGGCCTATCGTGCCAGAGTTGCCATGTACAAAGTTTGCTGGCTTGGGGGATGTTTTAACTCTGACATATTGGCAGGGATGGACAAAGCCATTGATGATAAAGTTGATGTGCTTTCATTATCACTTGGTGGAAGCACACCAGATTACTACAAAGATAGCATTGCAATTGGAGCTTTTGCTGCTATGGAGAAGGGTATTTTGGTTTCTTGCTCTGCTGGAAATGCTGGACCTAATCAATTCAGTTTGGCCAACCAAGCACCTTGGATCACCACAGTCGGTGCTGGAACAATTGACCGTGATTTTCCAGCATATGTAAGCCTTGGCAATGGTAAAAATTTCTCCGGCGTTTCACTTTACGCGGGTGATTCATTACTTAATAAAATGCTTCCCTTGGTGTATGCTGGTAATGCCAGCAATGTAACCAGTGGAAATCTCTGTATGATGGGTACCTTAATTCCTGAGAAAGTTAAAGGAAAAATTGTGCTGTGTGACAGAGGGATTAGCGCTCGAGTCCAAAAGGGTTTTGTGGTAAAAGAGGCTGGTGGAGCCGGCATGGTTTTGGCTAACACCGCAGCAAATGGGGAGGAACTAGTGGCTGACGCCCATTTACTTCCAGCGGCGGCGGTGGGTCAAAAAGCCGGTGATGTAATCAAGAAATATTTATTCTCAGATCCTAATCCAACGGCCGAAATTCTTTTTGGAGGAACAAAAGTAGACATCGAACCGTCACCGGTTGTCGCAGCGTTCAGTTCTAGAGGCCCAAATTCAATCACCCCGGAGATACTCAAACCGGATATTATCGCGCCCGGTGTAAACATTCTGGCCGGTTGGACCGGAGCCGTCGGCCCGACGGGGATGGCAGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGCGGCTTGGCGGCTTTGATAAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCTCCGCTTACACCGTCTACAAGAACGGCGGAGCACTAGTAGATGTCGCCACCGGAAAACCATCTACACCTTTCGACCACGGCGCTGGACACGTGGATCCCGTTTCGGCAGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCATGTGTGCATTGAAATACACTCCATCACAAATCAACAGCTTAGCGAGAAGAAACTTCACGTGTGATTCAAGCAAAACATACAGCGTCACAGATTTGAATTACCCTTCATTTGCTGTTTCATTCGTTGCCGGGAGTGACGGTTCAAACACAATCAAGTACAGCCGGACATTGACTAATGTTGGACCGGCTGGAACATACAAAGTTACAGTTTCTTCCCCAAATAGTTCAGTGAAAATTATAGTTGAGCCTGAAACATTGAGTTTCACTCAGATTAATGAGAAGAAATCGTATACAGTGAGTTTTACTGCTCCATCAAAGTCCTCAGCTACGGATGTATTCGGTAGAATTGAGTGGTCAGATGGGAAGCATGTGGTTAGTAGTCCAGTTGCAATTTCTTGGTCATGAATAATATGAAGACATAGCTATAGCTTCTGTTAATTTTATGTATAAGTTGATGTTTTTCTGCTTTTAAGTTTCATTCCAGCACAAAAGTTTGTAGCTGGTCTCAAGATTTTTTTATGGATAACATGAAAGAATCAAAGAAATGTATGCCTTATACAATATCTTGCT</genome_strand>
        <mrna_strand>GATCCACTCCCTCTTATTAATGCAGCAGTCCAAGCGAAAAATTAATCAAAAATGTCTACATACACACTACTAGTTGTTGTACTTGTGTGCCTATGTCACATGTCTGTGGCAATGGTGGAGAAGAAAACATACATCATTCACATGGCTAAATCACAAATGCCAGCAATATTTGATGATCATACTCACTGGTATGACGCGTCCCTCAAATCCGTCTCTGAATCAGCAGAGATGATCTATGTTTATAAAAACGTTGTTCATGGTTTTGCAGCAAGGCTTACAGCTCGACAAGCTGAATCCTTAGAGACCCAACCTGGGATTCTCTCTGTTTTGCCTGAGCTGATATACCAACTCCACACTACTCGGACACCTCTTTTTTTGGGACTTGATAGAAGTGTTAATATCTTTCCTGAGTCCGATGCTATGAGTGATGTCATTGTCGGAGTACTCGATACAGGGGTTTGGCCGGAGAGAAAGAGCTTTGACGATACTGGATTTGGACCTGTACCAGATTCGTGGAAAGGTGAGTGTGAGTCCAGCAACAACTTCAGTTCTGCCATGTGTAACAGAAAGCTTGTTGGAGCGAGGTATTTTTCTAGGGGTTATGAAACTACTCTTGGACCAATTGATGAGTCCAAGGAGTCTAAATCTCCTAGGGATGATGATGGACATGGAACACACACTGCTTCGACAGCAGCTGGTTCAGTTGTTCAGGGTGCTAGCCTTTTTGGTTATGCTTCAGGAACTGCTCGTGGAATGGCCTATCGTGCCAGAGTTGCCATGTACAAAGTTTGCTGGCTTGGGGGATGTTTTAACTCTGACATATTGGCAGGGATGGACAAAGCCATTGATGATAAAGTTGATGTGCTTTCATTATCACTTGGTGGAAGCACACCAGATTACTACAAAGATAGCATTGCAATTGGAGCTTTTGCTGCTATGGAGAAGGGTATTTTGGTTTCTTGCTCTGCTGGAAATGCTGGACCTAATCAATTCAGTTTGGCCAACCAAGCACCTTGGATCACCACAGTCGGTGCTGGAACAATTGACCGTGATTTTCCAGCATATGTAAGCCTTGGCAATGGTAAAAATTTCTCCGGCGTTTCACTTTACGCGGGTGATTCATTACTTAATAAAATGCTTCCCTTGGTGTATGCTGGTAATGCCAGCAATGTAACCAGTGGAAATCTCTGTATGATGGGTACCTTAATTCCTGAGAAAGTTAAAGGAAAAATTGTGCTGTGTGACAGAGGGATTAGCGCTCGAGTCCAAAAGGGTTTTGTGGTAAAAGAGGCTGGTGGAGCCGGCATGGTTTTGGCTAACACCGCAGCAAATGGGGAGGAACTAGTGGCTGACGCCCATTTACTTCCAGCGGCGGCGGTGGGTCAAAAAGCCGGTGATGTAATCAAGAAATATTTATTCTCAGATCCTAATCCAACGGCCGAAATTCTTTTTGGAGGAACAAAAGTAGACATCGAACCGTCACCGGTTGTCGCAGCGTTCAGTTCTAGAGGCCCAAATTCAATCACCCCGGAGATACTCAAACCGGATATTATCGCGCCCGGTGTAAACATTCTGGCCGGTTGGACCGGAGCCGTCGGCCCGACGGGGATGGCAGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGCGGCTTGGCGGCTTTGATAAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCTCCGCTTACACCGTCTACAAGAACGGCGGAGCACTAGTAGATGTCGCCACCGGAAAACCATCTACACCTTTCGACCACGGCGCTGGACACGTGGATCCCGTTTCGGCAGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCATGTGTGCATTGAAATACACTCCATCACAAATCAACAGCTTAGCGAGAAGAAACTTCACGTGTGATTCAAGCAAAACATACAGCGTCACAGATTTGAATTACCCTTCATTTGCTGTTTCATTCGTTGCCGGGAGTGACGGTTCAAACACAATCAAGTACAGCCGGACATTGACTAATGTTGGACCGGCTGGAACATACAAAGTTACAGTTTCTTCCCCAAATAGTTCAGTGAAAATTATAGTTGAGCCTGAAACATTGAGTTTCACTCAGATTAATGAGAAGAAATCGTATACAGTGAGTTTTACTGCTCCATCAAAGTCCTCAGCTACGGATGTATTCGGTAGAATTGAGTGGTCAGATGGGAAGCATGTGGTTAGTAGTCCAGTTGCAATTTCTTGGTCATGAATAATATGAAGACATAGCTATAGCTTCTGTTAATTTTATGTATAAGTTGATGTTTTTCTGCTTTTAAGTTTCATTCCAGCACAAAAGTTTGTAGCTGGTCTCAAGATTTTTTTATGGATAACATGAAAGAATCAAAGAAATGTATGCCTTAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E340986" ref_strand="+" ref_description="SGN-E340986 [cTOF-5-H23]">
      <seq>agcagtccaagcgaaaaattaatcaaaaatgtctacatacacactactagttgttgtacttgtgtgcctatgtcacatgtctgtggcaatggtggagaagaaaacatacatcattcacatggctaaatcacaaatgccagcaatatttgatgatcatactcactggtatgacgcgtccctcaaatccgtctctgaatcagcagagatgatctatgtttataaaaacgttgttcatggttttgcagcaaggcttacagctcgacaagctgaatccttagagacccaacctgggattctctctgttttgcctgagctgatataccaactccacactactcggacacctctttttttgggacttgatagaagtgttaatatctttcctgagtccgatgctatgagtgatgtcattgtcggagtactcgatacaggggtttggccggagagaaagagctttgacgatactggatttggacctgtaccagattcgtggaaaggtgagtgtgagtccagcaacaacttcagttctgccatgtgtaacagaaagcttgttggagcgaggtatttttctaggggttatgaaactactcttggaccaattgatgagtccaaggagtctaaatctcctagggatgatgatggacatggaacacacactgcttcgacagcagctggttcagttgttcagggtgctagcctttttggttatgcttcangaactgctcgtggaatggcctatcgtgccagagtgccatgtaccaagtttgctggctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="62304" stop="63678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62604" g_stop="63378" g_length="775"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="774" r_length="774" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E340986" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62604" e_stop="63378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGTCCAAGCGAAAAATTAATCAAAAATGTCTACATACACACTACTAGTTGTTGTACTTGTGTGCCTATGTCACATGTCTGTGGCAATGGTGGAGAAGAAAACATACATCATTCACATGGCTAAATCACAAATGCCAGCAATATTTGATGATCATACTCACTGGTATGACGCGTCCCTCAAATCCGTCTCTGAATCAGCAGAGATGATCTATGTTTATAAAAACGTTGTTCATGGTTTTGCAGCAAGGCTTACAGCTCGACAAGCTGAATCCTTAGAGACCCAACCTGGGATTCTCTCTGTTTTGCCTGAGCTGATATACCAACTCCACACTACTCGGACACCTCTTTTTTTGGGACTTGATAGAAGTGTTAATATCTTTCCTGAGTCCGATGCTATGAGTGATGTCATTGTCGGAGTACTCGATACAGGGGTTTGGCCGGAGAGAAAGAGCTTTGACGATACTGGATTTGGACCTGTACCAGATTCGTGGAAAGGTGAGTGTGAGTCCAGCAACAACTTCAGTTCTGCCATGTGTAACAGAAAGCTTGTTGGAGCGAGGTATTTTTCTAGGGGTTATGAAACTACTCTTGGACCAATTGATGAGTCCAAGGAGTCTAAATCTCCTAGGGATGATGATGGACATGGAACACACACTGCTTCGACAGCAGCTGGTTCAGTTGTTCAGGGTGCTAGCCTTTTTGGTTATGCTTCAGGAACTGCTCGTGGAATGGCCTATCGTGCCAGAGTTGCCATGTACAAAGTTTGCTGGCTT</genome_strand>
        <mrna_strand>AGCAGTCCAAGCGAAAAATTAATCAAAAATGTCTACATACACACTACTAGTTGTTGTACTTGTGTGCCTATGTCACATGTCTGTGGCAATGGTGGAGAAGAAAACATACATCATTCACATGGCTAAATCACAAATGCCAGCAATATTTGATGATCATACTCACTGGTATGACGCGTCCCTCAAATCCGTCTCTGAATCAGCAGAGATGATCTATGTTTATAAAAACGTTGTTCATGGTTTTGCAGCAAGGCTTACAGCTCGACAAGCTGAATCCTTAGAGACCCAACCTGGGATTCTCTCTGTTTTGCCTGAGCTGATATACCAACTCCACACTACTCGGACACCTCTTTTTTTGGGACTTGATAGAAGTGTTAATATCTTTCCTGAGTCCGATGCTATGAGTGATGTCATTGTCGGAGTACTCGATACAGGGGTTTGGCCGGAGAGAAAGAGCTTTGACGATACTGGATTTGGACCTGTACCAGATTCGTGGAAAGGTGAGTGTGAGTCCAGCAACAACTTCAGTTCTGCCATGTGTAACAGAAAGCTTGTTGGAGCGAGGTATTTTTCTAGGGGTTATGAAACTACTCTTGGACCAATTGATGAGTCCAAGGAGTCTAAATCTCCTAGGGATGATGATGGACATGGAACACACACTGCTTCGACAGCAGCTGGTTCAGTTGTTCAGGGTGCTAGCCTTTTTGGTTATGCTTCANGAACTGCTCGTGGAATGGCCTATCGTGCCAGAG-TGCCATGTACCAAGTTTGCTGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E709595" ref_strand="+" ref_description="SGN-E709595 [FA52CB04]">
      <seq>cggctcgacaagctgaatccttagagacccaacctgggattctctctgttttgcctgagctgatataccaactccacactactcggacacctctttttttgggacttgatagaagtgttaatatctttcctgagtccgatgctatgagtgatgtcattgtcggagtactcgatacaggggtttggccggagagaaagagctttgacgatactggatttggacctgtaccagattcgtggaaaggtgagtgtgagtccagcaacaacttcagttctgccatgtgtaacagaaagcttgttggagcgaggtatttttctaggggttatgaaactactcttggaccaattgatgagtccaaggagtctaaatctcctagggatgatgatggacatggaacacacactgcttcgacagcagctggttcagttgttcagggtgctagcctttttggttatgcttcaggaactgctcgtggaatggcctatcgtgccagagttgccatgtacaaagtttgctggcttgggggatgttttaactctgacatattggcagggatggacaaagccattgatgataaagttgatgtgctttcattatcacttggtggaagcacaccagattactacaaagatagcattgcaattggagcttttgctgctatggagaagggattttggtttcttgctctgctggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="62558" stop="63853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62858" g_stop="63553" g_length="696"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="695" r_length="695" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E709595" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62858" e_stop="63553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTCGACAAGCTGAATCCTTAGAGACCCAACCTGGGATTCTCTCTGTTTTGCCTGAGCTGATATACCAACTCCACACTACTCGGACACCTCTTTTTTTGGGACTTGATAGAAGTGTTAATATCTTTCCTGAGTCCGATGCTATGAGTGATGTCATTGTCGGAGTACTCGATACAGGGGTTTGGCCGGAGAGAAAGAGCTTTGACGATACTGGATTTGGACCTGTACCAGATTCGTGGAAAGGTGAGTGTGAGTCCAGCAACAACTTCAGTTCTGCCATGTGTAACAGAAAGCTTGTTGGAGCGAGGTATTTTTCTAGGGGTTATGAAACTACTCTTGGACCAATTGATGAGTCCAAGGAGTCTAAATCTCCTAGGGATGATGATGGACATGGAACACACACTGCTTCGACAGCAGCTGGTTCAGTTGTTCAGGGTGCTAGCCTTTTTGGTTATGCTTCAGGAACTGCTCGTGGAATGGCCTATCGTGCCAGAGTTGCCATGTACAAAGTTTGCTGGCTTGGGGGATGTTTTAACTCTGACATATTGGCAGGGATGGACAAAGCCATTGATGATAAAGTTGATGTGCTTTCATTATCACTTGGTGGAAGCACACCAGATTACTACAAAGATAGCATTGCAATTGGAGCTTTTGCTGCTATGGAGAAGGGTATTTTGGTTTCTTGCTCTGCTGGAA</genome_strand>
        <mrna_strand>CGGCTCGACAAGCTGAATCCTTAGAGACCCAACCTGGGATTCTCTCTGTTTTGCCTGAGCTGATATACCAACTCCACACTACTCGGACACCTCTTTTTTTGGGACTTGATAGAAGTGTTAATATCTTTCCTGAGTCCGATGCTATGAGTGATGTCATTGTCGGAGTACTCGATACAGGGGTTTGGCCGGAGAGAAAGAGCTTTGACGATACTGGATTTGGACCTGTACCAGATTCGTGGAAAGGTGAGTGTGAGTCCAGCAACAACTTCAGTTCTGCCATGTGTAACAGAAAGCTTGTTGGAGCGAGGTATTTTTCTAGGGGTTATGAAACTACTCTTGGACCAATTGATGAGTCCAAGGAGTCTAAATCTCCTAGGGATGATGATGGACATGGAACACACACTGCTTCGACAGCAGCTGGTTCAGTTGTTCAGGGTGCTAGCCTTTTTGGTTATGCTTCAGGAACTGCTCGTGGAATGGCCTATCGTGCCAGAGTTGCCATGTACAAAGTTTGCTGGCTTGGGGGATGTTTTAACTCTGACATATTGGCAGGGATGGACAAAGCCATTGATGATAAAGTTGATGTGCTTTCATTATCACTTGGTGGAAGCACACCAGATTACTACAAAGATAGCATTGCAATTGGAGCTTTTGCTGCTATGGAGAAGGG-ATTTTGGTTTCTTGCTCTGCTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E558223" ref_strand="+" ref_description="SGN-E558223 [17530]">
      <seq>tgatgagtccaaggagtctaaatctcccagggatgatgatggacatggaacacacactgcttccacagcagctggttcagttgttcacggtgctagcctttttggttatgcttcaggaactgctcgtggaatggcctatcgtgccagagttgccgtctacaaagtttgctggcttgggggatgttttaactctgacatattggcagggatggacaaagccattgatgataaagttgatgtgctttcattatcacttggtggaagcacaccagattactacaaagacagcattgcaattggagcttttgctgctatggagaagggtattttggtttcttgctctgctggaaatgctggacctaatcaattcagtttgtccaaccaagcaccttggatcaccaccgtcggtgctggaacaattgaccgtgattttccagcatatgtaagccttggcaatggtaaaaatttctccgngcgtttcactttacgcgggtgattcattacttaataagatgcttcccttggtgtatgccggtaatgccagcaatgtaaccagtggaaatctctgtatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="62904" stop="64076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63204" g_stop="63776" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E558223" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E558223" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63204" e_stop="63776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGAGTCCAAGGAGTCTAAATCTCCTAGGGATGATGATGGACATGGAACACACACTGCTTCGACAGCAGCTGGTTCAGTTGTTCAGGGTGCTAGCCTTTTTGGTTATGCTTCAGGAACTGCTCGTGGAATGGCCTATCGTGCCAGAGTTGCCATGTACAAAGTTTGCTGGCTTGGGGGATGTTTTAACTCTGACATATTGGCAGGGATGGACAAAGCCATTGATGATAAAGTTGATGTGCTTTCATTATCACTTGGTGGAAGCACACCAGATTACTACAAAGATAGCATTGCAATTGGAGCTTTTGCTGCTATGGAGAAGGGTATTTTGGTTTCTTGCTCTGCTGGAAATGCTGGACCTAATCAATTCAGTTTGGCCAACCAAGCACCTTGGATCACCACAGTCGGTGCTGGAACAATTGACCGTGATTTTCCAGCATATGTAAGCCTTGGCAATGGTAAAAATTTCTCCG-GCGTTTCACTTTACGCGGGTGATTCATTACTTAATAAAATGCTTCCCTTGGTGTATGCTGGTAATGCCAGCAATGTAACCAGTGGAAATCTCTGTATGAT</genome_strand>
        <mrna_strand>TGATGAGTCCAAGGAGTCTAAATCTCCCAGGGATGATGATGGACATGGAACACACACTGCTTCCACAGCAGCTGGTTCAGTTGTTCACGGTGCTAGCCTTTTTGGTTATGCTTCAGGAACTGCTCGTGGAATGGCCTATCGTGCCAGAGTTGCCGTCTACAAAGTTTGCTGGCTTGGGGGATGTTTTAACTCTGACATATTGGCAGGGATGGACAAAGCCATTGATGATAAAGTTGATGTGCTTTCATTATCACTTGGTGGAAGCACACCAGATTACTACAAAGACAGCATTGCAATTGGAGCTTTTGCTGCTATGGAGAAGGGTATTTTGGTTTCTTGCTCTGCTGGAAATGCTGGACCTAATCAATTCAGTTTGTCCAACCAAGCACCTTGGATCACCACCGTCGGTGCTGGAACAATTGACCGTGATTTTCCAGCATATGTAAGCCTTGGCAATGGTAAAAATTTCTCCGNGCGTTTCACTTTACGCGGGTGATTCATTACTTAATAAGATGCTTCCCTTGGTGTATGCCGGTAATGCCAGCAATGTAACCAGTGGAAATCTCTGTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E409805" ref_strand="+" ref_description="SGN-E409805 [PPI-15-I19]">
      <seq>ggagaagggtattttggtttcttgctctgctggaaatgctggacctaatcaattcagtttgtccaaccaagcaccttggatcaccaccgtcggtgctggaacaattgaccgtgattttccagcatatgttacccttggcaatggtaaaaatttctccggcgtttcactttacgcgggtgattcattacttaataagatgcttcccttggtgtatgctggtaatgccagcaatgtaaccagtggaaatctctgtatgatgggtaccttaattcctgagaaagttaaaggcaaaattgtgctgtgtgacagagggattaacgctagagtccaaaagggttttgtggtaaaagcagctggtggagccggcatggttttggctaacaccgcagcaaatggggaggagctagtggctgacgcccatttacttccagcggcggcggtgggtctaatagccggcgatgcagtcaagaaatatttattctccgatcctaatccaacggccgaaattctttttggaggaacnaaggtangaatccaaccgtcaccggttgttgcagcgttcagttccagaggcccaaatttcatcaccccggagatactcaaaccggatattatcgcgcccggtgtaaacattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="63219" stop="64453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63519" g_stop="64153" g_length="635"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="635" r_length="635" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E409805" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E409805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63519" e_stop="64153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAAGGGTATTTTGGTTTCTTGCTCTGCTGGAAATGCTGGACCTAATCAATTCAGTTTGGCCAACCAAGCACCTTGGATCACCACAGTCGGTGCTGGAACAATTGACCGTGATTTTCCAGCATATGTAAGCCTTGGCAATGGTAAAAATTTCTCCGGCGTTTCACTTTACGCGGGTGATTCATTACTTAATAAAATGCTTCCCTTGGTGTATGCTGGTAATGCCAGCAATGTAACCAGTGGAAATCTCTGTATGATGGGTACCTTAATTCCTGAGAAAGTTAAAGGAAAAATTGTGCTGTGTGACAGAGGGATTAGCGCTCGAGTCCAAAAGGGTTTTGTGGTAAAAGAGGCTGGTGGAGCCGGCATGGTTTTGGCTAACACCGCAGCAAATGGGGAGGAACTAGTGGCTGACGCCCATTTACTTCCAGCGGCGGCGGTGGGTCAAAAAGCCGGTGATGTAATCAAGAAATATTTATTCTCAGATCCTAATCCAACGGCCGAAATTCTTTTTGGAGGAACAAAAGTAGACATCGAACCGTCACCGGTTGTCGCAGCGTTCAGTTCTAGAGGCCCAAATTCAATCACCCCGGAGATACTCAAACCGGATATTATCGCGCCCGGTGTAAACATTC</genome_strand>
        <mrna_strand>GGAGAAGGGTATTTTGGTTTCTTGCTCTGCTGGAAATGCTGGACCTAATCAATTCAGTTTGTCCAACCAAGCACCTTGGATCACCACCGTCGGTGCTGGAACAATTGACCGTGATTTTCCAGCATATGTTACCCTTGGCAATGGTAAAAATTTCTCCGGCGTTTCACTTTACGCGGGTGATTCATTACTTAATAAGATGCTTCCCTTGGTGTATGCTGGTAATGCCAGCAATGTAACCAGTGGAAATCTCTGTATGATGGGTACCTTAATTCCTGAGAAAGTTAAAGGCAAAATTGTGCTGTGTGACAGAGGGATTAACGCTAGAGTCCAAAAGGGTTTTGTGGTAAAAGCAGCTGGTGGAGCCGGCATGGTTTTGGCTAACACCGCAGCAAATGGGGAGGAGCTAGTGGCTGACGCCCATTTACTTCCAGCGGCGGCGGTGGGTCTAATAGCCGGCGATGCAGTCAAGAAATATTTATTCTCCGATCCTAATCCAACGGCCGAAATTCTTTTTGGAGGAACNAAGGTANGAATCCAACCGTCACCGGTTGTTGCAGCGTTCAGTTCCAGAGGCCCAAATTTCATCACCCCGGAGATACTCAAACCGGATATTATCGCGCCCGGTGTAAACATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728865" ref_strand="+" ref_description="SGN-E728865 [LA19AH01]">
      <seq>aggtttccagcatatgtaagccttggcaatggtaaaaatttctccggcgtttcactttacgcgggtgattcattacttaataaaatgcttcccttggtgtatgctggtaatgccagcaatgtaaccagtggaaatctctgtatgatgggtaccttaattcctgagaaagttaaaggaaaaattgtgctgtgtgacagagggattagcgctcgagtccaaaagggttttgtggtaaaagaggctggtggagccggcatggttttggctaacaccgcagcaaatggggaggaactagtggctgacgcccatttacttccagcggcggcggtgggtcaaaaagccggtgatgtaatcaagaaatatttattctcagatcctaatccaacggccgaaattctttttggaggaacaaaagtagacatcgaaccgtcaccggttgtcgcagcgttcagttctagaggcccaaattcaatcaccccggagatactcaaaccggatattatcgcgcccggtgtaaacattctggccggttggaccggagccgtcggcccgacggggatggcagaggacgatagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="63334" stop="64507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63631" g_stop="64207" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="577" r_length="577" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E728865" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63631" e_stop="64207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTTCCAGCATATGTAAGCCTTGGCAATGGTAAAAATTTCTCCGGCGTTTCACTTTACGCGGGTGATTCATTACTTAATAAAATGCTTCCCTTGGTGTATGCTGGTAATGCCAGCAATGTAACCAGTGGAAATCTCTGTATGATGGGTACCTTAATTCCTGAGAAAGTTAAAGGAAAAATTGTGCTGTGTGACAGAGGGATTAGCGCTCGAGTCCAAAAGGGTTTTGTGGTAAAAGAGGCTGGTGGAGCCGGCATGGTTTTGGCTAACACCGCAGCAAATGGGGAGGAACTAGTGGCTGACGCCCATTTACTTCCAGCGGCGGCGGTGGGTCAAAAAGCCGGTGATGTAATCAAGAAATATTTATTCTCAGATCCTAATCCAACGGCCGAAATTCTTTTTGGAGGAACAAAAGTAGACATCGAACCGTCACCGGTTGTCGCAGCGTTCAGTTCTAGAGGCCCAAATTCAATCACCCCGGAGATACTCAAACCGGATATTATCGCGCCCGGTGTAAACATTCTGGCCGGTTGGACCGGAGCCGTCGGCCCGACGGGGATGGCAGAGGACGATAGAC</genome_strand>
        <mrna_strand>AGGTTTCCAGCATATGTAAGCCTTGGCAATGGTAAAAATTTCTCCGGCGTTTCACTTTACGCGGGTGATTCATTACTTAATAAAATGCTTCCCTTGGTGTATGCTGGTAATGCCAGCAATGTAACCAGTGGAAATCTCTGTATGATGGGTACCTTAATTCCTGAGAAAGTTAAAGGAAAAATTGTGCTGTGTGACAGAGGGATTAGCGCTCGAGTCCAAAAGGGTTTTGTGGTAAAAGAGGCTGGTGGAGCCGGCATGGTTTTGGCTAACACCGCAGCAAATGGGGAGGAACTAGTGGCTGACGCCCATTTACTTCCAGCGGCGGCGGTGGGTCAAAAAGCCGGTGATGTAATCAAGAAATATTTATTCTCAGATCCTAATCCAACGGCCGAAATTCTTTTTGGAGGAACAAAAGTAGACATCGAACCGTCACCGGTTGTCGCAGCGTTCAGTTCTAGAGGCCCAAATTCAATCACCCCGGAGATACTCAAACCGGATATTATCGCGCCCGGTGTAAACATTCTGGCCGGTTGGACCGGAGCCGTCGGCCCGACGGGGATGGCAGAGGACGATAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725866" ref_strand="+" ref_description="SGN-E725866 [LA08CC06]">
      <seq>ggaaatctctgtatgatgggtaccttaattcctgagaaagttaaaggaaaaattgtgctgtgtgacagagggattagcgctcgagtccaaaagggttttgtggtaaaagaggctggtggagccggcatggttttggctaacaccgcaccaaatggggaggaactagtggctgacgcccatttacttccagcggcggcggtgggtcaaaaagccggtgatgtaatcaagaaatatttattctcagatcctaatccaacggccgaaattctttttggaggaacaaaagtagacatcgaaccgtcaccggttgtcgcagcgttcagttctagaggcccaaattcaatcaccccggagatactcagaccggatattatcgcgcccggtgtaaacattctggccggttggaccggagccgtcggcccgaccgggatggcagaggacgatagacgggtcgagttcaacattatctcaggcacatccatgtcgtgtccacacgtgagcggcttggcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="63460" stop="64569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63760" g_stop="64269" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E725866" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63760" e_stop="64269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAATCTCTGTATGATGGGTACCTTAATTCCTGAGAAAGTTAAAGGAAAAATTGTGCTGTGTGACAGAGGGATTAGCGCTCGAGTCCAAAAGGGTTTTGTGGTAAAAGAGGCTGGTGGAGCCGGCATGGTTTTGGCTAACACCGCAGCAAATGGGGAGGAACTAGTGGCTGACGCCCATTTACTTCCAGCGGCGGCGGTGGGTCAAAAAGCCGGTGATGTAATCAAGAAATATTTATTCTCAGATCCTAATCCAACGGCCGAAATTCTTTTTGGAGGAACAAAAGTAGACATCGAACCGTCACCGGTTGTCGCAGCGTTCAGTTCTAGAGGCCCAAATTCAATCACCCCGGAGATACTCAAACCGGATATTATCGCGCCCGGTGTAAACATTCTGGCCGGTTGGACCGGAGCCGTCGGCCCGACGGGGATGGCAGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGCGGCTTGGCG</genome_strand>
        <mrna_strand>GGAAATCTCTGTATGATGGGTACCTTAATTCCTGAGAAAGTTAAAGGAAAAATTGTGCTGTGTGACAGAGGGATTAGCGCTCGAGTCCAAAAGGGTTTTGTGGTAAAAGAGGCTGGTGGAGCCGGCATGGTTTTGGCTAACACCGCACCAAATGGGGAGGAACTAGTGGCTGACGCCCATTTACTTCCAGCGGCGGCGGTGGGTCAAAAAGCCGGTGATGTAATCAAGAAATATTTATTCTCAGATCCTAATCCAACGGCCGAAATTCTTTTTGGAGGAACAAAAGTAGACATCGAACCGTCACCGGTTGTCGCAGCGTTCAGTTCTAGAGGCCCAAATTCAATCACCCCGGAGATACTCAGACCGGATATTATCGCGCCCGGTGTAAACATTCTGGCCGGTTGGACCGGAGCCGTCGGCCCGACCGGGATGGCAGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGCGGCTTGGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728730" ref_strand="+" ref_description="SGN-E728730 [LA18DA12]">
      <seq>aagggttttgtggtaaaagaggctggtggagccggcatggttttggctaacaccgcagcaaatggggaggaactagtgggggacgcccatttacttccagcggcggcggtgggtcaaaaagccggtgatgtaatcaagaaatatttattctcagatcctaatccaacggccgaaattctttttggaggaacaaaagtagacatcgaaccgtcaccggttgtcgcagcgttcagttctagaggcccaaattcaatcaccccggagatactcaaaccggatattatcgcgcccggtgtaaacattctggccggttggaccggagccgtcggcccgacggggatggcagaggacgatagacgggtcgagttcaacattatctcaggcacatccatgtcgtgtccacacgtgagcggcttggcggctttgataaaaggagtccacccagaatggagccccgccgccattcgttcggcgctcatgacctccgcttacaccgtctacaagaacggcggagcactagtagatgtcgccaccggaaaaccatctacacctttcgaccacggcgctggacacgtggatcccgtttcggcagtgaacccaggtcttgtttacgacataaacgccgatgattacctcaatttcatgtgtgcattgaaatacactccatcacaaatcaacagcttagcgagaagaaacttcacgtgtgattcaagcaaaacatacagcgtcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="63550" stop="64880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63850" g_stop="64580" g_length="731"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="731" r_length="731" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E728730" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63850" e_stop="64580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGGTTTTGTGGTAAAAGAGGCTGGTGGAGCCGGCATGGTTTTGGCTAACACCGCAGCAAATGGGGAGGAACTAGTGGCTGACGCCCATTTACTTCCAGCGGCGGCGGTGGGTCAAAAAGCCGGTGATGTAATCAAGAAATATTTATTCTCAGATCCTAATCCAACGGCCGAAATTCTTTTTGGAGGAACAAAAGTAGACATCGAACCGTCACCGGTTGTCGCAGCGTTCAGTTCTAGAGGCCCAAATTCAATCACCCCGGAGATACTCAAACCGGATATTATCGCGCCCGGTGTAAACATTCTGGCCGGTTGGACCGGAGCCGTCGGCCCGACGGGGATGGCAGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGCGGCTTGGCGGCTTTGATAAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCTCCGCTTACACCGTCTACAAGAACGGCGGAGCACTAGTAGATGTCGCCACCGGAAAACCATCTACACCTTTCGACCACGGCGCTGGACACGTGGATCCCGTTTCGGCAGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCATGTGTGCATTGAAATACACTCCATCACAAATCAACAGCTTAGCGAGAAGAAACTTCACGTGTGATTCAAGCAAAACATACAGCGTCAC</genome_strand>
        <mrna_strand>AAGGGTTTTGTGGTAAAAGAGGCTGGTGGAGCCGGCATGGTTTTGGCTAACACCGCAGCAAATGGGGAGGAACTAGTGGGGGACGCCCATTTACTTCCAGCGGCGGCGGTGGGTCAAAAAGCCGGTGATGTAATCAAGAAATATTTATTCTCAGATCCTAATCCAACGGCCGAAATTCTTTTTGGAGGAACAAAAGTAGACATCGAACCGTCACCGGTTGTCGCAGCGTTCAGTTCTAGAGGCCCAAATTCAATCACCCCGGAGATACTCAAACCGGATATTATCGCGCCCGGTGTAAACATTCTGGCCGGTTGGACCGGAGCCGTCGGCCCGACGGGGATGGCAGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGCGGCTTGGCGGCTTTGATAAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCTCCGCTTACACCGTCTACAAGAACGGCGGAGCACTAGTAGATGTCGCCACCGGAAAACCATCTACACCTTTCGACCACGGCGCTGGACACGTGGATCCCGTTTCGGCAGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCATGTGTGCATTGAAATACACTCCATCACAAATCAACAGCTTAGCGAGAAGAAACTTCACGTGTGATTCAAGCAAAACATACAGCGTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E427838" ref_strand="+" ref_description="SGN-E427838 [STM-49-M15]">
      <seq>gagctagtggctgacgcccatttacttccagcggcggcggtgggtctaatagccggcgatgcagtcaagaaatatttattctccgatcctaatccaacggccgaaattctttttggaggaacaaaggtaggaatccaaccatcaccggttgttgcagcgttcagttccagaggcccaaattcaatcaccccggagatactcaaaccggatattatcgcgcccggtgtaaacattctggccggttggaccggagccgtcggcccgacggggatggctgaggacgatagacgggtcgagttcaacattatctcaggcacatccatgtcgtgtccacatgtgagtggcttagcggctttggttaaaggagtccacccagaatggagcccggccgccattcgttcggcgctcatgaccaccgcttacaccgtctacaagaacggcggagcactcctagatatcgccacgggaaagccatctacacctttcgatcacggcgctggacacgtggatcccgtttcggcggtgaacccaggtcttgtttacgacataaacgccgatgattacctcgatttcatgtgtgcattgaaatacactccatcacaaatcaatagcttagcaagaagaaacttcacatgtgattcaagcaaaaaatacagcgtcacagatttgaattacccttcctttgctgtttcattccctgctgataccggttcaaacacaatcaagtacagccggacactgactaatgttggaccagctggaacatacaaagttactgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="63619" stop="65000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63919" g_stop="64700" g_length="782"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="779" r_length="779" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E427838" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E427838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63919" e_stop="64700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTAGTGGCTGACGCCCATTTACTTCCAGCGGCGGCGGTGGGTCAAAAAGCCGGTGATGTAATCAAGAAATATTTATTCTCAGATCCTAATCCAACGGCCGAAATTCTTTTTGGAGGAACAAAAGTAGACATCGAACCGTCACCGGTTGTCGCAGCGTTCAGTTCTAGAGGCCCAAATTCAATCACCCCGGAGATACTCAAACCGGATATTATCGCGCCCGGTGTAAACATTCTGGCCGGTTGGACCGGAGCCGTCGGCCCGACGGGGATGGCAGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGCGGCTTGGCGGCTTTGATAAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCTCCGCTTACACCGTCTACAAGAACGGCGGAGCACTAGTAGATGTCGCCACCGGAAAACCATCTACACCTTTCGACCACGGCGCTGGACACGTGGATCCCGTTTCGGCAGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCATGTGTGCATTGAAATACACTCCATCACAAATCAACAGCTTAGCGAGAAGAAACTTCACGTGTGATTCAAGCAAAACATACAGCGTCACAGATTTGAATTACCCTTCATTTGCTGTTTCATTCGTTGCCGGGAGTGACGGTTCAAACACAATCAAGTACAGCCGGACATTGACTAATGTTGGACCGGCTGGAACATACAAAGTTACAGT</genome_strand>
        <mrna_strand>GAGCTAGTGGCTGACGCCCATTTACTTCCAGCGGCGGCGGTGGGTCTAATAGCCGGCGATGCAGTCAAGAAATATTTATTCTCCGATCCTAATCCAACGGCCGAAATTCTTTTTGGAGGAACAAAGGTAGGAATCCAACCATCACCGGTTGTTGCAGCGTTCAGTTCCAGAGGCCCAAATTCAATCACCCCGGAGATACTCAAACCGGATATTATCGCGCCCGGTGTAAACATTCTGGCCGGTTGGACCGGAGCCGTCGGCCCGACGGGGATGGCTGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACATGTGAGTGGCTTAGCGGCTTTGGTTAAAGGAGTCCACCCAGAATGGAGCCCGGCCGCCATTCGTTCGGCGCTCATGACCACCGCTTACACCGTCTACAAGAACGGCGGAGCACTCCTAGATATCGCCACGGGAAAGCCATCTACACCTTTCGATCACGGCGCTGGACACGTGGATCCCGTTTCGGCGGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCGATTTCATGTGTGCATTGAAATACACTCCATCACAAATCAATAGCTTAGCAAGAAGAAACTTCACATGTGATTCAAGCAAAAAATACAGCGTCACAGATTTGAATTACCCTTCCTTTGCTGTTTCATTCCCTG-C-TGA-TACCGGTTCAAACACAATCAAGTACAGCCGGACACTGACTAATGTTGGACCAGCTGGAACATACAAAGTTACTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E477864" ref_strand="+" ref_description="SGN-E477864 [cSTD-2-C3]">
      <seq>gagctagtggctgacgcccatttacttccagcggcggcggtgggtctaatagccggcgatgcagtcaagaaatatttattctccgatcctaatccaacggccgaaattctttttggaggaacaaaggtaggaatccaaccatcaccggttgttgcagcgttcagttccagaggcccaaattcaatcaccccggagatactcaaaccggatattatcgcgcccggtgtaaacattctggccggttggaccggagccgtcggcccgacggggatggctgaggacgatagacgggtcgagttcaacattatctcaggcacatccatgtcgtgtccacatgtgagtggcttagcggctttggttaaaggagtccacccagaatggagcccggccgccattcgttcggcgctcatgaccaccgcttacaccgtctacaagaacggcggagcactcctagatatcgccacgggaaagccatctacacctttcgatcacggcgctggacacgtggatcccgtttcggcggtgaacccaggtcttgtttacgacataaacgccgatgattacctcgatttcatgtgtgcattgaaatacactccatcacaaatcaatagcttagcaagaagaaacttcacatgtgattcaagcaaaaaatacagcgtcacagatttgaattacccttcctttgctgtttcattccctgctgataccggttcaaacacaatcaagtacagccggacactgactaatgttggaccagctggaacataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="63619" stop="64990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63919" g_stop="64690" g_length="772"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="769" r_length="769" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E477864" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E477864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63919" e_stop="64690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTAGTGGCTGACGCCCATTTACTTCCAGCGGCGGCGGTGGGTCAAAAAGCCGGTGATGTAATCAAGAAATATTTATTCTCAGATCCTAATCCAACGGCCGAAATTCTTTTTGGAGGAACAAAAGTAGACATCGAACCGTCACCGGTTGTCGCAGCGTTCAGTTCTAGAGGCCCAAATTCAATCACCCCGGAGATACTCAAACCGGATATTATCGCGCCCGGTGTAAACATTCTGGCCGGTTGGACCGGAGCCGTCGGCCCGACGGGGATGGCAGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGCGGCTTGGCGGCTTTGATAAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCTCCGCTTACACCGTCTACAAGAACGGCGGAGCACTAGTAGATGTCGCCACCGGAAAACCATCTACACCTTTCGACCACGGCGCTGGACACGTGGATCCCGTTTCGGCAGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCATGTGTGCATTGAAATACACTCCATCACAAATCAACAGCTTAGCGAGAAGAAACTTCACGTGTGATTCAAGCAAAACATACAGCGTCACAGATTTGAATTACCCTTCATTTGCTGTTTCATTCGTTGCCGGGAGTGACGGTTCAAACACAATCAAGTACAGCCGGACATTGACTAATGTTGGACCGGCTGGAACATACA</genome_strand>
        <mrna_strand>GAGCTAGTGGCTGACGCCCATTTACTTCCAGCGGCGGCGGTGGGTCTAATAGCCGGCGATGCAGTCAAGAAATATTTATTCTCCGATCCTAATCCAACGGCCGAAATTCTTTTTGGAGGAACAAAGGTAGGAATCCAACCATCACCGGTTGTTGCAGCGTTCAGTTCCAGAGGCCCAAATTCAATCACCCCGGAGATACTCAAACCGGATATTATCGCGCCCGGTGTAAACATTCTGGCCGGTTGGACCGGAGCCGTCGGCCCGACGGGGATGGCTGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACATGTGAGTGGCTTAGCGGCTTTGGTTAAAGGAGTCCACCCAGAATGGAGCCCGGCCGCCATTCGTTCGGCGCTCATGACCACCGCTTACACCGTCTACAAGAACGGCGGAGCACTCCTAGATATCGCCACGGGAAAGCCATCTACACCTTTCGATCACGGCGCTGGACACGTGGATCCCGTTTCGGCGGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCGATTTCATGTGTGCATTGAAATACACTCCATCACAAATCAATAGCTTAGCAAGAAGAAACTTCACATGTGATTCAAGCAAAAAATACAGCGTCACAGATTTGAATTACCCTTCCTTTGCTGTTTCATTCCCTG-C-TGA-TACCGGTTCAAACACAATCAAGTACAGCCGGACACTGACTAATGTTGGACCAGCTGGAACATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E699640" ref_strand="+" ref_description="SGN-E699640 [FA10DB05]">
      <seq>tctttttggaggaacaaaagtagacatcgaaccgtcaccggttgtcgcagcgttcagttctagaggcccaaattcaatcaccccggagatactcaaaccggatattatcgcgcccggtgtaaacattctggccggttggaccggagccgtcggcccgacggggatggcagaggacgatagacgggtcgagttcaacattatctcaggcacatccatgtcgtgtccacacgtgagcggcttggcggctttgataaaaggagtccacccagaatggagccccgccgccattcgttcggcgctcatgacctccgcttacaccgtctacaagaacggcggagcactagtagatgtcgccaccggaaaaccatctacacctttcgaccacggcgctggacacgtggatcccgtttcggcagtgaacccaggtcttgtttacgacataaacgccgatgattacctcaatttcatgtgtgcattgaaatacactccatcacaaatcaacagcttagcgagaagaaacttcacgtgtgattcaagcaaaacatacagcgtcacagatttgaattacccttcatttgctgtttcattcgttgccgggagtgacggttcaaacacaatcaagtacagccggacattgactaatgttggaccggctggaacatacaaagttacagtttcttcccccaaatagttcagtgaaaattatagttgagcctgaaacattgagtttcactcagattaatgagaagaaatcgtatacagtgagttttactgctccatcaaagtcctcagctacggatgtattcggtagaattgagtggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="63726" stop="65147"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64026" g_stop="64847" g_length="822"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="823" r_length="823" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E699640" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>822</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64026" e_stop="64847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTTGGAGGAACAAAAGTAGACATCGAACCGTCACCGGTTGTCGCAGCGTTCAGTTCTAGAGGCCCAAATTCAATCACCCCGGAGATACTCAAACCGGATATTATCGCGCCCGGTGTAAACATTCTGGCCGGTTGGACCGGAGCCGTCGGCCCGACGGGGATGGCAGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGCGGCTTGGCGGCTTTGATAAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCTCCGCTTACACCGTCTACAAGAACGGCGGAGCACTAGTAGATGTCGCCACCGGAAAACCATCTACACCTTTCGACCACGGCGCTGGACACGTGGATCCCGTTTCGGCAGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCATGTGTGCATTGAAATACACTCCATCACAAATCAACAGCTTAGCGAGAAGAAACTTCACGTGTGATTCAAGCAAAACATACAGCGTCACAGATTTGAATTACCCTTCATTTGCTGTTTCATTCGTTGCCGGGAGTGACGGTTCAAACACAATCAAGTACAGCCGGACATTGACTAATGTTGGACCGGCTGGAACATACAAAGTTACAGTTTCTT-CCCCAAATAGTTCAGTGAAAATTATAGTTGAGCCTGAAACATTGAGTTTCACTCAGATTAATGAGAAGAAATCGTATACAGTGAGTTTTACTGCTCCATCAAAGTCCTCAGCTACGGATGTATTCGGTAGAATTGAGTGGTC</genome_strand>
        <mrna_strand>TCTTTTTGGAGGAACAAAAGTAGACATCGAACCGTCACCGGTTGTCGCAGCGTTCAGTTCTAGAGGCCCAAATTCAATCACCCCGGAGATACTCAAACCGGATATTATCGCGCCCGGTGTAAACATTCTGGCCGGTTGGACCGGAGCCGTCGGCCCGACGGGGATGGCAGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGCGGCTTGGCGGCTTTGATAAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCTCCGCTTACACCGTCTACAAGAACGGCGGAGCACTAGTAGATGTCGCCACCGGAAAACCATCTACACCTTTCGACCACGGCGCTGGACACGTGGATCCCGTTTCGGCAGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCATGTGTGCATTGAAATACACTCCATCACAAATCAACAGCTTAGCGAGAAGAAACTTCACGTGTGATTCAAGCAAAACATACAGCGTCACAGATTTGAATTACCCTTCATTTGCTGTTTCATTCGTTGCCGGGAGTGACGGTTCAAACACAATCAAGTACAGCCGGACATTGACTAATGTTGGACCGGCTGGAACATACAAAGTTACAGTTTCTTCCCCCAAATAGTTCAGTGAAAATTATAGTTGAGCCTGAAACATTGAGTTTCACTCAGATTAATGAGAAGAAATCGTATACAGTGAGTTTTACTGCTCCATCAAAGTCCTCAGCTACGGATGTATTCGGTAGAATTGAGTGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735762" ref_strand="+" ref_description="SGN-E735762 [LC02DF09]">
      <seq>cgtatacatcgaaccgtcaccggttgtcgcagcgttcagttctagaggcccaaattcaatcaccccggagatactcaaaccggatattatcgcgcccggtgtaaacattctggccggttggaccggagccgtcggcccgacggggatggcagaggacgatagacgggtcgagttcaacattatctcaggcacatccatgtcgtgtccacacgtgagcggcttggcggctttgataaaaggagtccacccagaatggagccccgccgccattcgttcggcgctcatgacctccgcttacaccgtctacaagaacggcggagcactagtagatgtcgccaccggaaaaccatctacacctttcgaccacggcgctggacacgtggatcccgtttcggcagtgaacccaggtcttgtttacgacataaacgccgatgattacctcaatttcatgtgtgcattgaaatacactccatcacaaatcaacagcttagcgagaagaaacttcacgtgtgattcaagcaaaacatacagcgtcacagatttgaattacccttcatttgctgtttcattcgttgccgggagtgacggttcaaacacaatcaagtacagccggacattgactaatgttggaccggctggaacatacaaagttacagtttcttccccaaatagttcagtgaaaattatagttgagcctgaaacattgagtttcactcagattaatgagaagaaatcgtatacagtgagttttactgctccatcaaagtcctcagctacggatgtattcggtagaattgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="63745" stop="65144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64044" g_stop="64844" g_length="801"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="801" r_length="801" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E735762" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64044" e_stop="64844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAGACATCGAACCGTCACCGGTTGTCGCAGCGTTCAGTTCTAGAGGCCCAAATTCAATCACCCCGGAGATACTCAAACCGGATATTATCGCGCCCGGTGTAAACATTCTGGCCGGTTGGACCGGAGCCGTCGGCCCGACGGGGATGGCAGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGCGGCTTGGCGGCTTTGATAAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCTCCGCTTACACCGTCTACAAGAACGGCGGAGCACTAGTAGATGTCGCCACCGGAAAACCATCTACACCTTTCGACCACGGCGCTGGACACGTGGATCCCGTTTCGGCAGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCATGTGTGCATTGAAATACACTCCATCACAAATCAACAGCTTAGCGAGAAGAAACTTCACGTGTGATTCAAGCAAAACATACAGCGTCACAGATTTGAATTACCCTTCATTTGCTGTTTCATTCGTTGCCGGGAGTGACGGTTCAAACACAATCAAGTACAGCCGGACATTGACTAATGTTGGACCGGCTGGAACATACAAAGTTACAGTTTCTTCCCCAAATAGTTCAGTGAAAATTATAGTTGAGCCTGAAACATTGAGTTTCACTCAGATTAATGAGAAGAAATCGTATACAGTGAGTTTTACTGCTCCATCAAAGTCCTCAGCTACGGATGTATTCGGTAGAATTGAGTG</genome_strand>
        <mrna_strand>CGTATACATCGAACCGTCACCGGTTGTCGCAGCGTTCAGTTCTAGAGGCCCAAATTCAATCACCCCGGAGATACTCAAACCGGATATTATCGCGCCCGGTGTAAACATTCTGGCCGGTTGGACCGGAGCCGTCGGCCCGACGGGGATGGCAGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGCGGCTTGGCGGCTTTGATAAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCTCCGCTTACACCGTCTACAAGAACGGCGGAGCACTAGTAGATGTCGCCACCGGAAAACCATCTACACCTTTCGACCACGGCGCTGGACACGTGGATCCCGTTTCGGCAGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCATGTGTGCATTGAAATACACTCCATCACAAATCAACAGCTTAGCGAGAAGAAACTTCACGTGTGATTCAAGCAAAACATACAGCGTCACAGATTTGAATTACCCTTCATTTGCTGTTTCATTCGTTGCCGGGAGTGACGGTTCAAACACAATCAAGTACAGCCGGACATTGACTAATGTTGGACCGGCTGGAACATACAAAGTTACAGTTTCTTCCCCAAATAGTTCAGTGAAAATTATAGTTGAGCCTGAAACATTGAGTTTCACTCAGATTAATGAGAAGAAATCGTATACAGTGAGTTTTACTGCTCCATCAAAGTCCTCAGCTACGGATGTATTCGGTAGAATTGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E706660" ref_strand="+" ref_description="SGN-E706660 [FA30CC11]">
      <seq>ctcaaaccggatattatcgcgcccggtgtaaacattctggccggttggaccggagccgtcggcccgacggggatggcagaggacgatagacgggtcgagttcaacattatctcaggcacatccatgtcgtgtccacacgtgagcggcttggcggctttgataaaaggagtccacccagaatggagccccgccgccattcgttcggcgctcatgacctccgcttacaccgtctacaagaacggcggagcactagtagatgtcgccaccggaaaaccatctacacctttcgaccacggcgctggacacgtggatcccgtttcggcagtgaacccaggtcttgtttacgacataaacgccgatgattacctcaatttcatgtgtgcattgaaatacactccatcacaaatcaacagcttagcgagaagaaacttcacgtgtgattcaagcaaaacatacagcgtcacagatttgaattacccttcatttgctgtttcattcgttgccgggagtgacggttcaaacacaatcaagtacagccggacattgactaatgttggaccggctggaacatacaaagttacagtttcttccccaaatagttcagtgaaaattatagttgagcctgaaacattgagtttcactcagattaatgagaagaaatcgtatacagtgagttttactgctccatcaaagtcctcagctacggatgtattcggtagaattgagtggtcagatgggaagcatgtggttagtagtccagttgcaatttcttggtcatgaataatatgaagacatagctatagcttctgttaattttatgtataagttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="63817" stop="65248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64117" g_stop="64948" g_length="832"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="832" r_length="832" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E706660" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>832</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64117" e_stop="64948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAACCGGATATTATCGCGCCCGGTGTAAACATTCTGGCCGGTTGGACCGGAGCCGTCGGCCCGACGGGGATGGCAGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGCGGCTTGGCGGCTTTGATAAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCTCCGCTTACACCGTCTACAAGAACGGCGGAGCACTAGTAGATGTCGCCACCGGAAAACCATCTACACCTTTCGACCACGGCGCTGGACACGTGGATCCCGTTTCGGCAGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCATGTGTGCATTGAAATACACTCCATCACAAATCAACAGCTTAGCGAGAAGAAACTTCACGTGTGATTCAAGCAAAACATACAGCGTCACAGATTTGAATTACCCTTCATTTGCTGTTTCATTCGTTGCCGGGAGTGACGGTTCAAACACAATCAAGTACAGCCGGACATTGACTAATGTTGGACCGGCTGGAACATACAAAGTTACAGTTTCTTCCCCAAATAGTTCAGTGAAAATTATAGTTGAGCCTGAAACATTGAGTTTCACTCAGATTAATGAGAAGAAATCGTATACAGTGAGTTTTACTGCTCCATCAAAGTCCTCAGCTACGGATGTATTCGGTAGAATTGAGTGGTCAGATGGGAAGCATGTGGTTAGTAGTCCAGTTGCAATTTCTTGGTCATGAATAATATGAAGACATAGCTATAGCTTCTGTTAATTTTATGTATAAGTTGATG</genome_strand>
        <mrna_strand>CTCAAACCGGATATTATCGCGCCCGGTGTAAACATTCTGGCCGGTTGGACCGGAGCCGTCGGCCCGACGGGGATGGCAGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGCGGCTTGGCGGCTTTGATAAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCTCCGCTTACACCGTCTACAAGAACGGCGGAGCACTAGTAGATGTCGCCACCGGAAAACCATCTACACCTTTCGACCACGGCGCTGGACACGTGGATCCCGTTTCGGCAGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCATGTGTGCATTGAAATACACTCCATCACAAATCAACAGCTTAGCGAGAAGAAACTTCACGTGTGATTCAAGCAAAACATACAGCGTCACAGATTTGAATTACCCTTCATTTGCTGTTTCATTCGTTGCCGGGAGTGACGGTTCAAACACAATCAAGTACAGCCGGACATTGACTAATGTTGGACCGGCTGGAACATACAAAGTTACAGTTTCTTCCCCAAATAGTTCAGTGAAAATTATAGTTGAGCCTGAAACATTGAGTTTCACTCAGATTAATGAGAAGAAATCGTATACAGTGAGTTTTACTGCTCCATCAAAGTCCTCAGCTACGGATGTATTCGGTAGAATTGAGTGGTCAGATGGGAAGCATGTGGTTAGTAGTCCAGTTGCAATTTCTTGGTCATGAATAATATGAAGACATAGCTATAGCTTCTGTTAATTTTATGTATAAGTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E699872" ref_strand="+" ref_description="SGN-E699872 [FA11BG10]">
      <seq>aaacgccgatgattacctcaatttcatgtgtgcattgaaatacactccatcacaaatcaacagcttagcgagaagaaacttcacgtgtgattcaagcaaaacatacagcgtcacagatttgaattacccttcatttgctgtttcattcgttgccgggagtgacggttcaaacacaatcaagtacagccggacattgactaatgttggaccggctggaacatacaaagttacagtttcttccccaaatagttcagtgaaaattatagttgagcctgaaacattgagtttcactcagattaatgagaagaaatcgtatacagtgagttttactgctccatcaaagtcctcagctacggatgtattcggtagaattgagtggtcagatgggaagcatgtggttagtagtccagttgcaatttcttggtcatgaataatatgaagacatagctatagcttctgttaattttatgtataagttgatgtttttctgcttttaagtttcattccagcacaaaagtttgtagctggtctcaagatttttttatggataacatgaaagaatcaaagaaatgtatgccttatacaatatcttgctcactgtacggtattttaagcaattctaattgtgaactgtaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="64167" stop="65401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64467" g_stop="65098" g_length="632"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="632" r_length="632" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="635" polyA_stop="650"/>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E699872" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699872" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64467" e_stop="65098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACGCCGATGATTACCTCAATTTCATGTGTGCATTGAAATACACTCCATCACAAATCAACAGCTTAGCGAGAAGAAACTTCACGTGTGATTCAAGCAAAACATACAGCGTCACAGATTTGAATTACCCTTCATTTGCTGTTTCATTCGTTGCCGGGAGTGACGGTTCAAACACAATCAAGTACAGCCGGACATTGACTAATGTTGGACCGGCTGGAACATACAAAGTTACAGTTTCTTCCCCAAATAGTTCAGTGAAAATTATAGTTGAGCCTGAAACATTGAGTTTCACTCAGATTAATGAGAAGAAATCGTATACAGTGAGTTTTACTGCTCCATCAAAGTCCTCAGCTACGGATGTATTCGGTAGAATTGAGTGGTCAGATGGGAAGCATGTGGTTAGTAGTCCAGTTGCAATTTCTTGGTCATGAATAATATGAAGACATAGCTATAGCTTCTGTTAATTTTATGTATAAGTTGATGTTTTTCTGCTTTTAAGTTTCATTCCAGCACAAAAGTTTGTAGCTGGTCTCAAGATTTTTTTATGGATAACATGAAAGAATCAAAGAAATGTATGCCTTATACAATATCTTGCTCACTGTACGGTATTTTAAGCAATTCTAATTGTGAACT</genome_strand>
        <mrna_strand>AAACGCCGATGATTACCTCAATTTCATGTGTGCATTGAAATACACTCCATCACAAATCAACAGCTTAGCGAGAAGAAACTTCACGTGTGATTCAAGCAAAACATACAGCGTCACAGATTTGAATTACCCTTCATTTGCTGTTTCATTCGTTGCCGGGAGTGACGGTTCAAACACAATCAAGTACAGCCGGACATTGACTAATGTTGGACCGGCTGGAACATACAAAGTTACAGTTTCTTCCCCAAATAGTTCAGTGAAAATTATAGTTGAGCCTGAAACATTGAGTTTCACTCAGATTAATGAGAAGAAATCGTATACAGTGAGTTTTACTGCTCCATCAAAGTCCTCAGCTACGGATGTATTCGGTAGAATTGAGTGGTCAGATGGGAAGCATGTGGTTAGTAGTCCAGTTGCAATTTCTTGGTCATGAATAATATGAAGACATAGCTATAGCTTCTGTTAATTTTATGTATAAGTTGATGTTTTTCTGCTTTTAAGTTTCATTCCAGCACAAAAGTTTGTAGCTGGTCTCAAGATTTTTTTATGGATAACATGAAAGAATCAAAGAAATGTATGCCTTATACAATATCTTGCTCACTGTACGGTATTTTAAGCAATTCTAATTGTGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E427839" ref_strand="-" ref_description="SGN-E427839 [STM-49-M15]">
      <seq>tcaatagcttagcaagaagaaacttcacatgtgattcaagcaaaaaatacagcgtcacagatttgaattacccttcctttgctgtttcattccctgctgataccggttcaaacacaatcaagtacagccggacactgactaatgttggaccagctggaacatacaaagttactgtttcttcccctaatagttcagtgaaaattatagttgagcctgaaacagtgagtttcactcagattaatgagaagaaatcctatactgtgagttttactgctccatcaaagtcctcatctacggatgtattcggtagaattgagtggtcagatgggaagcatgtggttagtagtccagttgcaatatcatggtcatgaagacatagctaatagcttctgtttattttatgtataagttcatggttttctgctttttaagtttcattccagcacaaaagttggtagctggtttcaagatttttttatggataacatgaaagaatcaaagaaatgtatgccttgtacaatatcttgctcactgtacagtgttgttttataccaagtattgtaagcaattctaatatatatttttaacatgaagttcaaccatcaaagaggggggatatatggagcaaaaaaaaaaaaatttggatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="64223" stop="65377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64523" g_stop="65070" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65071" i_stop="65138" i_length="68">
            <donor d_prob="0.517" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65139" g_stop="65176" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="576" r_length="37" r_score="0.842"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="627" polyA_stop="640"/>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E427839" ref_strand="-">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E427839" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="64523" e_stop="65070"/>
          <exon e_start="65139" e_stop="65176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACAGCTTAGCGAGAAGAAACTTCACGTGTGATTCAAGCAAAACATACAGCGTCACAGATTTGAATTACCCTTCATTTGCTGTTTCATTCGTTGCCGGGAGTGACGGTTCAAACACAATCAAGTACAGCCGGACATTGACTAATGTTGGACCGGCTGGAACATACAAAGTTACAGTTTCTTCCCCAAATAGTTCAGTGAAAATTATAGTTGAGCCTGAAACATTGAGTTTCACTCAGATTAATGAGAAGAAATCGTATACAGTGAGTTTTACTGCTCCATCAAAGTCCTCAGCTACGGATGTATTCGGTAGAATTGAGTGGTCAGATGGGAAGCATGTGGTTAGTAGTCCAGTTGCAATTTCTTGGTCATGAATAATATGAAGACATAGCTATAGCTTCTGTTAATTTTATGTATAAGTTGATGTTTTTCTGC-TTTTAAGTTTCATTCCAGCACAAAAGTTTGTAGCTGGTCTCAAGATTTTTTTATGGATAACATGAAAGAATCAAAGAAATGTATGCCTTATACAATATCTTGCTCACTGTAC-GGTATTTTAAGCAATTCTAATTGTGAACTGTACCTACATACATCTCTTATCTCTGTGGTTTTGTTGAACTGTATCTCGTATACCAAGTATCGTAAGCAATTCTAATT</genome_strand>
        <mrna_strand>TCAATAGCTTAGCAAGAAGAAACTTCACATGTGATTCAAGCAAAAAATACAGCGTCACAGATTTGAATTACCCTTCCTTTGCTGTTTCATTCCCTG-C-TGA-TACCGGTTCAAACACAATCAAGTACAGCCGGACACTGACTAATGTTGGACCAGCTGGAACATACAAAGTTACTGTTTCTTCCCCTAATAGTTCAGTGAAAATTATAGTTGAGCCTGAAACAGTGAGTTTCACTCAGATTAATGAGAAGAAATCCTATACTGTGAGTTTTACTGCTCCATCAAAGTCCTCATCTACGGATGTATTCGGTAGAATTGAGTGGTCAGATGGGAAGCATGTGGTTAGTAGTCCAGTTGCAATATCATGGTCATGAA-GACAT--AG-C-TA---ATAGCTTCTGTTTATTTTATGTATAAGTTCATGGTTTTCTGCTTTTTAAGTTTCATTCCAGCACAAAAGTTGGTAGCTGGTTTCAAGATTTTTTTATGGATAACATGAAAGAATCAAAGAAATGTATGCCTTGTACAATATCTTGCTCACTGTACAG....................................................................TGT-TGTTTTATACCAAGTATTGTAAGCAATTCTAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E353937" ref_strand="+" ref_description="SGN-E353937 [cTOS-10-J8]">
      <seq>tttttttttacgtaatctttcttcaaattataatatctgcaatccaaccaaataattaaaggaaaaatcaccatgatatagagatcatgtctgccggtttaaagaaaacatgataagaaagaagagaaatttctcttactctttggtgatctctgaatatgaaacaagactttccgtggaccatcacaattctgaagagctggtaaaatcatgcaaactaagccaccatgtattctggtactcctctgggataacacttctccacaatacttactagaagcaaagtattaatttagccttttcagggcatcaatctgcaaagtggctcgaaagcaaaattgaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="67354" stop="68295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67651" g_stop="67995" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E353937" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67651" e_stop="67995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTCTTTACGTAATCTTTCTTCAAATTATAATATCTGCAATCCAACCAAATAATTAAAGGAAAAATCACCATGATATAGAGATCATGTCTGCCGGTTTAAAGAAAACATGATAAGAAAGAAGAGAAATTTCTCTTACTCTTTGGTGATCTCTGAATATGAAACAAGACTTTCCGTGGACCATCACAATTCTGAAGAGCTGTTAAAATCATGCAAACTAAGCCACCATGTATTCTGTTACTCCTCTGGTATAACACTTCTCCACAATACTTACTAGAAGCAAAGTATTAATTTAGCCTTTTCAGGGCATCAATCTGCAAAGTGTCTCGAAAGCAAAATTGAACT</genome_strand>
        <mrna_strand>TTTTTTTTTACGTAATCTTTCTTCAAATTATAATATCTGCAATCCAACCAAATAATTAAAGGAAAAATCACCATGATATAGAGATCATGTCTGCCGGTTTAAAGAAAACATGATAAGAAAGAAGAGAAATTTCTCTTACTCTTTGGTGATCTCTGAATATGAAACAAGACTTTCCGTGGACCATCACAATTCTGAAGAGCTGGTAAAATCATGCAAACTAAGCCACCATGTATTCTGGTACTCCTCTGGGATAACACTTCTCCACAATACTTACTAGAAGCAAAGTATTAATTTAGCCTTTTCAGGGCATCAATCTGCAAAGTGGCTCGAAAGCAAAATTGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E700950" ref_strand="+" ref_description="SGN-E700950 [FA14CE03]">
      <seq>gttcgatacacaactgctctctttgtcggtacctttttgggaatgctctcggatttgattggccacagaaaagtcaccttgttattttgcttgctgcatctttttgttgccgtatggaggagggttactggacatccaactatttggctcgctagcatctgtctgtctcttacctctacaatatttttcttcaacttccagacatggatggttgttgagcatgataagcttgagcagaagcaggattcactgaatgacatgttttggttagtgacttttgttgaatctgcatctttcattggaagccaagtggttggtaactggttaattggcggtcgtgaaaagacaactttgcttgctccgtccagtgcagtggtaataatggctcttagtgctctggcttatgtcagccgaggatggaacgaatatccaaaatcaattattcttaaagaatatcagactagatttcatacatacataatcagtgataaaagggtttggcttttgtcatggacccaagctaccatgcacttctcaattgcagttttttggattacttgggctccaaccattgtggcagatgggagatgggttttgctaggattactatacccctgtgtacttggtgcgaaaatgcttgcaagcactgcattttcctggatctctagtggccctttatcactccgaacagacgagtgcttattatatgcctgcattattatgggcttagccacttccattgcagcttatgattatcaggatgttgaaattctcttgatgctattctgcatatttcatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="72671" stop="68672"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72371" g_stop="72313" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72312" i_stop="71847" i_length="466">
            <donor d_prob="0.955" d_score="0.98"/>
            <acceptor a_prob="0.869" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71846" g_stop="71678" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="228" r_length="169" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71677" i_stop="71131" i_length="547">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71130" g_stop="70872" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="487" r_length="259" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70871" i_stop="69992" i_length="880">
            <donor d_prob="0.911" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69991" g_stop="69903" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="576" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69902" i_stop="69275" i_length="628">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69274" g_stop="69092" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="759" r_length="183" r_score="0.934"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69091" i_stop="69013" i_length="79">
            <donor d_prob="0.987" d_score="0.90"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69012" g_stop="68972" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="760" r_stop="800" r_length="41" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E700950" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72371" e_stop="72313"/>
          <exon e_start="71846" e_stop="71678"/>
          <exon e_start="71130" e_stop="70872"/>
          <exon e_start="69991" e_stop="69903"/>
          <exon e_start="69274" e_stop="69092"/>
          <exon e_start="69012" e_stop="68972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGATACGCAACTGCTCTCTTTGTCGGTACCTTTTTGGGAATGCTCTCGGATTTGATGTAAGGGTACCTGCCTAGTTTTCTGTGTTTACCATGTTCCATCTCTATTTGCATAACCATTATGGTATACTGCAAGTTGCCATTTTCATTCTTTTGGAAATCTATATATCATAAATTCAAAATCTTAGACTACGATTATTTGGTTCAACATCATAATGAAATAGAGCTTCCATTTTGGGAGATATTAAGTATCAATCTCATCTACGTTCCTTTGATGCATTCTTTTTAGACTAAGAGATCATTTTTCTAATAAACTGTCCAACAAAGCTTGAACTTGAAGCTATGTGTTTGACCAGTATATGTTCCAAAGTACTAAACTGTATTGGTCCATGATGATTATCATTATTGTTTTCAATCGTTTATTGTTCTCAAAATTGTGATGGAGCACCATAAGATAAATGATTTTTTTGATTAGTCAAGAATACCATCTGTCAAACTTATTATTATGTTGTCTCTCTTCCTGCAGTGGCCAGAGAAAAGTCAGCTTGTTATTTTGCTTGCTGCATCTTTTTGTTGCCGTATGGAGGAGGGTTACTGGACATCCAACTATTTGGCTCGCTAGCATCTGTCTGTCTCTTACCTCTACAATATTTTTCTTCAACTTCGAGACATGGATGGTTGTTGAGCATGATAAGGTTTGTCTTCGGAATCTCTTTTTGTTATTATTGTATGATTTGCTATTTCATGTGGGAAGTACTATTATGAAGACTTGTTAACTCAAAATGCTTATCCACTTTTTAAAATGAATAAATCTGGGAAATCTTTTTTATACCAAAAAAAGATGATGAATATATGTAGCAAATGCAAAGGGGTTAGGATGGGGGAGTATGGATGTATACTCTATAGTCTTTCAGAGTTTCTTTCTTTGTCAACTACATAAGTTTATTTTGGACCTATTTTGCCGTAGCAGCATATGTGATCACATTTGAAAAAGATGATGAATAAATGTAGCAAATGCAAAGGGGTTAGGGTGGGGGAGTGTGGATCTATAGTCTTTTAGAGTTTCTTTCTCTGCCAACTACATCAGCCTATTTTGGACCTATTCTTCCATAGCAGCATATGTGATCACATTTGAACATTTTTCTCGGTCGGGGAGTCTTCACAGTCAGATTTCAGATCTCTGTATGAATTTGAATCGTTGATAGTAGAGTAAGATGAGTTATCCTTATAATCATTTTGCAGCTTGAGCAGAGGCAGGATTCAGTGAATGACATGTTTTGGTTAATGACTTTTGTTGAATCTGCATCTTTCATTGGAAGCCAAGTGGTTGGTAACTGGTTAATTGGTGGTCATGAAAAGACAACTTTGCTTGCTCCGTCCAGTGCAGTGGTAATAATGGCTCTTAGTGCTCTGGCTTATGTCAGCCGAGGATGGAAGGAAGATCCAAAATCAATTATTCTTAAAGAATATCAGACTAAATTTCATACATACATAATCAGTGGTATGAGTCCTCTATTATTATTCTTATGTTCCTTTTCCTGAAGATATAACTTTCTGTTGTCACAACTTAACTGAGGGACACATTTCCATAGCTAACTGTGACACTAAAAGAAATATTTGATCAATTCTGTGGATCTCCCGATAAAAAGATTCTATAAATTAGTAATATCAGATAAGTTTTACCACTGAAATCCACAATTCGAATATTGGAATTCTTGGATAGTCACAAGAAATCTGGCTTAACTTATTTCCTTACTCTTTTGCGCTTCCCTTTCCAGTAAAAGGAGGCAATGTGCCACATTTGAGTTAAAAAGAAGAAAGGGGCGGTGATAGAAAGAGAGGGAAAGTAAGGAAGGAGGAATTCAAAAGGCTGACCACAATCTCATAGGCATTGTCAATCTGATCTTTCGCTCCGTCTCCAATTGCTCCCTTATTCCCTCGACCAAAGTCCAAACTATGTGTAGCTACCTTATTTTTCTTACTGTGATCTTATTTTGGGTGGTACTTGATCAACTTAGCTCGAAAACAGTAGTCAATACTTTAGAAGAGCATGAAAGCATTACAGAGCCATAAAGCAGAGAGAAATTAACCCATTTATTGTTAATAAATACTACCAGAATGGTAGAACAAACAGTACGAGTATAGTAATCTTCTAATACAAAATGAGGCTGTACCTAATTTGGGTTTATATATTAGTTGAAATGTAATGCTTAAGATAGTTAAAATGGTCCAATTTCAGAAATTAGAAGTTCTGCAACATCTTAATATGATATGAGATGGAGAACATGCATCTTTAAGAAATGCTGTTTTTGATGACTAATTGCATAATTGGGAGTGGTTGGATCGACTTTCTAATCTTTTTCCAATTGTATTCTTGGCAGATAAAAGGGTTTGGCTTTTGTCATGGACCCAAGCTACCATGCACTTCTCAATTGCAGTTTTTTGGATTACTTGGGCTCCAACCATTGTGGTATGATTCTGATAAGATTTCTCGAAAGGATACTGTTTCAGCGTTTCTGACTCTCCAATTCCTATTATTGTTTTCTCATGGAAATGTATTCTAATAGGTGTGCTAAATCTTTTAATCTACTTACCTTAATTTTGAAGAGAGTAGTTGAAGTTATCTATATGAAAACACACCTCCTTGATTAGATTTAAAATGTTTAAAGTTAATTATTCTTTTGTACTTTCGGTCTCAAAATTGGAAATGGAAGTGTATCAAGGAAAAATGGATAGAGGAAGTATTTGAGTTACTACTGTGCGAGGCCTTCTTTGGAAAGATTGATGAGATCCATTCTAATACCGAGAGTAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGGCTGTGACTGTTTGTGTAAGATAAATCAGAATGTTGACTATACAAGTGCAATAAACCATTTTACTATTATTGAAATCTATGAAGTAATCTTTTTGTGGCCAATATCTATGTCTCTCAAACTTTGTGAATACTGATTTACCAAGATGATTGCTTAACATTACATTTCTTTCCCTTCTGAAATCCTATCTCACCATATTTGTTCCTGGTCCAAAAAGATTGATATATTTTCTCCTTAAAGTTTGTTTGGATTTTTAGGCAGATGGGAGAGGGGTTTTGCTAGGTTTAGTATACCCCTGTGTACTTGGTGCGAAAATGCTTGGAAGCACTGCATTTTCCTGGTTCTCTAGTGGCCCTTTATCACTCCGAACAGAGGAGTGCTTAGTATATGCCTGTATTATTATGGGCTTTGTCACTTCCATTGTAGCTTTTGATTATCAGGTATTTATGAGTTTTCTTATCTTCAAGCTGTTCAAATATCAAGTAATGTCATCAAACTTAATTTGTGATATTGTTGCAGGATGTTGAAATTCTTTTGATGCTATTCTGCATATTTCATGC</genome_strand>
        <mrna_strand>GTTCGATACACAACTGCTCTCTTTGTCGGTACCTTTTTGGGAATGCTCTCGGATTTGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCACAGAAAAGTCACCTTGTTATTTTGCTTGCTGCATCTTTTTGTTGCCGTATGGAGGAGGGTTACTGGACATCCAACTATTTGGCTCGCTAGCATCTGTCTGTCTCTTACCTCTACAATATTTTTCTTCAACTTCCAGACATGGATGGTTGTTGAGCATGATAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGAGCAGAAGCAGGATTCACTGAATGACATGTTTTGGTTAGTGACTTTTGTTGAATCTGCATCTTTCATTGGAAGCCAAGTGGTTGGTAACTGGTTAATTGGCGGTCGTGAAAAGACAACTTTGCTTGCTCCGTCCAGTGCAGTGGTAATAATGGCTCTTAGTGCTCTGGCTTATGTCAGCCGAGGATGGAACGAATATCCAAAATCAATTATTCTTAAAGAATATCAGACTAGATTTCATACATACATAATCAGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAAGGGTTTGGCTTTTGTCATGGACCCAAGCTACCATGCACTTCTCAATTGCAGTTTTTTGGATTACTTGGGCTCCAACCATTGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGATGGGAGATGGGTTTTGCTAGGATTACTATACCCCTGTGTACTTGGTGCGAAAATGCTTGCAAGCACTGCATTTTCCTGGATCTCTAGTGGCCCTTTATCACTCCGAACAGACGAGTGCTTATTATATGCCTGCATTATTATGGGCTTAGCCACTTCCATTGCAGCTTATGATTATCAG...............................................................................GATGTTGAAATTCTCTTGATGCTATTCTGCATATTTCATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E455423" ref_strand="+" ref_description="SGN-E455423 [cSTS-26-A20]">
      <seq>gagaagtttccttttactctattcgctttcttcagtaatggaaggcttgttggcagtatttggagagtacgacttggcgttccatggcattagtagggagcagatggtcatctctctatgtattggatacacaactgctctctttgtcggtacctttttgggcatgctctcggatttgattggccagagaaaagtcagcttgttattttgcttgctgcatctttttgttgccatatggcggagggtgactggacatccaagtatttggctcgctagcatctgtctctctcttgcctctacgatatttttcttcaacttcgagacatggatggttgttgagcatgataagcttgagcagaggcaggattcagtgaatgacatgttttggttaatgacttttgttgaatctgcatcttttattggaagccaagtggttggtaactggttaattggtggtcatgaaaagacaagtttgcttgctccgtccagtgcagtggtaataatggctcttagtgctctggcttatgtcagccgaggatggaaggaagatccaaaatcaattcttcttaaagattatcagactaaattccgtacatacatactcagtgataaaagggtttggcttttgtcatggacccaagctaccatccacttctcaattgcagttttttggattacttgggctccaaccattgtggcagatgggagagaggttttactaggttttggtatacccatgtgtacttggtgcgaaaatgcttggaagcactgcattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="73626" stop="68897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73326" g_stop="73292" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73291" i_stop="72458" i_length="834">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72457" g_stop="72313" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="180" r_length="145" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72312" i_stop="71847" i_length="466">
            <donor d_prob="0.955" d_score="0.96"/>
            <acceptor a_prob="0.869" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71846" g_stop="71678" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="349" r_length="169" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71677" i_stop="71131" i_length="547">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71130" g_stop="70872" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="608" r_length="259" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70871" i_stop="69992" i_length="880">
            <donor d_prob="0.911" d_score="0.90"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69991" g_stop="69903" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="697" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69902" i_stop="69275" i_length="628">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69274" g_stop="69197" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="776" r_length="79" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E455423" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E455423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73326" e_stop="73292"/>
          <exon e_start="72457" e_stop="72313"/>
          <exon e_start="71846" e_stop="71678"/>
          <exon e_start="71130" e_stop="70872"/>
          <exon e_start="69991" e_stop="69903"/>
          <exon e_start="69274" e_stop="69197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAGTTTCCTTTTACTCTATTCGCTTTCTTCAGGTGACGTTATTTTCCGAGTTGTTTTTTTCTTCCCACTGAATGTAGTATTAGGAAATGTCGCGTTCTAATTAACTCCTAGAGTCTACTTGCTGCTAAAATTGGTGCGAGGTAGTGAACTTTACGTGTTTCCCTGTTTATTAACTGCTGGATTTCCTCTGTTACAAATGTTTGATATTTACCCTCTATTTTGCCAAAAGAGAAAAATGAAACTTCTAGCAGGTTCTGGATTTCATAATTTTAACTTAAAGAAATGAATTAAACTAGTCTGACTTAGTTCTGAAAATGGTCAAGTTGACGTCTCAAACTAATTGGATAGATGGACTATCTCTTAATTTGTATGTTGCTACATTGAGCATTTTATCAAGTTAGATATTTTTTTCATTTGTGGAACACTCAGGTTCACAAAAGTGGATTATCCTGTTGTTATAGTAGAGTAATAAACATCTATACAAATTTGGATCAATCAAATTCAAAAGTTTATTCAAGACTCAATGAAGTTATTCTAACATATGATATTAAAATGTTGATACGGGAACTTTACATTGAATGTGGAGTGTGAATTGATATACTGATACAAGTTGCTCCCGTATAATCTGTTTATTAGCATATTATGATAAGGCTGAGCTGACACCACAAAGTTGTCAATTATTATTTTAACTTGATAGAGATATCGTAGTTACTGATCATAGAACACATGTTAAGGTGTACGCGAAATCACATATTCCATAAAAAAAGTCACGCTTCCCTTTTTATTACATCCTCGATATATAAGTTTGTCCTTTTTATGATTGCTTGGATTCAAAATCGTTATTTATTTAATTTAACTTTTTACAGTAATGGAAGGCTTGTTGGCAGTATTTGGAGAGTACGACTTAGCATTCCATGGCATTAGTAGGGAGCAGATGGTCATCTCTCTATGTGTTGGATACGCAACTGCTCTCTTTGTCGGTACCTTTTTGGGAATGCTCTCGGATTTGATGTAAGGGTACCTGCCTAGTTTTCTGTGTTTACCATGTTCCATCTCTATTTGCATAACCATTATGGTATACTGCAAGTTGCCATTTTCATTCTTTTGGAAATCTATATATCATAAATTCAAAATCTTAGACTACGATTATTTGGTTCAACATCATAATGAAATAGAGCTTCCATTTTGGGAGATATTAAGTATCAATCTCATCTACGTTCCTTTGATGCATTCTTTTTAGACTAAGAGATCATTTTTCTAATAAACTGTCCAACAAAGCTTGAACTTGAAGCTATGTGTTTGACCAGTATATGTTCCAAAGTACTAAACTGTATTGGTCCATGATGATTATCATTATTGTTTTCAATCGTTTATTGTTCTCAAAATTGTGATGGAGCACCATAAGATAAATGATTTTTTTGATTAGTCAAGAATACCATCTGTCAAACTTATTATTATGTTGTCTCTCTTCCTGCAGTGGCCAGAGAAAAGTCAGCTTGTTATTTTGCTTGCTGCATCTTTTTGTTGCCGTATGGAGGAGGGTTACTGGACATCCAACTATTTGGCTCGCTAGCATCTGTCTGTCTCTTACCTCTACAATATTTTTCTTCAACTTCGAGACATGGATGGTTGTTGAGCATGATAAGGTTTGTCTTCGGAATCTCTTTTTGTTATTATTGTATGATTTGCTATTTCATGTGGGAAGTACTATTATGAAGACTTGTTAACTCAAAATGCTTATCCACTTTTTAAAATGAATAAATCTGGGAAATCTTTTTTATACCAAAAAAAGATGATGAATATATGTAGCAAATGCAAAGGGGTTAGGATGGGGGAGTATGGATGTATACTCTATAGTCTTTCAGAGTTTCTTTCTTTGTCAACTACATAAGTTTATTTTGGACCTATTTTGCCGTAGCAGCATATGTGATCACATTTGAAAAAGATGATGAATAAATGTAGCAAATGCAAAGGGGTTAGGGTGGGGGAGTGTGGATCTATAGTCTTTTAGAGTTTCTTTCTCTGCCAACTACATCAGCCTATTTTGGACCTATTCTTCCATAGCAGCATATGTGATCACATTTGAACATTTTTCTCGGTCGGGGAGTCTTCACAGTCAGATTTCAGATCTCTGTATGAATTTGAATCGTTGATAGTAGAGTAAGATGAGTTATCCTTATAATCATTTTGCAGCTTGAGCAGAGGCAGGATTCAGTGAATGACATGTTTTGGTTAATGACTTTTGTTGAATCTGCATCTTTCATTGGAAGCCAAGTGGTTGGTAACTGGTTAATTGGTGGTCATGAAAAGACAACTTTGCTTGCTCCGTCCAGTGCAGTGGTAATAATGGCTCTTAGTGCTCTGGCTTATGTCAGCCGAGGATGGAAGGAAGATCCAAAATCAATTATTCTTAAAGAATATCAGACTAAATTTCATACATACATAATCAGTGGTATGAGTCCTCTATTATTATTCTTATGTTCCTTTTCCTGAAGATATAACTTTCTGTTGTCACAACTTAACTGAGGGACACATTTCCATAGCTAACTGTGACACTAAAAGAAATATTTGATCAATTCTGTGGATCTCCCGATAAAAAGATTCTATAAATTAGTAATATCAGATAAGTTTTACCACTGAAATCCACAATTCGAATATTGGAATTCTTGGATAGTCACAAGAAATCTGGCTTAACTTATTTCCTTACTCTTTTGCGCTTCCCTTTCCAGTAAAAGGAGGCAATGTGCCACATTTGAGTTAAAAAGAAGAAAGGGGCGGTGATAGAAAGAGAGGGAAAGTAAGGAAGGAGGAATTCAAAAGGCTGACCACAATCTCATAGGCATTGTCAATCTGATCTTTCGCTCCGTCTCCAATTGCTCCCTTATTCCCTCGACCAAAGTCCAAACTATGTGTAGCTACCTTATTTTTCTTACTGTGATCTTATTTTGGGTGGTACTTGATCAACTTAGCTCGAAAACAGTAGTCAATACTTTAGAAGAGCATGAAAGCATTACAGAGCCATAAAGCAGAGAGAAATTAACCCATTTATTGTTAATAAATACTACCAGAATGGTAGAACAAACAGTACGAGTATAGTAATCTTCTAATACAAAATGAGGCTGTACCTAATTTGGGTTTATATATTAGTTGAAATGTAATGCTTAAGATAGTTAAAATGGTCCAATTTCAGAAATTAGAAGTTCTGCAACATCTTAATATGATATGAGATGGAGAACATGCATCTTTAAGAAATGCTGTTTTTGATGACTAATTGCATAATTGGGAGTGGTTGGATCGACTTTCTAATCTTTTTCCAATTGTATTCTTGGCAGATAAAAGGGTTTGGCTTTTGTCATGGACCCAAGCTACCATGCACTTCTCAATTGCAGTTTTTTGGATTACTTGGGCTCCAACCATTGTGGTATGATTCTGATAAGATTTCTCGAAAGGATACTGTTTCAGCGTTTCTGACTCTCCAATTCCTATTATTGTTTTCTCATGGAAATGTATTCTAATAGGTGTGCTAAATCTTTTAATCTACTTACCTTAATTTTGAAGAGAGTAGTTGAAGTTATCTATATGAAAACACACCTCCTTGATTAGATTTAAAATGTTTAAAGTTAATTATTCTTTTGTACTTTCGGTCTCAAAATTGGAAATGGAAGTGTATCAAGGAAAAATGGATAGAGGAAGTATTTGAGTTACTACTGTGCGAGGCCTTCTTTGGAAAGATTGATGAGATCCATTCTAATACCGAGAGTAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGGCTGTGACTGTTTGTGTAAGATAAATCAGAATGTTGACTATACAAGTGCAATAAACCATTTTACTATTATTGAAATCTATGAAGTAATCTTTTTGTGGCCAATATCTATGTCTCTCAAACTTTGTGAATACTGATTTACCAAGATGATTGCTTAACATTACATTTCTTTCCCTTCTGAAATCCTATCTCACCATATTTGTTCCTGGTCCAAAAAGATTGATATATTTTCTCCTTAAAGTTTGTTTGGATTTTTAGGCAGATGGGAGAGGGGTTTTGCTAGG-TTTAGTATACCCCTGTGTACTTGGTGCGAAAATGCTTGGAAGCACTGCATTT</genome_strand>
        <mrna_strand>GAGAAGTTTCCTTTTACTCTATTCGCTTTCTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGGAAGGCTTGTTGGCAGTATTTGGAGAGTACGACTTGGCGTTCCATGGCATTAGTAGGGAGCAGATGGTCATCTCTCTATGTATTGGATACACAACTGCTCTCTTTGTCGGTACCTTTTTGGGCATGCTCTCGGATTTGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCAGAGAAAAGTCAGCTTGTTATTTTGCTTGCTGCATCTTTTTGTTGCCATATGGCGGAGGGTGACTGGACATCCAAGTATTTGGCTCGCTAGCATCTGTCTCTCTCTTGCCTCTACGATATTTTTCTTCAACTTCGAGACATGGATGGTTGTTGAGCATGATAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGAGCAGAGGCAGGATTCAGTGAATGACATGTTTTGGTTAATGACTTTTGTTGAATCTGCATCTTTTATTGGAAGCCAAGTGGTTGGTAACTGGTTAATTGGTGGTCATGAAAAGACAAGTTTGCTTGCTCCGTCCAGTGCAGTGGTAATAATGGCTCTTAGTGCTCTGGCTTATGTCAGCCGAGGATGGAAGGAAGATCCAAAATCAATTCTTCTTAAAGATTATCAGACTAAATTCCGTACATACATACTCAGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAAGGGTTTGGCTTTTGTCATGGACCCAAGCTACCATCCACTTCTCAATTGCAGTTTTTTGGATTACTTGGGCTCCAACCATTGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGATGGGAGAGAGGTTTTACTAGGTTTTGGTATACCCATGTGTACTTGGTGCGAAAATGCTTGGAAGCACTGCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E557949" ref_strand="+" ref_description="SGN-E557949 [16828]">
      <seq>atctttttgttgcatatggcggagggtgactggacatccaagtatttggctcgctagcatctgtctctctcttgcctctacgatatttttcttcaacttcgagacatggattgtttgttgagcatgataagcttgagcagaggcaggattcagtgaatgacatgttttggtttatgactttttgttgaatctgcatcttttattggaagccaagtggttggtaactggttaattggtggtcatgaaaagacaagtttgcttgctccgtccagtgcagtggtaataatggctcttaatgctctggcttatgtcagcgaggatggaaggaagatcccaaatcaattcttcttaaagattatcagactaaattccgtacatacatactcagtgataaaagggtttggcttttgtcatggacccaagctaccatccacttctcaattgcagtttttttggattacttgggctccaaccattgtggtatgattttgacaagcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="72108" stop="69584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71808" g_stop="71678" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.916"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71677" i_stop="71131" i_length="547">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.982" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71130" g_stop="70872" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="390" r_length="259" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70871" i_stop="69992" i_length="880">
            <donor d_prob="0.911" d_score="0.90"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69991" g_stop="69883" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="500" r_length="110" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E557949" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E557949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71808" e_stop="71678"/>
          <exon e_start="71130" e_stop="70872"/>
          <exon e_start="69991" e_stop="69883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTTTGTTGCCGTATGGAGGAGGGTTACTGGACATCCAACTATTTGGCTCGCTAGCATCTGTCTGTCTCTTACCTCTACAATATTTTTCTTCAACTTCGAGACATGGA-TGGTTGTTGAGCATGATAAGGTTTGTCTTCGGAATCTCTTTTTGTTATTATTGTATGATTTGCTATTTCATGTGGGAAGTACTATTATGAAGACTTGTTAACTCAAAATGCTTATCCACTTTTTAAAATGAATAAATCTGGGAAATCTTTTTTATACCAAAAAAAGATGATGAATATATGTAGCAAATGCAAAGGGGTTAGGATGGGGGAGTATGGATGTATACTCTATAGTCTTTCAGAGTTTCTTTCTTTGTCAACTACATAAGTTTATTTTGGACCTATTTTGCCGTAGCAGCATATGTGATCACATTTGAAAAAGATGATGAATAAATGTAGCAAATGCAAAGGGGTTAGGGTGGGGGAGTGTGGATCTATAGTCTTTTAGAGTTTCTTTCTCTGCCAACTACATCAGCCTATTTTGGACCTATTCTTCCATAGCAGCATATGTGATCACATTTGAACATTTTTCTCGGTCGGGGAGTCTTCACAGTCAGATTTCAGATCTCTGTATGAATTTGAATCGTTGATAGTAGAGTAAGATGAGTTATCCTTATAATCATTTTGCAGCTTGAGCAGAGGCAGGATTCAGTGAATGACATGTTTTGGTTAATGAC-TTTTGTTGAATCTGCATCTTTCATTGGAAGCCAAGTGGTTGGTAACTGGTTAATTGGTGGTCATGAAAAGACAACTTTGCTTGCTCCGTCCAGTGCAGTGGTAATAATGGCTCTTAGTGCTCTGGCTTATGTCAGCCGAGGATGGAAGGAAGATCCAAAATCAATTATTCTTAAAGAATATCAGACTAAATTTCATACATACATAATCAGTGGTATGAGTCCTCTATTATTATTCTTATGTTCCTTTTCCTGAAGATATAACTTTCTGTTGTCACAACTTAACTGAGGGACACATTTCCATAGCTAACTGTGACACTAAAAGAAATATTTGATCAATTCTGTGGATCTCCCGATAAAAAGATTCTATAAATTAGTAATATCAGATAAGTTTTACCACTGAAATCCACAATTCGAATATTGGAATTCTTGGATAGTCACAAGAAATCTGGCTTAACTTATTTCCTTACTCTTTTGCGCTTCCCTTTCCAGTAAAAGGAGGCAATGTGCCACATTTGAGTTAAAAAGAAGAAAGGGGCGGTGATAGAAAGAGAGGGAAAGTAAGGAAGGAGGAATTCAAAAGGCTGACCACAATCTCATAGGCATTGTCAATCTGATCTTTCGCTCCGTCTCCAATTGCTCCCTTATTCCCTCGACCAAAGTCCAAACTATGTGTAGCTACCTTATTTTTCTTACTGTGATCTTATTTTGGGTGGTACTTGATCAACTTAGCTCGAAAACAGTAGTCAATACTTTAGAAGAGCATGAAAGCATTACAGAGCCATAAAGCAGAGAGAAATTAACCCATTTATTGTTAATAAATACTACCAGAATGGTAGAACAAACAGTACGAGTATAGTAATCTTCTAATACAAAATGAGGCTGTACCTAATTTGGGTTTATATATTAGTTGAAATGTAATGCTTAAGATAGTTAAAATGGTCCAATTTCAGAAATTAGAAGTTCTGCAACATCTTAATATGATATGAGATGGAGAACATGCATCTTTAAGAAATGCTGTTTTTGATGACTAATTGCATAATTGGGAGTGGTTGGATCGACTTTCTAATCTTTTTCCAATTGTATTCTTGGCAGATAAAAGGGTTTGGCTTTTGTCATGGACCCAAGCTACCATGCACTTCTCAATTGCAG-TTTTTTGGATTACTTGGGCTCCAACCATTGTGGTATGATTCTGATAAGATTT</genome_strand>
        <mrna_strand>ATCTTTTTGTTG-CATATGGCGGAGGGTGACTGGACATCCAAGTATTTGGCTCGCTAGCATCTGTCTCTCTCTTGCCTCTACGATATTTTTCTTCAACTTCGAGACATGGATTGTTTGTTGAGCATGATAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGAGCAGAGGCAGGATTCAGTGAATGACATGTTTTGGTTTATGACTTTTTGTTGAATCTGCATCTTTTATTGGAAGCCAAGTGGTTGGTAACTGGTTAATTGGTGGTCATGAAAAGACAAGTTTGCTTGCTCCGTCCAGTGCAGTGGTAATAATGGCTCTTAATGCTCTGGCTTATGTCAG-CGAGGATGGAAGGAAGATCCCAAATCAATTCTTCTTAAAGATTATCAGACTAAATTCCGTACATACATACTCAGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAAGGGTTTGGCTTTTGTCATGGACCCAAGCTACCATCCACTTCTCAATTGCAGTTTTTTTGGATTACTTGGGCTCCAACCATTGTGGTATGATTTTGACAAGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E425819" ref_strand="+" ref_description="SGN-E425819 [STM-45-J23]">
      <seq>gagaagtttccttttactctattcgctttcttcagtaatggaaggcttgttggcagtatttggagagtacgacttggcgttccatggcattagtagggagcagatggtcatctctctatgtattggatacacaactgctctctttgtcggtacctttttgggcatgctctcggatttgattggccagagaaaagtcagcttgttattttgcttgctgcatctttttgttgccatatggcggagggtgactggacatccaagtatttggctcgctagcatctgtctctctcttgcctctacgatatttttcttcaacttcgagacatggatggttgttgagcatgataagcttgagcagaggcaggattcagtgaatgacatgttttggttaatgacttttgttgaatctgcatcttttattggaagccaagtggttggtaactggttaattggtggtcatgaaaagacaagtttgcttgctccgtccagtgcagtggtaataatggctcttagtgctctggcttatgtcagccgaggatggaaggaagatccaaaatcaattcttcttaaagattatcagactaaattccgtacatacatactcagtgataaaagggttttggcttttgtcatggacccaagctaccatccactttctcattgcagtttttttggattacttgggctccaaccattgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="73626" stop="69602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73326" g_stop="73292" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73291" i_stop="72458" i_length="834">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72457" g_stop="72313" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="180" r_length="145" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72312" i_stop="71847" i_length="466">
            <donor d_prob="0.955" d_score="0.96"/>
            <acceptor a_prob="0.869" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71846" g_stop="71678" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="349" r_length="169" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71677" i_stop="71131" i_length="547">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71130" g_stop="70872" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="608" r_length="259" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70871" i_stop="69992" i_length="880">
            <donor d_prob="0.911" d_score="0.90"/>
            <acceptor a_prob="0.990" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69991" g_stop="69902" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="700" r_length="92" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E425819" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E425819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73326" e_stop="73292"/>
          <exon e_start="72457" e_stop="72313"/>
          <exon e_start="71846" e_stop="71678"/>
          <exon e_start="71130" e_stop="70872"/>
          <exon e_start="69991" e_stop="69902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAGTTTCCTTTTACTCTATTCGCTTTCTTCAGGTGACGTTATTTTCCGAGTTGTTTTTTTCTTCCCACTGAATGTAGTATTAGGAAATGTCGCGTTCTAATTAACTCCTAGAGTCTACTTGCTGCTAAAATTGGTGCGAGGTAGTGAACTTTACGTGTTTCCCTGTTTATTAACTGCTGGATTTCCTCTGTTACAAATGTTTGATATTTACCCTCTATTTTGCCAAAAGAGAAAAATGAAACTTCTAGCAGGTTCTGGATTTCATAATTTTAACTTAAAGAAATGAATTAAACTAGTCTGACTTAGTTCTGAAAATGGTCAAGTTGACGTCTCAAACTAATTGGATAGATGGACTATCTCTTAATTTGTATGTTGCTACATTGAGCATTTTATCAAGTTAGATATTTTTTTCATTTGTGGAACACTCAGGTTCACAAAAGTGGATTATCCTGTTGTTATAGTAGAGTAATAAACATCTATACAAATTTGGATCAATCAAATTCAAAAGTTTATTCAAGACTCAATGAAGTTATTCTAACATATGATATTAAAATGTTGATACGGGAACTTTACATTGAATGTGGAGTGTGAATTGATATACTGATACAAGTTGCTCCCGTATAATCTGTTTATTAGCATATTATGATAAGGCTGAGCTGACACCACAAAGTTGTCAATTATTATTTTAACTTGATAGAGATATCGTAGTTACTGATCATAGAACACATGTTAAGGTGTACGCGAAATCACATATTCCATAAAAAAAGTCACGCTTCCCTTTTTATTACATCCTCGATATATAAGTTTGTCCTTTTTATGATTGCTTGGATTCAAAATCGTTATTTATTTAATTTAACTTTTTACAGTAATGGAAGGCTTGTTGGCAGTATTTGGAGAGTACGACTTAGCATTCCATGGCATTAGTAGGGAGCAGATGGTCATCTCTCTATGTGTTGGATACGCAACTGCTCTCTTTGTCGGTACCTTTTTGGGAATGCTCTCGGATTTGATGTAAGGGTACCTGCCTAGTTTTCTGTGTTTACCATGTTCCATCTCTATTTGCATAACCATTATGGTATACTGCAAGTTGCCATTTTCATTCTTTTGGAAATCTATATATCATAAATTCAAAATCTTAGACTACGATTATTTGGTTCAACATCATAATGAAATAGAGCTTCCATTTTGGGAGATATTAAGTATCAATCTCATCTACGTTCCTTTGATGCATTCTTTTTAGACTAAGAGATCATTTTTCTAATAAACTGTCCAACAAAGCTTGAACTTGAAGCTATGTGTTTGACCAGTATATGTTCCAAAGTACTAAACTGTATTGGTCCATGATGATTATCATTATTGTTTTCAATCGTTTATTGTTCTCAAAATTGTGATGGAGCACCATAAGATAAATGATTTTTTTGATTAGTCAAGAATACCATCTGTCAAACTTATTATTATGTTGTCTCTCTTCCTGCAGTGGCCAGAGAAAAGTCAGCTTGTTATTTTGCTTGCTGCATCTTTTTGTTGCCGTATGGAGGAGGGTTACTGGACATCCAACTATTTGGCTCGCTAGCATCTGTCTGTCTCTTACCTCTACAATATTTTTCTTCAACTTCGAGACATGGATGGTTGTTGAGCATGATAAGGTTTGTCTTCGGAATCTCTTTTTGTTATTATTGTATGATTTGCTATTTCATGTGGGAAGTACTATTATGAAGACTTGTTAACTCAAAATGCTTATCCACTTTTTAAAATGAATAAATCTGGGAAATCTTTTTTATACCAAAAAAAGATGATGAATATATGTAGCAAATGCAAAGGGGTTAGGATGGGGGAGTATGGATGTATACTCTATAGTCTTTCAGAGTTTCTTTCTTTGTCAACTACATAAGTTTATTTTGGACCTATTTTGCCGTAGCAGCATATGTGATCACATTTGAAAAAGATGATGAATAAATGTAGCAAATGCAAAGGGGTTAGGGTGGGGGAGTGTGGATCTATAGTCTTTTAGAGTTTCTTTCTCTGCCAACTACATCAGCCTATTTTGGACCTATTCTTCCATAGCAGCATATGTGATCACATTTGAACATTTTTCTCGGTCGGGGAGTCTTCACAGTCAGATTTCAGATCTCTGTATGAATTTGAATCGTTGATAGTAGAGTAAGATGAGTTATCCTTATAATCATTTTGCAGCTTGAGCAGAGGCAGGATTCAGTGAATGACATGTTTTGGTTAATGACTTTTGTTGAATCTGCATCTTTCATTGGAAGCCAAGTGGTTGGTAACTGGTTAATTGGTGGTCATGAAAAGACAACTTTGCTTGCTCCGTCCAGTGCAGTGGTAATAATGGCTCTTAGTGCTCTGGCTTATGTCAGCCGAGGATGGAAGGAAGATCCAAAATCAATTATTCTTAAAGAATATCAGACTAAATTTCATACATACATAATCAGTGGTATGAGTCCTCTATTATTATTCTTATGTTCCTTTTCCTGAAGATATAACTTTCTGTTGTCACAACTTAACTGAGGGACACATTTCCATAGCTAACTGTGACACTAAAAGAAATATTTGATCAATTCTGTGGATCTCCCGATAAAAAGATTCTATAAATTAGTAATATCAGATAAGTTTTACCACTGAAATCCACAATTCGAATATTGGAATTCTTGGATAGTCACAAGAAATCTGGCTTAACTTATTTCCTTACTCTTTTGCGCTTCCCTTTCCAGTAAAAGGAGGCAATGTGCCACATTTGAGTTAAAAAGAAGAAAGGGGCGGTGATAGAAAGAGAGGGAAAGTAAGGAAGGAGGAATTCAAAAGGCTGACCACAATCTCATAGGCATTGTCAATCTGATCTTTCGCTCCGTCTCCAATTGCTCCCTTATTCCCTCGACCAAAGTCCAAACTATGTGTAGCTACCTTATTTTTCTTACTGTGATCTTATTTTGGGTGGTACTTGATCAACTTAGCTCGAAAACAGTAGTCAATACTTTAGAAGAGCATGAAAGCATTACAGAGCCATAAAGCAGAGAGAAATTAACCCATTTATTGTTAATAAATACTACCAGAATGGTAGAACAAACAGTACGAGTATAGTAATCTTCTAATACAAAATGAGGCTGTACCTAATTTGGGTTTATATATTAGTTGAAATGTAATGCTTAAGATAGTTAAAATGGTCCAATTTCAGAAATTAGAAGTTCTGCAACATCTTAATATGATATGAGATGGAGAACATGCATCTTTAAGAAATGCTGTTTTTGATGACTAATTGCATAATTGGGAGTGGTTGGATCGACTTTCTAATCTTTTTCCAATTGTATTCTTGGCAGATAAAAGGGTTT-GGCTTTTGTCATGGACCCAAGCTACCATGCACTTCTCAATTGCAG-TTTTTTGGATTACTTGGGCTCCAACCATTGTGG</genome_strand>
        <mrna_strand>GAGAAGTTTCCTTTTACTCTATTCGCTTTCTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGGAAGGCTTGTTGGCAGTATTTGGAGAGTACGACTTGGCGTTCCATGGCATTAGTAGGGAGCAGATGGTCATCTCTCTATGTATTGGATACACAACTGCTCTCTTTGTCGGTACCTTTTTGGGCATGCTCTCGGATTTGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCAGAGAAAAGTCAGCTTGTTATTTTGCTTGCTGCATCTTTTTGTTGCCATATGGCGGAGGGTGACTGGACATCCAAGTATTTGGCTCGCTAGCATCTGTCTCTCTCTTGCCTCTACGATATTTTTCTTCAACTTCGAGACATGGATGGTTGTTGAGCATGATAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGAGCAGAGGCAGGATTCAGTGAATGACATGTTTTGGTTAATGACTTTTGTTGAATCTGCATCTTTTATTGGAAGCCAAGTGGTTGGTAACTGGTTAATTGGTGGTCATGAAAAGACAAGTTTGCTTGCTCCGTCCAGTGCAGTGGTAATAATGGCTCTTAGTGCTCTGGCTTATGTCAGCCGAGGATGGAAGGAAGATCCAAAATCAATTCTTCTTAAAGATTATCAGACTAAATTCCGTACATACATACTCAGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAAGGGTTTTGGCTTTTGTCATGGACCCAAGCTACCATCCACTTTCTCATTGCAGTTTTTTTGGATTACTTGGGCTCCAACCATTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E201886" ref_strand="+" ref_description="SGN-E201886 [cLEC-18-E9]">
      <seq>tcatcttcgtatgagttcatatttcataatgacaacccaataatggcaactctcaatcatgtgttccactgtgtagtctcctttaaatgttctgtaatttggctcatgtagcatgtgaattgtttagtcactcttcttacatagatactggctatgtggttcagtactcctatctttctccttgtactttgaaaatctgaatttaggcaattcgattgttttttatgtcttattagattgtcttttgtctttcttttccagccttctacgatatttctgtgatgttgtataacttctgccaaaaaaaattttcttaggctttcaataggagatagcctaagtaaagagtcgcattcaagtctgaacaataatctttatggctctgcttatcagtgtctacacagattttcttaccgggtgaactatttttatgtcttctttcagcctctgataattcattagtgtctttagagttcatcttgattgatgtttgttttgatccttcactaacttgtatttattgttgcggatgatggcagtgcaaggtgtgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="75111" stop="76263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75411" g_stop="75963" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E201886" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75411" e_stop="75963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTTCGTATGAGTTCATATTTCATAATGACAACCCAATAATGGCAACTCTCAATCATGTGTTCCACTGTGTAGTCTCCTTTAAATGTTCTGTAATTTGGCTCATGTAGCATGTGAATTGTTTAGTCACTCTTCTTACATAGATACTGGCTATGTGGTTCAGTACTCCTATCTTTCTCCTTGTACTTTGAAAATCTGAATTTAGGCAATTCGATTGTTTTTTATGTCTTATTAGATTGTCTTTTGTCTTTCTTTTCCAGCCTTCTACGATATTTCTGTGATGTTGTATAACTTCTGCCAAAAAAAATTTTCTTAGGCTTTCAATAGGAGATAGCCTAAGTAAAGAGTCGCATTCAAGTCTGAACAATAATCTTTATGGCTCTGCTTATCAGTGTCTACACAGATTTTCTTACCGGGTGAACTATTTTTATGTCTTCTTTCAGCCTCTGATAATTCATTAGTGTCTTTAGAGTTCATCTTGATTGATGTTTGTTTTGATCCTTCACTAACTTGTATTTATTGTTGCGGATGATGGCAGTGCAAGGTGTGCAT</genome_strand>
        <mrna_strand>TCATCTTCGTATGAGTTCATATTTCATAATGACAACCCAATAATGGCAACTCTCAATCATGTGTTCCACTGTGTAGTCTCCTTTAAATGTTCTGTAATTTGGCTCATGTAGCATGTGAATTGTTTAGTCACTCTTCTTACATAGATACTGGCTATGTGGTTCAGTACTCCTATCTTTCTCCTTGTACTTTGAAAATCTGAATTTAGGCAATTCGATTGTTTTTTATGTCTTATTAGATTGTCTTTTGTCTTTCTTTTCCAGCCTTCTACGATATTTCTGTGATGTTGTATAACTTCTGCCAAAAAAAATTTTCTTAGGCTTTCAATAGGAGATAGCCTAAGTAAAGAGTCGCATTCAAGTCTGAACAATAATCTTTATGGCTCTGCTTATCAGTGTCTACACAGATTTTCTTACCGGGTGAACTATTTTTATGTCTTCTTTCAGCCTCTGATAATTCATTAGTGTCTTTAGAGTTCATCTTGATTGATGTTTGTTTTGATCCTTCACTAACTTGTATTTATTGTTGCGGATGATGGCAGTGCAAGGTGTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E746958" ref_strand="+" ref_description="SGN-E746958 [GI|47104324]">
      <seq>cctgtggagagtgaaaagggtcccaatagcagcatacaagagagagcaaaaagctttcccaatctatggctttttcctaaaaatggtgtgtgagtaaagtagtgttattgctctggcggttgcatcaaacagaagcggggcccaattccttcgttgcatctacccagcctgcgtcttctttgttgtcccttttccgaaatccgatacctttatcaataactcttcagtctctgatttccggataaaccatgtccaaagctcgagtatacaccgatatcaatgtgcttcgtcctagggaatattgggattacgaatcgctaactgttcaatggggtgatcaggatgactatgaggttgttcgaaaagttggaagaggaaaatacagtgaagtttttgaaggtataaatgttaacagcagggagaagtgcataatcaagatcctgaaacctgttaagaagaaaaagatcaaaagagagataaagatattgcaaaatctctgtggtggaccaaatattgtcaaactccttgatatcgtcagagatcagcattcaaaaactccaagcttgatttttgagtacgtgaacagcacagatttcaaggttttgtacccaacgctaacagactatgacatacggtactacatatatgagcttctcaaggcactagattattgccattcacagggaataatgcacagggatgtcaaacctcataacgttatgatagaccatgaactgcggaagcttcgcttgatagattggggtcttgccgaattttaccacccagggaaggaatataatgttcgtgtggcttcaagatacttcaagggccctgaacttctagttgacttgcaagactatgactattctttggacatgtggagccttggctgcatgtttgcaggaatgattttccgcaaggaacctttcttttatggccatgataatcaggatcagctcgtcaaaattgcaaaggtacttgggacagatgagttgaatgcgtacttgcacaagtatcaactagagcttgatcctcagctagaggctatggttgggagacacagtaggaagccgtggtccaaatttattaatgcagacaatcagcatctagtgtcaccggaggctatagattatcttgacaagcttctccgttacgatcatcagactagacttacggcaaaagaagcaatggcccatccatatttcgggcaagtgagggctgctgaaactagcagaatgaggacacagtagctttcttgtcttgctgttaatgggaagaaaaaactgtgtaatgtaccttgtgtatccatttaagtgacattcgtgagaactatgtggatttgaacttgagcagacatctgaattcaggaattacagatcttcatcattgaacatttcaagagaaatagtgttttttagatttcctgatcgtgaccttgattgcaaatggaagtgacttgctgggcgtcaaaagtcaccccacccccccttccccaaagatactatctccctagatgtgaacaaaagcagatttttgaaaattagttcactttgtatattaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="83618" stop="76233"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83318" g_stop="82985" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82984" i_stop="81809" i_length="1176">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81808" g_stop="81679" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="464" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81678" i_stop="81120" i_length="559">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.273" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81119" g_stop="80925" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="659" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80924" i_stop="79445" i_length="1480">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79444" g_stop="79287" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="660" r_stop="817" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79286" i_stop="78441" i_length="846">
            <donor d_prob="0.568" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78440" g_stop="78350" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="818" r_stop="908" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78349" i_stop="78164" i_length="186">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="78163" g_stop="78098" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="909" r_stop="974" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="78097" i_stop="77908" i_length="190">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="77907" g_stop="77825" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="975" r_stop="1057" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="77824" i_stop="77637" i_length="188">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="77636" g_stop="77573" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1058" r_stop="1121" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="77572" i_stop="77438" i_length="135">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="77437" g_stop="77369" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1122" r_stop="1190" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="77368" i_stop="76905" i_length="464">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="76904" g_stop="76533" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1191" r_stop="1560" r_length="370" r_score="0.995"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="76532" i_stop="76456" i_length="77">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.625" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="76455" g_stop="76442" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1561" r_stop="1574" r_length="14" r_score="0.643"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E746958" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1576</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83318" e_stop="82985"/>
          <exon e_start="81808" e_stop="81679"/>
          <exon e_start="81119" e_stop="80925"/>
          <exon e_start="79444" e_stop="79287"/>
          <exon e_start="78440" e_stop="78350"/>
          <exon e_start="78163" e_stop="78098"/>
          <exon e_start="77907" e_stop="77825"/>
          <exon e_start="77636" e_stop="77573"/>
          <exon e_start="77437" e_stop="77369"/>
          <exon e_start="76904" e_stop="76533"/>
          <exon e_start="76455" e_stop="76442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGTGGAGAGTGAAAAGGGTCCCAATAGCAGCATACAAGAGAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGGGTAAATATTTTCCCTTATTTAACCCTAATCGCTTTTGATTTTGTTTTTAGTTTTGGGGGTTTGTATACTGGATAATAGATTGAAATTCTTGAATTAGATGCTGTTTATTACCTTTTTTTAAAAAGATTGTTTGGTAAAATAATAACATCCACTTCTAGCATCCAAGAAAATAGTTTTTGCTTATGTTTCCTTGTTTTTTCCGTCTGAAGTAAAAAGTGGGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGGTATGTTTCCTTGTTTTTTTCGTCTGAAAGAAAAGTGGGTGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGTTATGTTTCCTTTTTTAAAGATAAGTGGAGGTTACATAGCATTGTAACATCCACTCCAGGGGTGGGTGAAACCTGAAAACAAATGTTGGGTTTCTTATTCCTATTTTTTGTCTAATAGATAATTGTGTGATCAGTGTTAGATGCTATTTTGGCGAATTCCTGCTATCTTGAATGGAATGACTTTCACATTGGAAAATACCTATTGGGTTAATGCAAAACTCCTGTCTAGTCTTGTTGAACTGAGTCTGTATTTTGTGGCTCCAGATTAGGTTGGGCTTCAAGTCTTTATATGTTTGTTACTTCTATATTAGCTTCCACATGATACAATGGAAGCTAAATAACAAATATAATATACCAATTAGTTGAGTTATATACCAATTTGTTGAGTTTAAGGATTGGTCCTGCTGGTGCACATTTGGACTGAAGTAAATGTTTGTGTAAGTCTTGTAATAAGAGTGAGATTTACAACCCGTTGTGTTAAAAGTTGAATTATTGAATACTTGAATGGAACAGCCCCGAAGTGGAGTGGATAATTATAGAGGCTTCATTTAGTTGACACCAGTTAGTTTATTTTTGTTATTGTATAGTTCTGCTGCATTTATCAAGATGAGAGCATTTTGTGTAACAAGAACTATATAAATGTCTTGCTAAAGTGGGAGAATATAGTTTGTTAATCTTGGTTCTAGAGTACCTTGACCCTTGGCTCAACGATTAGTTTTATCTTACACAAGTATTGGTTTCAGATATGATTCTATTTGACTTACTCAACTTTAATGCACCAGCTACATTGTATTATCCTCACTAGTGCATGTCATATTTATTATTGTAGTGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAGGTAAGATGATAAACACATCAGATGGCAGTCAATATGGCTTTTATGTATTCATGCTCCCTCTCCCCTGATTCTTTTTTTTTTTTTTAAGGAAGGTAACAGTTATATACTTCCTGTCCTCTTGGTCCTCCTTTTCTGTATCTTCTTTCTTCTCTCAGAACCAAGAATAGAGTTGTACTGATGTCTTAACTTACTATCTGGTCAAAACTTTGTTTGTCTCCAACATTTCCTTCTATTGCAGCTTTTCAAGGTTTGTATGAGTATGAGAATTTTGGGAGTCCCCAGTTTTCTTATGCTCAGCAACTATTTCTGAATTGAGTGGATATATTCTCATATACTATGATCAAATTATGAGATCAAACTATCAAAGTTATAACTCCTAGGCTCATCTCAAGTGGAAATTTTGGAATCCAAGATTCTGGTGCCATAAAACTGCACTAATTTGGATTCATCTTATATCTATATTTAGATAATTGGGAGTCTGTCGAATGTGTCTCGTGATCTTGGGTTAGTGGGAATGACTAAGACTGTAAACTCATATTTGTTCACCTTATCCTGCCTGCCAATACATGGATTTCAAATCCATCATCAAAAATGTAGATTTTTCTTATTGATATTGTCAGCTCATTCACTGTCTTGGTCATTCCAATTGATTACCTTTCCTCTGCAATTCGGTCTAAGTATAGCTTCTGAATGTGTTTTTTACAAGGTAAATGACCTCATAGTGAGGTGCTTACCATGTCTCTTGTTATCAGATGATATGAATTAGATTCACTGCATGCCTATTGGAAGTTGATTTTATATCTAGATTAATGGCTATGCTCGTTGTTACTCTTAACAATGTGACATTTTTTTTCTGACTTTGGATTTCTTAAGTAACTCTCTTGTATTCTTCTGATCTTATAATTGGTTAAGGAAAAAAAATTCACCAATGCCATGGATATTCTCTCCTCTGTTTGCTAATTGCTATTTAAATTTCATTTTCCTTTTTCACGAGTAATATTATATTCCCTTTTTGTCTGATTTGCGTGAGAGTAACTATTTGGAAATGGGGATGCTAATTATTGGATCCTGTTGATTTCTATCTCGAAGTTAGTTCTTCCTTTTTGCTACATGCCTACATCACCAGCCTACCTGATCATATGTCTAGGTTTCCTTTCTTTTGCCTCCTCCTGCGAAAAAAAGAAAAGAAATTTAACTTCTCAAGCTTTCTCATTGTGTATCAGCATAATTGTTTGTCAAATGCTAGATCTGTTCCTGCATACTTACTTTCCATTCGCTTAATTTACTCTATTAATTTCCCCTTCTTTTTTGAAAGAAAAGAAAGAATCACGTTTTTGGCATGACTGCTGAATTTGCTGAGGCCTTCATTTCTTGTGACAGTTGTTTAATAGACTCTTTGGGACCTATTCTTTGTGTACATTTCTTGACATGCTTACCAATTTATGGAGGTCGAAAACTGAAACTTCTTATCAACCTGCAGGCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAGGTGAGATAATCTGCCGACAGTATGGCTGGACCGGCATAGTTGCTTTGCCAGCAACAACTTCCTACATATAGCATTGCTATTTGTAGATCCATGCTCTACTTGCAAATTATTCTCTGGACAAGTCATGAGTTTTTAATCAGAAAGCAAGTGACATTGTTATATATTTTTTAAGTCAGAAATAATAAAAGGAACATCATTCACTTACATATACAACAACTACCCGTCAGTTCCAAACTAGTCGGGGTCGTTATATGATTTTTGCTGTCCATGTTACTCCATTTAATCCCATATCTTGCGGACTTGTAAAGTTTAGAATCTCTATATTTTCTTAACTGACAAACTTCTGAAAAGCTAAAACACTCCTAGAAAGTATAGGACCTACAGGAAAATTCTAATATATTAATATATTCTCGACTAATATGTAGCATATATATAGAATTTTTTCTTCCATTGTGCCTTTCGTAAGTTCACATGGATCCTTAAAATTATAGGTCCTTAAAGACAACTTCCTTCCATGTGATTTTAGGTCTACTTCGTTTTTTAACAGCTCCACTCACCATAGTTTCACACTCAGGAGTCAGTGCATCAGGAGGGGTTAATGCAAGACATAATCAAATCATCTCAAGGAACAGCTGAGTTCTTAAAGAATACTTAAAACAATACCCATTAAAGAATACTTAAAACAATCAATGGGATTATAGGAAAAGGTTAGGAATTGTTTATGTAAAACTAATTCTGTATCAGCATAGCTGCATATGGGAAATTGGTTTTGTACCGTAAGTTAGTGGTTCATAAACTATCAATGCTATTGAAGCAAGTCTGAGTTCTTCTTTTCTTGCACTTCAGATACTTCAAGGGCCCTGAACTTCTAGTTGACTTGCAAGACTATGACTATTCTTTGGACATGTGGAGCCTTGGCTGCATGTTTGCAGGAATGGTGAGAAATTCTATGATTCATAATATAAGCTGTCAGTTGGTTTATAGTTTTATGCTATCAGTTGTGGGCCTGGGAAACTACAAACATCCGAAAGGACTTGTTAGAAGTTTGTATTTTGCTTATTTGAAATCAATTTTCCTTTTCCTCCTGTTTTCTTTGTGTCTGACCATACCTTTTCCTTGGTAGATTTTCCGCAAGGAACCTTTCTTTTATGGCCATGATAATCAGGATCAGCTCGTCAAAATTGCAAAGGTAATGCGTAGTAACTGACCAGTGACCAATGGGTTTATATACCTTAATTTTGTTGTTTGAGTGAGAGGGGGGAAGTTGATCATCTGAAAACAACCAAAGAAGTTGTTACTTCAGTTGCAAGTGAACACTCAATTTATAGAAGTAAAGCATAACTGCTTGACATGGAGTTGATAGATTATTGTTGTTATAGGTACTTGGGACAGATGAGTTGAATGCGTACTTGCACAAGTATCAACTAGAGCTTGATCCTCAGCTAGAGGCTATGGTTGGGAGGTATGCTTCTTGCTTTATCGCCAAGATAAAACTACGCTAAGGCAATTTGCAAAATAACTTAGAGCTGTGACTAAATAGGGTTACCAAGTTGATCTTAGCAACTAGCTTTAGCAGATGTGTGTCCTCTCTCATTAATTGCCAAAATTCTTAGCTATTGAAGGTGAATACAATCTGTCTTTCCCCTGCAGACACAGTAGGAAGCCGTGGTCCAAATTTATTAATGCAGACAATCAGCATCTAGTGTCACCGGAGGTACTCTTCTCTCTCTATTTATGTATCTATGGTATTTCTGAATAAGACGAAACCAGCAATGGTGACAAGTACATCTCAACCAATTGGCTGTTCTTCACTACCCACTTGATAATTGATTTTGGCTTCTCATTGCAGGCTATAGATTATCTTGACAAGCTTCTCCGTTACGATCATCAGACTAGACTTACGGCAAAAGAAGCAATGGTAATCCTCTTTATCCACTATTAATGAGCTTTAAACTCTGAGCCTCATCATTTTCTTCTCAGCTTCTGTCTTATATTGGTTTACTATTGCTTATTAAAGAAAATGGTTTCGTGACATTTTAAAACACATACTTTACCAAAACCAAAATGTAAGGTTATAAATAAATGAGATCAGTGAGGATGAGTGGGTGAAGAGACGCAACTTGACTAGTTTTTTGTTTTGAAATTCTGTTAGAAACAAGCTGGTGATTGTGAAGTGTCAGTGCTTTCTGTTTCTGCTCTTGGCTATGTTTTTTTCCTTTGTCATGATGTTGCATCTGCATCTTTCCTGGAATCAATCCACTCTCCCTTCTCAATTATTTCTTTTAACAACACTATACATGTATTTGTTTTGTTTTGCACAACTAGAGTATTGAACAGTGTGTTGGGAAACCTACTAACTGCTTTCTCTGCCCTGTTTCTTAGGCCCATCCATATTTCGGGCAAGTGAGGGCTGCTGAAACTAGCAGAATGAGGACACAGTAGCTTTCTTGTCTTGCTGTTAATGGGAAGAAAAAAAACTGTGTAATGTACCTTGTGTATCCATTTAAGTGACATTCGTGAGAACTATGTGGATTTGAACTTGAGCAGACATCTGAATTCAGGAATTACAGATCTTCATCATTGAACATTTCAAGAGAAATAGTGTTTTTTAGATTTCCTGATCGTGACCTTGATTGCAAATGGAAGTGACTTGCTGGGCGTCAAAAGTCACCCCACCCCCCCTTCCCCAAAGATACTATCTCCCTAGATGTGAACAAAAGCAGATTTTTGAAAATTAGTTCACTTTGTATATTAGTGCACTGGATTTTTCTGCATTCAGCTTTGGTGGTTTGTCTTTTGTGTAAGTTCATTGATATGGTGTAGGGCTATAGAAGAATGAAGAGAA</genome_strand>
        <mrna_strand>CCTGTGGAGAGTGAAAAGGGTCCCAATAGCAGCATACAAGAGAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTCAAGGGCCCTGAACTTCTAGTTGACTTGCAAGACTATGACTATTCTTTGGACATGTGGAGCCTTGGCTGCATGTTTGCAGGAATG..........................................................................................................................................................................................ATTTTCCGCAAGGAACCTTTCTTTTATGGCCATGATAATCAGGATCAGCTCGTCAAAATTGCAAAG..............................................................................................................................................................................................GTACTTGGGACAGATGAGTTGAATGCGTACTTGCACAAGTATCAACTAGAGCTTGATCCTCAGCTAGAGGCTATGGTTGGGAG............................................................................................................................................................................................ACACAGTAGGAAGCCGTGGTCCAAATTTATTAATGCAGACAATCAGCATCTAGTGTCACCGGAG.......................................................................................................................................GCTATAGATTATCTTGACAAGCTTCTCCGTTACGATCATCAGACTAGACTTACGGCAAAAGAAGCAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCATCCATATTTCGGGCAAGTGAGGGCTGCTGAAACTAGCAGAATGAGGACACAGTAGCTTTCTTGTCTTGCTGTTAATGGGAAG--AAAAAACTGTGTAATGTACCTTGTGTATCCATTTAAGTGACATTCGTGAGAACTATGTGGATTTGAACTTGAGCAGACATCTGAATTCAGGAATTACAGATCTTCATCATTGAACATTTCAAGAGAAATAGTGTTTTTTAGATTTCCTGATCGTGACCTTGATTGCAAATGGAAGTGACTTGCTGGGCGTCAAAAGTCACCCCACCCCCCCTTCCCCAAAGATACTATCTCCCTAGATGTGAACAAAAGCAGATTTTTGAAAATTAGTTCACTTTGTATATTA.............................................................................AAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E215366" ref_strand="+" ref_description="SGN-E215366 [cLEL-20-A23](-)">
      <seq>tcagcatctagtgtcaccgaaggctatagattatcttgacaagcttctccgttacgatcatcagactagacttacggcaaaagaagcaatggcccatccatatttcgggcaagtgagggctgctgaaactagcagaatgaggacacagtagctttcttgtcttgctgttaatgggaagaaaaaaaactgtgtaatgtaccttgtgtatccatttaagtgacattcgtgagaactatgtggatttgaacttgagcagacatctgaattcaggaattacagatcttcatcattgaacatttcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="77894" stop="76386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77594" g_stop="77573" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77572" i_stop="77438" i_length="135">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77437" g_stop="77369" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="91" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77368" i_stop="76905" i_length="464">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76904" g_stop="76686" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="310" r_length="219" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76685" i_stop="76456" i_length="230">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.625" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76455" g_stop="76447" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="319" r_length="9" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E215366" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>319</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77594" e_stop="77573"/>
          <exon e_start="77437" e_stop="77369"/>
          <exon e_start="76904" e_stop="76686"/>
          <exon e_start="76455" e_stop="76447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCATCTAGTGTCACCGGAGGTACTCTTCTCTCTCTATTTATGTATCTATGGTATTTCTGAATAAGACGAAACCAGCAATGGTGACAAGTACATCTCAACCAATTGGCTGTTCTTCACTACCCACTTGATAATTGATTTTGGCTTCTCATTGCAGGCTATAGATTATCTTGACAAGCTTCTCCGTTACGATCATCAGACTAGACTTACGGCAAAAGAAGCAATGGTAATCCTCTTTATCCACTATTAATGAGCTTTAAACTCTGAGCCTCATCATTTTCTTCTCAGCTTCTGTCTTATATTGGTTTACTATTGCTTATTAAAGAAAATGGTTTCGTGACATTTTAAAACACATACTTTACCAAAACCAAAATGTAAGGTTATAAATAAATGAGATCAGTGAGGATGAGTGGGTGAAGAGACGCAACTTGACTAGTTTTTTGTTTTGAAATTCTGTTAGAAACAAGCTGGTGATTGTGAAGTGTCAGTGCTTTCTGTTTCTGCTCTTGGCTATGTTTTTTTCCTTTGTCATGATGTTGCATCTGCATCTTTCCTGGAATCAATCCACTCTCCCTTCTCAATTATTTCTTTTAACAACACTATACATGTATTTGTTTTGTTTTGCACAACTAGAGTATTGAACAGTGTGTTGGGAAACCTACTAACTGCTTTCTCTGCCCTGTTTCTTAGGCCCATCCATATTTCGGGCAAGTGAGGGCTGCTGAAACTAGCAGAATGAGGACACAGTAGCTTTCTTGTCTTGCTGTTAATGGGAAGAAAAAAAACTGTGTAATGTACCTTGTGTATCCATTTAAGTGACATTCGTGAGAACTATGTGGATTTGAACTTGAGCAGACATCTGAATTCAGGAATTACAGATCTTCATCATTGAACATTTCAAGAGAAATAGTGTTTTTTAGATTTCCTGATCGTGACCTTGATTGCAAATGGAAGTGACTTGCTGGGCGTCAAAAGTCACCCCACCCCCCCTTCCCCAAAGATACTATCTCCCTAGATGTGAACAAAAGCAGATTTTTGAAAATTAGTTCACTTTGTATATTAGTGCACTGGATTTTTCTGCATTCAGCTTTGGTGGTTTGTCTTTTGTGTAAGTTCATTGATATGGTGTAGGGCTATAGAAGAATGAA</genome_strand>
        <mrna_strand>TCAGCATCTAGTGTCACCGAAG.......................................................................................................................................GCTATAGATTATCTTGACAAGCTTCTCCGTTACGATCATCAGACTAGACTTACGGCAAAAGAAGCAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCATCCATATTTCGGGCAAGTGAGGGCTGCTGAAACTAGCAGAATGAGGACACAGTAGCTTTCTTGTCTTGCTGTTAATGGGAAGAAAAAAAACTGTGTAATGTACCTTGTGTATCCATTTAAGTGACATTCGTGAGAACTATGTGGATTTGAACTTGAGCAGACATCTGAATTCAGGAATTACAGATCTTCATCATTGAACATTTCAAAAAAAAAA......................................................................................................................................................................................................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E551253" ref_strand="+" ref_description="SGN-E551253 [TUS-11-B21]">
      <seq>cagcatctagtgtcaccggaggctatagattatcttgacaagcttctccgttacgatcatcagactagacttacggcaaaagaagcaatggcccatccatatttcgggcaagtgagggctgctgaaactagcagaatgaggacacagtagctttcttgtcttgctgttaatgggaagaaaaaaaactgtgtaatgtaccttgtgtatccatttaagtgacattcgtgagaactatgtggatttgaacttgagcagacatctgaattcaggaattacagatcttcatcattgaacatttcaagagaaatagtgttttttagatttcctgatcgtgaccttgattgcaaatggaagtgacttgctgggcgtcaaaagtcaccccacccccccttccccaaagatactatctccctagatgtgaacaaaagcagatttttgaaaattagttcactttgtatattagtgcactggatttttctgcattcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="77893" stop="76209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77593" g_stop="77573" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77572" i_stop="77438" i_length="135">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77437" g_stop="77369" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="90" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77368" i_stop="76905" i_length="464">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76904" g_stop="76509" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="486" r_length="396" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76508" i_stop="76456" i_length="53">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.625" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76455" g_stop="76447" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="495" r_length="9" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E551253" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77593" e_stop="77573"/>
          <exon e_start="77437" e_stop="77369"/>
          <exon e_start="76904" e_stop="76509"/>
          <exon e_start="76455" e_stop="76447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCATCTAGTGTCACCGGAGGTACTCTTCTCTCTCTATTTATGTATCTATGGTATTTCTGAATAAGACGAAACCAGCAATGGTGACAAGTACATCTCAACCAATTGGCTGTTCTTCACTACCCACTTGATAATTGATTTTGGCTTCTCATTGCAGGCTATAGATTATCTTGACAAGCTTCTCCGTTACGATCATCAGACTAGACTTACGGCAAAAGAAGCAATGGTAATCCTCTTTATCCACTATTAATGAGCTTTAAACTCTGAGCCTCATCATTTTCTTCTCAGCTTCTGTCTTATATTGGTTTACTATTGCTTATTAAAGAAAATGGTTTCGTGACATTTTAAAACACATACTTTACCAAAACCAAAATGTAAGGTTATAAATAAATGAGATCAGTGAGGATGAGTGGGTGAAGAGACGCAACTTGACTAGTTTTTTGTTTTGAAATTCTGTTAGAAACAAGCTGGTGATTGTGAAGTGTCAGTGCTTTCTGTTTCTGCTCTTGGCTATGTTTTTTTCCTTTGTCATGATGTTGCATCTGCATCTTTCCTGGAATCAATCCACTCTCCCTTCTCAATTATTTCTTTTAACAACACTATACATGTATTTGTTTTGTTTTGCACAACTAGAGTATTGAACAGTGTGTTGGGAAACCTACTAACTGCTTTCTCTGCCCTGTTTCTTAGGCCCATCCATATTTCGGGCAAGTGAGGGCTGCTGAAACTAGCAGAATGAGGACACAGTAGCTTTCTTGTCTTGCTGTTAATGGGAAGAAAAAAAACTGTGTAATGTACCTTGTGTATCCATTTAAGTGACATTCGTGAGAACTATGTGGATTTGAACTTGAGCAGACATCTGAATTCAGGAATTACAGATCTTCATCATTGAACATTTCAAGAGAAATAGTGTTTTTTAGATTTCCTGATCGTGACCTTGATTGCAAATGGAAGTGACTTGCTGGGCGTCAAAAGTCACCCCACCCCCCCTTCCCCAAAGATACTATCTCCCTAGATGTGAACAAAAGCAGATTTTTGAAAATTAGTTCACTTTGTATATTAGTGCACTGGATTTTTCTGCATTCAGCTTTGGTGGTTTGTCTTTTGTGTAAGTTCATTGATATGGTGTAGGGCTATAGAAGAATGAA</genome_strand>
        <mrna_strand>CAGCATCTAGTGTCACCGGAG.......................................................................................................................................GCTATAGATTATCTTGACAAGCTTCTCCGTTACGATCATCAGACTAGACTTACGGCAAAAGAAGCAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCATCCATATTTCGGGCAAGTGAGGGCTGCTGAAACTAGCAGAATGAGGACACAGTAGCTTTCTTGTCTTGCTGTTAATGGGAAGAAAAAAAACTGTGTAATGTACCTTGTGTATCCATTTAAGTGACATTCGTGAGAACTATGTGGATTTGAACTTGAGCAGACATCTGAATTCAGGAATTACAGATCTTCATCATTGAACATTTCAAGAGAAATAGTGTTTTTTAGATTTCCTGATCGTGACCTTGATTGCAAATGGAAGTGACTTGCTGGGCGTCAAAAGTCACCCCACCCCCCCTTCCCCAAAGATACTATCTCCCTAGATGTGAACAAAAGCAGATTTTTGAAAATTAGTTCACTTTGTATATTAGTGCACTGGATTTTTCTGCATTCA.....................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E688193" ref_strand="+" ref_description="SGN-E688193 [t3_tus_11_b21]">
      <seq>cagcatctagtgtcaccggaggctatagattatcttgacaagcttctccgttacgatcatcagactagacttacggcaaaagaagcaatggcccatccatatttcgggcaagtgagggctgctgaaactagcagaatgaggacacagtagctttcttgtcttgctgttaatgggaagaaaaaaaactgtgtaatgtaccttgtgtatccatttaagtgacattcgtgagaactatgtggatttgaacttgagcagacatctgaattcaggaattacagatcttcatcattgaacatttcaagagaaatagtgttttttagatttcctgatcgtgaccttgattgcaaatggaagtgacttgctgggcgtcaaaagtcaccccacccccccttccccaaagatactatctccctagatgtgaacaaaagcagatttttgaaaattagttcactttgtatattagtgcactggatttttctgcattcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="77893" stop="76209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77593" g_stop="77573" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77572" i_stop="77438" i_length="135">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77437" g_stop="77369" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="90" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77368" i_stop="76905" i_length="464">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76904" g_stop="76509" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="486" r_length="396" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76508" i_stop="76456" i_length="53">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.625" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76455" g_stop="76447" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="495" r_length="9" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E688193" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77593" e_stop="77573"/>
          <exon e_start="77437" e_stop="77369"/>
          <exon e_start="76904" e_stop="76509"/>
          <exon e_start="76455" e_stop="76447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCATCTAGTGTCACCGGAGGTACTCTTCTCTCTCTATTTATGTATCTATGGTATTTCTGAATAAGACGAAACCAGCAATGGTGACAAGTACATCTCAACCAATTGGCTGTTCTTCACTACCCACTTGATAATTGATTTTGGCTTCTCATTGCAGGCTATAGATTATCTTGACAAGCTTCTCCGTTACGATCATCAGACTAGACTTACGGCAAAAGAAGCAATGGTAATCCTCTTTATCCACTATTAATGAGCTTTAAACTCTGAGCCTCATCATTTTCTTCTCAGCTTCTGTCTTATATTGGTTTACTATTGCTTATTAAAGAAAATGGTTTCGTGACATTTTAAAACACATACTTTACCAAAACCAAAATGTAAGGTTATAAATAAATGAGATCAGTGAGGATGAGTGGGTGAAGAGACGCAACTTGACTAGTTTTTTGTTTTGAAATTCTGTTAGAAACAAGCTGGTGATTGTGAAGTGTCAGTGCTTTCTGTTTCTGCTCTTGGCTATGTTTTTTTCCTTTGTCATGATGTTGCATCTGCATCTTTCCTGGAATCAATCCACTCTCCCTTCTCAATTATTTCTTTTAACAACACTATACATGTATTTGTTTTGTTTTGCACAACTAGAGTATTGAACAGTGTGTTGGGAAACCTACTAACTGCTTTCTCTGCCCTGTTTCTTAGGCCCATCCATATTTCGGGCAAGTGAGGGCTGCTGAAACTAGCAGAATGAGGACACAGTAGCTTTCTTGTCTTGCTGTTAATGGGAAGAAAAAAAACTGTGTAATGTACCTTGTGTATCCATTTAAGTGACATTCGTGAGAACTATGTGGATTTGAACTTGAGCAGACATCTGAATTCAGGAATTACAGATCTTCATCATTGAACATTTCAAGAGAAATAGTGTTTTTTAGATTTCCTGATCGTGACCTTGATTGCAAATGGAAGTGACTTGCTGGGCGTCAAAAGTCACCCCACCCCCCCTTCCCCAAAGATACTATCTCCCTAGATGTGAACAAAAGCAGATTTTTGAAAATTAGTTCACTTTGTATATTAGTGCACTGGATTTTTCTGCATTCAGCTTTGGTGGTTTGTCTTTTGTGTAAGTTCATTGATATGGTGTAGGGCTATAGAAGAATGAA</genome_strand>
        <mrna_strand>CAGCATCTAGTGTCACCGGAG.......................................................................................................................................GCTATAGATTATCTTGACAAGCTTCTCCGTTACGATCATCAGACTAGACTTACGGCAAAAGAAGCAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCATCCATATTTCGGGCAAGTGAGGGCTGCTGAAACTAGCAGAATGAGGACACAGTAGCTTTCTTGTCTTGCTGTTAATGGGAAGAAAAAAAACTGTGTAATGTACCTTGTGTATCCATTTAAGTGACATTCGTGAGAACTATGTGGATTTGAACTTGAGCAGACATCTGAATTCAGGAATTACAGATCTTCATCATTGAACATTTCAAGAGAAATAGTGTTTTTTAGATTTCCTGATCGTGACCTTGATTGCAAATGGAAGTGACTTGCTGGGCGTCAAAAGTCACCCCACCCCCCCTTCCCCAAAGATACTATCTCCCTAGATGTGAACAAAAGCAGATTTTTGAAAATTAGTTCACTTTGTATATTAGTGCACTGGATTTTTCTGCATTCA.....................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E270959" ref_strand="+" ref_description="SGN-E270959 [cLEM-22-C7]">
      <seq>agcatctagtgtcaccggaggctatagattatcttgacaagcttctccgttaccgatcatcagactagacttacggcaaaagaagcaatggcccatccatatttcgggccaagtgagggctgctgaaactagcagaatgaggacaccagtagctttcttgtcttgctgttaatgggaagaaaaaaaactgtgtaatgtaccttgtgtatccatttaagtgacattcgtgagaactatgtggatttgaacttgagcagacatctgaattcaggaattacagatcttcatcattgaacatttcaagagaaatagtgttttttagatttcctgatcgtgaccttgattgcaaatggaagtgacttgctgggcgtcaaaagtcaccccacccccccttccccaaagatactatctccctagatgtgaacaaaagcagatttttgaaaattagttcactttgtatattagtgcactggatttttctgcattcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="77892" stop="76209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77592" g_stop="77573" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77572" i_stop="77438" i_length="135">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77437" g_stop="77369" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="90" r_length="70" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77368" i_stop="76905" i_length="464">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.967" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76904" g_stop="76509" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="488" r_length="398" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76508" i_stop="76456" i_length="53">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.625" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76455" g_stop="76447" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="497" r_length="9" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E270959" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77592" e_stop="77573"/>
          <exon e_start="77437" e_stop="77369"/>
          <exon e_start="76904" e_stop="76509"/>
          <exon e_start="76455" e_stop="76447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATCTAGTGTCACCGGAGGTACTCTTCTCTCTCTATTTATGTATCTATGGTATTTCTGAATAAGACGAAACCAGCAATGGTGACAAGTACATCTCAACCAATTGGCTGTTCTTCACTACCCACTTGATAATTGATTTTGGCTTCTCATTGCAGGCTATAGATTATCTTGACAAGCTTCTCCGTTA-CGATCATCAGACTAGACTTACGGCAAAAGAAGCAATGGTAATCCTCTTTATCCACTATTAATGAGCTTTAAACTCTGAGCCTCATCATTTTCTTCTCAGCTTCTGTCTTATATTGGTTTACTATTGCTTATTAAAGAAAATGGTTTCGTGACATTTTAAAACACATACTTTACCAAAACCAAAATGTAAGGTTATAAATAAATGAGATCAGTGAGGATGAGTGGGTGAAGAGACGCAACTTGACTAGTTTTTTGTTTTGAAATTCTGTTAGAAACAAGCTGGTGATTGTGAAGTGTCAGTGCTTTCTGTTTCTGCTCTTGGCTATGTTTTTTTCCTTTGTCATGATGTTGCATCTGCATCTTTCCTGGAATCAATCCACTCTCCCTTCTCAATTATTTCTTTTAACAACACTATACATGTATTTGTTTTGTTTTGCACAACTAGAGTATTGAACAGTGTGTTGGGAAACCTACTAACTGCTTTCTCTGCCCTGTTTCTTAGGCCCATCCATATTTCGGG-CAAGTGAGGGCTGCTGAAACTAGCAGAATGAGGACA-CAGTAGCTTTCTTGTCTTGCTGTTAATGGGAAGAAAAAAAACTGTGTAATGTACCTTGTGTATCCATTTAAGTGACATTCGTGAGAACTATGTGGATTTGAACTTGAGCAGACATCTGAATTCAGGAATTACAGATCTTCATCATTGAACATTTCAAGAGAAATAGTGTTTTTTAGATTTCCTGATCGTGACCTTGATTGCAAATGGAAGTGACTTGCTGGGCGTCAAAAGTCACCCCACCCCCCCTTCCCCAAAGATACTATCTCCCTAGATGTGAACAAAAGCAGATTTTTGAAAATTAGTTCACTTTGTATATTAGTGCACTGGATTTTTCTGCATTCAGCTTTGGTGGTTTGTCTTTTGTGTAAGTTCATTGATATGGTGTAGGGCTATAGAAGAATGAA</genome_strand>
        <mrna_strand>AGCATCTAGTGTCACCGGAG.......................................................................................................................................GCTATAGATTATCTTGACAAGCTTCTCCGTTACCGATCATCAGACTAGACTTACGGCAAAAGAAGCAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCATCCATATTTCGGGCCAAGTGAGGGCTGCTGAAACTAGCAGAATGAGGACACCAGTAGCTTTCTTGTCTTGCTGTTAATGGGAAGAAAAAAAACTGTGTAATGTACCTTGTGTATCCATTTAAGTGACATTCGTGAGAACTATGTGGATTTGAACTTGAGCAGACATCTGAATTCAGGAATTACAGATCTTCATCATTGAACATTTCAAGAGAAATAGTGTTTTTTAGATTTCCTGATCGTGACCTTGATTGCAAATGGAAGTGACTTGCTGGGCGTCAAAAGTCACCCCACCCCCCCTTCCCCAAAGATACTATCTCCCTAGATGTGAACAAAAGCAGATTTTTGAAAATTAGTTCACTTTGTATATTAGTGCACTGGATTTTTCTGCATTCA.....................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E420270" ref_strand="+" ref_description="SGN-E420270 [STM-30-P24]">
      <seq>cagcatctagtgtcaccagaggctatagattatcttgacaagcttcttcgttatgatcatcagactagacttacggcaaaagaagcaatggcccatccatatttcgggcaagtgagggctgctgaaactagcaggatgaggacacagtagctttcttgtcttgctgttaatgggaagaaaaaaaactatggtgtaatgtaccttgtgtatccatttaagtgacattcgtgagaactatgtggatttgaacttgagcagacatctgaattcaggaattacagatcctcatcattgaacatttcaagagaaatagtgttctgtagatttcctgctcgggaccttgattgcaaatggaagtgacttgttgggcgtcnnannnaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="77893" stop="76325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77593" g_stop="77573" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77572" i_stop="77438" i_length="135">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77437" g_stop="77369" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="90" r_length="69" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77368" i_stop="76905" i_length="464">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.967" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76904" g_stop="76621" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="377" r_length="287" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="380" polyA_stop="400"/>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E420270" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E420270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77593" e_stop="77573"/>
          <exon e_start="77437" e_stop="77369"/>
          <exon e_start="76904" e_stop="76621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCATCTAGTGTCACCGGAGGTACTCTTCTCTCTCTATTTATGTATCTATGGTATTTCTGAATAAGACGAAACCAGCAATGGTGACAAGTACATCTCAACCAATTGGCTGTTCTTCACTACCCACTTGATAATTGATTTTGGCTTCTCATTGCAGGCTATAGATTATCTTGACAAGCTTCTCCGTTACGATCATCAGACTAGACTTACGGCAAAAGAAGCAATGGTAATCCTCTTTATCCACTATTAATGAGCTTTAAACTCTGAGCCTCATCATTTTCTTCTCAGCTTCTGTCTTATATTGGTTTACTATTGCTTATTAAAGAAAATGGTTTCGTGACATTTTAAAACACATACTTTACCAAAACCAAAATGTAAGGTTATAAATAAATGAGATCAGTGAGGATGAGTGGGTGAAGAGACGCAACTTGACTAGTTTTTTGTTTTGAAATTCTGTTAGAAACAAGCTGGTGATTGTGAAGTGTCAGTGCTTTCTGTTTCTGCTCTTGGCTATGTTTTTTTCCTTTGTCATGATGTTGCATCTGCATCTTTCCTGGAATCAATCCACTCTCCCTTCTCAATTATTTCTTTTAACAACACTATACATGTATTTGTTTTGTTTTGCACAACTAGAGTATTGAACAGTGTGTTGGGAAACCTACTAACTGCTTTCTCTGCCCTGTTTCTTAGGCCCATCCATATTTCGGGCAAGTGAGGGCTGCTGAAACTAGCAGAATGAGGACACAGTAGCTTTCTTGTCTTGCTGTTAATGGGAAGAAAAAAAAC--T-GTGTAATGTACCTTGTGTATCCATTTAAGTGACATTCGTGAGAACTATGTGGATTTGAACTTGAGCAGACATCTGAATTCAGGAATTACAGATCTTCATCATTGAACATTTCAAGAGAAATAGTGTTTTTTAGATTTCCTGATCGTGACCTTGATTGCAAATGGAAGTGACTTGCTGGGCGTCAAAA</genome_strand>
        <mrna_strand>CAGCATCTAGTGTCACCAGAG.......................................................................................................................................GCTATAGATTATCTTGACAAGCTTCTTCGTTATGATCATCAGACTAGACTTACGGCAAAAGAAGCAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCATCCATATTTCGGGCAAGTGAGGGCTGCTGAAACTAGCAGGATGAGGACACAGTAGCTTTCTTGTCTTGCTGTTAATGGGAAGAAAAAAAACTATGGTGTAATGTACCTTGTGTATCCATTTAAGTGACATTCGTGAGAACTATGTGGATTTGAACTTGAGCAGACATCTGAATTCAGGAATTACAGATCCTCATCATTGAACATTTCAAGAGAAATAGTGTTCTGTAGATTTCCTGCTCGGGACCTTGATTGCAAATGGAAGTGACTTGTTGGGCGTCNNAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E420271" ref_strand="-" ref_description="SGN-E420271 [STM-30-P24]">
      <seq>cagcatttagtgtcaccagaggctatagattatcttgacaagcttcttcgttatgatcatcagactagacttacggcaaaagaagcaatggcccatccatatttcgggcaagtgagggctgctgaaactagcaggatgaggacacagtagctttcttgtcttgctgttaatgggaagaaaaaaaactatggtgtaatgtaccttgtgtatccatttaagtgacattcgtgagaactatgtggatttgaacttgagcagacatctgaattcaggaattacagatcctcatcattgaacatttcaagagaaatagtgttctgtagatttcctgctcgggaccttgattgcaaatggaagtgacttgttgggagtcaaaaaaaaaaaaaaaaaaaaaaaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="77739" stop="76321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77593" g_stop="77573" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.905"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77572" i_stop="77438" i_length="135">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77437" g_stop="77369" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="90" r_length="69" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77368" i_stop="76905" i_length="464">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.967" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76904" g_stop="76621" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="377" r_length="287" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="378" polyA_stop="399"/>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E420271" ref_strand="-">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E420271" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="77593" e_stop="77573"/>
          <exon e_start="77437" e_stop="77369"/>
          <exon e_start="76904" e_stop="76621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCATCTAGTGTCACCGGAGGTACTCTTCTCTCTCTATTTATGTATCTATGGTATTTCTGAATAAGACGAAACCAGCAATGGTGACAAGTACATCTCAACCAATTGGCTGTTCTTCACTACCCACTTGATAATTGATTTTGGCTTCTCATTGCAGGCTATAGATTATCTTGACAAGCTTCTCCGTTACGATCATCAGACTAGACTTACGGCAAAAGAAGCAATGGTAATCCTCTTTATCCACTATTAATGAGCTTTAAACTCTGAGCCTCATCATTTTCTTCTCAGCTTCTGTCTTATATTGGTTTACTATTGCTTATTAAAGAAAATGGTTTCGTGACATTTTAAAACACATACTTTACCAAAACCAAAATGTAAGGTTATAAATAAATGAGATCAGTGAGGATGAGTGGGTGAAGAGACGCAACTTGACTAGTTTTTTGTTTTGAAATTCTGTTAGAAACAAGCTGGTGATTGTGAAGTGTCAGTGCTTTCTGTTTCTGCTCTTGGCTATGTTTTTTTCCTTTGTCATGATGTTGCATCTGCATCTTTCCTGGAATCAATCCACTCTCCCTTCTCAATTATTTCTTTTAACAACACTATACATGTATTTGTTTTGTTTTGCACAACTAGAGTATTGAACAGTGTGTTGGGAAACCTACTAACTGCTTTCTCTGCCCTGTTTCTTAGGCCCATCCATATTTCGGGCAAGTGAGGGCTGCTGAAACTAGCAGAATGAGGACACAGTAGCTTTCTTGTCTTGCTGTTAATGGGAAGAAAAAAAAC--T-GTGTAATGTACCTTGTGTATCCATTTAAGTGACATTCGTGAGAACTATGTGGATTTGAACTTGAGCAGACATCTGAATTCAGGAATTACAGATCTTCATCATTGAACATTTCAAGAGAAATAGTGTTTTTTAGATTTCCTGATCGTGACCTTGATTGCAAATGGAAGTGACTTGCTGGGCGTCAAAA</genome_strand>
        <mrna_strand>CAGCATTTAGTGTCACCAGAG.......................................................................................................................................GCTATAGATTATCTTGACAAGCTTCTTCGTTATGATCATCAGACTAGACTTACGGCAAAAGAAGCAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCATCCATATTTCGGGCAAGTGAGGGCTGCTGAAACTAGCAGGATGAGGACACAGTAGCTTTCTTGTCTTGCTGTTAATGGGAAGAAAAAAAACTATGGTGTAATGTACCTTGTGTATCCATTTAAGTGACATTCGTGAGAACTATGTGGATTTGAACTTGAGCAGACATCTGAATTCAGGAATTACAGATCCTCATCATTGAACATTTCAAGAGAAATAGTGTTCTGTAGATTTCCTGCTCGGGACCTTGATTGCAAATGGAAGTGACTTGTTGGGAGTCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E405996" ref_strand="+" ref_description="SGN-E405996 [PPI-2-G16]">
      <seq>cagcatctagtgtcaccagagtgctatagattatcttgacaagcttcttcgttatgatcatcagactagacttacggcaaaagaagcaatggcccatccatatttcgggcaagtgagggctgctgaaactagcaggatgaggacacagtagctttcttgtcttgctgttaatgggaagaaaaaaaactatggtgtaatgtaccttgtgtatccatttaagtgacattcgtgagaactatgtggatttgaacttgagcagacatctgaattcaggaattacagatcctcatcattgaacatttcaagagaaatagtgttctgtagatttcctgctcgggaccttgattgcaaatggaagtgacttgttgggcgtcaaaaaaaaaaaaaaaaaaaaaaaaana</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="77893" stop="76321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77593" g_stop="77573" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="0.857"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77572" i_stop="77438" i_length="135">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77437" g_stop="77369" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="91" r_length="69" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77368" i_stop="76905" i_length="464">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.967" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76904" g_stop="76621" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="378" r_length="287" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="379" polyA_stop="401"/>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E405996" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E405996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77593" e_stop="77573"/>
          <exon e_start="77437" e_stop="77369"/>
          <exon e_start="76904" e_stop="76621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCATCTAGTGTCACCGGAG-GTACTCTTCTCTCTCTATTTATGTATCTATGGTATTTCTGAATAAGACGAAACCAGCAATGGTGACAAGTACATCTCAACCAATTGGCTGTTCTTCACTACCCACTTGATAATTGATTTTGGCTTCTCATTGCAGGCTATAGATTATCTTGACAAGCTTCTCCGTTACGATCATCAGACTAGACTTACGGCAAAAGAAGCAATGGTAATCCTCTTTATCCACTATTAATGAGCTTTAAACTCTGAGCCTCATCATTTTCTTCTCAGCTTCTGTCTTATATTGGTTTACTATTGCTTATTAAAGAAAATGGTTTCGTGACATTTTAAAACACATACTTTACCAAAACCAAAATGTAAGGTTATAAATAAATGAGATCAGTGAGGATGAGTGGGTGAAGAGACGCAACTTGACTAGTTTTTTGTTTTGAAATTCTGTTAGAAACAAGCTGGTGATTGTGAAGTGTCAGTGCTTTCTGTTTCTGCTCTTGGCTATGTTTTTTTCCTTTGTCATGATGTTGCATCTGCATCTTTCCTGGAATCAATCCACTCTCCCTTCTCAATTATTTCTTTTAACAACACTATACATGTATTTGTTTTGTTTTGCACAACTAGAGTATTGAACAGTGTGTTGGGAAACCTACTAACTGCTTTCTCTGCCCTGTTTCTTAGGCCCATCCATATTTCGGGCAAGTGAGGGCTGCTGAAACTAGCAGAATGAGGACACAGTAGCTTTCTTGTCTTGCTGTTAATGGGAAGAAAAAAAAC--T-GTGTAATGTACCTTGTGTATCCATTTAAGTGACATTCGTGAGAACTATGTGGATTTGAACTTGAGCAGACATCTGAATTCAGGAATTACAGATCTTCATCATTGAACATTTCAAGAGAAATAGTGTTTTTTAGATTTCCTGATCGTGACCTTGATTGCAAATGGAAGTGACTTGCTGGGCGTCAAAA</genome_strand>
        <mrna_strand>CAGCATCTAGTGTCACCAGAGT.......................................................................................................................................GCTATAGATTATCTTGACAAGCTTCTTCGTTATGATCATCAGACTAGACTTACGGCAAAAGAAGCAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCATCCATATTTCGGGCAAGTGAGGGCTGCTGAAACTAGCAGGATGAGGACACAGTAGCTTTCTTGTCTTGCTGTTAATGGGAAGAAAAAAAACTATGGTGTAATGTACCTTGTGTATCCATTTAAGTGACATTCGTGAGAACTATGTGGATTTGAACTTGAGCAGACATCTGAATTCAGGAATTACAGATCCTCATCATTGAACATTTCAAGAGAAATAGTGTTCTGTAGATTTCCTGCTCGGGACCTTGATTGCAAATGGAAGTGACTTGTTGGGCGTCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E540224" ref_strand="+" ref_description="SGN-E540224 [TUS-60-G7](-)">
      <seq>tagattattgccattcacagggaataatgcacagggatgtcaaacctcataacgttatgatagaccatgaactgcggaagcttcgcttgatagattggggtcttgccgaattttaccacccagggaaggaatataatgttcgtgtggcttcaagatacttcaagggccctgaacttctagttgacttgcaagactatgactattctttggacatgtggagccttggctgcatgtttgcaggaatgattttccgcaaggaacctttcttttatggccatgataatcaggatcagctcgtcaaaattgcaaaggtacttgggacagatgagttgaatgcgtacttgcacaagtatcaactagagcttgatcctcagctagaggctatggttgggagacacagtaggaagccgtggtccaaatttattaatgcagacaatcagcatctagtgtcaccggaggctatagattatcttgacaagcttctccgttacgatcatcagactagacttacggcaaaagaagcaatggcccatccatatttcgggcaagtgagggctgctgaaactagcagaatgaggacacagtagctttcttgtcttgctgttaatgggaagaaaaaaaactgtgtaatgtaccttgtgtatccatttaagtgacattcgtgagaactatgtggatttgaacttgagcagacatctgaattcaggaattacagatcttcatcattgaacatttcaagagaaatagtgttttttaaaaaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="79740" stop="76374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79440" g_stop="79287" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79286" i_stop="78441" i_length="846">
            <donor d_prob="0.568" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78440" g_stop="78350" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="245" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78349" i_stop="78164" i_length="186">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78163" g_stop="78098" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="311" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78097" i_stop="77908" i_length="190">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77907" g_stop="77825" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="394" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77824" i_stop="77637" i_length="188">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77636" g_stop="77573" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="458" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="77572" i_stop="77438" i_length="135">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="77437" g_stop="77369" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="527" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="77368" i_stop="76905" i_length="464">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="76904" g_stop="76675" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="757" r_length="230" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="758" polyA_stop="775"/>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E540224" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79440" e_stop="79287"/>
          <exon e_start="78440" e_stop="78350"/>
          <exon e_start="78163" e_stop="78098"/>
          <exon e_start="77907" e_stop="77825"/>
          <exon e_start="77636" e_stop="77573"/>
          <exon e_start="77437" e_stop="77369"/>
          <exon e_start="76904" e_stop="76675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAGGTGAGATAATCTGCCGACAGTATGGCTGGACCGGCATAGTTGCTTTGCCAGCAACAACTTCCTACATATAGCATTGCTATTTGTAGATCCATGCTCTACTTGCAAATTATTCTCTGGACAAGTCATGAGTTTTTAATCAGAAAGCAAGTGACATTGTTATATATTTTTTAAGTCAGAAATAATAAAAGGAACATCATTCACTTACATATACAACAACTACCCGTCAGTTCCAAACTAGTCGGGGTCGTTATATGATTTTTGCTGTCCATGTTACTCCATTTAATCCCATATCTTGCGGACTTGTAAAGTTTAGAATCTCTATATTTTCTTAACTGACAAACTTCTGAAAAGCTAAAACACTCCTAGAAAGTATAGGACCTACAGGAAAATTCTAATATATTAATATATTCTCGACTAATATGTAGCATATATATAGAATTTTTTCTTCCATTGTGCCTTTCGTAAGTTCACATGGATCCTTAAAATTATAGGTCCTTAAAGACAACTTCCTTCCATGTGATTTTAGGTCTACTTCGTTTTTTAACAGCTCCACTCACCATAGTTTCACACTCAGGAGTCAGTGCATCAGGAGGGGTTAATGCAAGACATAATCAAATCATCTCAAGGAACAGCTGAGTTCTTAAAGAATACTTAAAACAATACCCATTAAAGAATACTTAAAACAATCAATGGGATTATAGGAAAAGGTTAGGAATTGTTTATGTAAAACTAATTCTGTATCAGCATAGCTGCATATGGGAAATTGGTTTTGTACCGTAAGTTAGTGGTTCATAAACTATCAATGCTATTGAAGCAAGTCTGAGTTCTTCTTTTCTTGCACTTCAGATACTTCAAGGGCCCTGAACTTCTAGTTGACTTGCAAGACTATGACTATTCTTTGGACATGTGGAGCCTTGGCTGCATGTTTGCAGGAATGGTGAGAAATTCTATGATTCATAATATAAGCTGTCAGTTGGTTTATAGTTTTATGCTATCAGTTGTGGGCCTGGGAAACTACAAACATCCGAAAGGACTTGTTAGAAGTTTGTATTTTGCTTATTTGAAATCAATTTTCCTTTTCCTCCTGTTTTCTTTGTGTCTGACCATACCTTTTCCTTGGTAGATTTTCCGCAAGGAACCTTTCTTTTATGGCCATGATAATCAGGATCAGCTCGTCAAAATTGCAAAGGTAATGCGTAGTAACTGACCAGTGACCAATGGGTTTATATACCTTAATTTTGTTGTTTGAGTGAGAGGGGGGAAGTTGATCATCTGAAAACAACCAAAGAAGTTGTTACTTCAGTTGCAAGTGAACACTCAATTTATAGAAGTAAAGCATAACTGCTTGACATGGAGTTGATAGATTATTGTTGTTATAGGTACTTGGGACAGATGAGTTGAATGCGTACTTGCACAAGTATCAACTAGAGCTTGATCCTCAGCTAGAGGCTATGGTTGGGAGGTATGCTTCTTGCTTTATCGCCAAGATAAAACTACGCTAAGGCAATTTGCAAAATAACTTAGAGCTGTGACTAAATAGGGTTACCAAGTTGATCTTAGCAACTAGCTTTAGCAGATGTGTGTCCTCTCTCATTAATTGCCAAAATTCTTAGCTATTGAAGGTGAATACAATCTGTCTTTCCCCTGCAGACACAGTAGGAAGCCGTGGTCCAAATTTATTAATGCAGACAATCAGCATCTAGTGTCACCGGAGGTACTCTTCTCTCTCTATTTATGTATCTATGGTATTTCTGAATAAGACGAAACCAGCAATGGTGACAAGTACATCTCAACCAATTGGCTGTTCTTCACTACCCACTTGATAATTGATTTTGGCTTCTCATTGCAGGCTATAGATTATCTTGACAAGCTTCTCCGTTACGATCATCAGACTAGACTTACGGCAAAAGAAGCAATGGTAATCCTCTTTATCCACTATTAATGAGCTTTAAACTCTGAGCCTCATCATTTTCTTCTCAGCTTCTGTCTTATATTGGTTTACTATTGCTTATTAAAGAAAATGGTTTCGTGACATTTTAAAACACATACTTTACCAAAACCAAAATGTAAGGTTATAAATAAATGAGATCAGTGAGGATGAGTGGGTGAAGAGACGCAACTTGACTAGTTTTTTGTTTTGAAATTCTGTTAGAAACAAGCTGGTGATTGTGAAGTGTCAGTGCTTTCTGTTTCTGCTCTTGGCTATGTTTTTTTCCTTTGTCATGATGTTGCATCTGCATCTTTCCTGGAATCAATCCACTCTCCCTTCTCAATTATTTCTTTTAACAACACTATACATGTATTTGTTTTGTTTTGCACAACTAGAGTATTGAACAGTGTGTTGGGAAACCTACTAACTGCTTTCTCTGCCCTGTTTCTTAGGCCCATCCATATTTCGGGCAAGTGAGGGCTGCTGAAACTAGCAGAATGAGGACACAGTAGCTTTCTTGTCTTGCTGTTAATGGGAAGAAAAAAAACTGTGTAATGTACCTTGTGTATCCATTTAAGTGACATTCGTGAGAACTATGTGGATTTGAACTTGAGCAGACATCTGAATTCAGGAATTACAGATCTTCATCATTGAACATTTCAAGAGAAATAGTGTTTTTTAG</genome_strand>
        <mrna_strand>TAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTCAAGGGCCCTGAACTTCTAGTTGACTTGCAAGACTATGACTATTCTTTGGACATGTGGAGCCTTGGCTGCATGTTTGCAGGAATG..........................................................................................................................................................................................ATTTTCCGCAAGGAACCTTTCTTTTATGGCCATGATAATCAGGATCAGCTCGTCAAAATTGCAAAG..............................................................................................................................................................................................GTACTTGGGACAGATGAGTTGAATGCGTACTTGCACAAGTATCAACTAGAGCTTGATCCTCAGCTAGAGGCTATGGTTGGGAG............................................................................................................................................................................................ACACAGTAGGAAGCCGTGGTCCAAATTTATTAATGCAGACAATCAGCATCTAGTGTCACCGGAG.......................................................................................................................................GCTATAGATTATCTTGACAAGCTTCTCCGTTACGATCATCAGACTAGACTTACGGCAAAAGAAGCAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCATCCATATTTCGGGCAAGTGAGGGCTGCTGAAACTAGCAGAATGAGGACACAGTAGCTTTCTTGTCTTGCTGTTAATGGGAAGAAAAAAAACTGTGTAATGTACCTTGTGTATCCATTTAAGTGACATTCGTGAGAACTATGTGGATTTGAACTTGAGCAGACATCTGAATTCAGGAATTACAGATCTTCATCATTGAACATTTCAAGAGAAATAGTGTTTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E546683" ref_strand="+" ref_description="SGN-E546683 [TUS-70-C20](-)">
      <seq>gcggaagcttcgcttgatagattggggtcttgctgaattttcccacccagggaaggaatataatgttcgtgtggcttcaagatacttcaagggccctgaacttctagttgacttgcaagactatgactattctttggacatgtggagccttggctgcatgtttgcaggaatgattttccgcaaggaacctttcttttatggccatgataatcaggatcagctcgtcaaaattgcaaaggtacttgggacagatgagttgaatgcgtacttgcacaagtatcaactagagcttgatcctcagctagaggctatggttgggagacacagtaggaagccatggtccaaatttattaatgcagacaatcagcatctagtgtcaccggaggctatagattatcttgacaagcttctccgatatgatcatcagactagacttacggcaaaagaagcaatggcccatccatatttcgggcaagtgagggctgctgaaactagcaggatgaggacacagtagctttcttgtcttgctgttaatgggaagaaaaaaaaaagtgtaatgtaccttgtgtatccatttaagtgacattcgtgagaactgtgtggatttgaacttgagcagacatctgaattcaggaattacagatcttcatcattgaacatttcaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="79667" stop="76385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79367" g_stop="79287" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79286" i_stop="78441" i_length="846">
            <donor d_prob="0.568" d_score="0.96"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78440" g_stop="78350" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="172" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78349" i_stop="78164" i_length="186">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78163" g_stop="78098" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="238" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78097" i_stop="77908" i_length="190">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77907" g_stop="77825" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="321" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77824" i_stop="77637" i_length="188">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77636" g_stop="77573" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="385" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="77572" i_stop="77438" i_length="135">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="77437" g_stop="77369" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="454" r_length="69" r_score="0.971"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="77368" i_stop="76905" i_length="464">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.967" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="76904" g_stop="76682" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="676" r_length="222" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E546683" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79367" e_stop="79287"/>
          <exon e_start="78440" e_stop="78350"/>
          <exon e_start="78163" e_stop="78098"/>
          <exon e_start="77907" e_stop="77825"/>
          <exon e_start="77636" e_stop="77573"/>
          <exon e_start="77437" e_stop="77369"/>
          <exon e_start="76904" e_stop="76682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAGGTGAGATAATCTGCCGACAGTATGGCTGGACCGGCATAGTTGCTTTGCCAGCAACAACTTCCTACATATAGCATTGCTATTTGTAGATCCATGCTCTACTTGCAAATTATTCTCTGGACAAGTCATGAGTTTTTAATCAGAAAGCAAGTGACATTGTTATATATTTTTTAAGTCAGAAATAATAAAAGGAACATCATTCACTTACATATACAACAACTACCCGTCAGTTCCAAACTAGTCGGGGTCGTTATATGATTTTTGCTGTCCATGTTACTCCATTTAATCCCATATCTTGCGGACTTGTAAAGTTTAGAATCTCTATATTTTCTTAACTGACAAACTTCTGAAAAGCTAAAACACTCCTAGAAAGTATAGGACCTACAGGAAAATTCTAATATATTAATATATTCTCGACTAATATGTAGCATATATATAGAATTTTTTCTTCCATTGTGCCTTTCGTAAGTTCACATGGATCCTTAAAATTATAGGTCCTTAAAGACAACTTCCTTCCATGTGATTTTAGGTCTACTTCGTTTTTTAACAGCTCCACTCACCATAGTTTCACACTCAGGAGTCAGTGCATCAGGAGGGGTTAATGCAAGACATAATCAAATCATCTCAAGGAACAGCTGAGTTCTTAAAGAATACTTAAAACAATACCCATTAAAGAATACTTAAAACAATCAATGGGATTATAGGAAAAGGTTAGGAATTGTTTATGTAAAACTAATTCTGTATCAGCATAGCTGCATATGGGAAATTGGTTTTGTACCGTAAGTTAGTGGTTCATAAACTATCAATGCTATTGAAGCAAGTCTGAGTTCTTCTTTTCTTGCACTTCAGATACTTCAAGGGCCCTGAACTTCTAGTTGACTTGCAAGACTATGACTATTCTTTGGACATGTGGAGCCTTGGCTGCATGTTTGCAGGAATGGTGAGAAATTCTATGATTCATAATATAAGCTGTCAGTTGGTTTATAGTTTTATGCTATCAGTTGTGGGCCTGGGAAACTACAAACATCCGAAAGGACTTGTTAGAAGTTTGTATTTTGCTTATTTGAAATCAATTTTCCTTTTCCTCCTGTTTTCTTTGTGTCTGACCATACCTTTTCCTTGGTAGATTTTCCGCAAGGAACCTTTCTTTTATGGCCATGATAATCAGGATCAGCTCGTCAAAATTGCAAAGGTAATGCGTAGTAACTGACCAGTGACCAATGGGTTTATATACCTTAATTTTGTTGTTTGAGTGAGAGGGGGGAAGTTGATCATCTGAAAACAACCAAAGAAGTTGTTACTTCAGTTGCAAGTGAACACTCAATTTATAGAAGTAAAGCATAACTGCTTGACATGGAGTTGATAGATTATTGTTGTTATAGGTACTTGGGACAGATGAGTTGAATGCGTACTTGCACAAGTATCAACTAGAGCTTGATCCTCAGCTAGAGGCTATGGTTGGGAGGTATGCTTCTTGCTTTATCGCCAAGATAAAACTACGCTAAGGCAATTTGCAAAATAACTTAGAGCTGTGACTAAATAGGGTTACCAAGTTGATCTTAGCAACTAGCTTTAGCAGATGTGTGTCCTCTCTCATTAATTGCCAAAATTCTTAGCTATTGAAGGTGAATACAATCTGTCTTTCCCCTGCAGACACAGTAGGAAGCCGTGGTCCAAATTTATTAATGCAGACAATCAGCATCTAGTGTCACCGGAGGTACTCTTCTCTCTCTATTTATGTATCTATGGTATTTCTGAATAAGACGAAACCAGCAATGGTGACAAGTACATCTCAACCAATTGGCTGTTCTTCACTACCCACTTGATAATTGATTTTGGCTTCTCATTGCAGGCTATAGATTATCTTGACAAGCTTCTCCGTTACGATCATCAGACTAGACTTACGGCAAAAGAAGCAATGGTAATCCTCTTTATCCACTATTAATGAGCTTTAAACTCTGAGCCTCATCATTTTCTTCTCAGCTTCTGTCTTATATTGGTTTACTATTGCTTATTAAAGAAAATGGTTTCGTGACATTTTAAAACACATACTTTACCAAAACCAAAATGTAAGGTTATAAATAAATGAGATCAGTGAGGATGAGTGGGTGAAGAGACGCAACTTGACTAGTTTTTTGTTTTGAAATTCTGTTAGAAACAAGCTGGTGATTGTGAAGTGTCAGTGCTTTCTGTTTCTGCTCTTGGCTATGTTTTTTTCCTTTGTCATGATGTTGCATCTGCATCTTTCCTGGAATCAATCCACTCTCCCTTCTCAATTATTTCTTTTAACAACACTATACATGTATTTGTTTTGTTTTGCACAACTAGAGTATTGAACAGTGTGTTGGGAAACCTACTAACTGCTTTCTCTGCCCTGTTTCTTAGGCCCATCCATATTTCGGGCAAGTGAGGGCTGCTGAAACTAGCAGAATGAGGACACAGTAGCTTTCTTGTCTTGCTGTTAATGGGAAGAAAAAAAACTGTGTAATGTACCTTGTGTATCCATTTAAGTGACATTCGTGAGAACTATGTGGATTTGAACTTGAGCAGACATCTGAATTCAGGAATTACAGATCTTCATCATTGAACATTTCAAGAGAAATAGTGT</genome_strand>
        <mrna_strand>GCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCTGAATTTTCCCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTCAAGGGCCCTGAACTTCTAGTTGACTTGCAAGACTATGACTATTCTTTGGACATGTGGAGCCTTGGCTGCATGTTTGCAGGAATG..........................................................................................................................................................................................ATTTTCCGCAAGGAACCTTTCTTTTATGGCCATGATAATCAGGATCAGCTCGTCAAAATTGCAAAG..............................................................................................................................................................................................GTACTTGGGACAGATGAGTTGAATGCGTACTTGCACAAGTATCAACTAGAGCTTGATCCTCAGCTAGAGGCTATGGTTGGGAG............................................................................................................................................................................................ACACAGTAGGAAGCCATGGTCCAAATTTATTAATGCAGACAATCAGCATCTAGTGTCACCGGAG.......................................................................................................................................GCTATAGATTATCTTGACAAGCTTCTCCGATATGATCATCAGACTAGACTTACGGCAAAAGAAGCAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCATCCATATTTCGGGCAAGTGAGGGCTGCTGAAACTAGCAGGATGAGGACACAGTAGCTTTCTTGTCTTGCTGTTAATGGGAAGAAAAAAAAAAGTGTAATGTACCTTGTGTATCCATTTAAGTGACATTCGTGAGAACTGTGTGGATTTGAACTTGAGCAGACATCTGAATTCAGGAATTACAGATCTTCATCATTGAACATTTCAA-AAAAAAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E215766" ref_strand="+" ref_description="SGN-E215766 [cLEL-15-C16](-)">
      <seq>acttgcacaagtatcaactagagcttgatcctcagctagaggctatggttgggagacacagtaggaagccgtggtccaaatttattaatgcagacaatcagcatctagtgtcaccggaggctatagattatcttgacaagcttctccgttacgatcatcagactagacttacggcaaaagaagcaatggcccatccatatttcgggcaagtgagggctgctgaaactagcagaatgaggacacagtagctttcttgtcttgctgttaatgggaagaaaaaaaactgtgtaatgtaccttgtgtatccatttaagtgacattcgtgagaactatgtggatttgaacttgagcagacatctgaattcaggaattacagatcttcatcattgagcatttcaagagaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="78179" stop="76386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77879" g_stop="77825" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77824" i_stop="77637" i_length="188">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77636" g_stop="77573" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="119" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77572" i_stop="77438" i_length="135">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77437" g_stop="77369" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="188" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77368" i_stop="76905" i_length="464">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76904" g_stop="76686" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="407" r_length="219" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="408" polyA_stop="430"/>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E215766" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77879" e_stop="77825"/>
          <exon e_start="77636" e_stop="77573"/>
          <exon e_start="77437" e_stop="77369"/>
          <exon e_start="76904" e_stop="76686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTGCACAAGTATCAACTAGAGCTTGATCCTCAGCTAGAGGCTATGGTTGGGAGGTATGCTTCTTGCTTTATCGCCAAGATAAAACTACGCTAAGGCAATTTGCAAAATAACTTAGAGCTGTGACTAAATAGGGTTACCAAGTTGATCTTAGCAACTAGCTTTAGCAGATGTGTGTCCTCTCTCATTAATTGCCAAAATTCTTAGCTATTGAAGGTGAATACAATCTGTCTTTCCCCTGCAGACACAGTAGGAAGCCGTGGTCCAAATTTATTAATGCAGACAATCAGCATCTAGTGTCACCGGAGGTACTCTTCTCTCTCTATTTATGTATCTATGGTATTTCTGAATAAGACGAAACCAGCAATGGTGACAAGTACATCTCAACCAATTGGCTGTTCTTCACTACCCACTTGATAATTGATTTTGGCTTCTCATTGCAGGCTATAGATTATCTTGACAAGCTTCTCCGTTACGATCATCAGACTAGACTTACGGCAAAAGAAGCAATGGTAATCCTCTTTATCCACTATTAATGAGCTTTAAACTCTGAGCCTCATCATTTTCTTCTCAGCTTCTGTCTTATATTGGTTTACTATTGCTTATTAAAGAAAATGGTTTCGTGACATTTTAAAACACATACTTTACCAAAACCAAAATGTAAGGTTATAAATAAATGAGATCAGTGAGGATGAGTGGGTGAAGAGACGCAACTTGACTAGTTTTTTGTTTTGAAATTCTGTTAGAAACAAGCTGGTGATTGTGAAGTGTCAGTGCTTTCTGTTTCTGCTCTTGGCTATGTTTTTTTCCTTTGTCATGATGTTGCATCTGCATCTTTCCTGGAATCAATCCACTCTCCCTTCTCAATTATTTCTTTTAACAACACTATACATGTATTTGTTTTGTTTTGCACAACTAGAGTATTGAACAGTGTGTTGGGAAACCTACTAACTGCTTTCTCTGCCCTGTTTCTTAGGCCCATCCATATTTCGGGCAAGTGAGGGCTGCTGAAACTAGCAGAATGAGGACACAGTAGCTTTCTTGTCTTGCTGTTAATGGGAAGAAAAAAAACTGTGTAATGTACCTTGTGTATCCATTTAAGTGACATTCGTGAGAACTATGTGGATTTGAACTTGAGCAGACATCTGAATTCAGGAATTACAGATCTTCATCATTGAACATTTCAAGAGAAATA</genome_strand>
        <mrna_strand>ACTTGCACAAGTATCAACTAGAGCTTGATCCTCAGCTAGAGGCTATGGTTGGGAG............................................................................................................................................................................................ACACAGTAGGAAGCCGTGGTCCAAATTTATTAATGCAGACAATCAGCATCTAGTGTCACCGGAG.......................................................................................................................................GCTATAGATTATCTTGACAAGCTTCTCCGTTACGATCATCAGACTAGACTTACGGCAAAAGAAGCAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCATCCATATTTCGGGCAAGTGAGGGCTGCTGAAACTAGCAGAATGAGGACACAGTAGCTTTCTTGTCTTGCTGTTAATGGGAAGAAAAAAAACTGTGTAATGTACCTTGTGTATCCATTTAAGTGACATTCGTGAGAACTATGTGGATTTGAACTTGAGCAGACATCTGAATTCAGGAATTACAGATCTTCATCATTGAGCATTTCAAGAGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E255943" ref_strand="-" ref_description="SGN-E255943 [cLEG-35-I15]">
      <seq>gcatgtttgcaggaatgattttccgcaaggaacctttcttttatggccatgataatcaggatcagctcgtcaaaattgcaaaggtacttgggacagatgagttgaatgcgtacttgcacaagtatcaactagagcttgatcctcagctagaggctatggttgggagacacagtaggaagccgtggtccaaatttattaatgcagacaatcagcatctagtgtcaccggaggctatagattatcttgacaagcttctccgttacgatcatcagactagacttacggcaaaagaagcaatggcccatccatatttcgggcaagtgagggctgctgaaactagcagaatgaggacacagtagctttcttgtcttgctgttaatgggaagaaaaaaaactgtgtaatgtaccttgtgtatccatttaagtgacattcgtgagaactatgtggatttgaacttgagcagacatctgaattcaggaattacagatcttcatcattgaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="78468" stop="76400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78366" g_stop="78350" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78349" i_stop="78164" i_length="186">
            <donor d_prob="0.930" d_score="0.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78163" g_stop="78098" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="83" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78097" i_stop="77908" i_length="190">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77907" g_stop="77825" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="166" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77824" i_stop="77637" i_length="188">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77636" g_stop="77573" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="230" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77572" i_stop="77438" i_length="135">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77437" g_stop="77369" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="299" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="77368" i_stop="76905" i_length="464">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="76904" g_stop="76697" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="507" r_length="208" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E255943" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255943" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="78366" e_stop="78350"/>
          <exon e_start="78163" e_stop="78098"/>
          <exon e_start="77907" e_stop="77825"/>
          <exon e_start="77636" e_stop="77573"/>
          <exon e_start="77437" e_stop="77369"/>
          <exon e_start="76904" e_stop="76697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATGTTTGCAGGAATGGTGAGAAATTCTATGATTCATAATATAAGCTGTCAGTTGGTTTATAGTTTTATGCTATCAGTTGTGGGCCTGGGAAACTACAAACATCCGAAAGGACTTGTTAGAAGTTTGTATTTTGCTTATTTGAAATCAATTTTCCTTTTCCTCCTGTTTTCTTTGTGTCTGACCATACCTTTTCCTTGGTAGATTTTCCGCAAGGAACCTTTCTTTTATGGCCATGATAATCAGGATCAGCTCGTCAAAATTGCAAAGGTAATGCGTAGTAACTGACCAGTGACCAATGGGTTTATATACCTTAATTTTGTTGTTTGAGTGAGAGGGGGGAAGTTGATCATCTGAAAACAACCAAAGAAGTTGTTACTTCAGTTGCAAGTGAACACTCAATTTATAGAAGTAAAGCATAACTGCTTGACATGGAGTTGATAGATTATTGTTGTTATAGGTACTTGGGACAGATGAGTTGAATGCGTACTTGCACAAGTATCAACTAGAGCTTGATCCTCAGCTAGAGGCTATGGTTGGGAGGTATGCTTCTTGCTTTATCGCCAAGATAAAACTACGCTAAGGCAATTTGCAAAATAACTTAGAGCTGTGACTAAATAGGGTTACCAAGTTGATCTTAGCAACTAGCTTTAGCAGATGTGTGTCCTCTCTCATTAATTGCCAAAATTCTTAGCTATTGAAGGTGAATACAATCTGTCTTTCCCCTGCAGACACAGTAGGAAGCCGTGGTCCAAATTTATTAATGCAGACAATCAGCATCTAGTGTCACCGGAGGTACTCTTCTCTCTCTATTTATGTATCTATGGTATTTCTGAATAAGACGAAACCAGCAATGGTGACAAGTACATCTCAACCAATTGGCTGTTCTTCACTACCCACTTGATAATTGATTTTGGCTTCTCATTGCAGGCTATAGATTATCTTGACAAGCTTCTCCGTTACGATCATCAGACTAGACTTACGGCAAAAGAAGCAATGGTAATCCTCTTTATCCACTATTAATGAGCTTTAAACTCTGAGCCTCATCATTTTCTTCTCAGCTTCTGTCTTATATTGGTTTACTATTGCTTATTAAAGAAAATGGTTTCGTGACATTTTAAAACACATACTTTACCAAAACCAAAATGTAAGGTTATAAATAAATGAGATCAGTGAGGATGAGTGGGTGAAGAGACGCAACTTGACTAGTTTTTTGTTTTGAAATTCTGTTAGAAACAAGCTGGTGATTGTGAAGTGTCAGTGCTTTCTGTTTCTGCTCTTGGCTATGTTTTTTTCCTTTGTCATGATGTTGCATCTGCATCTTTCCTGGAATCAATCCACTCTCCCTTCTCAATTATTTCTTTTAACAACACTATACATGTATTTGTTTTGTTTTGCACAACTAGAGTATTGAACAGTGTGTTGGGAAACCTACTAACTGCTTTCTCTGCCCTGTTTCTTAGGCCCATCCATATTTCGGGCAAGTGAGGGCTGCTGAAACTAGCAGAATGAGGACACAGTAGCTTTCTTGTCTTGCTGTTAATGGGAAGAAAAAAAACTGTGTAATGTACCTTGTGTATCCATTTAAGTGACATTCGTGAGAACTATGTGGATTTGAACTTGAGCAGACATCTGAATTCAGGAATTACAGATCTTCATCATTGAACATTT</genome_strand>
        <mrna_strand>GCATGTTTGCAGGAATG..........................................................................................................................................................................................ATTTTCCGCAAGGAACCTTTCTTTTATGGCCATGATAATCAGGATCAGCTCGTCAAAATTGCAAAG..............................................................................................................................................................................................GTACTTGGGACAGATGAGTTGAATGCGTACTTGCACAAGTATCAACTAGAGCTTGATCCTCAGCTAGAGGCTATGGTTGGGAG............................................................................................................................................................................................ACACAGTAGGAAGCCGTGGTCCAAATTTATTAATGCAGACAATCAGCATCTAGTGTCACCGGAG.......................................................................................................................................GCTATAGATTATCTTGACAAGCTTCTCCGTTACGATCATCAGACTAGACTTACGGCAAAAGAAGCAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCATCCATATTTCGGGCAAGTGAGGGCTGCTGAAACTAGCAGAATGAGGACACAGTAGCTTTCTTGTCTTGCTGTTAATGGGAAGAAAAAAAACTGTGTAATGTACCTTGTGTATCCATTTAAGTGACATTCGTGAGAACTATGTGGATTTGAACTTGAGCAGACATCTGAATTCAGGAATTACAGATCTTCATCATTGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E619679" ref_strand="-" ref_description="SGN-E619679 [70372]">
      <seq>ttttgtacccaacgctaacagattacgacatacggtactacatatatgagcttctcaaggcactagattattgccattcacagggaataatgcatagggatgtcaagcctcataacgttatgatagatcatgaactgcggaagcttcgcttgatagattggggtcttgctgaattttaccacccagggaaggaatataatgttcgtgtggcttcaagatatttcaagggccctgaacttctagttgacttgcaagactacgactattctttggacatgtggagccttggctgcatgtttgcaggaatgattttccgcaaggaacctttcttttatggccatgataatcaagatcagctcgtcaaaattgcaaaggtacttgggacagatgggttgaatgcatatttgcacaagtatcaactagagcttgatcctcagctagaggctatggttgggagacacagtaggaagccgtggtccaaatttattaatgcataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="81283" stop="77298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80983" g_stop="80925" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80924" i_stop="79445" i_length="1480">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79444" g_stop="79287" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="217" r_length="158" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79286" i_stop="78441" i_length="846">
            <donor d_prob="0.568" d_score="0.98"/>
            <acceptor a_prob="0.911" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78440" g_stop="78350" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="308" r_length="91" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78349" i_stop="78164" i_length="186">
            <donor d_prob="0.930" d_score="0.98"/>
            <acceptor a_prob="0.941" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78163" g_stop="78098" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="374" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78097" i_stop="77908" i_length="190">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77907" g_stop="77825" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="457" r_length="83" r_score="0.964"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="77824" i_stop="77637" i_length="188">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="77636" g_stop="77597" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="497" r_length="40" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E619679" ref_strand="-">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E619679" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="80983" e_stop="80925"/>
          <exon e_start="79444" e_stop="79287"/>
          <exon e_start="78440" e_stop="78350"/>
          <exon e_start="78163" e_stop="78098"/>
          <exon e_start="77907" e_stop="77825"/>
          <exon e_start="77636" e_stop="77597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAGGTAAGATGATAAACACATCAGATGGCAGTCAATATGGCTTTTATGTATTCATGCTCCCTCTCCCCTGATTCTTTTTTTTTTTTTTAAGGAAGGTAACAGTTATATACTTCCTGTCCTCTTGGTCCTCCTTTTCTGTATCTTCTTTCTTCTCTCAGAACCAAGAATAGAGTTGTACTGATGTCTTAACTTACTATCTGGTCAAAACTTTGTTTGTCTCCAACATTTCCTTCTATTGCAGCTTTTCAAGGTTTGTATGAGTATGAGAATTTTGGGAGTCCCCAGTTTTCTTATGCTCAGCAACTATTTCTGAATTGAGTGGATATATTCTCATATACTATGATCAAATTATGAGATCAAACTATCAAAGTTATAACTCCTAGGCTCATCTCAAGTGGAAATTTTGGAATCCAAGATTCTGGTGCCATAAAACTGCACTAATTTGGATTCATCTTATATCTATATTTAGATAATTGGGAGTCTGTCGAATGTGTCTCGTGATCTTGGGTTAGTGGGAATGACTAAGACTGTAAACTCATATTTGTTCACCTTATCCTGCCTGCCAATACATGGATTTCAAATCCATCATCAAAAATGTAGATTTTTCTTATTGATATTGTCAGCTCATTCACTGTCTTGGTCATTCCAATTGATTACCTTTCCTCTGCAATTCGGTCTAAGTATAGCTTCTGAATGTGTTTTTTACAAGGTAAATGACCTCATAGTGAGGTGCTTACCATGTCTCTTGTTATCAGATGATATGAATTAGATTCACTGCATGCCTATTGGAAGTTGATTTTATATCTAGATTAATGGCTATGCTCGTTGTTACTCTTAACAATGTGACATTTTTTTTCTGACTTTGGATTTCTTAAGTAACTCTCTTGTATTCTTCTGATCTTATAATTGGTTAAGGAAAAAAAATTCACCAATGCCATGGATATTCTCTCCTCTGTTTGCTAATTGCTATTTAAATTTCATTTTCCTTTTTCACGAGTAATATTATATTCCCTTTTTGTCTGATTTGCGTGAGAGTAACTATTTGGAAATGGGGATGCTAATTATTGGATCCTGTTGATTTCTATCTCGAAGTTAGTTCTTCCTTTTTGCTACATGCCTACATCACCAGCCTACCTGATCATATGTCTAGGTTTCCTTTCTTTTGCCTCCTCCTGCGAAAAAAAGAAAAGAAATTTAACTTCTCAAGCTTTCTCATTGTGTATCAGCATAATTGTTTGTCAAATGCTAGATCTGTTCCTGCATACTTACTTTCCATTCGCTTAATTTACTCTATTAATTTCCCCTTCTTTTTTGAAAGAAAAGAAAGAATCACGTTTTTGGCATGACTGCTGAATTTGCTGAGGCCTTCATTTCTTGTGACAGTTGTTTAATAGACTCTTTGGGACCTATTCTTTGTGTACATTTCTTGACATGCTTACCAATTTATGGAGGTCGAAAACTGAAACTTCTTATCAACCTGCAGGCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAGGTGAGATAATCTGCCGACAGTATGGCTGGACCGGCATAGTTGCTTTGCCAGCAACAACTTCCTACATATAGCATTGCTATTTGTAGATCCATGCTCTACTTGCAAATTATTCTCTGGACAAGTCATGAGTTTTTAATCAGAAAGCAAGTGACATTGTTATATATTTTTTAAGTCAGAAATAATAAAAGGAACATCATTCACTTACATATACAACAACTACCCGTCAGTTCCAAACTAGTCGGGGTCGTTATATGATTTTTGCTGTCCATGTTACTCCATTTAATCCCATATCTTGCGGACTTGTAAAGTTTAGAATCTCTATATTTTCTTAACTGACAAACTTCTGAAAAGCTAAAACACTCCTAGAAAGTATAGGACCTACAGGAAAATTCTAATATATTAATATATTCTCGACTAATATGTAGCATATATATAGAATTTTTTCTTCCATTGTGCCTTTCGTAAGTTCACATGGATCCTTAAAATTATAGGTCCTTAAAGACAACTTCCTTCCATGTGATTTTAGGTCTACTTCGTTTTTTAACAGCTCCACTCACCATAGTTTCACACTCAGGAGTCAGTGCATCAGGAGGGGTTAATGCAAGACATAATCAAATCATCTCAAGGAACAGCTGAGTTCTTAAAGAATACTTAAAACAATACCCATTAAAGAATACTTAAAACAATCAATGGGATTATAGGAAAAGGTTAGGAATTGTTTATGTAAAACTAATTCTGTATCAGCATAGCTGCATATGGGAAATTGGTTTTGTACCGTAAGTTAGTGGTTCATAAACTATCAATGCTATTGAAGCAAGTCTGAGTTCTTCTTTTCTTGCACTTCAGATACTTCAAGGGCCCTGAACTTCTAGTTGACTTGCAAGACTATGACTATTCTTTGGACATGTGGAGCCTTGGCTGCATGTTTGCAGGAATGGTGAGAAATTCTATGATTCATAATATAAGCTGTCAGTTGGTTTATAGTTTTATGCTATCAGTTGTGGGCCTGGGAAACTACAAACATCCGAAAGGACTTGTTAGAAGTTTGTATTTTGCTTATTTGAAATCAATTTTCCTTTTCCTCCTGTTTTCTTTGTGTCTGACCATACCTTTTCCTTGGTAGATTTTCCGCAAGGAACCTTTCTTTTATGGCCATGATAATCAGGATCAGCTCGTCAAAATTGCAAAGGTAATGCGTAGTAACTGACCAGTGACCAATGGGTTTATATACCTTAATTTTGTTGTTTGAGTGAGAGGGGGGAAGTTGATCATCTGAAAACAACCAAAGAAGTTGTTACTTCAGTTGCAAGTGAACACTCAATTTATAGAAGTAAAGCATAACTGCTTGACATGGAGTTGATAGATTATTGTTGTTATAGGTACTTGGGACAGATGAGTTGAATGCGTACTTGCACAAGTATCAACTAGAGCTTGATCCTCAGCTAGAGGCTATGGTTGGGAGGTATGCTTCTTGCTTTATCGCCAAGATAAAACTACGCTAAGGCAATTTGCAAAATAACTTAGAGCTGTGACTAAATAGGGTTACCAAGTTGATCTTAGCAACTAGCTTTAGCAGATGTGTGTCCTCTCTCATTAATTGCCAAAATTCTTAGCTATTGAAGGTGAATACAATCTGTCTTTCCCCTGCAGACACAGTAGGAAGCCGTGGTCCAAATTTATTAATGCAGAC</genome_strand>
        <mrna_strand>TTTTGTACCCAACGCTAACAGATTACGACATACGGTACTACATATATGAGCTTCTCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTAGATTATTGCCATTCACAGGGAATAATGCATAGGGATGTCAAGCCTCATAACGTTATGATAGATCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCTGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTTCAAGGGCCCTGAACTTCTAGTTGACTTGCAAGACTACGACTATTCTTTGGACATGTGGAGCCTTGGCTGCATGTTTGCAGGAATG..........................................................................................................................................................................................ATTTTCCGCAAGGAACCTTTCTTTTATGGCCATGATAATCAAGATCAGCTCGTCAAAATTGCAAAG..............................................................................................................................................................................................GTACTTGGGACAGATGGGTTGAATGCATATTTGCACAAGTATCAACTAGAGCTTGATCCTCAGCTAGAGGCTATGGTTGGGAG............................................................................................................................................................................................ACACAGTAGGAAGCCGTGGTCCAAATTTATTAATGCATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E572566" ref_strand="+" ref_description="SGN-E572566 [31740]">
      <seq>atcaggatgactatgaggttgttcggaaagttggaagaggaaaatatagtgaagtttttgaaggtataaatgttcacagcaacgagaagtgcataatcaagatcctgaaacctgttaagaagaaaaagatcaagagagagatcaaaatcttgcagaacctctgtggcggaccaaatgttgtcaaactccttgatattgtcagagaccagcactcaaaaacaccaagcttaatttttgagtatgtgaacagtacagatttcaaagtactgtacccaacattaacggattatgacatacgctactacatatatgagcttctcaaggcactagactattgtcattctcagggaataatgcacagagatgtcaagccacataatgttatgatagaccatgagttgcggaagcttcgcttgatagactggggtcttgctgaattttaccatccaggaaaggaatataatgtccgtgtggcttcaagatacttcaagggccctgaacttctagttgacttgcaagattatgactattctttggacatgtggagccttggatgcatgtttgcaggaatgatcttccgcaaggaacctttcttctatggccatgataaccaggatcagcttgtcaaaattgctaaggtacttggaactgatgagttgaatgcatatttgcacaagtatcaactggagcttgatcctcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="82106" stop="77545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81806" g_stop="81679" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81678" i_stop="81120" i_length="559">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.273" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81119" g_stop="80925" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="323" r_length="195" r_score="0.882"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80924" i_stop="79445" i_length="1480">
            <donor d_prob="0.989" d_score="0.90"/>
            <acceptor a_prob="0.992" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79444" g_stop="79287" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="481" r_length="158" r_score="0.911"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79286" i_stop="78441" i_length="846">
            <donor d_prob="0.568" d_score="0.92"/>
            <acceptor a_prob="0.911" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78440" g_stop="78350" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="572" r_length="91" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78349" i_stop="78164" i_length="186">
            <donor d_prob="0.930" d_score="0.98"/>
            <acceptor a_prob="0.941" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78163" g_stop="78098" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="638" r_length="66" r_score="0.924"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78097" i_stop="77908" i_length="190">
            <donor d_prob="0.987" d_score="0.92"/>
            <acceptor a_prob="0.992" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="77907" g_stop="77845" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="701" r_length="63" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E572566" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E572566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81806" e_stop="81679"/>
          <exon e_start="81119" e_stop="80925"/>
          <exon e_start="79444" e_stop="79287"/>
          <exon e_start="78440" e_stop="78350"/>
          <exon e_start="78163" e_stop="78098"/>
          <exon e_start="77907" e_stop="77845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAGGTAAGATGATAAACACATCAGATGGCAGTCAATATGGCTTTTATGTATTCATGCTCCCTCTCCCCTGATTCTTTTTTTTTTTTTTAAGGAAGGTAACAGTTATATACTTCCTGTCCTCTTGGTCCTCCTTTTCTGTATCTTCTTTCTTCTCTCAGAACCAAGAATAGAGTTGTACTGATGTCTTAACTTACTATCTGGTCAAAACTTTGTTTGTCTCCAACATTTCCTTCTATTGCAGCTTTTCAAGGTTTGTATGAGTATGAGAATTTTGGGAGTCCCCAGTTTTCTTATGCTCAGCAACTATTTCTGAATTGAGTGGATATATTCTCATATACTATGATCAAATTATGAGATCAAACTATCAAAGTTATAACTCCTAGGCTCATCTCAAGTGGAAATTTTGGAATCCAAGATTCTGGTGCCATAAAACTGCACTAATTTGGATTCATCTTATATCTATATTTAGATAATTGGGAGTCTGTCGAATGTGTCTCGTGATCTTGGGTTAGTGGGAATGACTAAGACTGTAAACTCATATTTGTTCACCTTATCCTGCCTGCCAATACATGGATTTCAAATCCATCATCAAAAATGTAGATTTTTCTTATTGATATTGTCAGCTCATTCACTGTCTTGGTCATTCCAATTGATTACCTTTCCTCTGCAATTCGGTCTAAGTATAGCTTCTGAATGTGTTTTTTACAAGGTAAATGACCTCATAGTGAGGTGCTTACCATGTCTCTTGTTATCAGATGATATGAATTAGATTCACTGCATGCCTATTGGAAGTTGATTTTATATCTAGATTAATGGCTATGCTCGTTGTTACTCTTAACAATGTGACATTTTTTTTCTGACTTTGGATTTCTTAAGTAACTCTCTTGTATTCTTCTGATCTTATAATTGGTTAAGGAAAAAAAATTCACCAATGCCATGGATATTCTCTCCTCTGTTTGCTAATTGCTATTTAAATTTCATTTTCCTTTTTCACGAGTAATATTATATTCCCTTTTTGTCTGATTTGCGTGAGAGTAACTATTTGGAAATGGGGATGCTAATTATTGGATCCTGTTGATTTCTATCTCGAAGTTAGTTCTTCCTTTTTGCTACATGCCTACATCACCAGCCTACCTGATCATATGTCTAGGTTTCCTTTCTTTTGCCTCCTCCTGCGAAAAAAAGAAAAGAAATTTAACTTCTCAAGCTTTCTCATTGTGTATCAGCATAATTGTTTGTCAAATGCTAGATCTGTTCCTGCATACTTACTTTCCATTCGCTTAATTTACTCTATTAATTTCCCCTTCTTTTTTGAAAGAAAAGAAAGAATCACGTTTTTGGCATGACTGCTGAATTTGCTGAGGCCTTCATTTCTTGTGACAGTTGTTTAATAGACTCTTTGGGACCTATTCTTTGTGTACATTTCTTGACATGCTTACCAATTTATGGAGGTCGAAAACTGAAACTTCTTATCAACCTGCAGGCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAGGTGAGATAATCTGCCGACAGTATGGCTGGACCGGCATAGTTGCTTTGCCAGCAACAACTTCCTACATATAGCATTGCTATTTGTAGATCCATGCTCTACTTGCAAATTATTCTCTGGACAAGTCATGAGTTTTTAATCAGAAAGCAAGTGACATTGTTATATATTTTTTAAGTCAGAAATAATAAAAGGAACATCATTCACTTACATATACAACAACTACCCGTCAGTTCCAAACTAGTCGGGGTCGTTATATGATTTTTGCTGTCCATGTTACTCCATTTAATCCCATATCTTGCGGACTTGTAAAGTTTAGAATCTCTATATTTTCTTAACTGACAAACTTCTGAAAAGCTAAAACACTCCTAGAAAGTATAGGACCTACAGGAAAATTCTAATATATTAATATATTCTCGACTAATATGTAGCATATATATAGAATTTTTTCTTCCATTGTGCCTTTCGTAAGTTCACATGGATCCTTAAAATTATAGGTCCTTAAAGACAACTTCCTTCCATGTGATTTTAGGTCTACTTCGTTTTTTAACAGCTCCACTCACCATAGTTTCACACTCAGGAGTCAGTGCATCAGGAGGGGTTAATGCAAGACATAATCAAATCATCTCAAGGAACAGCTGAGTTCTTAAAGAATACTTAAAACAATACCCATTAAAGAATACTTAAAACAATCAATGGGATTATAGGAAAAGGTTAGGAATTGTTTATGTAAAACTAATTCTGTATCAGCATAGCTGCATATGGGAAATTGGTTTTGTACCGTAAGTTAGTGGTTCATAAACTATCAATGCTATTGAAGCAAGTCTGAGTTCTTCTTTTCTTGCACTTCAGATACTTCAAGGGCCCTGAACTTCTAGTTGACTTGCAAGACTATGACTATTCTTTGGACATGTGGAGCCTTGGCTGCATGTTTGCAGGAATGGTGAGAAATTCTATGATTCATAATATAAGCTGTCAGTTGGTTTATAGTTTTATGCTATCAGTTGTGGGCCTGGGAAACTACAAACATCCGAAAGGACTTGTTAGAAGTTTGTATTTTGCTTATTTGAAATCAATTTTCCTTTTCCTCCTGTTTTCTTTGTGTCTGACCATACCTTTTCCTTGGTAGATTTTCCGCAAGGAACCTTTCTTTTATGGCCATGATAATCAGGATCAGCTCGTCAAAATTGCAAAGGTAATGCGTAGTAACTGACCAGTGACCAATGGGTTTATATACCTTAATTTTGTTGTTTGAGTGAGAGGGGGGAAGTTGATCATCTGAAAACAACCAAAGAAGTTGTTACTTCAGTTGCAAGTGAACACTCAATTTATAGAAGTAAAGCATAACTGCTTGACATGGAGTTGATAGATTATTGTTGTTATAGGTACTTGGGACAGATGAGTTGAATGCGTACTTGCACAAGTATCAACTAGAGCTTGATCCTCAG</genome_strand>
        <mrna_strand>ATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGAGGAAAATATAGTGAAGTTTTTGAAGGTATAAATGTTCACAGCAACGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGAGAGAGATCAAAATCTTGCAGAACCTCTGTGGCGGACCAAATGTTGTCAAACTCCTTGATATTGTCAGAGACCAGCACTCAAAAACACCAAGCTTAATTTTTGAGTATGTGAACAGTACAGATTTCAAAGTACTGTACCCAACATTAACGGATTATGACATACGCTACTACATATATGAGCTTCTCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTAGACTATTGTCATTCTCAGGGAATAATGCACAGAGATGTCAAGCCACATAATGTTATGATAGACCATGAGTTGCGGAAGCTTCGCTTGATAGACTGGGGTCTTGCTGAATTTTACCATCCAGGAAAGGAATATAATGTCCGTGTGGCTTCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTCAAGGGCCCTGAACTTCTAGTTGACTTGCAAGATTATGACTATTCTTTGGACATGTGGAGCCTTGGATGCATGTTTGCAGGAATG..........................................................................................................................................................................................ATCTTCCGCAAGGAACCTTTCTTCTATGGCCATGATAACCAGGATCAGCTTGTCAAAATTGCTAAG..............................................................................................................................................................................................GTACTTGGAACTGATGAGTTGAATGCATATTTGCACAAGTATCAACTGGAGCTTGATCCTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E275442" ref_strand="+" ref_description="SGN-E275442 [cLEN-10-F24]">
      <seq>tggaagaggaaaatacagagaagtttttgaaggtataaatgttaacagcagggagaagtgcgtaatcaagatcctgaaacctgttaagaagaaaaagatcaaaagagagataaagatattgcaaaatctctgtggtggaccaaatattgtcaaactccttgatatcgccagagatcagcattcaaaaactccaggcttgatttttgagtacgtgaacagcacagatttcaagggtttgtacccaacgctaacagactatgacataccgtactacatatatgagcttctcaaggcactagattattgccattcacagggaataatgcacagggatgtcaaacctcataacgttatgatagaccatgaactgcggaagcttcggttgatagattggggtcttgccgaattttaccacccagggaaggaatataatgttcgtgtggcttcaagatacttcaagggccctgaacttctagttgacttgcaagactatgactattctttggacatgtggagccttggctgcatgtttgcaggaatgattttacgcacggaacctttcttttatggccatgataatcaggatcagctcggtaaaattgcaaaggtacttgggacagatgagttgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="82075" stop="77584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81775" g_stop="81679" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81678" i_stop="81120" i_length="559">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.273" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81119" g_stop="80925" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="292" r_length="195" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80924" i_stop="79445" i_length="1480">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79444" g_stop="79287" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="450" r_length="158" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79286" i_stop="78441" i_length="846">
            <donor d_prob="0.568" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78440" g_stop="78350" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="541" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78349" i_stop="78164" i_length="186">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78163" g_stop="78098" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="607" r_length="66" r_score="0.939"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78097" i_stop="77908" i_length="190">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="77907" g_stop="77884" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="631" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E275442" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81775" e_stop="81679"/>
          <exon e_start="81119" e_stop="80925"/>
          <exon e_start="79444" e_stop="79287"/>
          <exon e_start="78440" e_stop="78350"/>
          <exon e_start="78163" e_stop="78098"/>
          <exon e_start="77907" e_stop="77884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAGGTAAGATGATAAACACATCAGATGGCAGTCAATATGGCTTTTATGTATTCATGCTCCCTCTCCCCTGATTCTTTTTTTTTTTTTTAAGGAAGGTAACAGTTATATACTTCCTGTCCTCTTGGTCCTCCTTTTCTGTATCTTCTTTCTTCTCTCAGAACCAAGAATAGAGTTGTACTGATGTCTTAACTTACTATCTGGTCAAAACTTTGTTTGTCTCCAACATTTCCTTCTATTGCAGCTTTTCAAGGTTTGTATGAGTATGAGAATTTTGGGAGTCCCCAGTTTTCTTATGCTCAGCAACTATTTCTGAATTGAGTGGATATATTCTCATATACTATGATCAAATTATGAGATCAAACTATCAAAGTTATAACTCCTAGGCTCATCTCAAGTGGAAATTTTGGAATCCAAGATTCTGGTGCCATAAAACTGCACTAATTTGGATTCATCTTATATCTATATTTAGATAATTGGGAGTCTGTCGAATGTGTCTCGTGATCTTGGGTTAGTGGGAATGACTAAGACTGTAAACTCATATTTGTTCACCTTATCCTGCCTGCCAATACATGGATTTCAAATCCATCATCAAAAATGTAGATTTTTCTTATTGATATTGTCAGCTCATTCACTGTCTTGGTCATTCCAATTGATTACCTTTCCTCTGCAATTCGGTCTAAGTATAGCTTCTGAATGTGTTTTTTACAAGGTAAATGACCTCATAGTGAGGTGCTTACCATGTCTCTTGTTATCAGATGATATGAATTAGATTCACTGCATGCCTATTGGAAGTTGATTTTATATCTAGATTAATGGCTATGCTCGTTGTTACTCTTAACAATGTGACATTTTTTTTCTGACTTTGGATTTCTTAAGTAACTCTCTTGTATTCTTCTGATCTTATAATTGGTTAAGGAAAAAAAATTCACCAATGCCATGGATATTCTCTCCTCTGTTTGCTAATTGCTATTTAAATTTCATTTTCCTTTTTCACGAGTAATATTATATTCCCTTTTTGTCTGATTTGCGTGAGAGTAACTATTTGGAAATGGGGATGCTAATTATTGGATCCTGTTGATTTCTATCTCGAAGTTAGTTCTTCCTTTTTGCTACATGCCTACATCACCAGCCTACCTGATCATATGTCTAGGTTTCCTTTCTTTTGCCTCCTCCTGCGAAAAAAAGAAAAGAAATTTAACTTCTCAAGCTTTCTCATTGTGTATCAGCATAATTGTTTGTCAAATGCTAGATCTGTTCCTGCATACTTACTTTCCATTCGCTTAATTTACTCTATTAATTTCCCCTTCTTTTTTGAAAGAAAAGAAAGAATCACGTTTTTGGCATGACTGCTGAATTTGCTGAGGCCTTCATTTCTTGTGACAGTTGTTTAATAGACTCTTTGGGACCTATTCTTTGTGTACATTTCTTGACATGCTTACCAATTTATGGAGGTCGAAAACTGAAACTTCTTATCAACCTGCAGGCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAGGTGAGATAATCTGCCGACAGTATGGCTGGACCGGCATAGTTGCTTTGCCAGCAACAACTTCCTACATATAGCATTGCTATTTGTAGATCCATGCTCTACTTGCAAATTATTCTCTGGACAAGTCATGAGTTTTTAATCAGAAAGCAAGTGACATTGTTATATATTTTTTAAGTCAGAAATAATAAAAGGAACATCATTCACTTACATATACAACAACTACCCGTCAGTTCCAAACTAGTCGGGGTCGTTATATGATTTTTGCTGTCCATGTTACTCCATTTAATCCCATATCTTGCGGACTTGTAAAGTTTAGAATCTCTATATTTTCTTAACTGACAAACTTCTGAAAAGCTAAAACACTCCTAGAAAGTATAGGACCTACAGGAAAATTCTAATATATTAATATATTCTCGACTAATATGTAGCATATATATAGAATTTTTTCTTCCATTGTGCCTTTCGTAAGTTCACATGGATCCTTAAAATTATAGGTCCTTAAAGACAACTTCCTTCCATGTGATTTTAGGTCTACTTCGTTTTTTAACAGCTCCACTCACCATAGTTTCACACTCAGGAGTCAGTGCATCAGGAGGGGTTAATGCAAGACATAATCAAATCATCTCAAGGAACAGCTGAGTTCTTAAAGAATACTTAAAACAATACCCATTAAAGAATACTTAAAACAATCAATGGGATTATAGGAAAAGGTTAGGAATTGTTTATGTAAAACTAATTCTGTATCAGCATAGCTGCATATGGGAAATTGGTTTTGTACCGTAAGTTAGTGGTTCATAAACTATCAATGCTATTGAAGCAAGTCTGAGTTCTTCTTTTCTTGCACTTCAGATACTTCAAGGGCCCTGAACTTCTAGTTGACTTGCAAGACTATGACTATTCTTTGGACATGTGGAGCCTTGGCTGCATGTTTGCAGGAATGGTGAGAAATTCTATGATTCATAATATAAGCTGTCAGTTGGTTTATAGTTTTATGCTATCAGTTGTGGGCCTGGGAAACTACAAACATCCGAAAGGACTTGTTAGAAGTTTGTATTTTGCTTATTTGAAATCAATTTTCCTTTTCCTCCTGTTTTCTTTGTGTCTGACCATACCTTTTCCTTGGTAGATTTTCCGCAAGGAACCTTTCTTTTATGGCCATGATAATCAGGATCAGCTCGTCAAAATTGCAAAGGTAATGCGTAGTAACTGACCAGTGACCAATGGGTTTATATACCTTAATTTTGTTGTTTGAGTGAGAGGGGGGAAGTTGATCATCTGAAAACAACCAAAGAAGTTGTTACTTCAGTTGCAAGTGAACACTCAATTTATAGAAGTAAAGCATAACTGCTTGACATGGAGTTGATAGATTATTGTTGTTATAGGTACTTGGGACAGATGAGTTGAAT</genome_strand>
        <mrna_strand>TGGAAGAGGAAAATACAGAGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCGTAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGCCAGAGATCAGCATTCAAAAACTCCAGGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGGTTTGTACCCAACGCTAACAGACTATGACATACCGTACTACATATATGAGCTTCTCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGGTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTCAAGGGCCCTGAACTTCTAGTTGACTTGCAAGACTATGACTATTCTTTGGACATGTGGAGCCTTGGCTGCATGTTTGCAGGAATG..........................................................................................................................................................................................ATTTTACGCACGGAACCTTTCTTTTATGGCCATGATAATCAGGATCAGCTCGGTAAAATTGCAAAG..............................................................................................................................................................................................GTACTTGGGACAGATGAGTTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E397675" ref_strand="+" ref_description="SGN-E397675 [TUS-46-I14]">
      <seq>gtttttgaaggtataagagtctaactgccgggagaagtgcatagtcgagatcctgaaacctgttaagaagaaaaagatcaaaagagagataaagatattgcaaaatctctgtggtggaccaaatattgtcaaactccttgatatcgtcagagatcagcattcaaaaactccaagcttgatttttgagtacgtgaacagcacagatttcaaggttttgtacccaacgctaacagactatgacatacggtactacatatatgagcttctcaaggcactagattattgccattcacagggaataatgcacagggatgtcaaacctcataacgttatgatagaccatgaactgcggaagcttcgcttgatagattggggtcttgccgaattttaccacccagggaaggaatataatgttcgtgtggcttcaagaatacttcaagggccctgaacttctagttgacttgcaagactatgacaattctttggacatgtggagccttggctgcatgtttgccagaatgatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="82053" stop="78048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81753" g_stop="81679" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.893"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81678" i_stop="81120" i_length="559">
            <donor d_prob="0.975" d_score="0.94"/>
            <acceptor a_prob="0.273" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81119" g_stop="80925" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="271" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80924" i_stop="79445" i_length="1480">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79444" g_stop="79287" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="429" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79286" i_stop="78441" i_length="846">
            <donor d_prob="0.568" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78440" g_stop="78350" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="521" r_length="92" r_score="0.945"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78349" i_stop="78164" i_length="186">
            <donor d_prob="0.930" d_score="0.94"/>
            <acceptor a_prob="0.941" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78163" g_stop="78159" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="526" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E397675" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81753" e_stop="81679"/>
          <exon e_start="81119" e_stop="80925"/>
          <exon e_start="79444" e_stop="79287"/>
          <exon e_start="78440" e_stop="78350"/>
          <exon e_start="78163" e_stop="78159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTGAAGGTATAAATGT-TAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAGGTAAGATGATAAACACATCAGATGGCAGTCAATATGGCTTTTATGTATTCATGCTCCCTCTCCCCTGATTCTTTTTTTTTTTTTTAAGGAAGGTAACAGTTATATACTTCCTGTCCTCTTGGTCCTCCTTTTCTGTATCTTCTTTCTTCTCTCAGAACCAAGAATAGAGTTGTACTGATGTCTTAACTTACTATCTGGTCAAAACTTTGTTTGTCTCCAACATTTCCTTCTATTGCAGCTTTTCAAGGTTTGTATGAGTATGAGAATTTTGGGAGTCCCCAGTTTTCTTATGCTCAGCAACTATTTCTGAATTGAGTGGATATATTCTCATATACTATGATCAAATTATGAGATCAAACTATCAAAGTTATAACTCCTAGGCTCATCTCAAGTGGAAATTTTGGAATCCAAGATTCTGGTGCCATAAAACTGCACTAATTTGGATTCATCTTATATCTATATTTAGATAATTGGGAGTCTGTCGAATGTGTCTCGTGATCTTGGGTTAGTGGGAATGACTAAGACTGTAAACTCATATTTGTTCACCTTATCCTGCCTGCCAATACATGGATTTCAAATCCATCATCAAAAATGTAGATTTTTCTTATTGATATTGTCAGCTCATTCACTGTCTTGGTCATTCCAATTGATTACCTTTCCTCTGCAATTCGGTCTAAGTATAGCTTCTGAATGTGTTTTTTACAAGGTAAATGACCTCATAGTGAGGTGCTTACCATGTCTCTTGTTATCAGATGATATGAATTAGATTCACTGCATGCCTATTGGAAGTTGATTTTATATCTAGATTAATGGCTATGCTCGTTGTTACTCTTAACAATGTGACATTTTTTTTCTGACTTTGGATTTCTTAAGTAACTCTCTTGTATTCTTCTGATCTTATAATTGGTTAAGGAAAAAAAATTCACCAATGCCATGGATATTCTCTCCTCTGTTTGCTAATTGCTATTTAAATTTCATTTTCCTTTTTCACGAGTAATATTATATTCCCTTTTTGTCTGATTTGCGTGAGAGTAACTATTTGGAAATGGGGATGCTAATTATTGGATCCTGTTGATTTCTATCTCGAAGTTAGTTCTTCCTTTTTGCTACATGCCTACATCACCAGCCTACCTGATCATATGTCTAGGTTTCCTTTCTTTTGCCTCCTCCTGCGAAAAAAAGAAAAGAAATTTAACTTCTCAAGCTTTCTCATTGTGTATCAGCATAATTGTTTGTCAAATGCTAGATCTGTTCCTGCATACTTACTTTCCATTCGCTTAATTTACTCTATTAATTTCCCCTTCTTTTTTGAAAGAAAAGAAAGAATCACGTTTTTGGCATGACTGCTGAATTTGCTGAGGCCTTCATTTCTTGTGACAGTTGTTTAATAGACTCTTTGGGACCTATTCTTTGTGTACATTTCTTGACATGCTTACCAATTTATGGAGGTCGAAAACTGAAACTTCTTATCAACCTGCAGGCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAGGTGAGATAATCTGCCGACAGTATGGCTGGACCGGCATAGTTGCTTTGCCAGCAACAACTTCCTACATATAGCATTGCTATTTGTAGATCCATGCTCTACTTGCAAATTATTCTCTGGACAAGTCATGAGTTTTTAATCAGAAAGCAAGTGACATTGTTATATATTTTTTAAGTCAGAAATAATAAAAGGAACATCATTCACTTACATATACAACAACTACCCGTCAGTTCCAAACTAGTCGGGGTCGTTATATGATTTTTGCTGTCCATGTTACTCCATTTAATCCCATATCTTGCGGACTTGTAAAGTTTAGAATCTCTATATTTTCTTAACTGACAAACTTCTGAAAAGCTAAAACACTCCTAGAAAGTATAGGACCTACAGGAAAATTCTAATATATTAATATATTCTCGACTAATATGTAGCATATATATAGAATTTTTTCTTCCATTGTGCCTTTCGTAAGTTCACATGGATCCTTAAAATTATAGGTCCTTAAAGACAACTTCCTTCCATGTGATTTTAGGTCTACTTCGTTTTTTAACAGCTCCACTCACCATAGTTTCACACTCAGGAGTCAGTGCATCAGGAGGGGTTAATGCAAGACATAATCAAATCATCTCAAGGAACAGCTGAGTTCTTAAAGAATACTTAAAACAATACCCATTAAAGAATACTTAAAACAATCAATGGGATTATAGGAAAAGGTTAGGAATTGTTTATGTAAAACTAATTCTGTATCAGCATAGCTGCATATGGGAAATTGGTTTTGTACCGTAAGTTAGTGGTTCATAAACTATCAATGCTATTGAAGCAAGTCTGAGTTCTTCTTTTCTTGCACTTCAG-ATACTTCAAGGGCCCTGAACTTCTAGTTGACTTGCAAGACTATGACTATTCTTTGGACATGTGGAGCCTTGGCTGCATGTTTGCAGGAATGGTGAGAAATTCTATGATTCATAATATAAGCTGTCAGTTGGTTTATAGTTTTATGCTATCAGTTGTGGGCCTGGGAAACTACAAACATCCGAAAGGACTTGTTAGAAGTTTGTATTTTGCTTATTTGAAATCAATTTTCCTTTTCCTCCTGTTTTCTTTGTGTCTGACCATACCTTTTCCTTGGTAGATTTT</genome_strand>
        <mrna_strand>GTTTTTGAAGGTATAAGAGTCTAACTGCCGGGAGAAGTGCATAGTCGAGATCCTGAAACCTGTTAAGAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACTTCAAGGGCCCTGAACTTCTAGTTGACTTGCAAGACTATGACAATTCTTTGGACATGTGGAGCCTTGGCTGCATGTTTGCCAGAATG..........................................................................................................................................................................................ATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E445665" ref_strand="+" ref_description="SGN-E445665 [cSTA-18-I21]">
      <seq>gaagtgcataatcaagatcctgaaacctgttaagaagaaaaagatcaagagagagatcaaaatcttgcagaacctctgtggcggaccaaatgttgtcaaactccttgatattgtcagagaccagcactcaaaaacaccaagcttaatttttgagtatgtgaacagtacagatttcaaagtactgtacccaactttaacggattatgacatacgctactacatatatgagcttctcaaggcactagactattgtcattctcagggaataatgcacagagatgtcaagccacataatgttatgatagaccatgagttgcggaagcttcgcttgatagactggggtcttgctgaattttaccatccaggaaaggaatataatgtccgtgtggcttcaagatacttcaagggccctgaacttctagttgacttgcaagattatgactattctttggacatgtggagccttggatgcatgtttgcaggaatgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="82021" stop="78048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81721" g_stop="81679" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81678" i_stop="81120" i_length="559">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.273" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81119" g_stop="80925" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="238" r_length="195" r_score="0.882"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80924" i_stop="79445" i_length="1480">
            <donor d_prob="0.989" d_score="0.90"/>
            <acceptor a_prob="0.992" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79444" g_stop="79287" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="396" r_length="158" r_score="0.911"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79286" i_stop="78441" i_length="846">
            <donor d_prob="0.568" d_score="0.92"/>
            <acceptor a_prob="0.911" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78440" g_stop="78350" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="487" r_length="91" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E445665" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E445665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81721" e_stop="81679"/>
          <exon e_start="81119" e_stop="80925"/>
          <exon e_start="79444" e_stop="79287"/>
          <exon e_start="78440" e_stop="78350"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAGGTAAGATGATAAACACATCAGATGGCAGTCAATATGGCTTTTATGTATTCATGCTCCCTCTCCCCTGATTCTTTTTTTTTTTTTTAAGGAAGGTAACAGTTATATACTTCCTGTCCTCTTGGTCCTCCTTTTCTGTATCTTCTTTCTTCTCTCAGAACCAAGAATAGAGTTGTACTGATGTCTTAACTTACTATCTGGTCAAAACTTTGTTTGTCTCCAACATTTCCTTCTATTGCAGCTTTTCAAGGTTTGTATGAGTATGAGAATTTTGGGAGTCCCCAGTTTTCTTATGCTCAGCAACTATTTCTGAATTGAGTGGATATATTCTCATATACTATGATCAAATTATGAGATCAAACTATCAAAGTTATAACTCCTAGGCTCATCTCAAGTGGAAATTTTGGAATCCAAGATTCTGGTGCCATAAAACTGCACTAATTTGGATTCATCTTATATCTATATTTAGATAATTGGGAGTCTGTCGAATGTGTCTCGTGATCTTGGGTTAGTGGGAATGACTAAGACTGTAAACTCATATTTGTTCACCTTATCCTGCCTGCCAATACATGGATTTCAAATCCATCATCAAAAATGTAGATTTTTCTTATTGATATTGTCAGCTCATTCACTGTCTTGGTCATTCCAATTGATTACCTTTCCTCTGCAATTCGGTCTAAGTATAGCTTCTGAATGTGTTTTTTACAAGGTAAATGACCTCATAGTGAGGTGCTTACCATGTCTCTTGTTATCAGATGATATGAATTAGATTCACTGCATGCCTATTGGAAGTTGATTTTATATCTAGATTAATGGCTATGCTCGTTGTTACTCTTAACAATGTGACATTTTTTTTCTGACTTTGGATTTCTTAAGTAACTCTCTTGTATTCTTCTGATCTTATAATTGGTTAAGGAAAAAAAATTCACCAATGCCATGGATATTCTCTCCTCTGTTTGCTAATTGCTATTTAAATTTCATTTTCCTTTTTCACGAGTAATATTATATTCCCTTTTTGTCTGATTTGCGTGAGAGTAACTATTTGGAAATGGGGATGCTAATTATTGGATCCTGTTGATTTCTATCTCGAAGTTAGTTCTTCCTTTTTGCTACATGCCTACATCACCAGCCTACCTGATCATATGTCTAGGTTTCCTTTCTTTTGCCTCCTCCTGCGAAAAAAAGAAAAGAAATTTAACTTCTCAAGCTTTCTCATTGTGTATCAGCATAATTGTTTGTCAAATGCTAGATCTGTTCCTGCATACTTACTTTCCATTCGCTTAATTTACTCTATTAATTTCCCCTTCTTTTTTGAAAGAAAAGAAAGAATCACGTTTTTGGCATGACTGCTGAATTTGCTGAGGCCTTCATTTCTTGTGACAGTTGTTTAATAGACTCTTTGGGACCTATTCTTTGTGTACATTTCTTGACATGCTTACCAATTTATGGAGGTCGAAAACTGAAACTTCTTATCAACCTGCAGGCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAGGTGAGATAATCTGCCGACAGTATGGCTGGACCGGCATAGTTGCTTTGCCAGCAACAACTTCCTACATATAGCATTGCTATTTGTAGATCCATGCTCTACTTGCAAATTATTCTCTGGACAAGTCATGAGTTTTTAATCAGAAAGCAAGTGACATTGTTATATATTTTTTAAGTCAGAAATAATAAAAGGAACATCATTCACTTACATATACAACAACTACCCGTCAGTTCCAAACTAGTCGGGGTCGTTATATGATTTTTGCTGTCCATGTTACTCCATTTAATCCCATATCTTGCGGACTTGTAAAGTTTAGAATCTCTATATTTTCTTAACTGACAAACTTCTGAAAAGCTAAAACACTCCTAGAAAGTATAGGACCTACAGGAAAATTCTAATATATTAATATATTCTCGACTAATATGTAGCATATATATAGAATTTTTTCTTCCATTGTGCCTTTCGTAAGTTCACATGGATCCTTAAAATTATAGGTCCTTAAAGACAACTTCCTTCCATGTGATTTTAGGTCTACTTCGTTTTTTAACAGCTCCACTCACCATAGTTTCACACTCAGGAGTCAGTGCATCAGGAGGGGTTAATGCAAGACATAATCAAATCATCTCAAGGAACAGCTGAGTTCTTAAAGAATACTTAAAACAATACCCATTAAAGAATACTTAAAACAATCAATGGGATTATAGGAAAAGGTTAGGAATTGTTTATGTAAAACTAATTCTGTATCAGCATAGCTGCATATGGGAAATTGGTTTTGTACCGTAAGTTAGTGGTTCATAAACTATCAATGCTATTGAAGCAAGTCTGAGTTCTTCTTTTCTTGCACTTCAGATACTTCAAGGGCCCTGAACTTCTAGTTGACTTGCAAGACTATGACTATTCTTTGGACATGTGGAGCCTTGGCTGCATGTTTGCAGGAATG</genome_strand>
        <mrna_strand>GAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGAGAGAGATCAAAATCTTGCAGAACCTCTGTGGCGGACCAAATGTTGTCAAACTCCTTGATATTGTCAGAGACCAGCACTCAAAAACACCAAGCTTAATTTTTGAGTATGTGAACAGTACAGATTTCAAAGTACTGTACCCAACTTTAACGGATTATGACATACGCTACTACATATATGAGCTTCTCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTAGACTATTGTCATTCTCAGGGAATAATGCACAGAGATGTCAAGCCACATAATGTTATGATAGACCATGAGTTGCGGAAGCTTCGCTTGATAGACTGGGGTCTTGCTGAATTTTACCATCCAGGAAAGGAATATAATGTCCGTGTGGCTTCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTCAAGGGCCCTGAACTTCTAGTTGACTTGCAAGATTATGACTATTCTTTGGACATGTGGAGCCTTGGATGCATGTTTGCAGGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E206632" ref_strand="+" ref_description="SGN-E206632 [cLEC-31-J9]">
      <seq>gaccagcactcaaaaacaccaagcttaatttttgagtatgtgaacagtacagatttcaaagtactgtacccaacattaacggattatgacatacgctactacatatatgagcttctcaaggcactagactattgtcattctcagggaataatgcacagagatgtcaagccacataatgttatgatagaccatgagttgcggaagcttcgcttgatagactggggtcttgctgaattttaccatccaggaaaggaatataatgtccgtgtggcttcaagatacttcaagggccctgaacttctagttgacttgcaagactatgactattctttggacatgtggagccttggatgcatgtttgcaggaatgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="81344" stop="78048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81044" g_stop="80925" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.883"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80924" i_stop="79445" i_length="1480">
            <donor d_prob="0.989" d_score="0.90"/>
            <acceptor a_prob="0.992" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79444" g_stop="79287" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="278" r_length="158" r_score="0.911"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79286" i_stop="78441" i_length="846">
            <donor d_prob="0.568" d_score="0.92"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78440" g_stop="78350" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="369" r_length="91" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E206632" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81044" e_stop="80925"/>
          <exon e_start="79444" e_stop="79287"/>
          <exon e_start="78440" e_stop="78350"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAGGTAAGATGATAAACACATCAGATGGCAGTCAATATGGCTTTTATGTATTCATGCTCCCTCTCCCCTGATTCTTTTTTTTTTTTTTAAGGAAGGTAACAGTTATATACTTCCTGTCCTCTTGGTCCTCCTTTTCTGTATCTTCTTTCTTCTCTCAGAACCAAGAATAGAGTTGTACTGATGTCTTAACTTACTATCTGGTCAAAACTTTGTTTGTCTCCAACATTTCCTTCTATTGCAGCTTTTCAAGGTTTGTATGAGTATGAGAATTTTGGGAGTCCCCAGTTTTCTTATGCTCAGCAACTATTTCTGAATTGAGTGGATATATTCTCATATACTATGATCAAATTATGAGATCAAACTATCAAAGTTATAACTCCTAGGCTCATCTCAAGTGGAAATTTTGGAATCCAAGATTCTGGTGCCATAAAACTGCACTAATTTGGATTCATCTTATATCTATATTTAGATAATTGGGAGTCTGTCGAATGTGTCTCGTGATCTTGGGTTAGTGGGAATGACTAAGACTGTAAACTCATATTTGTTCACCTTATCCTGCCTGCCAATACATGGATTTCAAATCCATCATCAAAAATGTAGATTTTTCTTATTGATATTGTCAGCTCATTCACTGTCTTGGTCATTCCAATTGATTACCTTTCCTCTGCAATTCGGTCTAAGTATAGCTTCTGAATGTGTTTTTTACAAGGTAAATGACCTCATAGTGAGGTGCTTACCATGTCTCTTGTTATCAGATGATATGAATTAGATTCACTGCATGCCTATTGGAAGTTGATTTTATATCTAGATTAATGGCTATGCTCGTTGTTACTCTTAACAATGTGACATTTTTTTTCTGACTTTGGATTTCTTAAGTAACTCTCTTGTATTCTTCTGATCTTATAATTGGTTAAGGAAAAAAAATTCACCAATGCCATGGATATTCTCTCCTCTGTTTGCTAATTGCTATTTAAATTTCATTTTCCTTTTTCACGAGTAATATTATATTCCCTTTTTGTCTGATTTGCGTGAGAGTAACTATTTGGAAATGGGGATGCTAATTATTGGATCCTGTTGATTTCTATCTCGAAGTTAGTTCTTCCTTTTTGCTACATGCCTACATCACCAGCCTACCTGATCATATGTCTAGGTTTCCTTTCTTTTGCCTCCTCCTGCGAAAAAAAGAAAAGAAATTTAACTTCTCAAGCTTTCTCATTGTGTATCAGCATAATTGTTTGTCAAATGCTAGATCTGTTCCTGCATACTTACTTTCCATTCGCTTAATTTACTCTATTAATTTCCCCTTCTTTTTTGAAAGAAAAGAAAGAATCACGTTTTTGGCATGACTGCTGAATTTGCTGAGGCCTTCATTTCTTGTGACAGTTGTTTAATAGACTCTTTGGGACCTATTCTTTGTGTACATTTCTTGACATGCTTACCAATTTATGGAGGTCGAAAACTGAAACTTCTTATCAACCTGCAGGCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAGGTGAGATAATCTGCCGACAGTATGGCTGGACCGGCATAGTTGCTTTGCCAGCAACAACTTCCTACATATAGCATTGCTATTTGTAGATCCATGCTCTACTTGCAAATTATTCTCTGGACAAGTCATGAGTTTTTAATCAGAAAGCAAGTGACATTGTTATATATTTTTTAAGTCAGAAATAATAAAAGGAACATCATTCACTTACATATACAACAACTACCCGTCAGTTCCAAACTAGTCGGGGTCGTTATATGATTTTTGCTGTCCATGTTACTCCATTTAATCCCATATCTTGCGGACTTGTAAAGTTTAGAATCTCTATATTTTCTTAACTGACAAACTTCTGAAAAGCTAAAACACTCCTAGAAAGTATAGGACCTACAGGAAAATTCTAATATATTAATATATTCTCGACTAATATGTAGCATATATATAGAATTTTTTCTTCCATTGTGCCTTTCGTAAGTTCACATGGATCCTTAAAATTATAGGTCCTTAAAGACAACTTCCTTCCATGTGATTTTAGGTCTACTTCGTTTTTTAACAGCTCCACTCACCATAGTTTCACACTCAGGAGTCAGTGCATCAGGAGGGGTTAATGCAAGACATAATCAAATCATCTCAAGGAACAGCTGAGTTCTTAAAGAATACTTAAAACAATACCCATTAAAGAATACTTAAAACAATCAATGGGATTATAGGAAAAGGTTAGGAATTGTTTATGTAAAACTAATTCTGTATCAGCATAGCTGCATATGGGAAATTGGTTTTGTACCGTAAGTTAGTGGTTCATAAACTATCAATGCTATTGAAGCAAGTCTGAGTTCTTCTTTTCTTGCACTTCAGATACTTCAAGGGCCCTGAACTTCTAGTTGACTTGCAAGACTATGACTATTCTTTGGACATGTGGAGCCTTGGCTGCATGTTTGCAGGAATG</genome_strand>
        <mrna_strand>GACCAGCACTCAAAAACACCAAGCTTAATTTTTGAGTATGTGAACAGTACAGATTTCAAAGTACTGTACCCAACATTAACGGATTATGACATACGCTACTACATATATGAGCTTCTCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTAGACTATTGTCATTCTCAGGGAATAATGCACAGAGATGTCAAGCCACATAATGTTATGATAGACCATGAGTTGCGGAAGCTTCGCTTGATAGACTGGGGTCTTGCTGAATTTTACCATCCAGGAAAGGAATATAATGTCCGTGTGGCTTCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTCAAGGGCCCTGAACTTCTAGTTGACTTGCAAGACTATGACTATTCTTTGGACATGTGGAGCCTTGGATGCATGTTTGCAGGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E702342" ref_strand="+" ref_description="SGN-E702342 [FA18BH01]">
      <seq>aggagagcaaaaagctttcccaatctatggctttttcctaaaaatggtgtgtgagtaaagtagtgttattgctctggcggttgcatcaaacagaagcggggcccaattccttcgttgcatctacccagcctgcgtcttctttgttgtcccttttccgaaatccgatacctttatcaataactcttcagtctctgatttccggataaaccatgtccaaagctcgagtatacaccgatatcaatgtgcttcgtcctagggaatattgggattacgaatcgctaactgttcaatggggtgatcaggatgactatgaggttgttcgaaaagttggaagaggaaaatacagtgaagtttttgaaggtataaatgttaacagcagggagaagtgcataatcaagatcctgaaacctgttaagaagaaaaagatcaaaagagagataaagatattgcaaaatctctgtggtggaccaaatattgtcaaactccttgatatcgtcagagatcagcattcaaaaactccaagcttgatttttgagtacgtgaacagcacagatttcaaggttttgtacccaacgctaacagactatgacatacggtactacatatatgagcttctcaaggcactagattattgccattcacagggaataatgcacagggatgtcaaacctcataacgttatgatagaccatgaactgcggaagcttcgcttgatagattggggtcttgccgaattttaccacccagggaaggaatataatgttcgtgtggcttcaagatacttncagggccctgaacttctagttgacttgcaagactatgactattctttggacatgtggagccttggctgcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="83580" stop="78062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83280" g_stop="82985" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82984" i_stop="81809" i_length="1176">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81808" g_stop="81679" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="425" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81678" i_stop="81120" i_length="559">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.273" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81119" g_stop="80925" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="620" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80924" i_stop="79445" i_length="1480">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79444" g_stop="79287" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="778" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79286" i_stop="78441" i_length="846">
            <donor d_prob="0.568" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78440" g_stop="78362" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="779" r_stop="857" r_length="79" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E702342" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83280" e_stop="82985"/>
          <exon e_start="81808" e_stop="81679"/>
          <exon e_start="81119" e_stop="80925"/>
          <exon e_start="79444" e_stop="79287"/>
          <exon e_start="78440" e_stop="78362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGGGTAAATATTTTCCCTTATTTAACCCTAATCGCTTTTGATTTTGTTTTTAGTTTTGGGGGTTTGTATACTGGATAATAGATTGAAATTCTTGAATTAGATGCTGTTTATTACCTTTTTTTAAAAAGATTGTTTGGTAAAATAATAACATCCACTTCTAGCATCCAAGAAAATAGTTTTTGCTTATGTTTCCTTGTTTTTTCCGTCTGAAGTAAAAAGTGGGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGGTATGTTTCCTTGTTTTTTTCGTCTGAAAGAAAAGTGGGTGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGTTATGTTTCCTTTTTTAAAGATAAGTGGAGGTTACATAGCATTGTAACATCCACTCCAGGGGTGGGTGAAACCTGAAAACAAATGTTGGGTTTCTTATTCCTATTTTTTGTCTAATAGATAATTGTGTGATCAGTGTTAGATGCTATTTTGGCGAATTCCTGCTATCTTGAATGGAATGACTTTCACATTGGAAAATACCTATTGGGTTAATGCAAAACTCCTGTCTAGTCTTGTTGAACTGAGTCTGTATTTTGTGGCTCCAGATTAGGTTGGGCTTCAAGTCTTTATATGTTTGTTACTTCTATATTAGCTTCCACATGATACAATGGAAGCTAAATAACAAATATAATATACCAATTAGTTGAGTTATATACCAATTTGTTGAGTTTAAGGATTGGTCCTGCTGGTGCACATTTGGACTGAAGTAAATGTTTGTGTAAGTCTTGTAATAAGAGTGAGATTTACAACCCGTTGTGTTAAAAGTTGAATTATTGAATACTTGAATGGAACAGCCCCGAAGTGGAGTGGATAATTATAGAGGCTTCATTTAGTTGACACCAGTTAGTTTATTTTTGTTATTGTATAGTTCTGCTGCATTTATCAAGATGAGAGCATTTTGTGTAACAAGAACTATATAAATGTCTTGCTAAAGTGGGAGAATATAGTTTGTTAATCTTGGTTCTAGAGTACCTTGACCCTTGGCTCAACGATTAGTTTTATCTTACACAAGTATTGGTTTCAGATATGATTCTATTTGACTTACTCAACTTTAATGCACCAGCTACATTGTATTATCCTCACTAGTGCATGTCATATTTATTATTGTAGTGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAGGTAAGATGATAAACACATCAGATGGCAGTCAATATGGCTTTTATGTATTCATGCTCCCTCTCCCCTGATTCTTTTTTTTTTTTTTAAGGAAGGTAACAGTTATATACTTCCTGTCCTCTTGGTCCTCCTTTTCTGTATCTTCTTTCTTCTCTCAGAACCAAGAATAGAGTTGTACTGATGTCTTAACTTACTATCTGGTCAAAACTTTGTTTGTCTCCAACATTTCCTTCTATTGCAGCTTTTCAAGGTTTGTATGAGTATGAGAATTTTGGGAGTCCCCAGTTTTCTTATGCTCAGCAACTATTTCTGAATTGAGTGGATATATTCTCATATACTATGATCAAATTATGAGATCAAACTATCAAAGTTATAACTCCTAGGCTCATCTCAAGTGGAAATTTTGGAATCCAAGATTCTGGTGCCATAAAACTGCACTAATTTGGATTCATCTTATATCTATATTTAGATAATTGGGAGTCTGTCGAATGTGTCTCGTGATCTTGGGTTAGTGGGAATGACTAAGACTGTAAACTCATATTTGTTCACCTTATCCTGCCTGCCAATACATGGATTTCAAATCCATCATCAAAAATGTAGATTTTTCTTATTGATATTGTCAGCTCATTCACTGTCTTGGTCATTCCAATTGATTACCTTTCCTCTGCAATTCGGTCTAAGTATAGCTTCTGAATGTGTTTTTTACAAGGTAAATGACCTCATAGTGAGGTGCTTACCATGTCTCTTGTTATCAGATGATATGAATTAGATTCACTGCATGCCTATTGGAAGTTGATTTTATATCTAGATTAATGGCTATGCTCGTTGTTACTCTTAACAATGTGACATTTTTTTTCTGACTTTGGATTTCTTAAGTAACTCTCTTGTATTCTTCTGATCTTATAATTGGTTAAGGAAAAAAAATTCACCAATGCCATGGATATTCTCTCCTCTGTTTGCTAATTGCTATTTAAATTTCATTTTCCTTTTTCACGAGTAATATTATATTCCCTTTTTGTCTGATTTGCGTGAGAGTAACTATTTGGAAATGGGGATGCTAATTATTGGATCCTGTTGATTTCTATCTCGAAGTTAGTTCTTCCTTTTTGCTACATGCCTACATCACCAGCCTACCTGATCATATGTCTAGGTTTCCTTTCTTTTGCCTCCTCCTGCGAAAAAAAGAAAAGAAATTTAACTTCTCAAGCTTTCTCATTGTGTATCAGCATAATTGTTTGTCAAATGCTAGATCTGTTCCTGCATACTTACTTTCCATTCGCTTAATTTACTCTATTAATTTCCCCTTCTTTTTTGAAAGAAAAGAAAGAATCACGTTTTTGGCATGACTGCTGAATTTGCTGAGGCCTTCATTTCTTGTGACAGTTGTTTAATAGACTCTTTGGGACCTATTCTTTGTGTACATTTCTTGACATGCTTACCAATTTATGGAGGTCGAAAACTGAAACTTCTTATCAACCTGCAGGCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAGGTGAGATAATCTGCCGACAGTATGGCTGGACCGGCATAGTTGCTTTGCCAGCAACAACTTCCTACATATAGCATTGCTATTTGTAGATCCATGCTCTACTTGCAAATTATTCTCTGGACAAGTCATGAGTTTTTAATCAGAAAGCAAGTGACATTGTTATATATTTTTTAAGTCAGAAATAATAAAAGGAACATCATTCACTTACATATACAACAACTACCCGTCAGTTCCAAACTAGTCGGGGTCGTTATATGATTTTTGCTGTCCATGTTACTCCATTTAATCCCATATCTTGCGGACTTGTAAAGTTTAGAATCTCTATATTTTCTTAACTGACAAACTTCTGAAAAGCTAAAACACTCCTAGAAAGTATAGGACCTACAGGAAAATTCTAATATATTAATATATTCTCGACTAATATGTAGCATATATATAGAATTTTTTCTTCCATTGTGCCTTTCGTAAGTTCACATGGATCCTTAAAATTATAGGTCCTTAAAGACAACTTCCTTCCATGTGATTTTAGGTCTACTTCGTTTTTTAACAGCTCCACTCACCATAGTTTCACACTCAGGAGTCAGTGCATCAGGAGGGGTTAATGCAAGACATAATCAAATCATCTCAAGGAACAGCTGAGTTCTTAAAGAATACTTAAAACAATACCCATTAAAGAATACTTAAAACAATCAATGGGATTATAGGAAAAGGTTAGGAATTGTTTATGTAAAACTAATTCTGTATCAGCATAGCTGCATATGGGAAATTGGTTTTGTACCGTAAGTTAGTGGTTCATAAACTATCAATGCTATTGAAGCAAGTCTGAGTTCTTCTTTTCTTGCACTTCAGATACTTCAAGGGCCCTGAACTTCTAGTTGACTTGCAAGACTATGACTATTCTTTGGACATGTGGAGCCTTGGCTGCATG</genome_strand>
        <mrna_strand>AG-GAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTNCAGGGCCCTGAACTTCTAGTTGACTTGCAAGACTATGACTATTCTTTGGACATGTGGAGCCTTGGCTGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E699179" ref_strand="+" ref_description="SGN-E699179 [FA08DH09]">
      <seq>ccttaagagagagcaaaaagctttcccaatctatggctttttcctaaaaatggtgtgtgagtaaagtagtgttattgctctggcggttgcatcaaacagaagcggggcccaattccttcgttgcatctacccagcctgcgtcttctttgttgtcccttttccgaaatccgatacctttatcaataactcttcagtctctgatttccggataaaccatgtccaaagctcgagtatacaccgatatcaatgtgcttcgtcctagggaatattgggattacgaatcgctaactgttcaatggggtgatcaggatgactatgaggttgttcgaaaagttggaagaggaaaatacagtgaagtttttgaaggtataaatgttaacagcagggagaagtgcataatcaagatcctgaaacctgttaagaagaaaaagatcaaaagagagataaagatattgcaaaatctctgtggtggaccaaatattgtcaaactccttgatatcgtcagagatcagcattcaaaaactccaagcttgatttttgagtacgtgaacagcacagatttcaaggttttgtacccaacgctaacagactatgacatacggtactacatatatgagcttctcaaggcactagattattgccattcacagggaataatgcacagggatgtcaaacctcataacgttatgatagaccatgaactgcggaagcttcgcttgatagattggggtcttgccgaattttaccacccagggaaggaatataatgttcgtgtggcttcaagatactttcaggggccctgaacttctagttgacttgcaagactatgactattctttggacatgtggagccttggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="83581" stop="78066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83286" g_stop="82985" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82984" i_stop="81809" i_length="1176">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81808" g_stop="81679" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="431" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81678" i_stop="81120" i_length="559">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.273" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81119" g_stop="80925" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="626" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80924" i_stop="79445" i_length="1480">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79444" g_stop="79287" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="784" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79286" i_stop="78441" i_length="846">
            <donor d_prob="0.568" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78440" g_stop="78366" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="785" r_stop="860" r_length="76" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E699179" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>860</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83286" e_stop="82985"/>
          <exon e_start="81808" e_stop="81679"/>
          <exon e_start="81119" e_stop="80925"/>
          <exon e_start="79444" e_stop="79287"/>
          <exon e_start="78440" e_stop="78366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATACAAGAGAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGGGTAAATATTTTCCCTTATTTAACCCTAATCGCTTTTGATTTTGTTTTTAGTTTTGGGGGTTTGTATACTGGATAATAGATTGAAATTCTTGAATTAGATGCTGTTTATTACCTTTTTTTAAAAAGATTGTTTGGTAAAATAATAACATCCACTTCTAGCATCCAAGAAAATAGTTTTTGCTTATGTTTCCTTGTTTTTTCCGTCTGAAGTAAAAAGTGGGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGGTATGTTTCCTTGTTTTTTTCGTCTGAAAGAAAAGTGGGTGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGTTATGTTTCCTTTTTTAAAGATAAGTGGAGGTTACATAGCATTGTAACATCCACTCCAGGGGTGGGTGAAACCTGAAAACAAATGTTGGGTTTCTTATTCCTATTTTTTGTCTAATAGATAATTGTGTGATCAGTGTTAGATGCTATTTTGGCGAATTCCTGCTATCTTGAATGGAATGACTTTCACATTGGAAAATACCTATTGGGTTAATGCAAAACTCCTGTCTAGTCTTGTTGAACTGAGTCTGTATTTTGTGGCTCCAGATTAGGTTGGGCTTCAAGTCTTTATATGTTTGTTACTTCTATATTAGCTTCCACATGATACAATGGAAGCTAAATAACAAATATAATATACCAATTAGTTGAGTTATATACCAATTTGTTGAGTTTAAGGATTGGTCCTGCTGGTGCACATTTGGACTGAAGTAAATGTTTGTGTAAGTCTTGTAATAAGAGTGAGATTTACAACCCGTTGTGTTAAAAGTTGAATTATTGAATACTTGAATGGAACAGCCCCGAAGTGGAGTGGATAATTATAGAGGCTTCATTTAGTTGACACCAGTTAGTTTATTTTTGTTATTGTATAGTTCTGCTGCATTTATCAAGATGAGAGCATTTTGTGTAACAAGAACTATATAAATGTCTTGCTAAAGTGGGAGAATATAGTTTGTTAATCTTGGTTCTAGAGTACCTTGACCCTTGGCTCAACGATTAGTTTTATCTTACACAAGTATTGGTTTCAGATATGATTCTATTTGACTTACTCAACTTTAATGCACCAGCTACATTGTATTATCCTCACTAGTGCATGTCATATTTATTATTGTAGTGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAGGTAAGATGATAAACACATCAGATGGCAGTCAATATGGCTTTTATGTATTCATGCTCCCTCTCCCCTGATTCTTTTTTTTTTTTTTAAGGAAGGTAACAGTTATATACTTCCTGTCCTCTTGGTCCTCCTTTTCTGTATCTTCTTTCTTCTCTCAGAACCAAGAATAGAGTTGTACTGATGTCTTAACTTACTATCTGGTCAAAACTTTGTTTGTCTCCAACATTTCCTTCTATTGCAGCTTTTCAAGGTTTGTATGAGTATGAGAATTTTGGGAGTCCCCAGTTTTCTTATGCTCAGCAACTATTTCTGAATTGAGTGGATATATTCTCATATACTATGATCAAATTATGAGATCAAACTATCAAAGTTATAACTCCTAGGCTCATCTCAAGTGGAAATTTTGGAATCCAAGATTCTGGTGCCATAAAACTGCACTAATTTGGATTCATCTTATATCTATATTTAGATAATTGGGAGTCTGTCGAATGTGTCTCGTGATCTTGGGTTAGTGGGAATGACTAAGACTGTAAACTCATATTTGTTCACCTTATCCTGCCTGCCAATACATGGATTTCAAATCCATCATCAAAAATGTAGATTTTTCTTATTGATATTGTCAGCTCATTCACTGTCTTGGTCATTCCAATTGATTACCTTTCCTCTGCAATTCGGTCTAAGTATAGCTTCTGAATGTGTTTTTTACAAGGTAAATGACCTCATAGTGAGGTGCTTACCATGTCTCTTGTTATCAGATGATATGAATTAGATTCACTGCATGCCTATTGGAAGTTGATTTTATATCTAGATTAATGGCTATGCTCGTTGTTACTCTTAACAATGTGACATTTTTTTTCTGACTTTGGATTTCTTAAGTAACTCTCTTGTATTCTTCTGATCTTATAATTGGTTAAGGAAAAAAAATTCACCAATGCCATGGATATTCTCTCCTCTGTTTGCTAATTGCTATTTAAATTTCATTTTCCTTTTTCACGAGTAATATTATATTCCCTTTTTGTCTGATTTGCGTGAGAGTAACTATTTGGAAATGGGGATGCTAATTATTGGATCCTGTTGATTTCTATCTCGAAGTTAGTTCTTCCTTTTTGCTACATGCCTACATCACCAGCCTACCTGATCATATGTCTAGGTTTCCTTTCTTTTGCCTCCTCCTGCGAAAAAAAGAAAAGAAATTTAACTTCTCAAGCTTTCTCATTGTGTATCAGCATAATTGTTTGTCAAATGCTAGATCTGTTCCTGCATACTTACTTTCCATTCGCTTAATTTACTCTATTAATTTCCCCTTCTTTTTTGAAAGAAAAGAAAGAATCACGTTTTTGGCATGACTGCTGAATTTGCTGAGGCCTTCATTTCTTGTGACAGTTGTTTAATAGACTCTTTGGGACCTATTCTTTGTGTACATTTCTTGACATGCTTACCAATTTATGGAGGTCGAAAACTGAAACTTCTTATCAACCTGCAGGCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAGGTGAGATAATCTGCCGACAGTATGGCTGGACCGGCATAGTTGCTTTGCCAGCAACAACTTCCTACATATAGCATTGCTATTTGTAGATCCATGCTCTACTTGCAAATTATTCTCTGGACAAGTCATGAGTTTTTAATCAGAAAGCAAGTGACATTGTTATATATTTTTTAAGTCAGAAATAATAAAAGGAACATCATTCACTTACATATACAACAACTACCCGTCAGTTCCAAACTAGTCGGGGTCGTTATATGATTTTTGCTGTCCATGTTACTCCATTTAATCCCATATCTTGCGGACTTGTAAAGTTTAGAATCTCTATATTTTCTTAACTGACAAACTTCTGAAAAGCTAAAACACTCCTAGAAAGTATAGGACCTACAGGAAAATTCTAATATATTAATATATTCTCGACTAATATGTAGCATATATATAGAATTTTTTCTTCCATTGTGCCTTTCGTAAGTTCACATGGATCCTTAAAATTATAGGTCCTTAAAGACAACTTCCTTCCATGTGATTTTAGGTCTACTTCGTTTTTTAACAGCTCCACTCACCATAGTTTCACACTCAGGAGTCAGTGCATCAGGAGGGGTTAATGCAAGACATAATCAAATCATCTCAAGGAACAGCTGAGTTCTTAAAGAATACTTAAAACAATACCCATTAAAGAATACTTAAAACAATCAATGGGATTATAGGAAAAGGTTAGGAATTGTTTATGTAAAACTAATTCTGTATCAGCATAGCTGCATATGGGAAATTGGTTTTGTACCGTAAGTTAGTGGTTCATAAACTATCAATGCTATTGAAGCAAGTCTGAGTTCTTCTTTTCTTGCACTTCAGATAC-TTCAAGGGCCCTGAACTTCTAGTTGACTTGCAAGACTATGACTATTCTTTGGACATGTGGAGCCTTGGCTG</genome_strand>
        <mrna_strand>CCTT-AAGAGAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTTCAGGGGCCCTGAACTTCTAGTTGACTTGCAAGACTATGACTATTCTTTGGACATGTGGAGCCTTGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E707551" ref_strand="+" ref_description="SGN-E707551 [FA33BD01]">
      <seq>cgatagagcaaaaagctttcccaatctatggctttttcctaaaaatggtgtgtgagtaaagtagtgttattgctctggcggttgcatcaaacagaagcggggcccaattccttcgttgcatctacccagcctgcgtcttctttgttgtcccttttccgaaatccgatacctttatcaataactcttcagtctctgatttccggataaaccatgtccaaagctcgagtatacaccgatatcaatgtgcttcgtcctagggaatattgggattacgaatcgctaactgttcaatggggtgatcaggatgactatgaggttgttcgaaaagttggaagaggaaaatacagtgaagtttttgaaggtataaatgttaacagcagggagaagtgcataatcaagatcctgaaacctgttaagaagaaaaagatcaaaagagagataaagatattgcaaaatctctgtggtggaccaaatattgtcaaactccttgatatcgtcagagatcagcattcaaaaactccaagcttgatttttgagtacgtgaacagcacagatttcaaggttttgtacccaacgctaacagactatgacatacggtactacatatatgagcttctcaaggcactagattattgccattcacagggaataatgcacagggatgtcaaacctcataacgttatgatagaccatgaactgcggaagcttcgcttgatagattggggtcttgccgaattttaccacccagggaaggaatataatgttcgtgtggcttcaagatacttcaagggccctgaacttctagttgacttgcaagactatgactattctttggacatgtggagccttggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="83579" stop="78066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83280" g_stop="82985" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82984" i_stop="81809" i_length="1176">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81808" g_stop="81679" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="426" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81678" i_stop="81120" i_length="559">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.273" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81119" g_stop="80925" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="621" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80924" i_stop="79445" i_length="1480">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79444" g_stop="79287" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="779" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79286" i_stop="78441" i_length="846">
            <donor d_prob="0.568" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78440" g_stop="78366" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="780" r_stop="854" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E707551" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83280" e_stop="82985"/>
          <exon e_start="81808" e_stop="81679"/>
          <exon e_start="81119" e_stop="80925"/>
          <exon e_start="79444" e_stop="79287"/>
          <exon e_start="78440" e_stop="78366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGGGTAAATATTTTCCCTTATTTAACCCTAATCGCTTTTGATTTTGTTTTTAGTTTTGGGGGTTTGTATACTGGATAATAGATTGAAATTCTTGAATTAGATGCTGTTTATTACCTTTTTTTAAAAAGATTGTTTGGTAAAATAATAACATCCACTTCTAGCATCCAAGAAAATAGTTTTTGCTTATGTTTCCTTGTTTTTTCCGTCTGAAGTAAAAAGTGGGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGGTATGTTTCCTTGTTTTTTTCGTCTGAAAGAAAAGTGGGTGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGTTATGTTTCCTTTTTTAAAGATAAGTGGAGGTTACATAGCATTGTAACATCCACTCCAGGGGTGGGTGAAACCTGAAAACAAATGTTGGGTTTCTTATTCCTATTTTTTGTCTAATAGATAATTGTGTGATCAGTGTTAGATGCTATTTTGGCGAATTCCTGCTATCTTGAATGGAATGACTTTCACATTGGAAAATACCTATTGGGTTAATGCAAAACTCCTGTCTAGTCTTGTTGAACTGAGTCTGTATTTTGTGGCTCCAGATTAGGTTGGGCTTCAAGTCTTTATATGTTTGTTACTTCTATATTAGCTTCCACATGATACAATGGAAGCTAAATAACAAATATAATATACCAATTAGTTGAGTTATATACCAATTTGTTGAGTTTAAGGATTGGTCCTGCTGGTGCACATTTGGACTGAAGTAAATGTTTGTGTAAGTCTTGTAATAAGAGTGAGATTTACAACCCGTTGTGTTAAAAGTTGAATTATTGAATACTTGAATGGAACAGCCCCGAAGTGGAGTGGATAATTATAGAGGCTTCATTTAGTTGACACCAGTTAGTTTATTTTTGTTATTGTATAGTTCTGCTGCATTTATCAAGATGAGAGCATTTTGTGTAACAAGAACTATATAAATGTCTTGCTAAAGTGGGAGAATATAGTTTGTTAATCTTGGTTCTAGAGTACCTTGACCCTTGGCTCAACGATTAGTTTTATCTTACACAAGTATTGGTTTCAGATATGATTCTATTTGACTTACTCAACTTTAATGCACCAGCTACATTGTATTATCCTCACTAGTGCATGTCATATTTATTATTGTAGTGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAGGTAAGATGATAAACACATCAGATGGCAGTCAATATGGCTTTTATGTATTCATGCTCCCTCTCCCCTGATTCTTTTTTTTTTTTTTAAGGAAGGTAACAGTTATATACTTCCTGTCCTCTTGGTCCTCCTTTTCTGTATCTTCTTTCTTCTCTCAGAACCAAGAATAGAGTTGTACTGATGTCTTAACTTACTATCTGGTCAAAACTTTGTTTGTCTCCAACATTTCCTTCTATTGCAGCTTTTCAAGGTTTGTATGAGTATGAGAATTTTGGGAGTCCCCAGTTTTCTTATGCTCAGCAACTATTTCTGAATTGAGTGGATATATTCTCATATACTATGATCAAATTATGAGATCAAACTATCAAAGTTATAACTCCTAGGCTCATCTCAAGTGGAAATTTTGGAATCCAAGATTCTGGTGCCATAAAACTGCACTAATTTGGATTCATCTTATATCTATATTTAGATAATTGGGAGTCTGTCGAATGTGTCTCGTGATCTTGGGTTAGTGGGAATGACTAAGACTGTAAACTCATATTTGTTCACCTTATCCTGCCTGCCAATACATGGATTTCAAATCCATCATCAAAAATGTAGATTTTTCTTATTGATATTGTCAGCTCATTCACTGTCTTGGTCATTCCAATTGATTACCTTTCCTCTGCAATTCGGTCTAAGTATAGCTTCTGAATGTGTTTTTTACAAGGTAAATGACCTCATAGTGAGGTGCTTACCATGTCTCTTGTTATCAGATGATATGAATTAGATTCACTGCATGCCTATTGGAAGTTGATTTTATATCTAGATTAATGGCTATGCTCGTTGTTACTCTTAACAATGTGACATTTTTTTTCTGACTTTGGATTTCTTAAGTAACTCTCTTGTATTCTTCTGATCTTATAATTGGTTAAGGAAAAAAAATTCACCAATGCCATGGATATTCTCTCCTCTGTTTGCTAATTGCTATTTAAATTTCATTTTCCTTTTTCACGAGTAATATTATATTCCCTTTTTGTCTGATTTGCGTGAGAGTAACTATTTGGAAATGGGGATGCTAATTATTGGATCCTGTTGATTTCTATCTCGAAGTTAGTTCTTCCTTTTTGCTACATGCCTACATCACCAGCCTACCTGATCATATGTCTAGGTTTCCTTTCTTTTGCCTCCTCCTGCGAAAAAAAGAAAAGAAATTTAACTTCTCAAGCTTTCTCATTGTGTATCAGCATAATTGTTTGTCAAATGCTAGATCTGTTCCTGCATACTTACTTTCCATTCGCTTAATTTACTCTATTAATTTCCCCTTCTTTTTTGAAAGAAAAGAAAGAATCACGTTTTTGGCATGACTGCTGAATTTGCTGAGGCCTTCATTTCTTGTGACAGTTGTTTAATAGACTCTTTGGGACCTATTCTTTGTGTACATTTCTTGACATGCTTACCAATTTATGGAGGTCGAAAACTGAAACTTCTTATCAACCTGCAGGCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAGGTGAGATAATCTGCCGACAGTATGGCTGGACCGGCATAGTTGCTTTGCCAGCAACAACTTCCTACATATAGCATTGCTATTTGTAGATCCATGCTCTACTTGCAAATTATTCTCTGGACAAGTCATGAGTTTTTAATCAGAAAGCAAGTGACATTGTTATATATTTTTTAAGTCAGAAATAATAAAAGGAACATCATTCACTTACATATACAACAACTACCCGTCAGTTCCAAACTAGTCGGGGTCGTTATATGATTTTTGCTGTCCATGTTACTCCATTTAATCCCATATCTTGCGGACTTGTAAAGTTTAGAATCTCTATATTTTCTTAACTGACAAACTTCTGAAAAGCTAAAACACTCCTAGAAAGTATAGGACCTACAGGAAAATTCTAATATATTAATATATTCTCGACTAATATGTAGCATATATATAGAATTTTTTCTTCCATTGTGCCTTTCGTAAGTTCACATGGATCCTTAAAATTATAGGTCCTTAAAGACAACTTCCTTCCATGTGATTTTAGGTCTACTTCGTTTTTTAACAGCTCCACTCACCATAGTTTCACACTCAGGAGTCAGTGCATCAGGAGGGGTTAATGCAAGACATAATCAAATCATCTCAAGGAACAGCTGAGTTCTTAAAGAATACTTAAAACAATACCCATTAAAGAATACTTAAAACAATCAATGGGATTATAGGAAAAGGTTAGGAATTGTTTATGTAAAACTAATTCTGTATCAGCATAGCTGCATATGGGAAATTGGTTTTGTACCGTAAGTTAGTGGTTCATAAACTATCAATGCTATTGAAGCAAGTCTGAGTTCTTCTTTTCTTGCACTTCAGATACTTCAAGGGCCCTGAACTTCTAGTTGACTTGCAAGACTATGACTATTCTTTGGACATGTGGAGCCTTGGCTG</genome_strand>
        <mrna_strand>CGATAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTCAAGGGCCCTGAACTTCTAGTTGACTTGCAAGACTATGACTATTCTTTGGACATGTGGAGCCTTGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E452419" ref_strand="+" ref_description="SGN-E452419 [cSTS-16-B22]">
      <seq>gtcaaacagaagctgggcccaattactcctccgcatctacccagcctgcgtcttctttgtgtccccttttccgaaatccgataccttaatcaacaactcttcagtctctgatttccgataaaaccatgtctaaagctcgagtatacaccgatatcaatgtgcttcgtcctagggaatattgggattacgaatcgctaactgttcaatggggtgatcaggatgactatgaggttgttcgaaaagttggaagaggaaaatacagtgaagtttttgaaggtataaatgttaacagcaacgagaagtgcataatcaagatcctgaaacctgttaagaagaaaaagatcaaaagagagataaagatattgcaaaacctctgtggtggaccaaacattgtcaaactccttgatatcgtcagagatcagcattcaaaaactccaagcttgatttttgagtacgtgaacagcacagatttcaaggttttgtacccaacgctaacagattacgacatacggtactacatatatgagcttctcaaggcactagattattgccattcacagggaataatgcatagggatgtcaagcctcataacgttatgatagatcatgaactgcggaagcttcgcttgatagattggggtcttgctgaattttaccacccagggaaggaatataatgttcgtgtggcttcaagatatttcaagggccctgaacttctagttgacttgcaagactacgactattctttggacatgtggagccttggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="83463" stop="78067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83195" g_stop="82985" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82984" i_stop="81809" i_length="1176">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81808" g_stop="81679" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="341" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81678" i_stop="81120" i_length="559">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.273" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81119" g_stop="80925" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="536" r_length="195" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80924" i_stop="79445" i_length="1480">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79444" g_stop="79287" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="694" r_length="158" r_score="0.975"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79286" i_stop="78441" i_length="846">
            <donor d_prob="0.568" d_score="0.98"/>
            <acceptor a_prob="0.911" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78440" g_stop="78367" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="695" r_stop="768" r_length="74" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E452419" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E452419" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83195" e_stop="82985"/>
          <exon e_start="81808" e_stop="81679"/>
          <exon e_start="81119" e_stop="80925"/>
          <exon e_start="79444" e_stop="79287"/>
          <exon e_start="78440" e_stop="78367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGGGTAAATATTTTCCCTTATTTAACCCTAATCGCTTTTGATTTTGTTTTTAGTTTTGGGGGTTTGTATACTGGATAATAGATTGAAATTCTTGAATTAGATGCTGTTTATTACCTTTTTTTAAAAAGATTGTTTGGTAAAATAATAACATCCACTTCTAGCATCCAAGAAAATAGTTTTTGCTTATGTTTCCTTGTTTTTTCCGTCTGAAGTAAAAAGTGGGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGGTATGTTTCCTTGTTTTTTTCGTCTGAAAGAAAAGTGGGTGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGTTATGTTTCCTTTTTTAAAGATAAGTGGAGGTTACATAGCATTGTAACATCCACTCCAGGGGTGGGTGAAACCTGAAAACAAATGTTGGGTTTCTTATTCCTATTTTTTGTCTAATAGATAATTGTGTGATCAGTGTTAGATGCTATTTTGGCGAATTCCTGCTATCTTGAATGGAATGACTTTCACATTGGAAAATACCTATTGGGTTAATGCAAAACTCCTGTCTAGTCTTGTTGAACTGAGTCTGTATTTTGTGGCTCCAGATTAGGTTGGGCTTCAAGTCTTTATATGTTTGTTACTTCTATATTAGCTTCCACATGATACAATGGAAGCTAAATAACAAATATAATATACCAATTAGTTGAGTTATATACCAATTTGTTGAGTTTAAGGATTGGTCCTGCTGGTGCACATTTGGACTGAAGTAAATGTTTGTGTAAGTCTTGTAATAAGAGTGAGATTTACAACCCGTTGTGTTAAAAGTTGAATTATTGAATACTTGAATGGAACAGCCCCGAAGTGGAGTGGATAATTATAGAGGCTTCATTTAGTTGACACCAGTTAGTTTATTTTTGTTATTGTATAGTTCTGCTGCATTTATCAAGATGAGAGCATTTTGTGTAACAAGAACTATATAAATGTCTTGCTAAAGTGGGAGAATATAGTTTGTTAATCTTGGTTCTAGAGTACCTTGACCCTTGGCTCAACGATTAGTTTTATCTTACACAAGTATTGGTTTCAGATATGATTCTATTTGACTTACTCAACTTTAATGCACCAGCTACATTGTATTATCCTCACTAGTGCATGTCATATTTATTATTGTAGTGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAGGTAAGATGATAAACACATCAGATGGCAGTCAATATGGCTTTTATGTATTCATGCTCCCTCTCCCCTGATTCTTTTTTTTTTTTTTAAGGAAGGTAACAGTTATATACTTCCTGTCCTCTTGGTCCTCCTTTTCTGTATCTTCTTTCTTCTCTCAGAACCAAGAATAGAGTTGTACTGATGTCTTAACTTACTATCTGGTCAAAACTTTGTTTGTCTCCAACATTTCCTTCTATTGCAGCTTTTCAAGGTTTGTATGAGTATGAGAATTTTGGGAGTCCCCAGTTTTCTTATGCTCAGCAACTATTTCTGAATTGAGTGGATATATTCTCATATACTATGATCAAATTATGAGATCAAACTATCAAAGTTATAACTCCTAGGCTCATCTCAAGTGGAAATTTTGGAATCCAAGATTCTGGTGCCATAAAACTGCACTAATTTGGATTCATCTTATATCTATATTTAGATAATTGGGAGTCTGTCGAATGTGTCTCGTGATCTTGGGTTAGTGGGAATGACTAAGACTGTAAACTCATATTTGTTCACCTTATCCTGCCTGCCAATACATGGATTTCAAATCCATCATCAAAAATGTAGATTTTTCTTATTGATATTGTCAGCTCATTCACTGTCTTGGTCATTCCAATTGATTACCTTTCCTCTGCAATTCGGTCTAAGTATAGCTTCTGAATGTGTTTTTTACAAGGTAAATGACCTCATAGTGAGGTGCTTACCATGTCTCTTGTTATCAGATGATATGAATTAGATTCACTGCATGCCTATTGGAAGTTGATTTTATATCTAGATTAATGGCTATGCTCGTTGTTACTCTTAACAATGTGACATTTTTTTTCTGACTTTGGATTTCTTAAGTAACTCTCTTGTATTCTTCTGATCTTATAATTGGTTAAGGAAAAAAAATTCACCAATGCCATGGATATTCTCTCCTCTGTTTGCTAATTGCTATTTAAATTTCATTTTCCTTTTTCACGAGTAATATTATATTCCCTTTTTGTCTGATTTGCGTGAGAGTAACTATTTGGAAATGGGGATGCTAATTATTGGATCCTGTTGATTTCTATCTCGAAGTTAGTTCTTCCTTTTTGCTACATGCCTACATCACCAGCCTACCTGATCATATGTCTAGGTTTCCTTTCTTTTGCCTCCTCCTGCGAAAAAAAGAAAAGAAATTTAACTTCTCAAGCTTTCTCATTGTGTATCAGCATAATTGTTTGTCAAATGCTAGATCTGTTCCTGCATACTTACTTTCCATTCGCTTAATTTACTCTATTAATTTCCCCTTCTTTTTTGAAAGAAAAGAAAGAATCACGTTTTTGGCATGACTGCTGAATTTGCTGAGGCCTTCATTTCTTGTGACAGTTGTTTAATAGACTCTTTGGGACCTATTCTTTGTGTACATTTCTTGACATGCTTACCAATTTATGGAGGTCGAAAACTGAAACTTCTTATCAACCTGCAGGCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAGGTGAGATAATCTGCCGACAGTATGGCTGGACCGGCATAGTTGCTTTGCCAGCAACAACTTCCTACATATAGCATTGCTATTTGTAGATCCATGCTCTACTTGCAAATTATTCTCTGGACAAGTCATGAGTTTTTAATCAGAAAGCAAGTGACATTGTTATATATTTTTTAAGTCAGAAATAATAAAAGGAACATCATTCACTTACATATACAACAACTACCCGTCAGTTCCAAACTAGTCGGGGTCGTTATATGATTTTTGCTGTCCATGTTACTCCATTTAATCCCATATCTTGCGGACTTGTAAAGTTTAGAATCTCTATATTTTCTTAACTGACAAACTTCTGAAAAGCTAAAACACTCCTAGAAAGTATAGGACCTACAGGAAAATTCTAATATATTAATATATTCTCGACTAATATGTAGCATATATATAGAATTTTTTCTTCCATTGTGCCTTTCGTAAGTTCACATGGATCCTTAAAATTATAGGTCCTTAAAGACAACTTCCTTCCATGTGATTTTAGGTCTACTTCGTTTTTTAACAGCTCCACTCACCATAGTTTCACACTCAGGAGTCAGTGCATCAGGAGGGGTTAATGCAAGACATAATCAAATCATCTCAAGGAACAGCTGAGTTCTTAAAGAATACTTAAAACAATACCCATTAAAGAATACTTAAAACAATCAATGGGATTATAGGAAAAGGTTAGGAATTGTTTATGTAAAACTAATTCTGTATCAGCATAGCTGCATATGGGAAATTGGTTTTGTACCGTAAGTTAGTGGTTCATAAACTATCAATGCTATTGAAGCAAGTCTGAGTTCTTCTTTTCTTGCACTTCAGATACTTCAAGGGCCCTGAACTTCTAGTTGACTTGCAAGACTATGACTATTCTTTGGACATGTGGAGCCTTGGCT</genome_strand>
        <mrna_strand>GTCAAACAGAAGCTGGGCCCAATTACTCCTCCGCATCTACCCAGCCTGCGTCTTCTTTGTGTCCCCTTTTCCGAAATCCGATACCTTAATCAACAACTCTTCAGTCTCTGATTTCCGATAAAACCATGTCTAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAACGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGAGAGATAAAGATATTGCAAAACCTCTGTGGTGGACCAAACATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGATTACGACATACGGTACTACATATATGAGCTTCTCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTAGATTATTGCCATTCACAGGGAATAATGCATAGGGATGTCAAGCCTCATAACGTTATGATAGATCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCTGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTTCAAGGGCCCTGAACTTCTAGTTGACTTGCAAGACTACGACTATTCTTTGGACATGTGGAGCCTTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E252366" ref_strand="+" ref_description="SGN-E252366 [cLEG-12-K23]">
      <seq>gtttttgaaagtataaatgttaacagcaaggagaagtgcataatcaagatcctgaaacctgttaagaagaaaaagatcaaaagagagataaagatattgcaaaatctctgtggtggaccaaatattgtcaaactccttgatatcgtcagagatcagcattcaaaaactccaagcttgatttttgagtacgtgaacagcacagatttcaaggttttgtacccaacgctaacagactatgacatacggtactacatatatgagcttctcaaggcactagattattgccattcacagggaataatgcacagggatgtcaaacctcataacgttatgatagaccatgaactgcggaagcttcgcttgatagattggggtcttgccgaattttaccacccagggaaggaatataatgttcgtgtggcttcaagatacttcaagggccctgaacttctagttgacttgcaagactatgactattctttggacatgtggagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="82053" stop="78073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81753" g_stop="81679" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81678" i_stop="81120" i_length="559">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.273" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81119" g_stop="80925" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="270" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80924" i_stop="79445" i_length="1480">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79444" g_stop="79287" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="428" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79286" i_stop="78441" i_length="846">
            <donor d_prob="0.568" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78440" g_stop="78373" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="496" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E252366" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81753" e_stop="81679"/>
          <exon e_start="81119" e_stop="80925"/>
          <exon e_start="79444" e_stop="79287"/>
          <exon e_start="78440" e_stop="78373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAGGTAAGATGATAAACACATCAGATGGCAGTCAATATGGCTTTTATGTATTCATGCTCCCTCTCCCCTGATTCTTTTTTTTTTTTTTAAGGAAGGTAACAGTTATATACTTCCTGTCCTCTTGGTCCTCCTTTTCTGTATCTTCTTTCTTCTCTCAGAACCAAGAATAGAGTTGTACTGATGTCTTAACTTACTATCTGGTCAAAACTTTGTTTGTCTCCAACATTTCCTTCTATTGCAGCTTTTCAAGGTTTGTATGAGTATGAGAATTTTGGGAGTCCCCAGTTTTCTTATGCTCAGCAACTATTTCTGAATTGAGTGGATATATTCTCATATACTATGATCAAATTATGAGATCAAACTATCAAAGTTATAACTCCTAGGCTCATCTCAAGTGGAAATTTTGGAATCCAAGATTCTGGTGCCATAAAACTGCACTAATTTGGATTCATCTTATATCTATATTTAGATAATTGGGAGTCTGTCGAATGTGTCTCGTGATCTTGGGTTAGTGGGAATGACTAAGACTGTAAACTCATATTTGTTCACCTTATCCTGCCTGCCAATACATGGATTTCAAATCCATCATCAAAAATGTAGATTTTTCTTATTGATATTGTCAGCTCATTCACTGTCTTGGTCATTCCAATTGATTACCTTTCCTCTGCAATTCGGTCTAAGTATAGCTTCTGAATGTGTTTTTTACAAGGTAAATGACCTCATAGTGAGGTGCTTACCATGTCTCTTGTTATCAGATGATATGAATTAGATTCACTGCATGCCTATTGGAAGTTGATTTTATATCTAGATTAATGGCTATGCTCGTTGTTACTCTTAACAATGTGACATTTTTTTTCTGACTTTGGATTTCTTAAGTAACTCTCTTGTATTCTTCTGATCTTATAATTGGTTAAGGAAAAAAAATTCACCAATGCCATGGATATTCTCTCCTCTGTTTGCTAATTGCTATTTAAATTTCATTTTCCTTTTTCACGAGTAATATTATATTCCCTTTTTGTCTGATTTGCGTGAGAGTAACTATTTGGAAATGGGGATGCTAATTATTGGATCCTGTTGATTTCTATCTCGAAGTTAGTTCTTCCTTTTTGCTACATGCCTACATCACCAGCCTACCTGATCATATGTCTAGGTTTCCTTTCTTTTGCCTCCTCCTGCGAAAAAAAGAAAAGAAATTTAACTTCTCAAGCTTTCTCATTGTGTATCAGCATAATTGTTTGTCAAATGCTAGATCTGTTCCTGCATACTTACTTTCCATTCGCTTAATTTACTCTATTAATTTCCCCTTCTTTTTTGAAAGAAAAGAAAGAATCACGTTTTTGGCATGACTGCTGAATTTGCTGAGGCCTTCATTTCTTGTGACAGTTGTTTAATAGACTCTTTGGGACCTATTCTTTGTGTACATTTCTTGACATGCTTACCAATTTATGGAGGTCGAAAACTGAAACTTCTTATCAACCTGCAGGCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAGGTGAGATAATCTGCCGACAGTATGGCTGGACCGGCATAGTTGCTTTGCCAGCAACAACTTCCTACATATAGCATTGCTATTTGTAGATCCATGCTCTACTTGCAAATTATTCTCTGGACAAGTCATGAGTTTTTAATCAGAAAGCAAGTGACATTGTTATATATTTTTTAAGTCAGAAATAATAAAAGGAACATCATTCACTTACATATACAACAACTACCCGTCAGTTCCAAACTAGTCGGGGTCGTTATATGATTTTTGCTGTCCATGTTACTCCATTTAATCCCATATCTTGCGGACTTGTAAAGTTTAGAATCTCTATATTTTCTTAACTGACAAACTTCTGAAAAGCTAAAACACTCCTAGAAAGTATAGGACCTACAGGAAAATTCTAATATATTAATATATTCTCGACTAATATGTAGCATATATATAGAATTTTTTCTTCCATTGTGCCTTTCGTAAGTTCACATGGATCCTTAAAATTATAGGTCCTTAAAGACAACTTCCTTCCATGTGATTTTAGGTCTACTTCGTTTTTTAACAGCTCCACTCACCATAGTTTCACACTCAGGAGTCAGTGCATCAGGAGGGGTTAATGCAAGACATAATCAAATCATCTCAAGGAACAGCTGAGTTCTTAAAGAATACTTAAAACAATACCCATTAAAGAATACTTAAAACAATCAATGGGATTATAGGAAAAGGTTAGGAATTGTTTATGTAAAACTAATTCTGTATCAGCATAGCTGCATATGGGAAATTGGTTTTGTACCGTAAGTTAGTGGTTCATAAACTATCAATGCTATTGAAGCAAGTCTGAGTTCTTCTTTTCTTGCACTTCAGATACTTCAAGGGCCCTGAACTTCTAGTTGACTTGCAAGACTATGACTATTCTTTGGACATGTGGAGCC</genome_strand>
        <mrna_strand>GTTTTTGAAAGTATAAATGTTAACAGCAAGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTCAAGGGCCCTGAACTTCTAGTTGACTTGCAAGACTATGACTATTCTTTGGACATGTGGAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E709296" ref_strand="+" ref_description="SGN-E709296 [FA51BB11]">
      <seq>cgctaaagagaccaaaaagctttcccaatctatggctttttccttaaaatggtgtgtgagtaaagtagtgttattgctctggcggttgcatcaaacagaagcggggcccaattccttcgttgcatctacccagcctgcgtcttctttgttgtcccttttccgaaatccgatacctttatcaataactcttcagtctctgatttccggataaaccatgtccaaagctcgagtatacaccgatatcaatgtgcttcgtcctagggaatattgggattacgaatcgctaactgttcaatggggtgatcaggatgactatgaggttgttcgaaaagttggaagaggaaaatacagtgaagtttttgaaggtataaatgttaacagcagggagaagtgcataatcaagatcctgaaacctgttaagaagaaaaagatcaaaagagagataaagatattgcaaaatctctgtggtggaccaaatattgtcaaactccttgatatcgtcagagatcagcattcaaaaactccaagcttgatttttgagtacgtgaacagcacagatttcaaggttttgtacccaacgctaacagactatgacatacggtactacatatatgagcttctcaaggcactagattattgccattcacagggaataatgcacagggatgtcaaacctcataacgttatgatagaccatgaactgcggaagcttcgcttgatagattggggtcttgccgaattttaccacccagggaaggaatataatgttcgtgtggcttcaagatacttcaggggcccctgaacttctagttgacttgcaagactatgactattcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="83581" stop="78087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83284" g_stop="82985" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82984" i_stop="81809" i_length="1176">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81808" g_stop="81679" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="430" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81678" i_stop="81120" i_length="559">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.273" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81119" g_stop="80925" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="625" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80924" i_stop="79445" i_length="1480">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79444" g_stop="79287" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="783" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79286" i_stop="78441" i_length="846">
            <donor d_prob="0.568" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78440" g_stop="78387" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="784" r_stop="838" r_length="55" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E709296" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>837</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83284" e_stop="82985"/>
          <exon e_start="81808" e_stop="81679"/>
          <exon e_start="81119" e_stop="80925"/>
          <exon e_start="79444" e_stop="79287"/>
          <exon e_start="78440" e_stop="78387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAAGAGAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGGGTAAATATTTTCCCTTATTTAACCCTAATCGCTTTTGATTTTGTTTTTAGTTTTGGGGGTTTGTATACTGGATAATAGATTGAAATTCTTGAATTAGATGCTGTTTATTACCTTTTTTTAAAAAGATTGTTTGGTAAAATAATAACATCCACTTCTAGCATCCAAGAAAATAGTTTTTGCTTATGTTTCCTTGTTTTTTCCGTCTGAAGTAAAAAGTGGGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGGTATGTTTCCTTGTTTTTTTCGTCTGAAAGAAAAGTGGGTGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGTTATGTTTCCTTTTTTAAAGATAAGTGGAGGTTACATAGCATTGTAACATCCACTCCAGGGGTGGGTGAAACCTGAAAACAAATGTTGGGTTTCTTATTCCTATTTTTTGTCTAATAGATAATTGTGTGATCAGTGTTAGATGCTATTTTGGCGAATTCCTGCTATCTTGAATGGAATGACTTTCACATTGGAAAATACCTATTGGGTTAATGCAAAACTCCTGTCTAGTCTTGTTGAACTGAGTCTGTATTTTGTGGCTCCAGATTAGGTTGGGCTTCAAGTCTTTATATGTTTGTTACTTCTATATTAGCTTCCACATGATACAATGGAAGCTAAATAACAAATATAATATACCAATTAGTTGAGTTATATACCAATTTGTTGAGTTTAAGGATTGGTCCTGCTGGTGCACATTTGGACTGAAGTAAATGTTTGTGTAAGTCTTGTAATAAGAGTGAGATTTACAACCCGTTGTGTTAAAAGTTGAATTATTGAATACTTGAATGGAACAGCCCCGAAGTGGAGTGGATAATTATAGAGGCTTCATTTAGTTGACACCAGTTAGTTTATTTTTGTTATTGTATAGTTCTGCTGCATTTATCAAGATGAGAGCATTTTGTGTAACAAGAACTATATAAATGTCTTGCTAAAGTGGGAGAATATAGTTTGTTAATCTTGGTTCTAGAGTACCTTGACCCTTGGCTCAACGATTAGTTTTATCTTACACAAGTATTGGTTTCAGATATGATTCTATTTGACTTACTCAACTTTAATGCACCAGCTACATTGTATTATCCTCACTAGTGCATGTCATATTTATTATTGTAGTGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAGGTAAGATGATAAACACATCAGATGGCAGTCAATATGGCTTTTATGTATTCATGCTCCCTCTCCCCTGATTCTTTTTTTTTTTTTTAAGGAAGGTAACAGTTATATACTTCCTGTCCTCTTGGTCCTCCTTTTCTGTATCTTCTTTCTTCTCTCAGAACCAAGAATAGAGTTGTACTGATGTCTTAACTTACTATCTGGTCAAAACTTTGTTTGTCTCCAACATTTCCTTCTATTGCAGCTTTTCAAGGTTTGTATGAGTATGAGAATTTTGGGAGTCCCCAGTTTTCTTATGCTCAGCAACTATTTCTGAATTGAGTGGATATATTCTCATATACTATGATCAAATTATGAGATCAAACTATCAAAGTTATAACTCCTAGGCTCATCTCAAGTGGAAATTTTGGAATCCAAGATTCTGGTGCCATAAAACTGCACTAATTTGGATTCATCTTATATCTATATTTAGATAATTGGGAGTCTGTCGAATGTGTCTCGTGATCTTGGGTTAGTGGGAATGACTAAGACTGTAAACTCATATTTGTTCACCTTATCCTGCCTGCCAATACATGGATTTCAAATCCATCATCAAAAATGTAGATTTTTCTTATTGATATTGTCAGCTCATTCACTGTCTTGGTCATTCCAATTGATTACCTTTCCTCTGCAATTCGGTCTAAGTATAGCTTCTGAATGTGTTTTTTACAAGGTAAATGACCTCATAGTGAGGTGCTTACCATGTCTCTTGTTATCAGATGATATGAATTAGATTCACTGCATGCCTATTGGAAGTTGATTTTATATCTAGATTAATGGCTATGCTCGTTGTTACTCTTAACAATGTGACATTTTTTTTCTGACTTTGGATTTCTTAAGTAACTCTCTTGTATTCTTCTGATCTTATAATTGGTTAAGGAAAAAAAATTCACCAATGCCATGGATATTCTCTCCTCTGTTTGCTAATTGCTATTTAAATTTCATTTTCCTTTTTCACGAGTAATATTATATTCCCTTTTTGTCTGATTTGCGTGAGAGTAACTATTTGGAAATGGGGATGCTAATTATTGGATCCTGTTGATTTCTATCTCGAAGTTAGTTCTTCCTTTTTGCTACATGCCTACATCACCAGCCTACCTGATCATATGTCTAGGTTTCCTTTCTTTTGCCTCCTCCTGCGAAAAAAAGAAAAGAAATTTAACTTCTCAAGCTTTCTCATTGTGTATCAGCATAATTGTTTGTCAAATGCTAGATCTGTTCCTGCATACTTACTTTCCATTCGCTTAATTTACTCTATTAATTTCCCCTTCTTTTTTGAAAGAAAAGAAAGAATCACGTTTTTGGCATGACTGCTGAATTTGCTGAGGCCTTCATTTCTTGTGACAGTTGTTTAATAGACTCTTTGGGACCTATTCTTTGTGTACATTTCTTGACATGCTTACCAATTTATGGAGGTCGAAAACTGAAACTTCTTATCAACCTGCAGGCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAGGTGAGATAATCTGCCGACAGTATGGCTGGACCGGCATAGTTGCTTTGCCAGCAACAACTTCCTACATATAGCATTGCTATTTGTAGATCCATGCTCTACTTGCAAATTATTCTCTGGACAAGTCATGAGTTTTTAATCAGAAAGCAAGTGACATTGTTATATATTTTTTAAGTCAGAAATAATAAAAGGAACATCATTCACTTACATATACAACAACTACCCGTCAGTTCCAAACTAGTCGGGGTCGTTATATGATTTTTGCTGTCCATGTTACTCCATTTAATCCCATATCTTGCGGACTTGTAAAGTTTAGAATCTCTATATTTTCTTAACTGACAAACTTCTGAAAAGCTAAAACACTCCTAGAAAGTATAGGACCTACAGGAAAATTCTAATATATTAATATATTCTCGACTAATATGTAGCATATATATAGAATTTTTTCTTCCATTGTGCCTTTCGTAAGTTCACATGGATCCTTAAAATTATAGGTCCTTAAAGACAACTTCCTTCCATGTGATTTTAGGTCTACTTCGTTTTTTAACAGCTCCACTCACCATAGTTTCACACTCAGGAGTCAGTGCATCAGGAGGGGTTAATGCAAGACATAATCAAATCATCTCAAGGAACAGCTGAGTTCTTAAAGAATACTTAAAACAATACCCATTAAAGAATACTTAAAACAATCAATGGGATTATAGGAAAAGGTTAGGAATTGTTTATGTAAAACTAATTCTGTATCAGCATAGCTGCATATGGGAAATTGGTTTTGTACCGTAAGTTAGTGGTTCATAAACTATCAATGCTATTGAAGCAAGTCTGAGTTCTTCTTTTCTTGCACTTCAGATACTTCAAGGG-CCCTGAACTTCTAGTTGACTTGCAAGACTATGACTATTCTTT</genome_strand>
        <mrna_strand>CGCTAAAGAGACCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTTAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTCAGGGGCCCCTGAACTTCTAGTTGACTTGCAAGACTATGACTATTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E555395" ref_strand="+" ref_description="SGN-E555395 [cTSC-2-M1]">
      <seq>caagagagagcaaaaagctttcccaatctatggctttttcctaaaaatggtgtgtgagtaaagtagtgttattgctctggcggttgcatcaaacagaagcggggcccaattccttcgttgcatctacccagcctgcgtcttctttgttgtcccttttccgaaatccgatacctttatcaataactcttcagtctctgatttccggataaaccatgtccaaagctcgagtatacaccgatatcaatgtgcttcgtcctagggaatattgggattacgaatcgctaactgttcaatggggtgatcaggatgactatgaggttgttcgaaaagttggaagaggaaaatacagtgaagtttttgaaggtataaatgttaacagcagggagaagtgcataatcaagatcctgaaacctgttaagaagaaaaagatcaaaagagagataaagatattgcaaaatctctgtggtggaccaaatattgtcaaactccttgatatcgtcagagatcagcattcaaaaactccaagcttgatttttgagtacgtgaacagcacagatttcaaggttttgtacccaacgctaacagactatgacatacggtactacatatatgagcttctcaaggcactagattattgccattcacagggaataatgcacagggatgtcaaacctcataacgttatgatagaccatgaactgcggaagcttcgcttgatagattgnggtcttgccgaattttaccacccaaggaaggaatataatgttcgtgtggcttcaagatacttcaagggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="83582" stop="78126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83282" g_stop="82985" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82984" i_stop="81809" i_length="1176">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81808" g_stop="81679" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="428" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81678" i_stop="81120" i_length="559">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.273" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81119" g_stop="80925" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="623" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80924" i_stop="79445" i_length="1480">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79444" g_stop="79287" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="781" r_length="158" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79286" i_stop="78441" i_length="846">
            <donor d_prob="0.568" d_score="0.98"/>
            <acceptor a_prob="0.911" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78440" g_stop="78426" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="782" r_stop="796" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E555395" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555395" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83282" e_stop="82985"/>
          <exon e_start="81808" e_stop="81679"/>
          <exon e_start="81119" e_stop="80925"/>
          <exon e_start="79444" e_stop="79287"/>
          <exon e_start="78440" e_stop="78426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAGAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGGGTAAATATTTTCCCTTATTTAACCCTAATCGCTTTTGATTTTGTTTTTAGTTTTGGGGGTTTGTATACTGGATAATAGATTGAAATTCTTGAATTAGATGCTGTTTATTACCTTTTTTTAAAAAGATTGTTTGGTAAAATAATAACATCCACTTCTAGCATCCAAGAAAATAGTTTTTGCTTATGTTTCCTTGTTTTTTCCGTCTGAAGTAAAAAGTGGGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGGTATGTTTCCTTGTTTTTTTCGTCTGAAAGAAAAGTGGGTGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGTTATGTTTCCTTTTTTAAAGATAAGTGGAGGTTACATAGCATTGTAACATCCACTCCAGGGGTGGGTGAAACCTGAAAACAAATGTTGGGTTTCTTATTCCTATTTTTTGTCTAATAGATAATTGTGTGATCAGTGTTAGATGCTATTTTGGCGAATTCCTGCTATCTTGAATGGAATGACTTTCACATTGGAAAATACCTATTGGGTTAATGCAAAACTCCTGTCTAGTCTTGTTGAACTGAGTCTGTATTTTGTGGCTCCAGATTAGGTTGGGCTTCAAGTCTTTATATGTTTGTTACTTCTATATTAGCTTCCACATGATACAATGGAAGCTAAATAACAAATATAATATACCAATTAGTTGAGTTATATACCAATTTGTTGAGTTTAAGGATTGGTCCTGCTGGTGCACATTTGGACTGAAGTAAATGTTTGTGTAAGTCTTGTAATAAGAGTGAGATTTACAACCCGTTGTGTTAAAAGTTGAATTATTGAATACTTGAATGGAACAGCCCCGAAGTGGAGTGGATAATTATAGAGGCTTCATTTAGTTGACACCAGTTAGTTTATTTTTGTTATTGTATAGTTCTGCTGCATTTATCAAGATGAGAGCATTTTGTGTAACAAGAACTATATAAATGTCTTGCTAAAGTGGGAGAATATAGTTTGTTAATCTTGGTTCTAGAGTACCTTGACCCTTGGCTCAACGATTAGTTTTATCTTACACAAGTATTGGTTTCAGATATGATTCTATTTGACTTACTCAACTTTAATGCACCAGCTACATTGTATTATCCTCACTAGTGCATGTCATATTTATTATTGTAGTGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAGGTAAGATGATAAACACATCAGATGGCAGTCAATATGGCTTTTATGTATTCATGCTCCCTCTCCCCTGATTCTTTTTTTTTTTTTTAAGGAAGGTAACAGTTATATACTTCCTGTCCTCTTGGTCCTCCTTTTCTGTATCTTCTTTCTTCTCTCAGAACCAAGAATAGAGTTGTACTGATGTCTTAACTTACTATCTGGTCAAAACTTTGTTTGTCTCCAACATTTCCTTCTATTGCAGCTTTTCAAGGTTTGTATGAGTATGAGAATTTTGGGAGTCCCCAGTTTTCTTATGCTCAGCAACTATTTCTGAATTGAGTGGATATATTCTCATATACTATGATCAAATTATGAGATCAAACTATCAAAGTTATAACTCCTAGGCTCATCTCAAGTGGAAATTTTGGAATCCAAGATTCTGGTGCCATAAAACTGCACTAATTTGGATTCATCTTATATCTATATTTAGATAATTGGGAGTCTGTCGAATGTGTCTCGTGATCTTGGGTTAGTGGGAATGACTAAGACTGTAAACTCATATTTGTTCACCTTATCCTGCCTGCCAATACATGGATTTCAAATCCATCATCAAAAATGTAGATTTTTCTTATTGATATTGTCAGCTCATTCACTGTCTTGGTCATTCCAATTGATTACCTTTCCTCTGCAATTCGGTCTAAGTATAGCTTCTGAATGTGTTTTTTACAAGGTAAATGACCTCATAGTGAGGTGCTTACCATGTCTCTTGTTATCAGATGATATGAATTAGATTCACTGCATGCCTATTGGAAGTTGATTTTATATCTAGATTAATGGCTATGCTCGTTGTTACTCTTAACAATGTGACATTTTTTTTCTGACTTTGGATTTCTTAAGTAACTCTCTTGTATTCTTCTGATCTTATAATTGGTTAAGGAAAAAAAATTCACCAATGCCATGGATATTCTCTCCTCTGTTTGCTAATTGCTATTTAAATTTCATTTTCCTTTTTCACGAGTAATATTATATTCCCTTTTTGTCTGATTTGCGTGAGAGTAACTATTTGGAAATGGGGATGCTAATTATTGGATCCTGTTGATTTCTATCTCGAAGTTAGTTCTTCCTTTTTGCTACATGCCTACATCACCAGCCTACCTGATCATATGTCTAGGTTTCCTTTCTTTTGCCTCCTCCTGCGAAAAAAAGAAAAGAAATTTAACTTCTCAAGCTTTCTCATTGTGTATCAGCATAATTGTTTGTCAAATGCTAGATCTGTTCCTGCATACTTACTTTCCATTCGCTTAATTTACTCTATTAATTTCCCCTTCTTTTTTGAAAGAAAAGAAAGAATCACGTTTTTGGCATGACTGCTGAATTTGCTGAGGCCTTCATTTCTTGTGACAGTTGTTTAATAGACTCTTTGGGACCTATTCTTTGTGTACATTTCTTGACATGCTTACCAATTTATGGAGGTCGAAAACTGAAACTTCTTATCAACCTGCAGGCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAGGTGAGATAATCTGCCGACAGTATGGCTGGACCGGCATAGTTGCTTTGCCAGCAACAACTTCCTACATATAGCATTGCTATTTGTAGATCCATGCTCTACTTGCAAATTATTCTCTGGACAAGTCATGAGTTTTTAATCAGAAAGCAAGTGACATTGTTATATATTTTTTAAGTCAGAAATAATAAAAGGAACATCATTCACTTACATATACAACAACTACCCGTCAGTTCCAAACTAGTCGGGGTCGTTATATGATTTTTGCTGTCCATGTTACTCCATTTAATCCCATATCTTGCGGACTTGTAAAGTTTAGAATCTCTATATTTTCTTAACTGACAAACTTCTGAAAAGCTAAAACACTCCTAGAAAGTATAGGACCTACAGGAAAATTCTAATATATTAATATATTCTCGACTAATATGTAGCATATATATAGAATTTTTTCTTCCATTGTGCCTTTCGTAAGTTCACATGGATCCTTAAAATTATAGGTCCTTAAAGACAACTTCCTTCCATGTGATTTTAGGTCTACTTCGTTTTTTAACAGCTCCACTCACCATAGTTTCACACTCAGGAGTCAGTGCATCAGGAGGGGTTAATGCAAGACATAATCAAATCATCTCAAGGAACAGCTGAGTTCTTAAAGAATACTTAAAACAATACCCATTAAAGAATACTTAAAACAATCAATGGGATTATAGGAAAAGGTTAGGAATTGTTTATGTAAAACTAATTCTGTATCAGCATAGCTGCATATGGGAAATTGGTTTTGTACCGTAAGTTAGTGGTTCATAAACTATCAATGCTATTGAAGCAAGTCTGAGTTCTTCTTTTCTTGCACTTCAGATACTTCAAGGGCCC</genome_strand>
        <mrna_strand>CAAGAGAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGNGGTCTTGCCGAATTTTACCACCCAAGGAAGGAATATAATGTTCGTGTGGCTTCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTCAAGGGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E604902" ref_strand="-" ref_description="SGN-E604902 [56919]">
      <seq>tttagtttgtaatattgtgctttctattggaaaaaaaaacaaaaagaatatgcatgcttttgacttgatattagtggtgttgtgtagatcaaaagagagataaagatattgcaaaacctctgtggtggaccaaacattgtcaaactccttgatatcgtcagagatcagcattcaaaaactccaagcttgatttttgagtacgtgaacagcacagatttcaaggttttgtacccaacgctaacagattacgacatacggtactacatatatgagcttctcaaggcactagattattgccattcacagggaataatgcatagggatgtcaagcctcataacgttatgatagatcatgaactgcggaagcttcgcttgatagattggggtcttgctgaattttaccacccagggaaggaatataatgttcgtgtggcttcaagatatttcaagggcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="81473" stop="78978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81202" g_stop="80925" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80924" i_stop="79445" i_length="1480">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79444" g_stop="79287" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="440" r_length="158" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E604902" ref_strand="-">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E604902" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="81202" e_stop="80925"/>
          <exon e_start="79444" e_stop="79287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGTTTGTAATATTGTGCTTTATA-CGG-A-AAAAAA-GAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAGGTAAGATGATAAACACATCAGATGGCAGTCAATATGGCTTTTATGTATTCATGCTCCCTCTCCCCTGATTCTTTTTTTTTTTTTTAAGGAAGGTAACAGTTATATACTTCCTGTCCTCTTGGTCCTCCTTTTCTGTATCTTCTTTCTTCTCTCAGAACCAAGAATAGAGTTGTACTGATGTCTTAACTTACTATCTGGTCAAAACTTTGTTTGTCTCCAACATTTCCTTCTATTGCAGCTTTTCAAGGTTTGTATGAGTATGAGAATTTTGGGAGTCCCCAGTTTTCTTATGCTCAGCAACTATTTCTGAATTGAGTGGATATATTCTCATATACTATGATCAAATTATGAGATCAAACTATCAAAGTTATAACTCCTAGGCTCATCTCAAGTGGAAATTTTGGAATCCAAGATTCTGGTGCCATAAAACTGCACTAATTTGGATTCATCTTATATCTATATTTAGATAATTGGGAGTCTGTCGAATGTGTCTCGTGATCTTGGGTTAGTGGGAATGACTAAGACTGTAAACTCATATTTGTTCACCTTATCCTGCCTGCCAATACATGGATTTCAAATCCATCATCAAAAATGTAGATTTTTCTTATTGATATTGTCAGCTCATTCACTGTCTTGGTCATTCCAATTGATTACCTTTCCTCTGCAATTCGGTCTAAGTATAGCTTCTGAATGTGTTTTTTACAAGGTAAATGACCTCATAGTGAGGTGCTTACCATGTCTCTTGTTATCAGATGATATGAATTAGATTCACTGCATGCCTATTGGAAGTTGATTTTATATCTAGATTAATGGCTATGCTCGTTGTTACTCTTAACAATGTGACATTTTTTTTCTGACTTTGGATTTCTTAAGTAACTCTCTTGTATTCTTCTGATCTTATAATTGGTTAAGGAAAAAAAATTCACCAATGCCATGGATATTCTCTCCTCTGTTTGCTAATTGCTATTTAAATTTCATTTTCCTTTTTCACGAGTAATATTATATTCCCTTTTTGTCTGATTTGCGTGAGAGTAACTATTTGGAAATGGGGATGCTAATTATTGGATCCTGTTGATTTCTATCTCGAAGTTAGTTCTTCCTTTTTGCTACATGCCTACATCACCAGCCTACCTGATCATATGTCTAGGTTTCCTTTCTTTTGCCTCCTCCTGCGAAAAAAAGAAAAGAAATTTAACTTCTCAAGCTTTCTCATTGTGTATCAGCATAATTGTTTGTCAAATGCTAGATCTGTTCCTGCATACTTACTTTCCATTCGCTTAATTTACTCTATTAATTTCCCCTTCTTTTTTGAAAGAAAAGAAAGAATCACGTTTTTGGCATGACTGCTGAATTTGCTGAGGCCTTCATTTCTTGTGACAGTTGTTTAATAGACTCTTTGGGACCTATTCTTTGTGTACATTTCTTGACATGCTTACCAATTTATGGAGGTCGAAAACTGAAACTTCTTATCAACCTGCAGGCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAG</genome_strand>
        <mrna_strand>TTTAGTTTGTAATATTGTGCTTTCTATTGGAAAAAAAAACAAAAAGAATATGCATGCTTTTGACTTGATATTAGTGGTGTTGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAACCTCTGTGGTGGACCAAACATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGATTACGACATACGGTACTACATATATGAGCTTCTCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTAGATTATTGCCATTCACAGGGAATAATGCATAGGGATGTCAAGCCTCATAACGTTATGATAGATCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCTGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E395258" ref_strand="+" ref_description="SGN-E395258 [TUS-46-G12]">
      <seq>gtttttgaaggtataaatgttaacagcagggagaagtgcataatcaagatcctgaaacctgttaagaagaaaaagatcaaaagagagataaagatattgcaaaatctctgtggtggaccaaatattgtcaaactccttgatatcgtcagagatcagcattcaaaaactccaagcttgatttttgagtacgtgaacagcacagatttcaaggttttgtacccaacgctaacagactatgacatacggtactacatatatgagcttctcaaggcactagattattgccattcacagggaataatgcacagggatgtcaaacctcataacgttatgatagaccatgaactgcggaagcttcgcttgatagattggggtcttgccgaattttaccacccagggaaggaatataatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="82053" stop="79003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81753" g_stop="81679" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81678" i_stop="81120" i_length="559">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.273" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81119" g_stop="80925" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="270" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80924" i_stop="79445" i_length="1480">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79444" g_stop="79303" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="412" r_length="142" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E395258" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81753" e_stop="81679"/>
          <exon e_start="81119" e_stop="80925"/>
          <exon e_start="79444" e_stop="79303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAGGTAAGATGATAAACACATCAGATGGCAGTCAATATGGCTTTTATGTATTCATGCTCCCTCTCCCCTGATTCTTTTTTTTTTTTTTAAGGAAGGTAACAGTTATATACTTCCTGTCCTCTTGGTCCTCCTTTTCTGTATCTTCTTTCTTCTCTCAGAACCAAGAATAGAGTTGTACTGATGTCTTAACTTACTATCTGGTCAAAACTTTGTTTGTCTCCAACATTTCCTTCTATTGCAGCTTTTCAAGGTTTGTATGAGTATGAGAATTTTGGGAGTCCCCAGTTTTCTTATGCTCAGCAACTATTTCTGAATTGAGTGGATATATTCTCATATACTATGATCAAATTATGAGATCAAACTATCAAAGTTATAACTCCTAGGCTCATCTCAAGTGGAAATTTTGGAATCCAAGATTCTGGTGCCATAAAACTGCACTAATTTGGATTCATCTTATATCTATATTTAGATAATTGGGAGTCTGTCGAATGTGTCTCGTGATCTTGGGTTAGTGGGAATGACTAAGACTGTAAACTCATATTTGTTCACCTTATCCTGCCTGCCAATACATGGATTTCAAATCCATCATCAAAAATGTAGATTTTTCTTATTGATATTGTCAGCTCATTCACTGTCTTGGTCATTCCAATTGATTACCTTTCCTCTGCAATTCGGTCTAAGTATAGCTTCTGAATGTGTTTTTTACAAGGTAAATGACCTCATAGTGAGGTGCTTACCATGTCTCTTGTTATCAGATGATATGAATTAGATTCACTGCATGCCTATTGGAAGTTGATTTTATATCTAGATTAATGGCTATGCTCGTTGTTACTCTTAACAATGTGACATTTTTTTTCTGACTTTGGATTTCTTAAGTAACTCTCTTGTATTCTTCTGATCTTATAATTGGTTAAGGAAAAAAAATTCACCAATGCCATGGATATTCTCTCCTCTGTTTGCTAATTGCTATTTAAATTTCATTTTCCTTTTTCACGAGTAATATTATATTCCCTTTTTGTCTGATTTGCGTGAGAGTAACTATTTGGAAATGGGGATGCTAATTATTGGATCCTGTTGATTTCTATCTCGAAGTTAGTTCTTCCTTTTTGCTACATGCCTACATCACCAGCCTACCTGATCATATGTCTAGGTTTCCTTTCTTTTGCCTCCTCCTGCGAAAAAAAGAAAAGAAATTTAACTTCTCAAGCTTTCTCATTGTGTATCAGCATAATTGTTTGTCAAATGCTAGATCTGTTCCTGCATACTTACTTTCCATTCGCTTAATTTACTCTATTAATTTCCCCTTCTTTTTTGAAAGAAAAGAAAGAATCACGTTTTTGGCATGACTGCTGAATTTGCTGAGGCCTTCATTTCTTGTGACAGTTGTTTAATAGACTCTTTGGGACCTATTCTTTGTGTACATTTCTTGACATGCTTACCAATTTATGGAGGTCGAAAACTGAAACTTCTTATCAACCTGCAGGCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATG</genome_strand>
        <mrna_strand>GTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E692762" ref_strand="+" ref_description="SGN-E692762 [LH_Ea09I24]">
      <seq>cgtttttcccaatatatggctttttcctaaaaatggtgtgtgagtaaagtagcgttattgctctggcggttgcgccaaacagaagcggggcccaattcctcctccggatctacccagcctgggtctcctttgttgccccttttccgaaatccgataccttaatcaacaactcttcagcctctgatgtccggataaaccatgtctaaagctcgagtatacaccgacatcaatgtgcttcgtcctagggaatattgggattacgaatcgctaactgttcaatggggtgatcaggatgactatgaggttgttcggaaagttggaagaggaaaatacagggaagtttttgaaggtataaatgttaacagcagggagaagtgcataatcaagatcctgaaacctgttaagaataaaaatatcgaaagagagataaagatattgcaaaatctctgtggtggaccagatattggcaaactccttgatatcgtcagagatcagcattcaaaaactccaagcttgatttttgagttcgtgaacagcacagatttcaaggatttgtatccaacgctaacagactatgacatacggtactacatatatgagcttctcaaggcactacattattgccattcacatggaataatgcatagggatgtccagcctcataacgttgtgatagaccatgaactgcggaagcttcgcttgatagattggggtcttgctgaattttaccacccagggaaggaatataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="83564" stop="79004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83268" g_stop="82985" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82984" i_stop="81809" i_length="1176">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81808" g_stop="81679" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="414" r_length="130" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81678" i_stop="81120" i_length="559">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.273" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81119" g_stop="80925" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="609" r_length="195" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80924" i_stop="79445" i_length="1480">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79444" g_stop="79304" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="750" r_length="141" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E692762" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E692762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83268" e_stop="82985"/>
          <exon e_start="81808" e_stop="81679"/>
          <exon e_start="81119" e_stop="80925"/>
          <exon e_start="79444" e_stop="79304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGGGTAAATATTTTCCCTTATTTAACCCTAATCGCTTTTGATTTTGTTTTTAGTTTTGGGGGTTTGTATACTGGATAATAGATTGAAATTCTTGAATTAGATGCTGTTTATTACCTTTTTTTAAAAAGATTGTTTGGTAAAATAATAACATCCACTTCTAGCATCCAAGAAAATAGTTTTTGCTTATGTTTCCTTGTTTTTTCCGTCTGAAGTAAAAAGTGGGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGGTATGTTTCCTTGTTTTTTTCGTCTGAAAGAAAAGTGGGTGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGTTATGTTTCCTTTTTTAAAGATAAGTGGAGGTTACATAGCATTGTAACATCCACTCCAGGGGTGGGTGAAACCTGAAAACAAATGTTGGGTTTCTTATTCCTATTTTTTGTCTAATAGATAATTGTGTGATCAGTGTTAGATGCTATTTTGGCGAATTCCTGCTATCTTGAATGGAATGACTTTCACATTGGAAAATACCTATTGGGTTAATGCAAAACTCCTGTCTAGTCTTGTTGAACTGAGTCTGTATTTTGTGGCTCCAGATTAGGTTGGGCTTCAAGTCTTTATATGTTTGTTACTTCTATATTAGCTTCCACATGATACAATGGAAGCTAAATAACAAATATAATATACCAATTAGTTGAGTTATATACCAATTTGTTGAGTTTAAGGATTGGTCCTGCTGGTGCACATTTGGACTGAAGTAAATGTTTGTGTAAGTCTTGTAATAAGAGTGAGATTTACAACCCGTTGTGTTAAAAGTTGAATTATTGAATACTTGAATGGAACAGCCCCGAAGTGGAGTGGATAATTATAGAGGCTTCATTTAGTTGACACCAGTTAGTTTATTTTTGTTATTGTATAGTTCTGCTGCATTTATCAAGATGAGAGCATTTTGTGTAACAAGAACTATATAAATGTCTTGCTAAAGTGGGAGAATATAGTTTGTTAATCTTGGTTCTAGAGTACCTTGACCCTTGGCTCAACGATTAGTTTTATCTTACACAAGTATTGGTTTCAGATATGATTCTATTTGACTTACTCAACTTTAATGCACCAGCTACATTGTATTATCCTCACTAGTGCATGTCATATTTATTATTGTAGTGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAGGTAAGATGATAAACACATCAGATGGCAGTCAATATGGCTTTTATGTATTCATGCTCCCTCTCCCCTGATTCTTTTTTTTTTTTTTAAGGAAGGTAACAGTTATATACTTCCTGTCCTCTTGGTCCTCCTTTTCTGTATCTTCTTTCTTCTCTCAGAACCAAGAATAGAGTTGTACTGATGTCTTAACTTACTATCTGGTCAAAACTTTGTTTGTCTCCAACATTTCCTTCTATTGCAGCTTTTCAAGGTTTGTATGAGTATGAGAATTTTGGGAGTCCCCAGTTTTCTTATGCTCAGCAACTATTTCTGAATTGAGTGGATATATTCTCATATACTATGATCAAATTATGAGATCAAACTATCAAAGTTATAACTCCTAGGCTCATCTCAAGTGGAAATTTTGGAATCCAAGATTCTGGTGCCATAAAACTGCACTAATTTGGATTCATCTTATATCTATATTTAGATAATTGGGAGTCTGTCGAATGTGTCTCGTGATCTTGGGTTAGTGGGAATGACTAAGACTGTAAACTCATATTTGTTCACCTTATCCTGCCTGCCAATACATGGATTTCAAATCCATCATCAAAAATGTAGATTTTTCTTATTGATATTGTCAGCTCATTCACTGTCTTGGTCATTCCAATTGATTACCTTTCCTCTGCAATTCGGTCTAAGTATAGCTTCTGAATGTGTTTTTTACAAGGTAAATGACCTCATAGTGAGGTGCTTACCATGTCTCTTGTTATCAGATGATATGAATTAGATTCACTGCATGCCTATTGGAAGTTGATTTTATATCTAGATTAATGGCTATGCTCGTTGTTACTCTTAACAATGTGACATTTTTTTTCTGACTTTGGATTTCTTAAGTAACTCTCTTGTATTCTTCTGATCTTATAATTGGTTAAGGAAAAAAAATTCACCAATGCCATGGATATTCTCTCCTCTGTTTGCTAATTGCTATTTAAATTTCATTTTCCTTTTTCACGAGTAATATTATATTCCCTTTTTGTCTGATTTGCGTGAGAGTAACTATTTGGAAATGGGGATGCTAATTATTGGATCCTGTTGATTTCTATCTCGAAGTTAGTTCTTCCTTTTTGCTACATGCCTACATCACCAGCCTACCTGATCATATGTCTAGGTTTCCTTTCTTTTGCCTCCTCCTGCGAAAAAAAGAAAAGAAATTTAACTTCTCAAGCTTTCTCATTGTGTATCAGCATAATTGTTTGTCAAATGCTAGATCTGTTCCTGCATACTTACTTTCCATTCGCTTAATTTACTCTATTAATTTCCCCTTCTTTTTTGAAAGAAAAGAAAGAATCACGTTTTTGGCATGACTGCTGAATTTGCTGAGGCCTTCATTTCTTGTGACAGTTGTTTAATAGACTCTTTGGGACCTATTCTTTGTGTACATTTCTTGACATGCTTACCAATTTATGGAGGTCGAAAACTGAAACTTCTTATCAACCTGCAGGCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAAT</genome_strand>
        <mrna_strand>CGTTTTTCCCAATATATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGCGTTATTGCTCTGGCGGTTGCGCCAAACAGAAGCGGGGCCCAATTCCTCCTCCGGATCTACCCAGCCTGGGTCTCCTTTGTTGCCCCTTTTCCGAAATCCGATACCTTAATCAACAACTCTTCAGCCTCTGATGTCCGGATAAACCATGTCTAAAGCTCGAGTATACACCGACATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGAGGAAAATACAGGGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAATAAAAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAGATATTGGCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTTCGTGAACAGCACAGATTTCAAGGATTTGTATCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTACATTATTGCCATTCACATGGAATAATGCATAGGGATGTCCAGCCTCATAACGTTGTGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCTGAATTTTACCACCCAGGGAAGGAATATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E467784" ref_strand="+" ref_description="SGN-E467784 [cSTB-1-N23]">
      <seq>cctcgtgccgaattcggcacgaggggaaagttggaagaggaaaatatagtgaagtttttgaaggtataaatgttcacagcaacgagaagtgcataatcaagatcctgaaacctgttaagaagaaaaagatcaagagagagatcaaaatcttgcagaacctctgtggcggaccaaatgttgtcaaactccttgatattgtcagagaccagcactcaaaaacaccaagcttaatttttgagtatgtgaacagtacagatttcaaagtactgtacccaactttaacggattatgacatacgctactacatatatgagcttctcaaggcactagactattgtcattctcagggaataatgcacagagatgtcaagccacataatgttatgatagaccatgagttgcggaagcttcgcttgatagactggggtcttgctgaattttaccatccaggaaaggaatataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="82082" stop="79004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81776" g_stop="81679" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="128" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81678" i_stop="81120" i_length="559">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.273" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81119" g_stop="80925" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="323" r_length="195" r_score="0.882"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80924" i_stop="79445" i_length="1480">
            <donor d_prob="0.989" d_score="0.90"/>
            <acceptor a_prob="0.992" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79444" g_stop="79304" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="464" r_length="141" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E467784" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E467784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81776" e_stop="81679"/>
          <exon e_start="81119" e_stop="80925"/>
          <exon e_start="79444" e_stop="79304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAGGTAAGATGATAAACACATCAGATGGCAGTCAATATGGCTTTTATGTATTCATGCTCCCTCTCCCCTGATTCTTTTTTTTTTTTTTAAGGAAGGTAACAGTTATATACTTCCTGTCCTCTTGGTCCTCCTTTTCTGTATCTTCTTTCTTCTCTCAGAACCAAGAATAGAGTTGTACTGATGTCTTAACTTACTATCTGGTCAAAACTTTGTTTGTCTCCAACATTTCCTTCTATTGCAGCTTTTCAAGGTTTGTATGAGTATGAGAATTTTGGGAGTCCCCAGTTTTCTTATGCTCAGCAACTATTTCTGAATTGAGTGGATATATTCTCATATACTATGATCAAATTATGAGATCAAACTATCAAAGTTATAACTCCTAGGCTCATCTCAAGTGGAAATTTTGGAATCCAAGATTCTGGTGCCATAAAACTGCACTAATTTGGATTCATCTTATATCTATATTTAGATAATTGGGAGTCTGTCGAATGTGTCTCGTGATCTTGGGTTAGTGGGAATGACTAAGACTGTAAACTCATATTTGTTCACCTTATCCTGCCTGCCAATACATGGATTTCAAATCCATCATCAAAAATGTAGATTTTTCTTATTGATATTGTCAGCTCATTCACTGTCTTGGTCATTCCAATTGATTACCTTTCCTCTGCAATTCGGTCTAAGTATAGCTTCTGAATGTGTTTTTTACAAGGTAAATGACCTCATAGTGAGGTGCTTACCATGTCTCTTGTTATCAGATGATATGAATTAGATTCACTGCATGCCTATTGGAAGTTGATTTTATATCTAGATTAATGGCTATGCTCGTTGTTACTCTTAACAATGTGACATTTTTTTTCTGACTTTGGATTTCTTAAGTAACTCTCTTGTATTCTTCTGATCTTATAATTGGTTAAGGAAAAAAAATTCACCAATGCCATGGATATTCTCTCCTCTGTTTGCTAATTGCTATTTAAATTTCATTTTCCTTTTTCACGAGTAATATTATATTCCCTTTTTGTCTGATTTGCGTGAGAGTAACTATTTGGAAATGGGGATGCTAATTATTGGATCCTGTTGATTTCTATCTCGAAGTTAGTTCTTCCTTTTTGCTACATGCCTACATCACCAGCCTACCTGATCATATGTCTAGGTTTCCTTTCTTTTGCCTCCTCCTGCGAAAAAAAGAAAAGAAATTTAACTTCTCAAGCTTTCTCATTGTGTATCAGCATAATTGTTTGTCAAATGCTAGATCTGTTCCTGCATACTTACTTTCCATTCGCTTAATTTACTCTATTAATTTCCCCTTCTTTTTTGAAAGAAAAGAAAGAATCACGTTTTTGGCATGACTGCTGAATTTGCTGAGGCCTTCATTTCTTGTGACAGTTGTTTAATAGACTCTTTGGGACCTATTCTTTGTGTACATTTCTTGACATGCTTACCAATTTATGGAGGTCGAAAACTGAAACTTCTTATCAACCTGCAGGCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAAT</genome_strand>
        <mrna_strand>TTGGAAGAGGAAAATATAGTGAAGTTTTTGAAGGTATAAATGTTCACAGCAACGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGAGAGAGATCAAAATCTTGCAGAACCTCTGTGGCGGACCAAATGTTGTCAAACTCCTTGATATTGTCAGAGACCAGCACTCAAAAACACCAAGCTTAATTTTTGAGTATGTGAACAGTACAGATTTCAAAGTACTGTACCCAACTTTAACGGATTATGACATACGCTACTACATATATGAGCTTCTCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTAGACTATTGTCATTCTCAGGGAATAATGCACAGAGATGTCAAGCCACATAATGTTATGATAGACCATGAGTTGCGGAAGCTTCGCTTGATAGACTGGGGTCTTGCTGAATTTTACCATCCAGGAAAGGAATATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E342660" ref_strand="+" ref_description="SGN-E342660 [cTOF-7-L21]">
      <seq>atcaaacagaagcggggcccaattccttcgttgcatctacccagcctgcgtcttctttgttgtcccttttccgaaatccgatacctttatcaataactcttcagtctctgatttccggataaaccatgtccaaagctcgagtatacaccgatatcaatgtgcttcgtcctagggaatattgggattacgaatcgctaactgttcaatggggtgatcaggatgactatgaggttgttcgaaaagttggaagaggaaaatacagtgaagtttttgaaggtataaatgttaacagcagggagaagtgcataatcaagatcctgaaacctgttaagaagaaaaagatcaaaagagagataaagatattgcaaaatctctgtggtggaccaaatattgtcaaactccttgatatcgtcagagatcagcattcaaaaactccaagcttgatttttgagtacgtgaacagcacagatttcaaggttttgtacccaacgctaacagactatgacatacggtactacatatatgagcttctcaaggcactagattattgccattcacagggaataatgcacagggatgtcaaacctcataacgttatgatagaccatgaactgcggaagcttcgcttgatagattggggtcttgccgaattttaccacccagggaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="83495" stop="79011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83195" g_stop="82985" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82984" i_stop="81809" i_length="1176">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81808" g_stop="81679" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="341" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81678" i_stop="81120" i_length="559">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.273" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81119" g_stop="80925" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="536" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80924" i_stop="79445" i_length="1480">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79444" g_stop="79311" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="670" r_length="134" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E342660" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83195" e_stop="82985"/>
          <exon e_start="81808" e_stop="81679"/>
          <exon e_start="81119" e_stop="80925"/>
          <exon e_start="79444" e_stop="79311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGGGTAAATATTTTCCCTTATTTAACCCTAATCGCTTTTGATTTTGTTTTTAGTTTTGGGGGTTTGTATACTGGATAATAGATTGAAATTCTTGAATTAGATGCTGTTTATTACCTTTTTTTAAAAAGATTGTTTGGTAAAATAATAACATCCACTTCTAGCATCCAAGAAAATAGTTTTTGCTTATGTTTCCTTGTTTTTTCCGTCTGAAGTAAAAAGTGGGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGGTATGTTTCCTTGTTTTTTTCGTCTGAAAGAAAAGTGGGTGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGTTATGTTTCCTTTTTTAAAGATAAGTGGAGGTTACATAGCATTGTAACATCCACTCCAGGGGTGGGTGAAACCTGAAAACAAATGTTGGGTTTCTTATTCCTATTTTTTGTCTAATAGATAATTGTGTGATCAGTGTTAGATGCTATTTTGGCGAATTCCTGCTATCTTGAATGGAATGACTTTCACATTGGAAAATACCTATTGGGTTAATGCAAAACTCCTGTCTAGTCTTGTTGAACTGAGTCTGTATTTTGTGGCTCCAGATTAGGTTGGGCTTCAAGTCTTTATATGTTTGTTACTTCTATATTAGCTTCCACATGATACAATGGAAGCTAAATAACAAATATAATATACCAATTAGTTGAGTTATATACCAATTTGTTGAGTTTAAGGATTGGTCCTGCTGGTGCACATTTGGACTGAAGTAAATGTTTGTGTAAGTCTTGTAATAAGAGTGAGATTTACAACCCGTTGTGTTAAAAGTTGAATTATTGAATACTTGAATGGAACAGCCCCGAAGTGGAGTGGATAATTATAGAGGCTTCATTTAGTTGACACCAGTTAGTTTATTTTTGTTATTGTATAGTTCTGCTGCATTTATCAAGATGAGAGCATTTTGTGTAACAAGAACTATATAAATGTCTTGCTAAAGTGGGAGAATATAGTTTGTTAATCTTGGTTCTAGAGTACCTTGACCCTTGGCTCAACGATTAGTTTTATCTTACACAAGTATTGGTTTCAGATATGATTCTATTTGACTTACTCAACTTTAATGCACCAGCTACATTGTATTATCCTCACTAGTGCATGTCATATTTATTATTGTAGTGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAGGTAAGATGATAAACACATCAGATGGCAGTCAATATGGCTTTTATGTATTCATGCTCCCTCTCCCCTGATTCTTTTTTTTTTTTTTAAGGAAGGTAACAGTTATATACTTCCTGTCCTCTTGGTCCTCCTTTTCTGTATCTTCTTTCTTCTCTCAGAACCAAGAATAGAGTTGTACTGATGTCTTAACTTACTATCTGGTCAAAACTTTGTTTGTCTCCAACATTTCCTTCTATTGCAGCTTTTCAAGGTTTGTATGAGTATGAGAATTTTGGGAGTCCCCAGTTTTCTTATGCTCAGCAACTATTTCTGAATTGAGTGGATATATTCTCATATACTATGATCAAATTATGAGATCAAACTATCAAAGTTATAACTCCTAGGCTCATCTCAAGTGGAAATTTTGGAATCCAAGATTCTGGTGCCATAAAACTGCACTAATTTGGATTCATCTTATATCTATATTTAGATAATTGGGAGTCTGTCGAATGTGTCTCGTGATCTTGGGTTAGTGGGAATGACTAAGACTGTAAACTCATATTTGTTCACCTTATCCTGCCTGCCAATACATGGATTTCAAATCCATCATCAAAAATGTAGATTTTTCTTATTGATATTGTCAGCTCATTCACTGTCTTGGTCATTCCAATTGATTACCTTTCCTCTGCAATTCGGTCTAAGTATAGCTTCTGAATGTGTTTTTTACAAGGTAAATGACCTCATAGTGAGGTGCTTACCATGTCTCTTGTTATCAGATGATATGAATTAGATTCACTGCATGCCTATTGGAAGTTGATTTTATATCTAGATTAATGGCTATGCTCGTTGTTACTCTTAACAATGTGACATTTTTTTTCTGACTTTGGATTTCTTAAGTAACTCTCTTGTATTCTTCTGATCTTATAATTGGTTAAGGAAAAAAAATTCACCAATGCCATGGATATTCTCTCCTCTGTTTGCTAATTGCTATTTAAATTTCATTTTCCTTTTTCACGAGTAATATTATATTCCCTTTTTGTCTGATTTGCGTGAGAGTAACTATTTGGAAATGGGGATGCTAATTATTGGATCCTGTTGATTTCTATCTCGAAGTTAGTTCTTCCTTTTTGCTACATGCCTACATCACCAGCCTACCTGATCATATGTCTAGGTTTCCTTTCTTTTGCCTCCTCCTGCGAAAAAAAGAAAAGAAATTTAACTTCTCAAGCTTTCTCATTGTGTATCAGCATAATTGTTTGTCAAATGCTAGATCTGTTCCTGCATACTTACTTTCCATTCGCTTAATTTACTCTATTAATTTCCCCTTCTTTTTTGAAAGAAAAGAAAGAATCACGTTTTTGGCATGACTGCTGAATTTGCTGAGGCCTTCATTTCTTGTGACAGTTGTTTAATAGACTCTTTGGGACCTATTCTTTGTGTACATTTCTTGACATGCTTACCAATTTATGGAGGTCGAAAACTGAAACTTCTTATCAACCTGCAGGCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGA</genome_strand>
        <mrna_strand>ATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E452500" ref_strand="+" ref_description="SGN-E452500 [cSTS-17-E3]">
      <seq>gtcaaacagaagctgggcccaattactcctccgcatctacccagcctgcgtcttctttgtgtccccttttccgaaatccgataccttaatcaacaactcttcagtctctgatttccgataaaaccatgtctaaagctcgagtatacaccgatatcaatgtgcttcgtcctagggaatattgggattacgaatcgctaactgttcaatggggtgatcaggatgactatgaggttgttcgaaaagttggaagaggaaaatacagtgaagtttttgaaggtataaatgttaacagcaacgagaagtgcataatcaagatcctgaaacctgttaagaagaaaaagatcaaaagagagataaagatattgcaaaacctctgtggtggaccaaacattgtcaaactccttgatatcgtcagagatcagcattcaaaaactccaagcttgatttttgagtacgtgaacagcacagatttcaaggttttgtacccaacgctaacagattacgacatacggtactacatatatgagcttctcaaggcactagattattgccattcacagggaataatgcataggggatgtcaagcctcataacgttatgatagatcatgaactgcngaaagctcgcttgatagattggggtcttgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="83463" stop="79032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83195" g_stop="82985" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82984" i_stop="81809" i_length="1176">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81808" g_stop="81679" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="341" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81678" i_stop="81120" i_length="559">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.273" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81119" g_stop="80925" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="536" r_length="195" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80924" i_stop="79445" i_length="1480">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79444" g_stop="79332" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="650" r_length="114" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E452500" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E452500" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83195" e_stop="82985"/>
          <exon e_start="81808" e_stop="81679"/>
          <exon e_start="81119" e_stop="80925"/>
          <exon e_start="79444" e_stop="79332"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGGGTAAATATTTTCCCTTATTTAACCCTAATCGCTTTTGATTTTGTTTTTAGTTTTGGGGGTTTGTATACTGGATAATAGATTGAAATTCTTGAATTAGATGCTGTTTATTACCTTTTTTTAAAAAGATTGTTTGGTAAAATAATAACATCCACTTCTAGCATCCAAGAAAATAGTTTTTGCTTATGTTTCCTTGTTTTTTCCGTCTGAAGTAAAAAGTGGGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGGTATGTTTCCTTGTTTTTTTCGTCTGAAAGAAAAGTGGGTGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGTTATGTTTCCTTTTTTAAAGATAAGTGGAGGTTACATAGCATTGTAACATCCACTCCAGGGGTGGGTGAAACCTGAAAACAAATGTTGGGTTTCTTATTCCTATTTTTTGTCTAATAGATAATTGTGTGATCAGTGTTAGATGCTATTTTGGCGAATTCCTGCTATCTTGAATGGAATGACTTTCACATTGGAAAATACCTATTGGGTTAATGCAAAACTCCTGTCTAGTCTTGTTGAACTGAGTCTGTATTTTGTGGCTCCAGATTAGGTTGGGCTTCAAGTCTTTATATGTTTGTTACTTCTATATTAGCTTCCACATGATACAATGGAAGCTAAATAACAAATATAATATACCAATTAGTTGAGTTATATACCAATTTGTTGAGTTTAAGGATTGGTCCTGCTGGTGCACATTTGGACTGAAGTAAATGTTTGTGTAAGTCTTGTAATAAGAGTGAGATTTACAACCCGTTGTGTTAAAAGTTGAATTATTGAATACTTGAATGGAACAGCCCCGAAGTGGAGTGGATAATTATAGAGGCTTCATTTAGTTGACACCAGTTAGTTTATTTTTGTTATTGTATAGTTCTGCTGCATTTATCAAGATGAGAGCATTTTGTGTAACAAGAACTATATAAATGTCTTGCTAAAGTGGGAGAATATAGTTTGTTAATCTTGGTTCTAGAGTACCTTGACCCTTGGCTCAACGATTAGTTTTATCTTACACAAGTATTGGTTTCAGATATGATTCTATTTGACTTACTCAACTTTAATGCACCAGCTACATTGTATTATCCTCACTAGTGCATGTCATATTTATTATTGTAGTGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAGGTAAGATGATAAACACATCAGATGGCAGTCAATATGGCTTTTATGTATTCATGCTCCCTCTCCCCTGATTCTTTTTTTTTTTTTTAAGGAAGGTAACAGTTATATACTTCCTGTCCTCTTGGTCCTCCTTTTCTGTATCTTCTTTCTTCTCTCAGAACCAAGAATAGAGTTGTACTGATGTCTTAACTTACTATCTGGTCAAAACTTTGTTTGTCTCCAACATTTCCTTCTATTGCAGCTTTTCAAGGTTTGTATGAGTATGAGAATTTTGGGAGTCCCCAGTTTTCTTATGCTCAGCAACTATTTCTGAATTGAGTGGATATATTCTCATATACTATGATCAAATTATGAGATCAAACTATCAAAGTTATAACTCCTAGGCTCATCTCAAGTGGAAATTTTGGAATCCAAGATTCTGGTGCCATAAAACTGCACTAATTTGGATTCATCTTATATCTATATTTAGATAATTGGGAGTCTGTCGAATGTGTCTCGTGATCTTGGGTTAGTGGGAATGACTAAGACTGTAAACTCATATTTGTTCACCTTATCCTGCCTGCCAATACATGGATTTCAAATCCATCATCAAAAATGTAGATTTTTCTTATTGATATTGTCAGCTCATTCACTGTCTTGGTCATTCCAATTGATTACCTTTCCTCTGCAATTCGGTCTAAGTATAGCTTCTGAATGTGTTTTTTACAAGGTAAATGACCTCATAGTGAGGTGCTTACCATGTCTCTTGTTATCAGATGATATGAATTAGATTCACTGCATGCCTATTGGAAGTTGATTTTATATCTAGATTAATGGCTATGCTCGTTGTTACTCTTAACAATGTGACATTTTTTTTCTGACTTTGGATTTCTTAAGTAACTCTCTTGTATTCTTCTGATCTTATAATTGGTTAAGGAAAAAAAATTCACCAATGCCATGGATATTCTCTCCTCTGTTTGCTAATTGCTATTTAAATTTCATTTTCCTTTTTCACGAGTAATATTATATTCCCTTTTTGTCTGATTTGCGTGAGAGTAACTATTTGGAAATGGGGATGCTAATTATTGGATCCTGTTGATTTCTATCTCGAAGTTAGTTCTTCCTTTTTGCTACATGCCTACATCACCAGCCTACCTGATCATATGTCTAGGTTTCCTTTCTTTTGCCTCCTCCTGCGAAAAAAAGAAAAGAAATTTAACTTCTCAAGCTTTCTCATTGTGTATCAGCATAATTGTTTGTCAAATGCTAGATCTGTTCCTGCATACTTACTTTCCATTCGCTTAATTTACTCTATTAATTTCCCCTTCTTTTTTGAAAGAAAAGAAAGAATCACGTTTTTGGCATGACTGCTGAATTTGCTGAGGCCTTCATTTCTTGTGACAGTTGTTTAATAGACTCTTTGGGACCTATTCTTTGTGTACATTTCTTGACATGCTTACCAATTTATGGAGGTCGAAAACTGAAACTTCTTATCAACCTGCAGGCACTAGATTATTGCCATTCACAGGGAATAATGCACA-GGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGA</genome_strand>
        <mrna_strand>GTCAAACAGAAGCTGGGCCCAATTACTCCTCCGCATCTACCCAGCCTGCGTCTTCTTTGTGTCCCCTTTTCCGAAATCCGATACCTTAATCAACAACTCTTCAGTCTCTGATTTCCGATAAAACCATGTCTAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAACGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGAGAGATAAAGATATTGCAAAACCTCTGTGGTGGACCAAACATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGATTACGACATACGGTACTACATATATGAGCTTCTCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTAGATTATTGCCATTCACAGGGAATAATGCATAGGGGATGTCAAGCCTCATAACGTTATGATAGATCATGAACTGCNGAAAGCTCGCTTGATAGATTGGGGTCTTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E462815" ref_strand="+" ref_description="SGN-E462815 [cPRO-12-F2]">
      <seq>attactcctccgcatctacccagcctgcgtcttctttgtgtccccttttccgaaatccgataccttaatcaacaactcttcagtctctgatttccgataaaaccatgtctaaagctcgagtatacaccgatatcaatgtgcttcgtcctagggaatattgggattacgaatcgctaactgttcaatggggtgatcaggatgactatgaggttgttcgaaaagttggaagaggaaaatacagtgaagtttttgaaggtataaatgttaacagcaacgagaagtgcataatcaagatcctgaaacctgttaagaagaaaaagatcaaaagagagataaagatattgcaaaacctctgtggtggaccaaacattgtcaaactccttgatatcgtcagagatcagcattcaaaaactccaagcttgatttttgagtacgtgaacagcacagatttcaaggttttgtacccaacgctaacagattacgacatacggtactacatatatgagcttctcaaggcactagattattgccattcacagggaataatgcatanggatgtcaagcctcataacgttatgatagatcatgaactgcggaagcttcgcttgatagattggggtcttgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="83463" stop="79032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83174" g_stop="82985" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82984" i_stop="81809" i_length="1176">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81808" g_stop="81679" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="320" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81678" i_stop="81120" i_length="559">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.273" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81119" g_stop="80925" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="515" r_length="195" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80924" i_stop="79445" i_length="1480">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79444" g_stop="79332" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="628" r_length="113" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E462815" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E462815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83174" e_stop="82985"/>
          <exon e_start="81808" e_stop="81679"/>
          <exon e_start="81119" e_stop="80925"/>
          <exon e_start="79444" e_stop="79332"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGGGTAAATATTTTCCCTTATTTAACCCTAATCGCTTTTGATTTTGTTTTTAGTTTTGGGGGTTTGTATACTGGATAATAGATTGAAATTCTTGAATTAGATGCTGTTTATTACCTTTTTTTAAAAAGATTGTTTGGTAAAATAATAACATCCACTTCTAGCATCCAAGAAAATAGTTTTTGCTTATGTTTCCTTGTTTTTTCCGTCTGAAGTAAAAAGTGGGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGGTATGTTTCCTTGTTTTTTTCGTCTGAAAGAAAAGTGGGTGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGTTATGTTTCCTTTTTTAAAGATAAGTGGAGGTTACATAGCATTGTAACATCCACTCCAGGGGTGGGTGAAACCTGAAAACAAATGTTGGGTTTCTTATTCCTATTTTTTGTCTAATAGATAATTGTGTGATCAGTGTTAGATGCTATTTTGGCGAATTCCTGCTATCTTGAATGGAATGACTTTCACATTGGAAAATACCTATTGGGTTAATGCAAAACTCCTGTCTAGTCTTGTTGAACTGAGTCTGTATTTTGTGGCTCCAGATTAGGTTGGGCTTCAAGTCTTTATATGTTTGTTACTTCTATATTAGCTTCCACATGATACAATGGAAGCTAAATAACAAATATAATATACCAATTAGTTGAGTTATATACCAATTTGTTGAGTTTAAGGATTGGTCCTGCTGGTGCACATTTGGACTGAAGTAAATGTTTGTGTAAGTCTTGTAATAAGAGTGAGATTTACAACCCGTTGTGTTAAAAGTTGAATTATTGAATACTTGAATGGAACAGCCCCGAAGTGGAGTGGATAATTATAGAGGCTTCATTTAGTTGACACCAGTTAGTTTATTTTTGTTATTGTATAGTTCTGCTGCATTTATCAAGATGAGAGCATTTTGTGTAACAAGAACTATATAAATGTCTTGCTAAAGTGGGAGAATATAGTTTGTTAATCTTGGTTCTAGAGTACCTTGACCCTTGGCTCAACGATTAGTTTTATCTTACACAAGTATTGGTTTCAGATATGATTCTATTTGACTTACTCAACTTTAATGCACCAGCTACATTGTATTATCCTCACTAGTGCATGTCATATTTATTATTGTAGTGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAGGTAAGATGATAAACACATCAGATGGCAGTCAATATGGCTTTTATGTATTCATGCTCCCTCTCCCCTGATTCTTTTTTTTTTTTTTAAGGAAGGTAACAGTTATATACTTCCTGTCCTCTTGGTCCTCCTTTTCTGTATCTTCTTTCTTCTCTCAGAACCAAGAATAGAGTTGTACTGATGTCTTAACTTACTATCTGGTCAAAACTTTGTTTGTCTCCAACATTTCCTTCTATTGCAGCTTTTCAAGGTTTGTATGAGTATGAGAATTTTGGGAGTCCCCAGTTTTCTTATGCTCAGCAACTATTTCTGAATTGAGTGGATATATTCTCATATACTATGATCAAATTATGAGATCAAACTATCAAAGTTATAACTCCTAGGCTCATCTCAAGTGGAAATTTTGGAATCCAAGATTCTGGTGCCATAAAACTGCACTAATTTGGATTCATCTTATATCTATATTTAGATAATTGGGAGTCTGTCGAATGTGTCTCGTGATCTTGGGTTAGTGGGAATGACTAAGACTGTAAACTCATATTTGTTCACCTTATCCTGCCTGCCAATACATGGATTTCAAATCCATCATCAAAAATGTAGATTTTTCTTATTGATATTGTCAGCTCATTCACTGTCTTGGTCATTCCAATTGATTACCTTTCCTCTGCAATTCGGTCTAAGTATAGCTTCTGAATGTGTTTTTTACAAGGTAAATGACCTCATAGTGAGGTGCTTACCATGTCTCTTGTTATCAGATGATATGAATTAGATTCACTGCATGCCTATTGGAAGTTGATTTTATATCTAGATTAATGGCTATGCTCGTTGTTACTCTTAACAATGTGACATTTTTTTTCTGACTTTGGATTTCTTAAGTAACTCTCTTGTATTCTTCTGATCTTATAATTGGTTAAGGAAAAAAAATTCACCAATGCCATGGATATTCTCTCCTCTGTTTGCTAATTGCTATTTAAATTTCATTTTCCTTTTTCACGAGTAATATTATATTCCCTTTTTGTCTGATTTGCGTGAGAGTAACTATTTGGAAATGGGGATGCTAATTATTGGATCCTGTTGATTTCTATCTCGAAGTTAGTTCTTCCTTTTTGCTACATGCCTACATCACCAGCCTACCTGATCATATGTCTAGGTTTCCTTTCTTTTGCCTCCTCCTGCGAAAAAAAGAAAAGAAATTTAACTTCTCAAGCTTTCTCATTGTGTATCAGCATAATTGTTTGTCAAATGCTAGATCTGTTCCTGCATACTTACTTTCCATTCGCTTAATTTACTCTATTAATTTCCCCTTCTTTTTTGAAAGAAAAGAAAGAATCACGTTTTTGGCATGACTGCTGAATTTGCTGAGGCCTTCATTTCTTGTGACAGTTGTTTAATAGACTCTTTGGGACCTATTCTTTGTGTACATTTCTTGACATGCTTACCAATTTATGGAGGTCGAAAACTGAAACTTCTTATCAACCTGCAGGCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGA</genome_strand>
        <mrna_strand>ATTACTCCTCCGCATCTACCCAGCCTGCGTCTTCTTTGTGTCCCCTTTTCCGAAATCCGATACCTTAATCAACAACTCTTCAGTCTCTGATTTCCGATAAAACCATGTCTAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAACGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGAGAGATAAAGATATTGCAAAACCTCTGTGGTGGACCAAACATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGATTACGACATACGGTACTACATATATGAGCTTCTCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTAGATTATTGCCATTCACAGGGAATAATGCATANGGATGTCAAGCCTCATAACGTTATGATAGATCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E459725" ref_strand="+" ref_description="SGN-E459725 [cPRO-28-B14]">
      <seq>ccaatccatggctttttcctaaaagtgttgtgcgcgttctgtaagtaaagtagtgttactgctctggcggttgcgtcaaacagaagctgggcccaattactcctccgcatctacccagcctgcgtcttctttgtttccccttttccgaaatccgataccttaatcaacaactcttcagtctctgatttccgataaaaccatgtctaaagctcgagtatacaccgatatcaatgtgcttcgtcctagggaatattgggattacgaatcgctaactgttcaatggggtgatcaggatgactatgaggttgttcgaaaagttggaagaggaaaatacagtgaagtttttgaaggtataaatattaacagcaacgagaagtgcataatcaagatcctgaaacctgttaagaagaaaaagatcaaaagagagataaagatattgcaaaacctctgtggtggaccaaacattgtcaaactccttgatatcgtcagagatcagcattcaaaaactccaagcttgatttttgagtacgtgaacagcacagatttcaaggtttttgtacccaacactaacagattacgacatacggtactacatatatgagcttctncaggcactagattattgccattcacagggaaatatgcatagggatgtcaagcctcataacgntatgatagatcatgaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="83560" stop="79067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83224" g_stop="82985" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="285" r_length="240" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82984" i_stop="81809" i_length="1176">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81808" g_stop="81679" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="415" r_length="130" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81678" i_stop="81120" i_length="559">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.273" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81119" g_stop="80925" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="611" r_length="196" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80924" i_stop="79445" i_length="1480">
            <donor d_prob="0.989" d_score="0.90"/>
            <acceptor a_prob="0.992" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79444" g_stop="79367" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="689" r_length="78" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E459725" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E459725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83224" e_stop="82985"/>
          <exon e_start="81808" e_stop="81679"/>
          <exon e_start="81119" e_stop="80925"/>
          <exon e_start="79444" e_stop="79367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGGGTAAATATTTTCCCTTATTTAACCCTAATCGCTTTTGATTTTGTTTTTAGTTTTGGGGGTTTGTATACTGGATAATAGATTGAAATTCTTGAATTAGATGCTGTTTATTACCTTTTTTTAAAAAGATTGTTTGGTAAAATAATAACATCCACTTCTAGCATCCAAGAAAATAGTTTTTGCTTATGTTTCCTTGTTTTTTCCGTCTGAAGTAAAAAGTGGGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGGTATGTTTCCTTGTTTTTTTCGTCTGAAAGAAAAGTGGGTGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGTTATGTTTCCTTTTTTAAAGATAAGTGGAGGTTACATAGCATTGTAACATCCACTCCAGGGGTGGGTGAAACCTGAAAACAAATGTTGGGTTTCTTATTCCTATTTTTTGTCTAATAGATAATTGTGTGATCAGTGTTAGATGCTATTTTGGCGAATTCCTGCTATCTTGAATGGAATGACTTTCACATTGGAAAATACCTATTGGGTTAATGCAAAACTCCTGTCTAGTCTTGTTGAACTGAGTCTGTATTTTGTGGCTCCAGATTAGGTTGGGCTTCAAGTCTTTATATGTTTGTTACTTCTATATTAGCTTCCACATGATACAATGGAAGCTAAATAACAAATATAATATACCAATTAGTTGAGTTATATACCAATTTGTTGAGTTTAAGGATTGGTCCTGCTGGTGCACATTTGGACTGAAGTAAATGTTTGTGTAAGTCTTGTAATAAGAGTGAGATTTACAACCCGTTGTGTTAAAAGTTGAATTATTGAATACTTGAATGGAACAGCCCCGAAGTGGAGTGGATAATTATAGAGGCTTCATTTAGTTGACACCAGTTAGTTTATTTTTGTTATTGTATAGTTCTGCTGCATTTATCAAGATGAGAGCATTTTGTGTAACAAGAACTATATAAATGTCTTGCTAAAGTGGGAGAATATAGTTTGTTAATCTTGGTTCTAGAGTACCTTGACCCTTGGCTCAACGATTAGTTTTATCTTACACAAGTATTGGTTTCAGATATGATTCTATTTGACTTACTCAACTTTAATGCACCAGCTACATTGTATTATCCTCACTAGTGCATGTCATATTTATTATTGTAGTGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGG-TTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAGGTAAGATGATAAACACATCAGATGGCAGTCAATATGGCTTTTATGTATTCATGCTCCCTCTCCCCTGATTCTTTTTTTTTTTTTTAAGGAAGGTAACAGTTATATACTTCCTGTCCTCTTGGTCCTCCTTTTCTGTATCTTCTTTCTTCTCTCAGAACCAAGAATAGAGTTGTACTGATGTCTTAACTTACTATCTGGTCAAAACTTTGTTTGTCTCCAACATTTCCTTCTATTGCAGCTTTTCAAGGTTTGTATGAGTATGAGAATTTTGGGAGTCCCCAGTTTTCTTATGCTCAGCAACTATTTCTGAATTGAGTGGATATATTCTCATATACTATGATCAAATTATGAGATCAAACTATCAAAGTTATAACTCCTAGGCTCATCTCAAGTGGAAATTTTGGAATCCAAGATTCTGGTGCCATAAAACTGCACTAATTTGGATTCATCTTATATCTATATTTAGATAATTGGGAGTCTGTCGAATGTGTCTCGTGATCTTGGGTTAGTGGGAATGACTAAGACTGTAAACTCATATTTGTTCACCTTATCCTGCCTGCCAATACATGGATTTCAAATCCATCATCAAAAATGTAGATTTTTCTTATTGATATTGTCAGCTCATTCACTGTCTTGGTCATTCCAATTGATTACCTTTCCTCTGCAATTCGGTCTAAGTATAGCTTCTGAATGTGTTTTTTACAAGGTAAATGACCTCATAGTGAGGTGCTTACCATGTCTCTTGTTATCAGATGATATGAATTAGATTCACTGCATGCCTATTGGAAGTTGATTTTATATCTAGATTAATGGCTATGCTCGTTGTTACTCTTAACAATGTGACATTTTTTTTCTGACTTTGGATTTCTTAAGTAACTCTCTTGTATTCTTCTGATCTTATAATTGGTTAAGGAAAAAAAATTCACCAATGCCATGGATATTCTCTCCTCTGTTTGCTAATTGCTATTTAAATTTCATTTTCCTTTTTCACGAGTAATATTATATTCCCTTTTTGTCTGATTTGCGTGAGAGTAACTATTTGGAAATGGGGATGCTAATTATTGGATCCTGTTGATTTCTATCTCGAAGTTAGTTCTTCCTTTTTGCTACATGCCTACATCACCAGCCTACCTGATCATATGTCTAGGTTTCCTTTCTTTTGCCTCCTCCTGCGAAAAAAAGAAAAGAAATTTAACTTCTCAAGCTTTCTCATTGTGTATCAGCATAATTGTTTGTCAAATGCTAGATCTGTTCCTGCATACTTACTTTCCATTCGCTTAATTTACTCTATTAATTTCCCCTTCTTTTTTGAAAGAAAAGAAAGAATCACGTTTTTGGCATGACTGCTGAATTTGCTGAGGCCTTCATTTCTTGTGACAGTTGTTTAATAGACTCTTTGGGACCTATTCTTTGTGTACATTTCTTGACATGCTTACCAATTTATGGAGGTCGAAAACTGAAACTTCTTATCAACCTGCAGGCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTG</genome_strand>
        <mrna_strand>TAAAGTAGTGTTACTGCTCTGGCGGTTGCGTCAAACAGAAGCTGGGCCCAATTACTCCTCCGCATCTACCCAGCCTGCGTCTTCTTTGTTTCCCCTTTTCCGAAATCCGATACCTTAATCAACAACTCTTCAGTCTCTGATTTCCGATAAAACCATGTCTAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATATTAACAGCAACGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGAGAGATAAAGATATTGCAAAACCTCTGTGGTGGACCAAACATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTTGTACCCAACACTAACAGATTACGACATACGGTACTACATATATGAGCTTCTNCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTAGATTATTGCCATTCACAGGGAAATATGCATAGGGATGTCAAGCCTCATAACGNTATGATAGATCATGAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E485126" ref_strand="+" ref_description="SGN-E485126 [cSTE-16-L19]">
      <seq>gagagcaaaaagctttcccaatccatggctttttcctaaaagtgttgtgcgcgttctgtaagtaaagtagtgttactgctctggcggttgcgtcaaacagaagctgggcccaattactcctccgcatctacccagcctgcgtcttctttgtttccccttttccgaaatccgataccttaatcaacaactcttcagtctctgatttccgataaaaccatgtctaaagctcgagtatacaccgatatcaatgtgcttcgtcctagggaatattgggattacgaatcgctaactgttcaatggggtgatcaggatgactatgaggttgttcgaaaagttggaagaggaaaatacagtgaagtttttgaaggtataaatattaacagcaacgagaagtgcataatcaagatcctgaaacctgttaagaagaaaaagatcaaaagagagataaagatattgcaaaacctctgtggtggaccaaacattgtcaaactccttgatatcgtcagagatcagcattcaaaaactccaagcttgatttttgagtacgtgaacagcacagatttcaaggttttgtacccaacactaacagattacgacatacggtactacatatatgagcttctcaaggcactagattattgccattcacagggaataatgcatanggatgtcaagcctcataacgttatgatagatcatgaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="83577" stop="79067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83224" g_stop="82985" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="302" r_length="240" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82984" i_stop="81809" i_length="1176">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81808" g_stop="81679" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="432" r_length="130" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81678" i_stop="81120" i_length="559">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.273" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81119" g_stop="80925" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="627" r_length="195" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80924" i_stop="79445" i_length="1480">
            <donor d_prob="0.989" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79444" g_stop="79367" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="705" r_length="78" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E485126" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E485126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83224" e_stop="82985"/>
          <exon e_start="81808" e_stop="81679"/>
          <exon e_start="81119" e_stop="80925"/>
          <exon e_start="79444" e_stop="79367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGGGTAAATATTTTCCCTTATTTAACCCTAATCGCTTTTGATTTTGTTTTTAGTTTTGGGGGTTTGTATACTGGATAATAGATTGAAATTCTTGAATTAGATGCTGTTTATTACCTTTTTTTAAAAAGATTGTTTGGTAAAATAATAACATCCACTTCTAGCATCCAAGAAAATAGTTTTTGCTTATGTTTCCTTGTTTTTTCCGTCTGAAGTAAAAAGTGGGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGGTATGTTTCCTTGTTTTTTTCGTCTGAAAGAAAAGTGGGTGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGTTATGTTTCCTTTTTTAAAGATAAGTGGAGGTTACATAGCATTGTAACATCCACTCCAGGGGTGGGTGAAACCTGAAAACAAATGTTGGGTTTCTTATTCCTATTTTTTGTCTAATAGATAATTGTGTGATCAGTGTTAGATGCTATTTTGGCGAATTCCTGCTATCTTGAATGGAATGACTTTCACATTGGAAAATACCTATTGGGTTAATGCAAAACTCCTGTCTAGTCTTGTTGAACTGAGTCTGTATTTTGTGGCTCCAGATTAGGTTGGGCTTCAAGTCTTTATATGTTTGTTACTTCTATATTAGCTTCCACATGATACAATGGAAGCTAAATAACAAATATAATATACCAATTAGTTGAGTTATATACCAATTTGTTGAGTTTAAGGATTGGTCCTGCTGGTGCACATTTGGACTGAAGTAAATGTTTGTGTAAGTCTTGTAATAAGAGTGAGATTTACAACCCGTTGTGTTAAAAGTTGAATTATTGAATACTTGAATGGAACAGCCCCGAAGTGGAGTGGATAATTATAGAGGCTTCATTTAGTTGACACCAGTTAGTTTATTTTTGTTATTGTATAGTTCTGCTGCATTTATCAAGATGAGAGCATTTTGTGTAACAAGAACTATATAAATGTCTTGCTAAAGTGGGAGAATATAGTTTGTTAATCTTGGTTCTAGAGTACCTTGACCCTTGGCTCAACGATTAGTTTTATCTTACACAAGTATTGGTTTCAGATATGATTCTATTTGACTTACTCAACTTTAATGCACCAGCTACATTGTATTATCCTCACTAGTGCATGTCATATTTATTATTGTAGTGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAGGTAAGATGATAAACACATCAGATGGCAGTCAATATGGCTTTTATGTATTCATGCTCCCTCTCCCCTGATTCTTTTTTTTTTTTTTAAGGAAGGTAACAGTTATATACTTCCTGTCCTCTTGGTCCTCCTTTTCTGTATCTTCTTTCTTCTCTCAGAACCAAGAATAGAGTTGTACTGATGTCTTAACTTACTATCTGGTCAAAACTTTGTTTGTCTCCAACATTTCCTTCTATTGCAGCTTTTCAAGGTTTGTATGAGTATGAGAATTTTGGGAGTCCCCAGTTTTCTTATGCTCAGCAACTATTTCTGAATTGAGTGGATATATTCTCATATACTATGATCAAATTATGAGATCAAACTATCAAAGTTATAACTCCTAGGCTCATCTCAAGTGGAAATTTTGGAATCCAAGATTCTGGTGCCATAAAACTGCACTAATTTGGATTCATCTTATATCTATATTTAGATAATTGGGAGTCTGTCGAATGTGTCTCGTGATCTTGGGTTAGTGGGAATGACTAAGACTGTAAACTCATATTTGTTCACCTTATCCTGCCTGCCAATACATGGATTTCAAATCCATCATCAAAAATGTAGATTTTTCTTATTGATATTGTCAGCTCATTCACTGTCTTGGTCATTCCAATTGATTACCTTTCCTCTGCAATTCGGTCTAAGTATAGCTTCTGAATGTGTTTTTTACAAGGTAAATGACCTCATAGTGAGGTGCTTACCATGTCTCTTGTTATCAGATGATATGAATTAGATTCACTGCATGCCTATTGGAAGTTGATTTTATATCTAGATTAATGGCTATGCTCGTTGTTACTCTTAACAATGTGACATTTTTTTTCTGACTTTGGATTTCTTAAGTAACTCTCTTGTATTCTTCTGATCTTATAATTGGTTAAGGAAAAAAAATTCACCAATGCCATGGATATTCTCTCCTCTGTTTGCTAATTGCTATTTAAATTTCATTTTCCTTTTTCACGAGTAATATTATATTCCCTTTTTGTCTGATTTGCGTGAGAGTAACTATTTGGAAATGGGGATGCTAATTATTGGATCCTGTTGATTTCTATCTCGAAGTTAGTTCTTCCTTTTTGCTACATGCCTACATCACCAGCCTACCTGATCATATGTCTAGGTTTCCTTTCTTTTGCCTCCTCCTGCGAAAAAAAGAAAAGAAATTTAACTTCTCAAGCTTTCTCATTGTGTATCAGCATAATTGTTTGTCAAATGCTAGATCTGTTCCTGCATACTTACTTTCCATTCGCTTAATTTACTCTATTAATTTCCCCTTCTTTTTTGAAAGAAAAGAAAGAATCACGTTTTTGGCATGACTGCTGAATTTGCTGAGGCCTTCATTTCTTGTGACAGTTGTTTAATAGACTCTTTGGGACCTATTCTTTGTGTACATTTCTTGACATGCTTACCAATTTATGGAGGTCGAAAACTGAAACTTCTTATCAACCTGCAGGCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTG</genome_strand>
        <mrna_strand>TAAAGTAGTGTTACTGCTCTGGCGGTTGCGTCAAACAGAAGCTGGGCCCAATTACTCCTCCGCATCTACCCAGCCTGCGTCTTCTTTGTTTCCCCTTTTCCGAAATCCGATACCTTAATCAACAACTCTTCAGTCTCTGATTTCCGATAAAACCATGTCTAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATATTAACAGCAACGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGAGAGATAAAGATATTGCAAAACCTCTGTGGTGGACCAAACATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACACTAACAGATTACGACATACGGTACTACATATATGAGCTTCTCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTAGATTATTGCCATTCACAGGGAATAATGCATANGGATGTCAAGCCTCATAACGTTATGATAGATCATGAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E397676" ref_strand="+" ref_description="SGN-E397676 [TUS-46-I16]">
      <seq>gtttttgaaggtataaatgttaacagcagggagaagtgcataatcaagatcctgaaacctgttaagaagaaaaagatcaaaagagagataaagatattgcaaaatctctgtggtggaccaaatattgtcaaactccttgatatcgtcagagatcagcattcaaaaactccaagcttgatttttgagtacgtgaacagcacagatttcaaggttttgtacccaacgctaacaaactatgacatacggtactacatatatgagcttctcaaggcactagattattgccattcgcagggaataatgcacagggatgtcaaacctcagatcgttatgatagaccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="82053" stop="79072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81753" g_stop="81679" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81678" i_stop="81120" i_length="559">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.273" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81119" g_stop="80925" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="270" r_length="195" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80924" i_stop="79445" i_length="1480">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79444" g_stop="79372" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="343" r_length="73" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E397676" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81753" e_stop="81679"/>
          <exon e_start="81119" e_stop="80925"/>
          <exon e_start="79444" e_stop="79372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAGGTAAGATGATAAACACATCAGATGGCAGTCAATATGGCTTTTATGTATTCATGCTCCCTCTCCCCTGATTCTTTTTTTTTTTTTTAAGGAAGGTAACAGTTATATACTTCCTGTCCTCTTGGTCCTCCTTTTCTGTATCTTCTTTCTTCTCTCAGAACCAAGAATAGAGTTGTACTGATGTCTTAACTTACTATCTGGTCAAAACTTTGTTTGTCTCCAACATTTCCTTCTATTGCAGCTTTTCAAGGTTTGTATGAGTATGAGAATTTTGGGAGTCCCCAGTTTTCTTATGCTCAGCAACTATTTCTGAATTGAGTGGATATATTCTCATATACTATGATCAAATTATGAGATCAAACTATCAAAGTTATAACTCCTAGGCTCATCTCAAGTGGAAATTTTGGAATCCAAGATTCTGGTGCCATAAAACTGCACTAATTTGGATTCATCTTATATCTATATTTAGATAATTGGGAGTCTGTCGAATGTGTCTCGTGATCTTGGGTTAGTGGGAATGACTAAGACTGTAAACTCATATTTGTTCACCTTATCCTGCCTGCCAATACATGGATTTCAAATCCATCATCAAAAATGTAGATTTTTCTTATTGATATTGTCAGCTCATTCACTGTCTTGGTCATTCCAATTGATTACCTTTCCTCTGCAATTCGGTCTAAGTATAGCTTCTGAATGTGTTTTTTACAAGGTAAATGACCTCATAGTGAGGTGCTTACCATGTCTCTTGTTATCAGATGATATGAATTAGATTCACTGCATGCCTATTGGAAGTTGATTTTATATCTAGATTAATGGCTATGCTCGTTGTTACTCTTAACAATGTGACATTTTTTTTCTGACTTTGGATTTCTTAAGTAACTCTCTTGTATTCTTCTGATCTTATAATTGGTTAAGGAAAAAAAATTCACCAATGCCATGGATATTCTCTCCTCTGTTTGCTAATTGCTATTTAAATTTCATTTTCCTTTTTCACGAGTAATATTATATTCCCTTTTTGTCTGATTTGCGTGAGAGTAACTATTTGGAAATGGGGATGCTAATTATTGGATCCTGTTGATTTCTATCTCGAAGTTAGTTCTTCCTTTTTGCTACATGCCTACATCACCAGCCTACCTGATCATATGTCTAGGTTTCCTTTCTTTTGCCTCCTCCTGCGAAAAAAAGAAAAGAAATTTAACTTCTCAAGCTTTCTCATTGTGTATCAGCATAATTGTTTGTCAAATGCTAGATCTGTTCCTGCATACTTACTTTCCATTCGCTTAATTTACTCTATTAATTTCCCCTTCTTTTTTGAAAGAAAAGAAAGAATCACGTTTTTGGCATGACTGCTGAATTTGCTGAGGCCTTCATTTCTTGTGACAGTTGTTTAATAGACTCTTTGGGACCTATTCTTTGTGTACATTTCTTGACATGCTTACCAATTTATGGAGGTCGAAAACTGAAACTTCTTATCAACCTGCAGGCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATG</genome_strand>
        <mrna_strand>GTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAAACTATGACATACGGTACTACATATATGAGCTTCTCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTAGATTATTGCCATTCGCAGGGAATAATGCACAGGGATGTCAAACCTCAGATCGTTATGATAGACCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E315527" ref_strand="+" ref_description="SGN-E315527 [cTOA-22-C11]">
      <seq>aagagagagcaaaaagctttcccaatctatggctttttcctaaaaatggtgtgtgagtaaagtagtgttattgctctggcggttgcatcaaacagaagcggggcccaattccttcgttgcatctacccagcctgcgtcttctttgttgtcccttttccgaaatccgatacctttatcaataactcttcagtctctgatttccggataaaccatgtccaaagctcgagtatacaccgatatcaatgtgcttcgtcctagggaatattgggattacgaatcgctaactgttcaatggggtgatcaggatgactatgaggttgttcgaaaagttggaagaggaaaatacagtgaagtttttgaaggtataaatgttaacagcagggagaagtgcataatcaagatcctgaaacctgttaagaagaaaaagatcaaaagagagataaagatattgcaaaatctctgtggtggaccaaatattgtcaaactccttgatatcgtcagagatcagcattcaaaaactccaagcttgatttttgagtacgtgaacagcacagatttcaaggttttgtacccaacgctaacagactatgacatacggtactacatatatgagcttctcaaggcactagattattgccattcacagggaataatgcacagggatgtcaaacctcataacgttatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="83581" stop="79080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83281" g_stop="82985" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82984" i_stop="81809" i_length="1176">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81808" g_stop="81679" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="427" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81678" i_stop="81120" i_length="559">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.273" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81119" g_stop="80925" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="622" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80924" i_stop="79445" i_length="1480">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79444" g_stop="79380" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="687" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E315527" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315527" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83281" e_stop="82985"/>
          <exon e_start="81808" e_stop="81679"/>
          <exon e_start="81119" e_stop="80925"/>
          <exon e_start="79444" e_stop="79380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGGGTAAATATTTTCCCTTATTTAACCCTAATCGCTTTTGATTTTGTTTTTAGTTTTGGGGGTTTGTATACTGGATAATAGATTGAAATTCTTGAATTAGATGCTGTTTATTACCTTTTTTTAAAAAGATTGTTTGGTAAAATAATAACATCCACTTCTAGCATCCAAGAAAATAGTTTTTGCTTATGTTTCCTTGTTTTTTCCGTCTGAAGTAAAAAGTGGGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGGTATGTTTCCTTGTTTTTTTCGTCTGAAAGAAAAGTGGGTGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGTTATGTTTCCTTTTTTAAAGATAAGTGGAGGTTACATAGCATTGTAACATCCACTCCAGGGGTGGGTGAAACCTGAAAACAAATGTTGGGTTTCTTATTCCTATTTTTTGTCTAATAGATAATTGTGTGATCAGTGTTAGATGCTATTTTGGCGAATTCCTGCTATCTTGAATGGAATGACTTTCACATTGGAAAATACCTATTGGGTTAATGCAAAACTCCTGTCTAGTCTTGTTGAACTGAGTCTGTATTTTGTGGCTCCAGATTAGGTTGGGCTTCAAGTCTTTATATGTTTGTTACTTCTATATTAGCTTCCACATGATACAATGGAAGCTAAATAACAAATATAATATACCAATTAGTTGAGTTATATACCAATTTGTTGAGTTTAAGGATTGGTCCTGCTGGTGCACATTTGGACTGAAGTAAATGTTTGTGTAAGTCTTGTAATAAGAGTGAGATTTACAACCCGTTGTGTTAAAAGTTGAATTATTGAATACTTGAATGGAACAGCCCCGAAGTGGAGTGGATAATTATAGAGGCTTCATTTAGTTGACACCAGTTAGTTTATTTTTGTTATTGTATAGTTCTGCTGCATTTATCAAGATGAGAGCATTTTGTGTAACAAGAACTATATAAATGTCTTGCTAAAGTGGGAGAATATAGTTTGTTAATCTTGGTTCTAGAGTACCTTGACCCTTGGCTCAACGATTAGTTTTATCTTACACAAGTATTGGTTTCAGATATGATTCTATTTGACTTACTCAACTTTAATGCACCAGCTACATTGTATTATCCTCACTAGTGCATGTCATATTTATTATTGTAGTGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAGGTAAGATGATAAACACATCAGATGGCAGTCAATATGGCTTTTATGTATTCATGCTCCCTCTCCCCTGATTCTTTTTTTTTTTTTTAAGGAAGGTAACAGTTATATACTTCCTGTCCTCTTGGTCCTCCTTTTCTGTATCTTCTTTCTTCTCTCAGAACCAAGAATAGAGTTGTACTGATGTCTTAACTTACTATCTGGTCAAAACTTTGTTTGTCTCCAACATTTCCTTCTATTGCAGCTTTTCAAGGTTTGTATGAGTATGAGAATTTTGGGAGTCCCCAGTTTTCTTATGCTCAGCAACTATTTCTGAATTGAGTGGATATATTCTCATATACTATGATCAAATTATGAGATCAAACTATCAAAGTTATAACTCCTAGGCTCATCTCAAGTGGAAATTTTGGAATCCAAGATTCTGGTGCCATAAAACTGCACTAATTTGGATTCATCTTATATCTATATTTAGATAATTGGGAGTCTGTCGAATGTGTCTCGTGATCTTGGGTTAGTGGGAATGACTAAGACTGTAAACTCATATTTGTTCACCTTATCCTGCCTGCCAATACATGGATTTCAAATCCATCATCAAAAATGTAGATTTTTCTTATTGATATTGTCAGCTCATTCACTGTCTTGGTCATTCCAATTGATTACCTTTCCTCTGCAATTCGGTCTAAGTATAGCTTCTGAATGTGTTTTTTACAAGGTAAATGACCTCATAGTGAGGTGCTTACCATGTCTCTTGTTATCAGATGATATGAATTAGATTCACTGCATGCCTATTGGAAGTTGATTTTATATCTAGATTAATGGCTATGCTCGTTGTTACTCTTAACAATGTGACATTTTTTTTCTGACTTTGGATTTCTTAAGTAACTCTCTTGTATTCTTCTGATCTTATAATTGGTTAAGGAAAAAAAATTCACCAATGCCATGGATATTCTCTCCTCTGTTTGCTAATTGCTATTTAAATTTCATTTTCCTTTTTCACGAGTAATATTATATTCCCTTTTTGTCTGATTTGCGTGAGAGTAACTATTTGGAAATGGGGATGCTAATTATTGGATCCTGTTGATTTCTATCTCGAAGTTAGTTCTTCCTTTTTGCTACATGCCTACATCACCAGCCTACCTGATCATATGTCTAGGTTTCCTTTCTTTTGCCTCCTCCTGCGAAAAAAAGAAAAGAAATTTAACTTCTCAAGCTTTCTCATTGTGTATCAGCATAATTGTTTGTCAAATGCTAGATCTGTTCCTGCATACTTACTTTCCATTCGCTTAATTTACTCTATTAATTTCCCCTTCTTTTTTGAAAGAAAAGAAAGAATCACGTTTTTGGCATGACTGCTGAATTTGCTGAGGCCTTCATTTCTTGTGACAGTTGTTTAATAGACTCTTTGGGACCTATTCTTTGTGTACATTTCTTGACATGCTTACCAATTTATGGAGGTCGAAAACTGAAACTTCTTATCAACCTGCAGGCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGAT</genome_strand>
        <mrna_strand>AAGAGAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E334421" ref_strand="+" ref_description="SGN-E334421 [cTOD-23-A23]">
      <seq>aatagcagcatacaagagagagcaaaaagctttcccaatctatggctttttcctaaaaatggtgtgtgagtaaagtagtgttattgctctggcggttgcatcaaacagaagcggggcccaattccttcgttgcatctacccagcctgcgtcttctttgttgtcccttttccgaaatccgatacctttatcaataactcttcagtctctgatttccggataaaccatgtccaaagctcgagtatacaccgatatcaatgtgcttcgtcctagggaatattgggattacgaatcgctaactgttcaatgggggatgactatgaggttgttcgaaaagttggaagaggaaaatacagtgaagtttttgaaggtataaatgttaacagcagggagaagtgcataatcaagatcctgaaacctgttaagaagaaaaagcggtatcgtgtagatcaaaagagagataaagatattgcaaaatctctgtggtggaccaaatattgtcaaactccttgatatcgtcagagatcagcattcaaaaactccaagcttgatttttgagtacgtgaacagcacagatttcaaggttttgtacccaacgctaacagactatgacatacggtactacatatatgagcttctcaaggtaagatgataaacacatcagatggcagtcaatatggcttttatgtattcatgctccctctcccctgattcttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="83594" stop="80541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83294" g_stop="82985" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82984" i_stop="81802" i_length="1183">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81801" g_stop="81679" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="433" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81678" i_stop="81133" i_length="546">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.361" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81132" g_stop="80841" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="725" r_length="292" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E334421" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83294" e_stop="82985"/>
          <exon e_start="81801" e_stop="81679"/>
          <exon e_start="81132" e_stop="80841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAGCAGCATACAAGAGAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGGGTAAATATTTTCCCTTATTTAACCCTAATCGCTTTTGATTTTGTTTTTAGTTTTGGGGGTTTGTATACTGGATAATAGATTGAAATTCTTGAATTAGATGCTGTTTATTACCTTTTTTTAAAAAGATTGTTTGGTAAAATAATAACATCCACTTCTAGCATCCAAGAAAATAGTTTTTGCTTATGTTTCCTTGTTTTTTCCGTCTGAAGTAAAAAGTGGGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGGTATGTTTCCTTGTTTTTTTCGTCTGAAAGAAAAGTGGGTGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGTTATGTTTCCTTTTTTAAAGATAAGTGGAGGTTACATAGCATTGTAACATCCACTCCAGGGGTGGGTGAAACCTGAAAACAAATGTTGGGTTTCTTATTCCTATTTTTTGTCTAATAGATAATTGTGTGATCAGTGTTAGATGCTATTTTGGCGAATTCCTGCTATCTTGAATGGAATGACTTTCACATTGGAAAATACCTATTGGGTTAATGCAAAACTCCTGTCTAGTCTTGTTGAACTGAGTCTGTATTTTGTGGCTCCAGATTAGGTTGGGCTTCAAGTCTTTATATGTTTGTTACTTCTATATTAGCTTCCACATGATACAATGGAAGCTAAATAACAAATATAATATACCAATTAGTTGAGTTATATACCAATTTGTTGAGTTTAAGGATTGGTCCTGCTGGTGCACATTTGGACTGAAGTAAATGTTTGTGTAAGTCTTGTAATAAGAGTGAGATTTACAACCCGTTGTGTTAAAAGTTGAATTATTGAATACTTGAATGGAACAGCCCCGAAGTGGAGTGGATAATTATAGAGGCTTCATTTAGTTGACACCAGTTAGTTTATTTTTGTTATTGTATAGTTCTGCTGCATTTATCAAGATGAGAGCATTTTGTGTAACAAGAACTATATAAATGTCTTGCTAAAGTGGGAGAATATAGTTTGTTAATCTTGGTTCTAGAGTACCTTGACCCTTGGCTCAACGATTAGTTTTATCTTACACAAGTATTGGTTTCAGATATGATTCTATTTGACTTACTCAACTTTAATGCACCAGCTACATTGTATTATCCTCACTAGTGCATGTCATATTTATTATTGTAGTGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAGGTAAGATGATAAACACATCAGATGGCAGTCAATATGGCTTTTATGTATTCATGCTCCCTCTCCCCTGATTCTTTTTTTTTTTTT</genome_strand>
        <mrna_strand>AATAGCAGCATACAAGAGAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAGGTAAGATGATAAACACATCAGATGGCAGTCAATATGGCTTTTATGTATTCATGCTCCCTCTCCCCTGATTCTTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E257497" ref_strand="+" ref_description="SGN-E257497 [cLEG-45-A9]">
      <seq>tgaaaagggtcccaatagcagcatacaagagagagcaaaaagctttcccaatctatggctttttcctaaaaatggtgtgtgagtaaagtagtgttattgctctggcggttgcatcaaacagaagcggggcccaattccttcgttgcatctacccagcctgcgtcttctttgttgtcccttttccgaaatccgatacctttatcaataactcttcagtctctgatttccggataaaccatgtccaaagctcgagtatacaccgatatcaatgtgcttcgtcctagggaatattgggattacgaatcgctaactgttcaatggggtgatcaggatgactatgaggttgttcgaaaagttggaagaggaaaatacagtgaagtttttgaaggtataaatgttaacagcagggagaagtgcataatcaagatcctgaaacctgttaagaagaaaaagatcnaaagagagataaagatattgcaaaatctctgtggtggaccaaatattgtcaaactccttgatatcgtcagagatcagcattcaaaaactccaagcttgatttttgagtacgtgaacagcacagatttcaaggttttgtacccaacgctaacagactatgacatacggtactacatatatgagcttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="83607" stop="80629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83307" g_stop="82985" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="323" r_length="323" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82984" i_stop="81809" i_length="1176">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81808" g_stop="81679" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="453" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81678" i_stop="81120" i_length="559">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.273" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81119" g_stop="80929" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="644" r_length="191" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E257497" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83307" e_stop="82985"/>
          <exon e_start="81808" e_stop="81679"/>
          <exon e_start="81119" e_stop="80929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAAGGGTCCCAATAGCAGCATACAAGAGAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGGGTAAATATTTTCCCTTATTTAACCCTAATCGCTTTTGATTTTGTTTTTAGTTTTGGGGGTTTGTATACTGGATAATAGATTGAAATTCTTGAATTAGATGCTGTTTATTACCTTTTTTTAAAAAGATTGTTTGGTAAAATAATAACATCCACTTCTAGCATCCAAGAAAATAGTTTTTGCTTATGTTTCCTTGTTTTTTCCGTCTGAAGTAAAAAGTGGGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGGTATGTTTCCTTGTTTTTTTCGTCTGAAAGAAAAGTGGGTGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGTTATGTTTCCTTTTTTAAAGATAAGTGGAGGTTACATAGCATTGTAACATCCACTCCAGGGGTGGGTGAAACCTGAAAACAAATGTTGGGTTTCTTATTCCTATTTTTTGTCTAATAGATAATTGTGTGATCAGTGTTAGATGCTATTTTGGCGAATTCCTGCTATCTTGAATGGAATGACTTTCACATTGGAAAATACCTATTGGGTTAATGCAAAACTCCTGTCTAGTCTTGTTGAACTGAGTCTGTATTTTGTGGCTCCAGATTAGGTTGGGCTTCAAGTCTTTATATGTTTGTTACTTCTATATTAGCTTCCACATGATACAATGGAAGCTAAATAACAAATATAATATACCAATTAGTTGAGTTATATACCAATTTGTTGAGTTTAAGGATTGGTCCTGCTGGTGCACATTTGGACTGAAGTAAATGTTTGTGTAAGTCTTGTAATAAGAGTGAGATTTACAACCCGTTGTGTTAAAAGTTGAATTATTGAATACTTGAATGGAACAGCCCCGAAGTGGAGTGGATAATTATAGAGGCTTCATTTAGTTGACACCAGTTAGTTTATTTTTGTTATTGTATAGTTCTGCTGCATTTATCAAGATGAGAGCATTTTGTGTAACAAGAACTATATAAATGTCTTGCTAAAGTGGGAGAATATAGTTTGTTAATCTTGGTTCTAGAGTACCTTGACCCTTGGCTCAACGATTAGTTTTATCTTACACAAGTATTGGTTTCAGATATGATTCTATTTGACTTACTCAACTTTAATGCACCAGCTACATTGTATTATCCTCACTAGTGCATGTCATATTTATTATTGTAGTGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCT</genome_strand>
        <mrna_strand>TGAAAAGGGTCCCAATAGCAGCATACAAGAGAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCNAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E346286" ref_strand="+" ref_description="SGN-E346286 [cTOF-23-L13]">
      <seq>gagagcaaaaagctttcccaatctatggctttttcctaaaaatggtgtgtgagtaaagtagtgttattgctctggcggttgcatcaaacagaagcggggcccaattccttcgttgcatctacccagcctgcgtcttctttgttgtcccttttccgaaatccgatacctttatcaataactcttcagtctctgatttccggataaaccatgtccaaagctcgagtatacaccgatatcaatgtgcttcgtcctagggaatattgggattacgaatcgctaactgttcaatggggtgatcaggatgactatgaggttgttcgaaaagttggaagaggaaaatacagtgaagtttttgaaggtataaatgttaacagcagggagaagtgcataatcaagatcctgaaacctgttaagaagaaaaagatcaaaagagagataaagatattgcaaaatctctgtggtggaccaaatattgtcaaactccttgatatcgtcagagatcagcattcaaaaactccaagcttgatttttgagtacgtgaacagcacagatttcaaggttttgtacccaacgctaacagactatgacatacggtactacatatatgagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="83577" stop="80632"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83277" g_stop="82985" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82984" i_stop="81809" i_length="1176">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81808" g_stop="81679" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="423" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81678" i_stop="81120" i_length="559">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.273" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81119" g_stop="80932" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="611" r_length="188" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E346286" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83277" e_stop="82985"/>
          <exon e_start="81808" e_stop="81679"/>
          <exon e_start="81119" e_stop="80932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGGGTAAATATTTTCCCTTATTTAACCCTAATCGCTTTTGATTTTGTTTTTAGTTTTGGGGGTTTGTATACTGGATAATAGATTGAAATTCTTGAATTAGATGCTGTTTATTACCTTTTTTTAAAAAGATTGTTTGGTAAAATAATAACATCCACTTCTAGCATCCAAGAAAATAGTTTTTGCTTATGTTTCCTTGTTTTTTCCGTCTGAAGTAAAAAGTGGGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGGTATGTTTCCTTGTTTTTTTCGTCTGAAAGAAAAGTGGGTGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGTTATGTTTCCTTTTTTAAAGATAAGTGGAGGTTACATAGCATTGTAACATCCACTCCAGGGGTGGGTGAAACCTGAAAACAAATGTTGGGTTTCTTATTCCTATTTTTTGTCTAATAGATAATTGTGTGATCAGTGTTAGATGCTATTTTGGCGAATTCCTGCTATCTTGAATGGAATGACTTTCACATTGGAAAATACCTATTGGGTTAATGCAAAACTCCTGTCTAGTCTTGTTGAACTGAGTCTGTATTTTGTGGCTCCAGATTAGGTTGGGCTTCAAGTCTTTATATGTTTGTTACTTCTATATTAGCTTCCACATGATACAATGGAAGCTAAATAACAAATATAATATACCAATTAGTTGAGTTATATACCAATTTGTTGAGTTTAAGGATTGGTCCTGCTGGTGCACATTTGGACTGAAGTAAATGTTTGTGTAAGTCTTGTAATAAGAGTGAGATTTACAACCCGTTGTGTTAAAAGTTGAATTATTGAATACTTGAATGGAACAGCCCCGAAGTGGAGTGGATAATTATAGAGGCTTCATTTAGTTGACACCAGTTAGTTTATTTTTGTTATTGTATAGTTCTGCTGCATTTATCAAGATGAGAGCATTTTGTGTAACAAGAACTATATAAATGTCTTGCTAAAGTGGGAGAATATAGTTTGTTAATCTTGGTTCTAGAGTACCTTGACCCTTGGCTCAACGATTAGTTTTATCTTACACAAGTATTGGTTTCAGATATGATTCTATTTGACTTACTCAACTTTAATGCACCAGCTACATTGTATTATCCTCACTAGTGCATGTCATATTTATTATTGTAGTGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCT</genome_strand>
        <mrna_strand>GAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E480408" ref_strand="+" ref_description="SGN-E480408 [cSTD-13-F16]">
      <seq>gtaaagtagtgttactgctctggcggttgcgtcaaacagaagctgggcccaattactcctccgcatctacccagcctgcgtcttctttgtgtccccttttccgaaatccgataccttaatcaacaactcttcagtctctgatttccgataaaaccatgtctaaagctcgagtatacaccgatatcaatgtgcttcgtcctagggaatattgggattacgaatcgctaactgttcaatggggtgatcaggatgactatgaggttgttcgaaaagttggaagaggaaaatacagtgaagtttttgaaggtataaatgttaacagcaacgagaagtgcataatcaagatcctgaaacctgttaagaagaaaaagatcaaaagagagataaagatattgcaaaacctctgtggtggaccaaacattgtcaaactccttgatatcgtcagagatcagcattcaaaaactccaagcttgatttttgagtacgtgaacagcacagatttcaaggttttgtacccaacgctaacagattacgacatacggtactacatatatgagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="83463" stop="80632"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83225" g_stop="82985" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82984" i_stop="81809" i_length="1176">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81808" g_stop="81679" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="371" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81678" i_stop="81120" i_length="559">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.273" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81119" g_stop="80932" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="559" r_length="188" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E480408" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E480408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83225" e_stop="82985"/>
          <exon e_start="81808" e_stop="81679"/>
          <exon e_start="81119" e_stop="80932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGGGTAAATATTTTCCCTTATTTAACCCTAATCGCTTTTGATTTTGTTTTTAGTTTTGGGGGTTTGTATACTGGATAATAGATTGAAATTCTTGAATTAGATGCTGTTTATTACCTTTTTTTAAAAAGATTGTTTGGTAAAATAATAACATCCACTTCTAGCATCCAAGAAAATAGTTTTTGCTTATGTTTCCTTGTTTTTTCCGTCTGAAGTAAAAAGTGGGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGGTATGTTTCCTTGTTTTTTTCGTCTGAAAGAAAAGTGGGTGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGTTATGTTTCCTTTTTTAAAGATAAGTGGAGGTTACATAGCATTGTAACATCCACTCCAGGGGTGGGTGAAACCTGAAAACAAATGTTGGGTTTCTTATTCCTATTTTTTGTCTAATAGATAATTGTGTGATCAGTGTTAGATGCTATTTTGGCGAATTCCTGCTATCTTGAATGGAATGACTTTCACATTGGAAAATACCTATTGGGTTAATGCAAAACTCCTGTCTAGTCTTGTTGAACTGAGTCTGTATTTTGTGGCTCCAGATTAGGTTGGGCTTCAAGTCTTTATATGTTTGTTACTTCTATATTAGCTTCCACATGATACAATGGAAGCTAAATAACAAATATAATATACCAATTAGTTGAGTTATATACCAATTTGTTGAGTTTAAGGATTGGTCCTGCTGGTGCACATTTGGACTGAAGTAAATGTTTGTGTAAGTCTTGTAATAAGAGTGAGATTTACAACCCGTTGTGTTAAAAGTTGAATTATTGAATACTTGAATGGAACAGCCCCGAAGTGGAGTGGATAATTATAGAGGCTTCATTTAGTTGACACCAGTTAGTTTATTTTTGTTATTGTATAGTTCTGCTGCATTTATCAAGATGAGAGCATTTTGTGTAACAAGAACTATATAAATGTCTTGCTAAAGTGGGAGAATATAGTTTGTTAATCTTGGTTCTAGAGTACCTTGACCCTTGGCTCAACGATTAGTTTTATCTTACACAAGTATTGGTTTCAGATATGATTCTATTTGACTTACTCAACTTTAATGCACCAGCTACATTGTATTATCCTCACTAGTGCATGTCATATTTATTATTGTAGTGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCT</genome_strand>
        <mrna_strand>GTAAAGTAGTGTTACTGCTCTGGCGGTTGCGTCAAACAGAAGCTGGGCCCAATTACTCCTCCGCATCTACCCAGCCTGCGTCTTCTTTGTGTCCCCTTTTCCGAAATCCGATACCTTAATCAACAACTCTTCAGTCTCTGATTTCCGATAAAACCATGTCTAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAACGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGAGAGATAAAGATATTGCAAAACCTCTGTGGTGGACCAAACATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGATTACGACATACGGTACTACATATATGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E321071" ref_strand="+" ref_description="SGN-E321071 [cTOB-13-E3]">
      <seq>aaaaagctttcccaatctatggctttttcctaaaaatggtgtgtgagtaaagtagtgttattgctctggcggttgcatcaaacagaagcggggcccaattccttcgttgcatctacccagcctgcgtcttctttgttgtcccttttccgaaatccgatacctttatcaataactcttcagtctctgatttccggataaaccatgtccaaagctcgagtatacaccgatatcaatgtgcttcgtcctagggaatattgggattacgaatcgctaactgttcaatggggtgatcaggatgactatgaggttgttcgaaaagttggaagaggaaaatacagtgaagtttttgaaggtataaatgttaacagcagggagaagtgcataatcaagatcctgaaacctgttaagaagaaaaagatcaaaagagagataaagatattgcaaaatctctgtggtggaccaaatattgtcaaactccttgatatcgtcagagatcagcattcaaaaactccaagcttgatttttgagtacgtgaacagcacagatttcaaggttttgtacccaacgctaacagactatgacatacggtactacatatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="83571" stop="80637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83271" g_stop="82985" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82984" i_stop="81809" i_length="1176">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81808" g_stop="81679" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="417" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81678" i_stop="81120" i_length="559">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.273" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81119" g_stop="80937" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="600" r_length="183" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E321071" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83271" e_stop="82985"/>
          <exon e_start="81808" e_stop="81679"/>
          <exon e_start="81119" e_stop="80937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGGGTAAATATTTTCCCTTATTTAACCCTAATCGCTTTTGATTTTGTTTTTAGTTTTGGGGGTTTGTATACTGGATAATAGATTGAAATTCTTGAATTAGATGCTGTTTATTACCTTTTTTTAAAAAGATTGTTTGGTAAAATAATAACATCCACTTCTAGCATCCAAGAAAATAGTTTTTGCTTATGTTTCCTTGTTTTTTCCGTCTGAAGTAAAAAGTGGGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGGTATGTTTCCTTGTTTTTTTCGTCTGAAAGAAAAGTGGGTGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGTTATGTTTCCTTTTTTAAAGATAAGTGGAGGTTACATAGCATTGTAACATCCACTCCAGGGGTGGGTGAAACCTGAAAACAAATGTTGGGTTTCTTATTCCTATTTTTTGTCTAATAGATAATTGTGTGATCAGTGTTAGATGCTATTTTGGCGAATTCCTGCTATCTTGAATGGAATGACTTTCACATTGGAAAATACCTATTGGGTTAATGCAAAACTCCTGTCTAGTCTTGTTGAACTGAGTCTGTATTTTGTGGCTCCAGATTAGGTTGGGCTTCAAGTCTTTATATGTTTGTTACTTCTATATTAGCTTCCACATGATACAATGGAAGCTAAATAACAAATATAATATACCAATTAGTTGAGTTATATACCAATTTGTTGAGTTTAAGGATTGGTCCTGCTGGTGCACATTTGGACTGAAGTAAATGTTTGTGTAAGTCTTGTAATAAGAGTGAGATTTACAACCCGTTGTGTTAAAAGTTGAATTATTGAATACTTGAATGGAACAGCCCCGAAGTGGAGTGGATAATTATAGAGGCTTCATTTAGTTGACACCAGTTAGTTTATTTTTGTTATTGTATAGTTCTGCTGCATTTATCAAGATGAGAGCATTTTGTGTAACAAGAACTATATAAATGTCTTGCTAAAGTGGGAGAATATAGTTTGTTAATCTTGGTTCTAGAGTACCTTGACCCTTGGCTCAACGATTAGTTTTATCTTACACAAGTATTGGTTTCAGATATGATTCTATTTGACTTACTCAACTTTAATGCACCAGCTACATTGTATTATCCTCACTAGTGCATGTCATATTTATTATTGTAGTGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATAT</genome_strand>
        <mrna_strand>AAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E306626" ref_strand="+" ref_description="SGN-E306626 [cLEY-19-A14]">
      <seq>tacaagagatagcaaaaagctttgccaatctatggctttttcctaaaaatggtgtgtgagtaaagtagtgttattgctctggcggttgcatcaaacagaagcggggcccaattccttcgttgcatctacccagcctgcgtcttctttgttgtcccttttccgaaatccgatacctttatcaataactcttcagtctctgatttccggataaaccatgtccaaagctcgagtatacaccgatatcaatgtgcttcgtcctagggaatattgggattacgaatcgctaactgttcaatggggtgatcaggatgactatgaggttgttcgaaaagttggaagaggaaaatacagtgaagtttttgaaggtataaatgttaacagcagggagaagtgcataatcaagatcctgaaacctgttaagaagaaaaagatcaaaagagagataaagatattgcaaaatctctgtggtggaccaaatattgtcaaactccttgatatcgtcagagatcagcattcaaaaactccaagcttgatttttgagtacgtgaacagcacagatttcaaggttttgtacccaacgctaacagactatgacatacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="83584" stop="80650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83284" g_stop="82985" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82984" i_stop="81809" i_length="1176">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81808" g_stop="81679" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="430" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81678" i_stop="81120" i_length="559">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.273" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81119" g_stop="80950" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="600" r_length="170" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E306626" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83284" e_stop="82985"/>
          <exon e_start="81808" e_stop="81679"/>
          <exon e_start="81119" e_stop="80950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAAGAGAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGGGTAAATATTTTCCCTTATTTAACCCTAATCGCTTTTGATTTTGTTTTTAGTTTTGGGGGTTTGTATACTGGATAATAGATTGAAATTCTTGAATTAGATGCTGTTTATTACCTTTTTTTAAAAAGATTGTTTGGTAAAATAATAACATCCACTTCTAGCATCCAAGAAAATAGTTTTTGCTTATGTTTCCTTGTTTTTTCCGTCTGAAGTAAAAAGTGGGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGGTATGTTTCCTTGTTTTTTTCGTCTGAAAGAAAAGTGGGTGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGTTATGTTTCCTTTTTTAAAGATAAGTGGAGGTTACATAGCATTGTAACATCCACTCCAGGGGTGGGTGAAACCTGAAAACAAATGTTGGGTTTCTTATTCCTATTTTTTGTCTAATAGATAATTGTGTGATCAGTGTTAGATGCTATTTTGGCGAATTCCTGCTATCTTGAATGGAATGACTTTCACATTGGAAAATACCTATTGGGTTAATGCAAAACTCCTGTCTAGTCTTGTTGAACTGAGTCTGTATTTTGTGGCTCCAGATTAGGTTGGGCTTCAAGTCTTTATATGTTTGTTACTTCTATATTAGCTTCCACATGATACAATGGAAGCTAAATAACAAATATAATATACCAATTAGTTGAGTTATATACCAATTTGTTGAGTTTAAGGATTGGTCCTGCTGGTGCACATTTGGACTGAAGTAAATGTTTGTGTAAGTCTTGTAATAAGAGTGAGATTTACAACCCGTTGTGTTAAAAGTTGAATTATTGAATACTTGAATGGAACAGCCCCGAAGTGGAGTGGATAATTATAGAGGCTTCATTTAGTTGACACCAGTTAGTTTATTTTTGTTATTGTATAGTTCTGCTGCATTTATCAAGATGAGAGCATTTTGTGTAACAAGAACTATATAAATGTCTTGCTAAAGTGGGAGAATATAGTTTGTTAATCTTGGTTCTAGAGTACCTTGACCCTTGGCTCAACGATTAGTTTTATCTTACACAAGTATTGGTTTCAGATATGATTCTATTTGACTTACTCAACTTTAATGCACCAGCTACATTGTATTATCCTCACTAGTGCATGTCATATTTATTATTGTAGTGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACG</genome_strand>
        <mrna_strand>TACAAGAGATAGCAAAAAGCTTTGCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E359227" ref_strand="+" ref_description="SGN-E359227 [cLHT-11-D16]">
      <seq>aaaaagctttcccaatatatggctttttcctaaaaatggtgtgtgagtaaagtagtgttattgctctggcggttgcgtcaaacagaagcggggcccaattcctcctccgcatctacccagcctgcgtctcctttgttgccccttttccgaaatccgataccttaatcaacaactcttcagtctctgatttccggataaaccatgtctaaagctcgagtatacaccgacatcaatgtgcttcgtcctagggaatattgggattacgaatcgctaactgttcaatggggtgatcaggatgactatgaggttgttcggaaagttggaagaggaaaatacagtgaagtttttgaaggtataaatgttaacagcagggagaagtgcataatcaagatcctgaaacctgttaagaagaaaaagatcaaaagagagataaagatattgcaaaatctctgtggtggaccaaatattgtcaaactccttgatatcgtcagagatcagcattcaaaaactccaagcttgatttttgagtacgtgaatagcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="83571" stop="80694"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83271" g_stop="82985" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82984" i_stop="81809" i_length="1176">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81808" g_stop="81679" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="417" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81678" i_stop="81120" i_length="559">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.273" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81119" g_stop="80994" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="543" r_length="126" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E359227" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83271" e_stop="82985"/>
          <exon e_start="81808" e_stop="81679"/>
          <exon e_start="81119" e_stop="80994"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGGGTAAATATTTTCCCTTATTTAACCCTAATCGCTTTTGATTTTGTTTTTAGTTTTGGGGGTTTGTATACTGGATAATAGATTGAAATTCTTGAATTAGATGCTGTTTATTACCTTTTTTTAAAAAGATTGTTTGGTAAAATAATAACATCCACTTCTAGCATCCAAGAAAATAGTTTTTGCTTATGTTTCCTTGTTTTTTCCGTCTGAAGTAAAAAGTGGGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGGTATGTTTCCTTGTTTTTTTCGTCTGAAAGAAAAGTGGGTGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGTTATGTTTCCTTTTTTAAAGATAAGTGGAGGTTACATAGCATTGTAACATCCACTCCAGGGGTGGGTGAAACCTGAAAACAAATGTTGGGTTTCTTATTCCTATTTTTTGTCTAATAGATAATTGTGTGATCAGTGTTAGATGCTATTTTGGCGAATTCCTGCTATCTTGAATGGAATGACTTTCACATTGGAAAATACCTATTGGGTTAATGCAAAACTCCTGTCTAGTCTTGTTGAACTGAGTCTGTATTTTGTGGCTCCAGATTAGGTTGGGCTTCAAGTCTTTATATGTTTGTTACTTCTATATTAGCTTCCACATGATACAATGGAAGCTAAATAACAAATATAATATACCAATTAGTTGAGTTATATACCAATTTGTTGAGTTTAAGGATTGGTCCTGCTGGTGCACATTTGGACTGAAGTAAATGTTTGTGTAAGTCTTGTAATAAGAGTGAGATTTACAACCCGTTGTGTTAAAAGTTGAATTATTGAATACTTGAATGGAACAGCCCCGAAGTGGAGTGGATAATTATAGAGGCTTCATTTAGTTGACACCAGTTAGTTTATTTTTGTTATTGTATAGTTCTGCTGCATTTATCAAGATGAGAGCATTTTGTGTAACAAGAACTATATAAATGTCTTGCTAAAGTGGGAGAATATAGTTTGTTAATCTTGGTTCTAGAGTACCTTGACCCTTGGCTCAACGATTAGTTTTATCTTACACAAGTATTGGTTTCAGATATGATTCTATTTGACTTACTCAACTTTAATGCACCAGCTACATTGTATTATCCTCACTAGTGCATGTCATATTTATTATTGTAGTGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACA</genome_strand>
        <mrna_strand>AAAAAGCTTTCCCAATATATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCGTCAAACAGAAGCGGGGCCCAATTCCTCCTCCGCATCTACCCAGCCTGCGTCTCCTTTGTTGCCCCTTTTCCGAAATCCGATACCTTAATCAACAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCTAAAGCTCGAGTATACACCGACATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAATAGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E266393" ref_strand="+" ref_description="SGN-E266393 [cLEI-3-K16]">
      <seq>agcaaaaagctttcccaatctatggctttttcctaaaaatggtgtgtgagtaaagtagtgttattgctctggcggttgcatcaaacagaagcggggcccaattccttcgttgcatctacccagcctgcgtcttctttgttgtcccttttccgaaatccgatacctttatcaataactcttcagtctctgatttccggataaaccatgtccaaagctcgagtatacaccgatatcaatgtgcttcgtcctagggaatattgggattacgaatcgctaactgttcaatggggtgatcaggatgactatgaggttgttcgaaaagttggaagaggaaaatacagtgaagtttttgaaggtataaatgttaacagcagggagaagtgcataatcaagatcctgaaacctgttaagaagaaaaagatcaaaagagagataaagatattgcaaaatctctgtggtggaccaaatattgtcaaactccttgatatcgtcagagatcagcattcaaaaactccaagcttgatttttgagtacgtgaacagcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="83574" stop="80695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83274" g_stop="82985" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82984" i_stop="81809" i_length="1176">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81808" g_stop="81679" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="420" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81678" i_stop="81120" i_length="559">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.273" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81119" g_stop="80995" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="545" r_length="125" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E266393" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83274" e_stop="82985"/>
          <exon e_start="81808" e_stop="81679"/>
          <exon e_start="81119" e_stop="80995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGGGTAAATATTTTCCCTTATTTAACCCTAATCGCTTTTGATTTTGTTTTTAGTTTTGGGGGTTTGTATACTGGATAATAGATTGAAATTCTTGAATTAGATGCTGTTTATTACCTTTTTTTAAAAAGATTGTTTGGTAAAATAATAACATCCACTTCTAGCATCCAAGAAAATAGTTTTTGCTTATGTTTCCTTGTTTTTTCCGTCTGAAGTAAAAAGTGGGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGGTATGTTTCCTTGTTTTTTTCGTCTGAAAGAAAAGTGGGTGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGTTATGTTTCCTTTTTTAAAGATAAGTGGAGGTTACATAGCATTGTAACATCCACTCCAGGGGTGGGTGAAACCTGAAAACAAATGTTGGGTTTCTTATTCCTATTTTTTGTCTAATAGATAATTGTGTGATCAGTGTTAGATGCTATTTTGGCGAATTCCTGCTATCTTGAATGGAATGACTTTCACATTGGAAAATACCTATTGGGTTAATGCAAAACTCCTGTCTAGTCTTGTTGAACTGAGTCTGTATTTTGTGGCTCCAGATTAGGTTGGGCTTCAAGTCTTTATATGTTTGTTACTTCTATATTAGCTTCCACATGATACAATGGAAGCTAAATAACAAATATAATATACCAATTAGTTGAGTTATATACCAATTTGTTGAGTTTAAGGATTGGTCCTGCTGGTGCACATTTGGACTGAAGTAAATGTTTGTGTAAGTCTTGTAATAAGAGTGAGATTTACAACCCGTTGTGTTAAAAGTTGAATTATTGAATACTTGAATGGAACAGCCCCGAAGTGGAGTGGATAATTATAGAGGCTTCATTTAGTTGACACCAGTTAGTTTATTTTTGTTATTGTATAGTTCTGCTGCATTTATCAAGATGAGAGCATTTTGTGTAACAAGAACTATATAAATGTCTTGCTAAAGTGGGAGAATATAGTTTGTTAATCTTGGTTCTAGAGTACCTTGACCCTTGGCTCAACGATTAGTTTTATCTTACACAAGTATTGGTTTCAGATATGATTCTATTTGACTTACTCAACTTTAATGCACCAGCTACATTGTATTATCCTCACTAGTGCATGTCATATTTATTATTGTAGTGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCAC</genome_strand>
        <mrna_strand>AGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E300790" ref_strand="+" ref_description="SGN-E300790 [cLEW-8-A2]">
      <seq>agagagcaaaaagctttcccaatctatggctttttcctaaaaatggtgtgtgagtaaagtagtgttattgctctggcggttgcatcaaacagaagcggggcccaattccttcgttgcatctacccaacctgcgtcttctttgttgtcccttttccgaaatccgatacctttatcaataactcttcagtctctgatttccggataaaccatgtccaaagctcgagtatacaccgatatcaatgtgcttcgtcctagggaatattgggattacgaatcgctaactgttcaatggggtgatcaggatgactatgaggttgttcgaaaagttggaagaggaaaatacagtgaagtttttgaaggtataaatgttaacagcagggagaagtgcataatcaagatcctgaaacctgtttagaagaaaaagatcaaaagagagataaagatgttgcaaaatctctgtggtggaccaaatattgtcaaactccttgatatcgtcagagatcatcattcaaaaactccaagcttgatttttgagtacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="83578" stop="80705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83278" g_stop="82985" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82984" i_stop="81809" i_length="1176">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81808" g_stop="81679" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="424" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81678" i_stop="81120" i_length="559">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.273" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81119" g_stop="81005" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="539" r_length="115" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E300790" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83278" e_stop="82985"/>
          <exon e_start="81808" e_stop="81679"/>
          <exon e_start="81119" e_stop="81005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGGGTAAATATTTTCCCTTATTTAACCCTAATCGCTTTTGATTTTGTTTTTAGTTTTGGGGGTTTGTATACTGGATAATAGATTGAAATTCTTGAATTAGATGCTGTTTATTACCTTTTTTTAAAAAGATTGTTTGGTAAAATAATAACATCCACTTCTAGCATCCAAGAAAATAGTTTTTGCTTATGTTTCCTTGTTTTTTCCGTCTGAAGTAAAAAGTGGGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGGTATGTTTCCTTGTTTTTTTCGTCTGAAAGAAAAGTGGGTGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGTTATGTTTCCTTTTTTAAAGATAAGTGGAGGTTACATAGCATTGTAACATCCACTCCAGGGGTGGGTGAAACCTGAAAACAAATGTTGGGTTTCTTATTCCTATTTTTTGTCTAATAGATAATTGTGTGATCAGTGTTAGATGCTATTTTGGCGAATTCCTGCTATCTTGAATGGAATGACTTTCACATTGGAAAATACCTATTGGGTTAATGCAAAACTCCTGTCTAGTCTTGTTGAACTGAGTCTGTATTTTGTGGCTCCAGATTAGGTTGGGCTTCAAGTCTTTATATGTTTGTTACTTCTATATTAGCTTCCACATGATACAATGGAAGCTAAATAACAAATATAATATACCAATTAGTTGAGTTATATACCAATTTGTTGAGTTTAAGGATTGGTCCTGCTGGTGCACATTTGGACTGAAGTAAATGTTTGTGTAAGTCTTGTAATAAGAGTGAGATTTACAACCCGTTGTGTTAAAAGTTGAATTATTGAATACTTGAATGGAACAGCCCCGAAGTGGAGTGGATAATTATAGAGGCTTCATTTAGTTGACACCAGTTAGTTTATTTTTGTTATTGTATAGTTCTGCTGCATTTATCAAGATGAGAGCATTTTGTGTAACAAGAACTATATAAATGTCTTGCTAAAGTGGGAGAATATAGTTTGTTAATCTTGGTTCTAGAGTACCTTGACCCTTGGCTCAACGATTAGTTTTATCTTACACAAGTATTGGTTTCAGATATGATTCTATTTGACTTACTCAACTTTAATGCACCAGCTACATTGTATTATCCTCACTAGTGCATGTCATATTTATTATTGTAGTGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACG</genome_strand>
        <mrna_strand>AGAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAACCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTTAGAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGAGAGATAAAGATGTTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCATCATTCAAAAACTCCAAGCTTGATTTTTGAGTACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E300806" ref_strand="+" ref_description="SGN-E300806 [cLEW-8-E20]">
      <seq>aaaagctttcccaatctatggctttttcctaaaaatggtgtgtgagtaaagtcgtgttattgctctggcggatgcatcaaacagaagcggggcccaattccttcgttgcatctacccagcctgcgtcttctttgttgtcccttttccgaaatccgatacctttatcaataactcttcagtctctgatttccggataaaccatgtccaaagctcgagtatacaccgatatcaatgtgcttcgtcctagggaatattgggattacgaatcgctaactgttcaatggggtgatcaggatgactatgaggttgttcgaaaagttggaagaggaaaatacagtgaagtttttgaaggtataaatgttaacagcagggagaagtgcataatcaagatcctgaaacctgtttagaagaataagatcaaacgagagataaagatattgcaaaatctctgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="83570" stop="80783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83270" g_stop="82985" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82984" i_stop="81809" i_length="1176">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81808" g_stop="81679" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="416" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81678" i_stop="81120" i_length="559">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.273" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81119" g_stop="81083" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="453" r_length="37" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E300806" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83270" e_stop="82985"/>
          <exon e_start="81808" e_stop="81679"/>
          <exon e_start="81119" e_stop="81083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGGGTAAATATTTTCCCTTATTTAACCCTAATCGCTTTTGATTTTGTTTTTAGTTTTGGGGGTTTGTATACTGGATAATAGATTGAAATTCTTGAATTAGATGCTGTTTATTACCTTTTTTTAAAAAGATTGTTTGGTAAAATAATAACATCCACTTCTAGCATCCAAGAAAATAGTTTTTGCTTATGTTTCCTTGTTTTTTCCGTCTGAAGTAAAAAGTGGGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGGTATGTTTCCTTGTTTTTTTCGTCTGAAAGAAAAGTGGGTGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGTTATGTTTCCTTTTTTAAAGATAAGTGGAGGTTACATAGCATTGTAACATCCACTCCAGGGGTGGGTGAAACCTGAAAACAAATGTTGGGTTTCTTATTCCTATTTTTTGTCTAATAGATAATTGTGTGATCAGTGTTAGATGCTATTTTGGCGAATTCCTGCTATCTTGAATGGAATGACTTTCACATTGGAAAATACCTATTGGGTTAATGCAAAACTCCTGTCTAGTCTTGTTGAACTGAGTCTGTATTTTGTGGCTCCAGATTAGGTTGGGCTTCAAGTCTTTATATGTTTGTTACTTCTATATTAGCTTCCACATGATACAATGGAAGCTAAATAACAAATATAATATACCAATTAGTTGAGTTATATACCAATTTGTTGAGTTTAAGGATTGGTCCTGCTGGTGCACATTTGGACTGAAGTAAATGTTTGTGTAAGTCTTGTAATAAGAGTGAGATTTACAACCCGTTGTGTTAAAAGTTGAATTATTGAATACTTGAATGGAACAGCCCCGAAGTGGAGTGGATAATTATAGAGGCTTCATTTAGTTGACACCAGTTAGTTTATTTTTGTTATTGTATAGTTCTGCTGCATTTATCAAGATGAGAGCATTTTGTGTAACAAGAACTATATAAATGTCTTGCTAAAGTGGGAGAATATAGTTTGTTAATCTTGGTTCTAGAGTACCTTGACCCTTGGCTCAACGATTAGTTTTATCTTACACAAGTATTGGTTTCAGATATGATTCTATTTGACTTACTCAACTTTAATGCACCAGCTACATTGTATTATCCTCACTAGTGCATGTCATATTTATTATTGTAGTGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTG</genome_strand>
        <mrna_strand>AAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTCGTGTTATTGCTCTGGCGGATGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTTAGAAGAATAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAACGAGAGATAAAGATATTGCAAAATCTCTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E299917" ref_strand="+" ref_description="SGN-E299917 [cLEW-1-P12]">
      <seq>ctgtggagagtgaaaagggtcccaatagcagcatacaagagagagcaaaaagctttcccaatctatggctttttcctaaaaatggtgtgtgagtaaagtagtgttattgctctggcggttgcatcaaacagaagcggggcccaattccttcgttgcatctacccagcctgcgtcttctttgttgtcccttttccgaaatccgatacctttatcaataactcttcagtctctgatttccggataaaccatgtccaaagctcgagtatacaccgatatcaatgtgcttcgtcctagggaatattgggattacgaatcgctaactgttcaatggggtgatcaggatgactatgaggttgttcgaaaagttggaagaggaaaatacagtgaagtttttgaaggtataaatgttaacagcagggagaagtgcataatcaagatcctgaaacctgttaagaagaaaaagatcaaaagagagataaagatattgcaaaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="83617" stop="80788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83317" g_stop="82985" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82984" i_stop="81809" i_length="1176">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81808" g_stop="81679" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="463" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81678" i_stop="81120" i_length="559">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.273" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81119" g_stop="81088" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="495" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E299917" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299917" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83317" e_stop="82985"/>
          <exon e_start="81808" e_stop="81679"/>
          <exon e_start="81119" e_stop="81088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTGGAGAGTGAAAAGGGTCCCAATAGCAGCATACAAGAGAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGGGTAAATATTTTCCCTTATTTAACCCTAATCGCTTTTGATTTTGTTTTTAGTTTTGGGGGTTTGTATACTGGATAATAGATTGAAATTCTTGAATTAGATGCTGTTTATTACCTTTTTTTAAAAAGATTGTTTGGTAAAATAATAACATCCACTTCTAGCATCCAAGAAAATAGTTTTTGCTTATGTTTCCTTGTTTTTTCCGTCTGAAGTAAAAAGTGGGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGGTATGTTTCCTTGTTTTTTTCGTCTGAAAGAAAAGTGGGTGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGTTATGTTTCCTTTTTTAAAGATAAGTGGAGGTTACATAGCATTGTAACATCCACTCCAGGGGTGGGTGAAACCTGAAAACAAATGTTGGGTTTCTTATTCCTATTTTTTGTCTAATAGATAATTGTGTGATCAGTGTTAGATGCTATTTTGGCGAATTCCTGCTATCTTGAATGGAATGACTTTCACATTGGAAAATACCTATTGGGTTAATGCAAAACTCCTGTCTAGTCTTGTTGAACTGAGTCTGTATTTTGTGGCTCCAGATTAGGTTGGGCTTCAAGTCTTTATATGTTTGTTACTTCTATATTAGCTTCCACATGATACAATGGAAGCTAAATAACAAATATAATATACCAATTAGTTGAGTTATATACCAATTTGTTGAGTTTAAGGATTGGTCCTGCTGGTGCACATTTGGACTGAAGTAAATGTTTGTGTAAGTCTTGTAATAAGAGTGAGATTTACAACCCGTTGTGTTAAAAGTTGAATTATTGAATACTTGAATGGAACAGCCCCGAAGTGGAGTGGATAATTATAGAGGCTTCATTTAGTTGACACCAGTTAGTTTATTTTTGTTATTGTATAGTTCTGCTGCATTTATCAAGATGAGAGCATTTTGTGTAACAAGAACTATATAAATGTCTTGCTAAAGTGGGAGAATATAGTTTGTTAATCTTGGTTCTAGAGTACCTTGACCCTTGGCTCAACGATTAGTTTTATCTTACACAAGTATTGGTTTCAGATATGATTCTATTTGACTTACTCAACTTTAATGCACCAGCTACATTGTATTATCCTCACTAGTGCATGTCATATTTATTATTGTAGTGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCT</genome_strand>
        <mrna_strand>CTGTGGAGAGTGAAAAGGGTCCCAATAGCAGCATACAAGAGAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGAGAGATAAAGATATTGCAAAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E307875" ref_strand="+" ref_description="SGN-E307875 [cLEY-20-C2]">
      <seq>gagcaaaaagctttcccaatctatggctttttcctaaaaatggtgtgtgagtaaagtagtgttattgctctggcggttgcatcaaacagaagcggggcccaattccttcgttgcatctacccagcctgcgtcttctttgttgtcccttttccgaaatccgatacctttatcaataactcttcagtctctgatttccggataaaccatgtccaaagctcgagtatacaccgatatcaatgtgcttcgtcctagggaatattgggattacgaatcgctaactgttcaatggggtgatcaggatgactatgaggttgttcgaaaagttggaagaggaaaatacagtgaagtttttgaaggtataaatgttaacagcagggagaagtgcataatcaagatcctgaaacctgttaagaagaaaaagatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="83575" stop="81377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83275" g_stop="82985" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82984" i_stop="81809" i_length="1176">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81808" g_stop="81679" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="421" r_length="130" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E307875" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83275" e_stop="82985"/>
          <exon e_start="81808" e_stop="81679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGGGTAAATATTTTCCCTTATTTAACCCTAATCGCTTTTGATTTTGTTTTTAGTTTTGGGGGTTTGTATACTGGATAATAGATTGAAATTCTTGAATTAGATGCTGTTTATTACCTTTTTTTAAAAAGATTGTTTGGTAAAATAATAACATCCACTTCTAGCATCCAAGAAAATAGTTTTTGCTTATGTTTCCTTGTTTTTTCCGTCTGAAGTAAAAAGTGGGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGGTATGTTTCCTTGTTTTTTTCGTCTGAAAGAAAAGTGGGTGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGTTATGTTTCCTTTTTTAAAGATAAGTGGAGGTTACATAGCATTGTAACATCCACTCCAGGGGTGGGTGAAACCTGAAAACAAATGTTGGGTTTCTTATTCCTATTTTTTGTCTAATAGATAATTGTGTGATCAGTGTTAGATGCTATTTTGGCGAATTCCTGCTATCTTGAATGGAATGACTTTCACATTGGAAAATACCTATTGGGTTAATGCAAAACTCCTGTCTAGTCTTGTTGAACTGAGTCTGTATTTTGTGGCTCCAGATTAGGTTGGGCTTCAAGTCTTTATATGTTTGTTACTTCTATATTAGCTTCCACATGATACAATGGAAGCTAAATAACAAATATAATATACCAATTAGTTGAGTTATATACCAATTTGTTGAGTTTAAGGATTGGTCCTGCTGGTGCACATTTGGACTGAAGTAAATGTTTGTGTAAGTCTTGTAATAAGAGTGAGATTTACAACCCGTTGTGTTAAAAGTTGAATTATTGAATACTTGAATGGAACAGCCCCGAAGTGGAGTGGATAATTATAGAGGCTTCATTTAGTTGACACCAGTTAGTTTATTTTTGTTATTGTATAGTTCTGCTGCATTTATCAAGATGAGAGCATTTTGTGTAACAAGAACTATATAAATGTCTTGCTAAAGTGGGAGAATATAGTTTGTTAATCTTGGTTCTAGAGTACCTTGACCCTTGGCTCAACGATTAGTTTTATCTTACACAAGTATTGGTTTCAGATATGATTCTATTTGACTTACTCAACTTTAATGCACCAGCTACATTGTATTATCCTCACTAGTGCATGTCATATTTATTATTGTAGTGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG</genome_strand>
        <mrna_strand>GAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E330170" ref_strand="+" ref_description="SGN-E330170 [cTOD-5-J10]">
      <seq>aaaaagctttcccaatctatggctttttcctaaaaatggtgtgtgagtaaagtagtgttattgctctggcggttgcatcaaacagaagcggggcccaattccttcgttgcatctacccagcctgcgtcttctttgttgtcccttttccgaaatccgatacctttatcaataactcttcagtctctgatttccggataaaccatgtccaaagctcgagtatacaccgatatcaatgtgcttcgtcctaaggaatattgggattacgaatcgctaactgttcaatggggtgatcaggatgactatgaggttgttcgaaaagttggaagaggaaaatacagtgaagtttttgaaggtataaatgttaacagcagggagaagtgcataatcaagatcctgaaacctgttaagaagaaaaagatcaaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="83571" stop="81377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83271" g_stop="82985" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82984" i_stop="81809" i_length="1176">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81808" g_stop="81679" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="417" r_length="130" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E330170" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83271" e_stop="82985"/>
          <exon e_start="81808" e_stop="81679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGGGTAAATATTTTCCCTTATTTAACCCTAATCGCTTTTGATTTTGTTTTTAGTTTTGGGGGTTTGTATACTGGATAATAGATTGAAATTCTTGAATTAGATGCTGTTTATTACCTTTTTTTAAAAAGATTGTTTGGTAAAATAATAACATCCACTTCTAGCATCCAAGAAAATAGTTTTTGCTTATGTTTCCTTGTTTTTTCCGTCTGAAGTAAAAAGTGGGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGGTATGTTTCCTTGTTTTTTTCGTCTGAAAGAAAAGTGGGTGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGTTATGTTTCCTTTTTTAAAGATAAGTGGAGGTTACATAGCATTGTAACATCCACTCCAGGGGTGGGTGAAACCTGAAAACAAATGTTGGGTTTCTTATTCCTATTTTTTGTCTAATAGATAATTGTGTGATCAGTGTTAGATGCTATTTTGGCGAATTCCTGCTATCTTGAATGGAATGACTTTCACATTGGAAAATACCTATTGGGTTAATGCAAAACTCCTGTCTAGTCTTGTTGAACTGAGTCTGTATTTTGTGGCTCCAGATTAGGTTGGGCTTCAAGTCTTTATATGTTTGTTACTTCTATATTAGCTTCCACATGATACAATGGAAGCTAAATAACAAATATAATATACCAATTAGTTGAGTTATATACCAATTTGTTGAGTTTAAGGATTGGTCCTGCTGGTGCACATTTGGACTGAAGTAAATGTTTGTGTAAGTCTTGTAATAAGAGTGAGATTTACAACCCGTTGTGTTAAAAGTTGAATTATTGAATACTTGAATGGAACAGCCCCGAAGTGGAGTGGATAATTATAGAGGCTTCATTTAGTTGACACCAGTTAGTTTATTTTTGTTATTGTATAGTTCTGCTGCATTTATCAAGATGAGAGCATTTTGTGTAACAAGAACTATATAAATGTCTTGCTAAAGTGGGAGAATATAGTTTGTTAATCTTGGTTCTAGAGTACCTTGACCCTTGGCTCAACGATTAGTTTTATCTTACACAAGTATTGGTTTCAGATATGATTCTATTTGACTTACTCAACTTTAATGCACCAGCTACATTGTATTATCCTCACTAGTGCATGTCATATTTATTATTGTAGTGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG</genome_strand>
        <mrna_strand>AAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAAGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E480193" ref_strand="+" ref_description="SGN-E480193 [cSTD-13-G21]">
      <seq>gtaaagtagtgttactgctctggcggttgcgtcaaacagaagctgggcccaattactcctccgcatctacccagcctgcgtcttctttgtgtccccttttccgaaatccgataccttaatcaacaactcttcagtctctgatttccgataaaaccatgtctaaagctcgagtatacaccgatatcaatgtgcttcgtcctagggaatattgggattacgaatcgctaactgttcaatggggtgatcaggatgactatgaggttgttcgaaaagttggaagaggaaaatacagtgaagtttttgaaggtataaatgttaacagcaacgagaagtgcataatcaagatcctgaaacctgttaagaagaaaaagatcaaaagagaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="83463" stop="81377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83225" g_stop="82985" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82984" i_stop="81809" i_length="1176">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81808" g_stop="81679" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="371" r_length="130" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E480193" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E480193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83225" e_stop="82985"/>
          <exon e_start="81808" e_stop="81679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGGGTAAATATTTTCCCTTATTTAACCCTAATCGCTTTTGATTTTGTTTTTAGTTTTGGGGGTTTGTATACTGGATAATAGATTGAAATTCTTGAATTAGATGCTGTTTATTACCTTTTTTTAAAAAGATTGTTTGGTAAAATAATAACATCCACTTCTAGCATCCAAGAAAATAGTTTTTGCTTATGTTTCCTTGTTTTTTCCGTCTGAAGTAAAAAGTGGGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGGTATGTTTCCTTGTTTTTTTCGTCTGAAAGAAAAGTGGGTGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGTTATGTTTCCTTTTTTAAAGATAAGTGGAGGTTACATAGCATTGTAACATCCACTCCAGGGGTGGGTGAAACCTGAAAACAAATGTTGGGTTTCTTATTCCTATTTTTTGTCTAATAGATAATTGTGTGATCAGTGTTAGATGCTATTTTGGCGAATTCCTGCTATCTTGAATGGAATGACTTTCACATTGGAAAATACCTATTGGGTTAATGCAAAACTCCTGTCTAGTCTTGTTGAACTGAGTCTGTATTTTGTGGCTCCAGATTAGGTTGGGCTTCAAGTCTTTATATGTTTGTTACTTCTATATTAGCTTCCACATGATACAATGGAAGCTAAATAACAAATATAATATACCAATTAGTTGAGTTATATACCAATTTGTTGAGTTTAAGGATTGGTCCTGCTGGTGCACATTTGGACTGAAGTAAATGTTTGTGTAAGTCTTGTAATAAGAGTGAGATTTACAACCCGTTGTGTTAAAAGTTGAATTATTGAATACTTGAATGGAACAGCCCCGAAGTGGAGTGGATAATTATAGAGGCTTCATTTAGTTGACACCAGTTAGTTTATTTTTGTTATTGTATAGTTCTGCTGCATTTATCAAGATGAGAGCATTTTGTGTAACAAGAACTATATAAATGTCTTGCTAAAGTGGGAGAATATAGTTTGTTAATCTTGGTTCTAGAGTACCTTGACCCTTGGCTCAACGATTAGTTTTATCTTACACAAGTATTGGTTTCAGATATGATTCTATTTGACTTACTCAACTTTAATGCACCAGCTACATTGTATTATCCTCACTAGTGCATGTCATATTTATTATTGTAGTGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG</genome_strand>
        <mrna_strand>GTAAAGTAGTGTTACTGCTCTGGCGGTTGCGTCAAACAGAAGCTGGGCCCAATTACTCCTCCGCATCTACCCAGCCTGCGTCTTCTTTGTGTCCCCTTTTCCGAAATCCGATACCTTAATCAACAACTCTTCAGTCTCTGATTTCCGATAAAACCATGTCTAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAACGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E232914" ref_strand="+" ref_description="SGN-E232914 [cLED-8-J2]">
      <seq>tcccaatagcagcatacaagagagagcaaaaagctttcccaatctatggctttttcctaaaaatggtgtgtgagtaaagtagtgttattgctctggcggttgcatcaaacagaagcggggcccaattccttcgttgcatctacccagcctgcgtcttctttgttgtcccttttccgaaatccgatacctttatcaataactcttcagtctctgatttccggataaaccatgtccaaagctcgagtatacaccgatatcaatgtgcttcgtcctagggaatattgggattacgaatcgctaactgttcaatggggtgatcaggatgactatgaggttgttcgaaaagttggaagaggaaaatacagngaagtttttgaaggtataaatgttaacagcagggagaagtgcataatcaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="83598" stop="81404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83298" g_stop="82985" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82984" i_stop="81809" i_length="1176">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81808" g_stop="81704" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="419" r_length="105" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E232914" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83298" e_stop="82985"/>
          <exon e_start="81808" e_stop="81704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCAATAGCAGCATACAAGAGAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGGGTAAATATTTTCCCTTATTTAACCCTAATCGCTTTTGATTTTGTTTTTAGTTTTGGGGGTTTGTATACTGGATAATAGATTGAAATTCTTGAATTAGATGCTGTTTATTACCTTTTTTTAAAAAGATTGTTTGGTAAAATAATAACATCCACTTCTAGCATCCAAGAAAATAGTTTTTGCTTATGTTTCCTTGTTTTTTCCGTCTGAAGTAAAAAGTGGGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGGTATGTTTCCTTGTTTTTTTCGTCTGAAAGAAAAGTGGGTGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGTTATGTTTCCTTTTTTAAAGATAAGTGGAGGTTACATAGCATTGTAACATCCACTCCAGGGGTGGGTGAAACCTGAAAACAAATGTTGGGTTTCTTATTCCTATTTTTTGTCTAATAGATAATTGTGTGATCAGTGTTAGATGCTATTTTGGCGAATTCCTGCTATCTTGAATGGAATGACTTTCACATTGGAAAATACCTATTGGGTTAATGCAAAACTCCTGTCTAGTCTTGTTGAACTGAGTCTGTATTTTGTGGCTCCAGATTAGGTTGGGCTTCAAGTCTTTATATGTTTGTTACTTCTATATTAGCTTCCACATGATACAATGGAAGCTAAATAACAAATATAATATACCAATTAGTTGAGTTATATACCAATTTGTTGAGTTTAAGGATTGGTCCTGCTGGTGCACATTTGGACTGAAGTAAATGTTTGTGTAAGTCTTGTAATAAGAGTGAGATTTACAACCCGTTGTGTTAAAAGTTGAATTATTGAATACTTGAATGGAACAGCCCCGAAGTGGAGTGGATAATTATAGAGGCTTCATTTAGTTGACACCAGTTAGTTTATTTTTGTTATTGTATAGTTCTGCTGCATTTATCAAGATGAGAGCATTTTGTGTAACAAGAACTATATAAATGTCTTGCTAAAGTGGGAGAATATAGTTTGTTAATCTTGGTTCTAGAGTACCTTGACCCTTGGCTCAACGATTAGTTTTATCTTACACAAGTATTGGTTTCAGATATGATTCTATTTGACTTACTCAACTTTAATGCACCAGCTACATTGTATTATCCTCACTAGTGCATGTCATATTTATTATTGTAGTGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGAT</genome_strand>
        <mrna_strand>TCCCAATAGCAGCATACAAGAGAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGNGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E279335" ref_strand="-" ref_description="SGN-E279335 [cLEL-4-D22](-)">
      <seq>gcacgagaaaaagctttcccaatctatggctttttcctaaaaatggtgtgtgagtaaagtagtgttattgctctggcggttgcatcaaacagaagcggggcccaattccttcgttgcatctacccagcctgcgtcttctttgttgtcccttttccgaaatccgatacctttatcaataactcttcagtctctgatttccggataaaccatgtccaaagctcgagtatacaccgatatcaatgtgcttcgtcctagggaatattgggattacgaatcgctaactgttcaatggggtgatcaggatgactatgaggttgttcgaaaagttggaagaggaaaatacatggaagtttttgaaggtataaaatgttaacagcaggaanaaagtgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="83575" stop="81413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83279" g_stop="82985" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82984" i_stop="81809" i_length="1176">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81808" g_stop="81713" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="392" r_length="98" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E279335" ref_strand="-">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279335" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="83279" e_stop="82985"/>
          <exon e_start="81808" e_stop="81713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGGGTAAATATTTTCCCTTATTTAACCCTAATCGCTTTTGATTTTGTTTTTAGTTTTGGGGGTTTGTATACTGGATAATAGATTGAAATTCTTGAATTAGATGCTGTTTATTACCTTTTTTTAAAAAGATTGTTTGGTAAAATAATAACATCCACTTCTAGCATCCAAGAAAATAGTTTTTGCTTATGTTTCCTTGTTTTTTCCGTCTGAAGTAAAAAGTGGGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGGTATGTTTCCTTGTTTTTTTCGTCTGAAAGAAAAGTGGGTGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGTTATGTTTCCTTTTTTAAAGATAAGTGGAGGTTACATAGCATTGTAACATCCACTCCAGGGGTGGGTGAAACCTGAAAACAAATGTTGGGTTTCTTATTCCTATTTTTTGTCTAATAGATAATTGTGTGATCAGTGTTAGATGCTATTTTGGCGAATTCCTGCTATCTTGAATGGAATGACTTTCACATTGGAAAATACCTATTGGGTTAATGCAAAACTCCTGTCTAGTCTTGTTGAACTGAGTCTGTATTTTGTGGCTCCAGATTAGGTTGGGCTTCAAGTCTTTATATGTTTGTTACTTCTATATTAGCTTCCACATGATACAATGGAAGCTAAATAACAAATATAATATACCAATTAGTTGAGTTATATACCAATTTGTTGAGTTTAAGGATTGGTCCTGCTGGTGCACATTTGGACTGAAGTAAATGTTTGTGTAAGTCTTGTAATAAGAGTGAGATTTACAACCCGTTGTGTTAAAAGTTGAATTATTGAATACTTGAATGGAACAGCCCCGAAGTGGAGTGGATAATTATAGAGGCTTCATTTAGTTGACACCAGTTAGTTTATTTTTGTTATTGTATAGTTCTGCTGCATTTATCAAGATGAGAGCATTTTGTGTAACAAGAACTATATAAATGTCTTGCTAAAGTGGGAGAATATAGTTTGTTAATCTTGGTTCTAGAGTACCTTGACCCTTGGCTCAACGATTAGTTTTATCTTACACAAGTATTGGTTTCAGATATGATTCTATTTGACTTACTCAACTTTAATGCACCAGCTACATTGTATTATCCTCACTAGTGCATGTCATATTTATTATTGTAGTGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTAT-AAATGTTAACAGCAGGGAG-AAGTGCAT</genome_strand>
        <mrna_strand>GCACGAG-AAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACATGGAAGTTTTTGAAGGTATAAAATGTTAACAGCAGGAANAAAGTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E711070" ref_strand="+" ref_description="SGN-E711070 [FA57DF11]">
      <seq>agtgaaaagggtcccaatagcagcatacaagagagagcaaaaagctttcccaatctatggctttttcctaaaaatggtgtgtgagtaaagtagtgttattgctctggcggttgcatcaaacagaagcggggcccaattccttcgttgcatctacccagcctgcgtcttctttgttgtcccttttccgaaatccgatacctttatcaataactcttcagcctctgatttccggataaaccatgtccaaagctcgagtatacaccgatatcaatgtgcttcgtcctagggaatattgggattacgaatcgctaactgttcaatggggtgatcacgatgactatgacgctgttccaaaagctggaagaggaaaatacagcgaagtttttgaaggtataaatgttaacagcagggagaagtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="83609" stop="81415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83309" g_stop="82985" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82984" i_stop="81809" i_length="1176">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81808" g_stop="81715" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="419" r_length="94" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E711070" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83309" e_stop="82985"/>
          <exon e_start="81808" e_stop="81715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGAAAAGGGTCCCAATAGCAGCATACAAGAGAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGGGTAAATATTTTCCCTTATTTAACCCTAATCGCTTTTGATTTTGTTTTTAGTTTTGGGGGTTTGTATACTGGATAATAGATTGAAATTCTTGAATTAGATGCTGTTTATTACCTTTTTTTAAAAAGATTGTTTGGTAAAATAATAACATCCACTTCTAGCATCCAAGAAAATAGTTTTTGCTTATGTTTCCTTGTTTTTTCCGTCTGAAGTAAAAAGTGGGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGGTATGTTTCCTTGTTTTTTTCGTCTGAAAGAAAAGTGGGTGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGTTATGTTTCCTTTTTTAAAGATAAGTGGAGGTTACATAGCATTGTAACATCCACTCCAGGGGTGGGTGAAACCTGAAAACAAATGTTGGGTTTCTTATTCCTATTTTTTGTCTAATAGATAATTGTGTGATCAGTGTTAGATGCTATTTTGGCGAATTCCTGCTATCTTGAATGGAATGACTTTCACATTGGAAAATACCTATTGGGTTAATGCAAAACTCCTGTCTAGTCTTGTTGAACTGAGTCTGTATTTTGTGGCTCCAGATTAGGTTGGGCTTCAAGTCTTTATATGTTTGTTACTTCTATATTAGCTTCCACATGATACAATGGAAGCTAAATAACAAATATAATATACCAATTAGTTGAGTTATATACCAATTTGTTGAGTTTAAGGATTGGTCCTGCTGGTGCACATTTGGACTGAAGTAAATGTTTGTGTAAGTCTTGTAATAAGAGTGAGATTTACAACCCGTTGTGTTAAAAGTTGAATTATTGAATACTTGAATGGAACAGCCCCGAAGTGGAGTGGATAATTATAGAGGCTTCATTTAGTTGACACCAGTTAGTTTATTTTTGTTATTGTATAGTTCTGCTGCATTTATCAAGATGAGAGCATTTTGTGTAACAAGAACTATATAAATGTCTTGCTAAAGTGGGAGAATATAGTTTGTTAATCTTGGTTCTAGAGTACCTTGACCCTTGGCTCAACGATTAGTTTTATCTTACACAAGTATTGGTTTCAGATATGATTCTATTTGACTTACTCAACTTTAATGCACCAGCTACATTGTATTATCCTCACTAGTGCATGTCATATTTATTATTGTAGTGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGC</genome_strand>
        <mrna_strand>AGTGAAAAGGGTCCCAATAGCAGCATACAAGAGAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGCCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCACGATGACTATGACGCTGTTCCAAAAGCTGGAAGAGGAAAATACAGCGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E243453" ref_strand="+" ref_description="SGN-E243453 [cLED-34-M10]">
      <seq>tcccaatagcagcatacaagagagagcaaaaagctttcccaatctatggctttttcctaaaaatggtgtgtgagtaaagtagtgttattgctctggcggttgcatcaaacagaagcggggcccaattccttcgttgcatctacccagcctgcgtcttctttgttgtcccttttccgaaatccgatacctttatcaataactcttcagtctctgatttccggataaaccatgtccaaagctcgagtatacaccgatatcaatgtgcttcgtcctagggaatattgggattacgaatcgctaactgttcaatggggtgatcaggatgacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="-" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="83598" stop="82677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83298" g_stop="82985" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="-" ref_id="SGN-E243453" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>314</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243453" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83298" e_stop="82985"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCAATAGCAGCATACAAGAGAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG</genome_strand>
        <mrna_strand>TCCCAATAGCAGCATACAAGAGAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E314538" ref_strand="+" ref_description="SGN-E314538 [cTOA-20-E7]">
      <seq>ataggttttgctaattcaaccaagaaaatagtttaattatgtaggaaagatcttaatatgatgtgaaaatgacattcctggaggagcctattgacgtcctacaccagctattcattattgacaattgccgtagctatcatttgtcagacaaatttcagtggatatgctttcagtctgagactattacctagccaggtctagggtccaattaatccgtactagctttgaactaacattgcaaaacttgtcttcacccttctactggtggatttgggttatagggcaggtgcgatcacacctactttggatacaattgggaacaataacaattaaagtatcaagaaacgaaattcgatatcagctggtttgatatgtaccccgatggttttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="89944" stop="90935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90244" g_stop="90635" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E314538" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90244" e_stop="90635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGGTTTTGCTAATTCAACCAAGAAAATAGTTTAATTATGTAGGAAAGATCTTAATATGATGTGAAAATGACATTCCTGGAGGAGCCTATTGACGTCCTACACCAGCTATTCATTATTGACAATTGCCGTAGCTATCATTTGTCAGACAAATTTCAGTGGATATGCTTTCAGTCTGAGACTATTACCTAGCCAGGTCTAGGGTCCAATTAATCCGTACTAGCTTTGAACTAACATTGCAAAACTTGTCTTCACCCTTCTACTGGTGGATTTGGGTTATAGGGCAGGTGCGATCACACCTACTTTGGATACAATTGGGAACAATAACAATTAAAGTATCAAGAAACGAAATTCGATATCAGCTGGTTTGATATGTACCCCGATGGTTTTTTG</genome_strand>
        <mrna_strand>ATAGGTTTTGCTAATTCAACCAAGAAAATAGTTTAATTATGTAGGAAAGATCTTAATATGATGTGAAAATGACATTCCTGGAGGAGCCTATTGACGTCCTACACCAGCTATTCATTATTGACAATTGCCGTAGCTATCATTTGTCAGACAAATTTCAGTGGATATGCTTTCAGTCTGAGACTATTACCTAGCCAGGTCTAGGGTCCAATTAATCCGTACTAGCTTTGAACTAACATTGCAAAACTTGTCTTCACCCTTCTACTGGTGGATTTGGGTTATAGGGCAGGTGCGATCACACCTACTTTGGATACAATTGGGAACAATAACAATTAAAGTATCAAGAAACGAAATTCGATATCAGCTGGTTTGATATGTACCCCGATGGTTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E208806" ref_strand="+" ref_description="SGN-E208806 [cLEC-51-H20]">
      <seq>gaacttacagaagcaaagaaaatggcaacaaacatgtctttctattgtttgcttcattaggaaatagtttaagggaaaacgaatgaacatggttaaggcccgtaaaagactcgatcacccatggtggatgacatgttgatcttgataatgaacaaccttctactctaaacagtatgtccactaaaaaggagcttcttttctctgctacaaagaggacctctcaatggattttctcccaggagatcccaagtgatgtgactgtaaatgccgcaggaatctcctttacactacacaagttcccattagtttcaaagagtggatacataaggaagttggtctcggaatccaatgatgctgacgtttctacgatcgaaatccctgatatacctggtggaggagaggcatttgaatttgcagcaaagttttgttatggaataaattttgagataagcacaagaaacattgccttgctgagatgtgcagcagaatatcttgagatgacagaagactatgcagttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="90786" stop="92403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91086" g_stop="91311" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91312" i_stop="91430" i_length="119">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91431" g_stop="91500" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="296" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91501" i_stop="91879" i_length="379">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91880" g_stop="92103" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="520" r_length="224" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E208806" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91086" e_stop="91311"/>
          <exon e_start="91431" e_stop="91500"/>
          <exon e_start="91880" e_stop="92103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTTACAGAAGCAAAGAAAATGGCAACAAACATGTCTTTCTATTGTTTGCTTCATTAGGAAATAGTTTAAGGGAAAACGAATGAACATGGTTAAGGCCCGTAAAAGACTCGATCACCCATGGTGGATGACATGTTGATCTTGATAATGAACAACCTTCTACTCTAAACAGTATGTCCACTAAAAAGGAGCTTCTTTTCTCTGCTACAAAGAGGACCTCTCAATGGTATGTGCTATTTTTGACTTCTTTATTTTCTACTTTCAAAAAGTAGCCTCTTCCATATATTATAGAATCATTACTCTGTTTTTCAAATTATTCGCCTAAATAATAATCTATCTTAACAGGATTTTCTCCCAGGAGATCCCAAGTGATGTGACTGTAAATGCCGCAGGAATCTCCTTTACACTACACAAGGTGCGTTATTTTTCTCTGCTTTCGTCATTAAGTCAACTGAACTTGGTGCACAATCCGAACTGTTGTTGGTTTTAGTTAAATTCCTAATTGGATTAGAATTATCGTCCCTTGGTCACATCTTACAACAGCAATAACAAAGTCAGTGTAATCCCAATATATATAGTGGGGTCTTGGGAGGGTGCGCAGCCTTACCCCTAACTTTATGGGATAGAGATGTTGTTTACGATTGACCACGGGCAACCTCCTCCTTTATCCGATGTTGGGACTGACAATGTGAACGAGCTCACACAGGCGGAGTTAGGCCTTGTTCACGCCTTGATTTTCATCTTTGATGATTGAATCAGTAGGTTTAATAGTGTATTAACTCTGCTGCTTGCAGTTCCCATTAGTTTCAAAGAGTGGATACATAAGGAAGTTGGTCTCGGAATCCAATGATGCTGACGTTTCTACGATCGAAATCCCTGATATACCTGGTGGAGGAGAGGCATTTGAATTTGCAGCAAAGTTTTGTTATGGAATAAATTTTGAGATAAGCACAAGAAACATTGCCTTGCTGAGATGTGCAGCAGAATATCTTGAGATGACAGAAGACTATGCAGTTGC</genome_strand>
        <mrna_strand>GAACTTACAGAAGCAAAGAAAATGGCAACAAACATGTCTTTCTATTGTTTGCTTCATTAGGAAATAGTTTAAGGGAAAACGAATGAACATGGTTAAGGCCCGTAAAAGACTCGATCACCCATGGTGGATGACATGTTGATCTTGATAATGAACAACCTTCTACTCTAAACAGTATGTCCACTAAAAAGGAGCTTCTTTTCTCTGCTACAAAGAGGACCTCTCAATG.......................................................................................................................GATTTTCTCCCAGGAGATCCCAAGTGATGTGACTGTAAATGCCGCAGGAATCTCCTTTACACTACACAAG...........................................................................................................................................................................................................................................................................................................................................................................................TTCCCATTAGTTTCAAAGAGTGGATACATAAGGAAGTTGGTCTCGGAATCCAATGATGCTGACGTTTCTACGATCGAAATCCCTGATATACCTGGTGGAGGAGAGGCATTTGAATTTGCAGCAAAGTTTTGTTATGGAATAAATTTTGAGATAAGCACAAGAAACATTGCCTTGCTGAGATGTGCAGCAGAATATCTTGAGATGACAGAAGACTATGCAGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E276458" ref_strand="+" ref_description="SGN-E276458 [cLEN-17-B12]">
      <seq>caggaatctcctttacactacacaagttcccattagtttcaaagagtggataccataaggaagttggtctcggaatccaatgatgctgacgtttctacgatcgaaatccctgatatacctggtggaggagaggcatttgaatttgcagcaaagttttgttatggaataaattttgagataagcacaagaaacattgccttgctgagatgtgcagcagaatatcttgagatgacagaagactatgcagttgcaaatttggtgggaagaactgaggactactttagtgaagtaggaattgagagccttcatagtgctgttacaattttgcattcatcagaaaatcttattcccatttcagagaaagtgaaattggtgagccgctgcattgacacaattgcatatatagcctgtaaggataaccaattctccacatcaggttgagcagaagctggtatctatggattgacttcctccatgttttcgaacccgaagtctatagttaactggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="91175" stop="92660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91475" g_stop="91500" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91501" i_stop="91879" i_length="379">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.965" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91880" g_stop="92360" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="508" r_length="482" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E276458" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91475" e_stop="91500"/>
          <exon e_start="91880" e_stop="92360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGAATCTCCTTTACACTACACAAGGTGCGTTATTTTTCTCTGCTTTCGTCATTAAGTCAACTGAACTTGGTGCACAATCCGAACTGTTGTTGGTTTTAGTTAAATTCCTAATTGGATTAGAATTATCGTCCCTTGGTCACATCTTACAACAGCAATAACAAAGTCAGTGTAATCCCAATATATATAGTGGGGTCTTGGGAGGGTGCGCAGCCTTACCCCTAACTTTATGGGATAGAGATGTTGTTTACGATTGACCACGGGCAACCTCCTCCTTTATCCGATGTTGGGACTGACAATGTGAACGAGCTCACACAGGCGGAGTTAGGCCTTGTTCACGCCTTGATTTTCATCTTTGATGATTGAATCAGTAGGTTTAATAGTGTATTAACTCTGCTGCTTGCAGTTCCCATTAGTTTCAAAGAGTGGATA-CATAAGGAAGTTGGTCTCGGAATCCAATGATGCTGACGTTTCTACGATCGAAATCCCTGATATACCTGGTGGAGGAGAGGCATTTGAATTTGCAGCAAAGTTTTGTTATGGAATAAATTTTGAGATAAGCACAAGAAACATTGCCTTGCTGAGATGTGCAGCAGAATATCTTGAGATGACAGAAGACTATGCAGTTGCAAATTTGGTGGGAAGAACTGAGGACTACTTTAGTGAAGTAGGAATTGAGAGCCTTCATAGTGCTGTTACAATTTTGCATTCATCAGAAAATCTTATTCCCATTTCAGAGAAAGTGAAATTGGTGAGCCGCTGCATTGACACAATTGCATATATAGCCTGTAAGGATAACCAATTCTCCACATCAGGTTGAGCAGAAGCTGGTATCTATGGATTGACTTCCTCCATGTTTTCGAACCCGAAGTCTATAGTTAACTGGT</genome_strand>
        <mrna_strand>CAGGAATCTCCTTTACACTACACAAG...........................................................................................................................................................................................................................................................................................................................................................................................TTCCCATTAGTTTCAAAGAGTGGATACCATAAGGAAGTTGGTCTCGGAATCCAATGATGCTGACGTTTCTACGATCGAAATCCCTGATATACCTGGTGGAGGAGAGGCATTTGAATTTGCAGCAAAGTTTTGTTATGGAATAAATTTTGAGATAAGCACAAGAAACATTGCCTTGCTGAGATGTGCAGCAGAATATCTTGAGATGACAGAAGACTATGCAGTTGCAAATTTGGTGGGAAGAACTGAGGACTACTTTAGTGAAGTAGGAATTGAGAGCCTTCATAGTGCTGTTACAATTTTGCATTCATCAGAAAATCTTATTCCCATTTCAGAGAAAGTGAAATTGGTGAGCCGCTGCATTGACACAATTGCATATATAGCCTGTAAGGATAACCAATTCTCCACATCAGGTTGAGCAGAAGCTGGTATCTATGGATTGACTTCCTCCATGTTTTCGAACCCGAAGTCTATAGTTAACTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E204978" ref_strand="+" ref_description="SGN-E204978 [cLEC-16-I20]">
      <seq>aacattgccttgctgagatgtgcagcagaatatcttgagatgacagaagactatgcagttgcaaatttggtgggaagaactgaggactactttagtgaagtaggaattgagagccttcatagtgctgttacaattttgcattcatcagaaaatcttattcccatttcagagaaagtgaaattggtgagccgctgcattgacacaattgcatatatagcctgtaaggataaccaattctccacatcaggttgagcagaagctggtatctatggattgacttcctccatgttttcgaacccgaagtctatagttaactggtggtcggaggatttaaccgtccttagaattgattttttccaaagggttctgattgcaatgatgggaaggggattcaagcagtatgcacttggaccaatattaatgctctatgcacagaagtctcttcgttgtttggaaatatttggaaagggaaggaaaaagattgaaccaaaacaagaacatgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="91742" stop="92928"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92042" g_stop="92494" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92495" i_stop="92575" i_length="81">
            <donor d_prob="0.753" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92576" g_stop="92628" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="506" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E204978" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92042" e_stop="92494"/>
          <exon e_start="92576" e_stop="92628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATTGCCTTGCTGAGATGTGCAGCAGAATATCTTGAGATGACAGAAGACTATGCAGTTGCAAATTTGGTGGGAAGAACTGAGGACTACTTTAGTGAAGTAGGAATTGAGAGCCTTCATAGTGCTGTTACAATTTTGCATTCATCAGAAAATCTTATTCCCATTTCAGAGAAAGTGAAATTGGTGAGCCGCTGCATTGACACAATTGCATATATAGCCTGTAAGGATAACCAATTCTCCACATCAGGTTGAGCAGAAGCTGGTATCTATGGATTGACTTCCTCCATGTTTTCGAACCCGAAGTCTATAGTTAACTGGTGGTCGGAGGATTTAACCGTCCTTAGAATTGATTTTTTCCAAAGGGTTCTGATTGCAATGATGGGAAGGGGATTCAAGCAGTATGCACTTGGACCAATATTAATGCTCTATGCACAGAAGTCTCTTCGTTGTTTGGTGAGGCCTTGTACTATAAAATCTTGATGAATTGGTTAAATTGAAATCTTTGTGCATATAGTAACTTTTTGTTTATAACAGGAAATATTTGGAAAGGGAAGGAAAAAGATTGAACCAAAACAAGAACATGAAAA</genome_strand>
        <mrna_strand>AACATTGCCTTGCTGAGATGTGCAGCAGAATATCTTGAGATGACAGAAGACTATGCAGTTGCAAATTTGGTGGGAAGAACTGAGGACTACTTTAGTGAAGTAGGAATTGAGAGCCTTCATAGTGCTGTTACAATTTTGCATTCATCAGAAAATCTTATTCCCATTTCAGAGAAAGTGAAATTGGTGAGCCGCTGCATTGACACAATTGCATATATAGCCTGTAAGGATAACCAATTCTCCACATCAGGTTGAGCAGAAGCTGGTATCTATGGATTGACTTCCTCCATGTTTTCGAACCCGAAGTCTATAGTTAACTGGTGGTCGGAGGATTTAACCGTCCTTAGAATTGATTTTTTCCAAAGGGTTCTGATTGCAATGATGGGAAGGGGATTCAAGCAGTATGCACTTGGACCAATATTAATGCTCTATGCACAGAAGTCTCTTCGTTGTTTG.................................................................................GAAATATTTGGAAAGGGAAGGAAAAAGATTGAACCAAAACAAGAACATGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E322441" ref_strand="+" ref_description="SGN-E322441 [cTOB-26-G19]">
      <seq>acaattgcatatatagcctgtaaggataaccaattctccacatcaggttgagcagaagctggtatctatggattgacttcctccatgttttcgaacccgaagtctatagttaactggtggtcggaggatttaaccgtccttagaattgattttttccaaagggttctgattgcaatgatgggaaggggattcaagcagtatgcacttggaccaatattaatgctctatgcacagaagtctcttcgttgtttggaaatatttggaaagggaaggaaaaagattgaaccaaaacaagaacatgaaaaaagggttgttgtagaaaccatcgttggtcttctgccaagggagaaaaatgcattatccgttagcttttgtcaatgcttctccgagctgcaatatatctgcagaccacgatggctggcaggctcgacttggagaagaggatggattgcagcttggacaggctgtattggatgtatctgttaattccttcatattccttcagaggggacactttgtttgatgttgaaatcatgcagcttattgtgatgaatttccttgcctatgatatggacgaaaatcattgggagatgaagagtataatgagtctcattcattcagagacatgcagcgagttggggaacttatggaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="91943" stop="93025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92243" g_stop="92494" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92495" i_stop="92575" i_length="81">
            <donor d_prob="0.753" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92576" g_stop="92977" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="654" r_length="402" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E322441" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92243" e_stop="92494"/>
          <exon e_start="92576" e_stop="92977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATTGCATATATAGCCTGTAAGGATAACCAATTCTCCACATCAGGTTGAGCAGAAGCTGGTATCTATGGATTGACTTCCTCCATGTTTTCGAACCCGAAGTCTATAGTTAACTGGTGGTCGGAGGATTTAACCGTCCTTAGAATTGATTTTTTCCAAAGGGTTCTGATTGCAATGATGGGAAGGGGATTCAAGCAGTATGCACTTGGACCAATATTAATGCTCTATGCACAGAAGTCTCTTCGTTGTTTGGTGAGGCCTTGTACTATAAAATCTTGATGAATTGGTTAAATTGAAATCTTTGTGCATATAGTAACTTTTTGTTTATAACAGGAAATATTTGGAAAGGGAAGGAAAAAGATTGAACCAAAACAAGAACATGAAAAAAGGGTTGTTGTAGAAACCATCGTTGGTCTTCTGCCAAGGGAGAAAAATGCATTATCCGTTAGCTTTTGTCAATGCTTCTCCGAGCTGCAATATATCTGCAGACCACGATGGCTGGCAGGCTCGACTTGGAGAAGAGGATGGATTGCAGCTTGGACAGGCTGTATTGGATGTATCTGTTAATTCCTTCATATTCCTTCAGAGGGGACACTTTGTTTGATGTTGAAATCATGCAGCTTATTGTGATGAATTTCCTTGCCTATGATATGGAGGAAAATCATTGGGAGATGAAGAGTATAATGAGTCTCATTCATTAAGAGACATGGAGCGAGTTGGGGAACTTATGGAAAA</genome_strand>
        <mrna_strand>ACAATTGCATATATAGCCTGTAAGGATAACCAATTCTCCACATCAGGTTGAGCAGAAGCTGGTATCTATGGATTGACTTCCTCCATGTTTTCGAACCCGAAGTCTATAGTTAACTGGTGGTCGGAGGATTTAACCGTCCTTAGAATTGATTTTTTCCAAAGGGTTCTGATTGCAATGATGGGAAGGGGATTCAAGCAGTATGCACTTGGACCAATATTAATGCTCTATGCACAGAAGTCTCTTCGTTGTTTG.................................................................................GAAATATTTGGAAAGGGAAGGAAAAAGATTGAACCAAAACAAGAACATGAAAAAAGGGTTGTTGTAGAAACCATCGTTGGTCTTCTGCCAAGGGAGAAAAATGCATTATCCGTTAGCTTTTGTCAATGCTTCTCCGAGCTGCAATATATCTGCAGACCACGATGGCTGGCAGGCTCGACTTGGAGAAGAGGATGGATTGCAGCTTGGACAGGCTGTATTGGATGTATCTGTTAATTCCTTCATATTCCTTCAGAGGGGACACTTTGTTTGATGTTGAAATCATGCAGCTTATTGTGATGAATTTCCTTGCCTATGATATGGACGAAAATCATTGGGAGATGAAGAGTATAATGAGTCTCATTCATTCAGAGACATGCAGCGAGTTGGGGAACTTATGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E322652" ref_strand="+" ref_description="SGN-E322652 [cTOB-26-G16]">
      <seq>acaattgcatatatagcctgtaaggataaccaattctccacatcaggttgagcagaagctggtatctatggattgacttcctccatgttttcgaacccgaagtctatagttaactggtggtcggaggatttaaccgtccttagaattgattttttccaaagggttctgattgcaatgatgggaaggggattcaagcagtatgcacttggaccaatattaatgctctatgcacagaagtctcttcgttgtttggaaatatttggaaagggaaggaaaaagattgaaccaaaacaagaacatgaaaaaagggttgttgtagaaaccatcgttggtcttctgccaagggagaaaaatgcattatccgttagcttttgtcaatgcttctccgagctgcaatatatctgcagaccacgatggctggcaggctcgacttggagaagaggatggattgcagcttggacaggctgtattggatgtatctgttaattccttcatattccttcagaggggacactttngttgatgtttgaatcatgcagcttattgtgatgaatttcctttgctatgatatggaggaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="91943" stop="93025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92243" g_stop="92494" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92495" i_stop="92575" i_length="81">
            <donor d_prob="0.753" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92576" g_stop="92903" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="580" r_length="328" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E322652" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92243" e_stop="92494"/>
          <exon e_start="92576" e_stop="92903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATTGCATATATAGCCTGTAAGGATAACCAATTCTCCACATCAGGTTGAGCAGAAGCTGGTATCTATGGATTGACTTCCTCCATGTTTTCGAACCCGAAGTCTATAGTTAACTGGTGGTCGGAGGATTTAACCGTCCTTAGAATTGATTTTTTCCAAAGGGTTCTGATTGCAATGATGGGAAGGGGATTCAAGCAGTATGCACTTGGACCAATATTAATGCTCTATGCACAGAAGTCTCTTCGTTGTTTGGTGAGGCCTTGTACTATAAAATCTTGATGAATTGGTTAAATTGAAATCTTTGTGCATATAGTAACTTTTTGTTTATAACAGGAAATATTTGGAAAGGGAAGGAAAAAGATTGAACCAAAACAAGAACATGAAAAAAGGGTTGTTGTAGAAACCATCGTTGGTCTTCTGCCAAGGGAGAAAAATGCATTATCCGTTAGCTTTTGTCAATGCTTCTCCGAGCTGCAATATATCTGCAGACCACGATGGCTGGCAGGCTCGACTTGGAGAAGAGGATGGATTGCAGCTTGGACAGGCTGTATTGGATGTATCTGTTAATTCCTTCATATTCCTTCAGAGGGGACACTTTGTTTGATGTTGAAATCATGCAGCTTATTGTGATGAATTTCCTTGCCTATGATATGGAGGAAAA</genome_strand>
        <mrna_strand>ACAATTGCATATATAGCCTGTAAGGATAACCAATTCTCCACATCAGGTTGAGCAGAAGCTGGTATCTATGGATTGACTTCCTCCATGTTTTCGAACCCGAAGTCTATAGTTAACTGGTGGTCGGAGGATTTAACCGTCCTTAGAATTGATTTTTTCCAAAGGGTTCTGATTGCAATGATGGGAAGGGGATTCAAGCAGTATGCACTTGGACCAATATTAATGCTCTATGCACAGAAGTCTCTTCGTTGTTTG.................................................................................GAAATATTTGGAAAGGGAAGGAAAAAGATTGAACCAAAACAAGAACATGAAAAAAGGGTTGTTGTAGAAACCATCGTTGGTCTTCTGCCAAGGGAGAAAAATGCATTATCCGTTAGCTTTTGTCAATGCTTCTCCGAGCTGCAATATATCTGCAGACCACGATGGCTGGCAGGCTCGACTTGGAGAAGAGGATGGATTGCAGCTTGGACAGGCTGTATTGGATGTATCTGTTAATTCCTTCATATTCCTTCAGAGGGGACACTTTNGTTGATGTTTGAATCATGCAGCTTATTGTGATGAATTTCCTTTGCTATGATATGGAGGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E275552" ref_strand="+" ref_description="SGN-E275552 [cLEN-10-B21]">
      <seq>aggatttaaccgtccttagaattgattttttccaaagggttctgattgcaatgatgggaaggggattcaagcagtatgcacttggaccaatattaatgctctatgcacagaagtctcttcgttgtttggaaatatttggaaagggaaggaaaaagattgaaccaaaacaagaacatgaaaaaagggttgttgtataaaccatcgttggtcttctgccaagggagaaaaatgcattatccgttagcttttgtcaatgcttctccgagctgcaatatatctgcagaccacgatggctggcaggctcgacttggagaagaggatggattgcagcttggacaggctgtattggatgtatctgataattccttcatattccttcagaggggacactttgtttgatgttgaaatcatgcagcttattgcgatgaatttccttgcctatgatatggaggaaaatcattgggagatgaagagtataatgagtctcattcattaagagacatggagcgagttggggaacttatggaaaattaccttgctaaaatagcttctgaccgtaatctatccatcacaagcttcattaatcttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0203P08-EzkNF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0203P08.2" temp_strand="+" temp_description="C02HBa0203P08.2  CU457813.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203P08 sequenced_by:sanger upload_account_name:uk">
        <position start="92067" stop="93025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92367" g_stop="92494" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92495" i_stop="92575" i_length="81">
            <donor d_prob="0.753" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92576" g_stop="93025" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="578" r_length="450" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0203P08.2" gen_strand="+" ref_id="SGN-E275552" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0203P08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92367" e_stop="92494"/>
          <exon e_start="92576" e_stop="93025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATTTAACCGTCCTTAGAATTGATTTTTTCCAAAGGGTTCTGATTGCAATGATGGGAAGGGGATTCAAGCAGTATGCACTTGGACCAATATTAATGCTCTATGCACAGAAGTCTCTTCGTTGTTTGGTGAGGCCTTGTACTATAAAATCTTGATGAATTGGTTAAATTGAAATCTTTGTGCATATAGTAACTTTTTGTTTATAACAGGAAATATTTGGAAAGGGAAGGAAAAAGATTGAACCAAAACAAGAACATGAAAAAAGGGTTGTTGTAGAAACCATCGTTGGTCTTCTGCCAAGGGAGAAAAATGCATTATCCGTTAGCTTTTGTCAATGCTTCTCCGAGCTGCAATATATCTGCAGACCACGATGGCTGGCAGGCTCGACTTGGAGAAGAGGATGGATTGCAGCTTGGACAGGCTGTATTGGATGTATCTGTTAATTCCTTCATATTCCTTCAGAGGGGACACTTTGTTTGATGTTGAAATCATGCAGCTTATTGTGATGAATTTCCTTGCCTATGATATGGAGGAAAATCATTGGGAGATGAAGAGTATAATGAGTCTCATTCATTAAGAGACATGGAGCGAGTTGGGGAACTTATGGAAAATTACCTTGCTAAAATAGCTTCTGACCGTAATCTATCCATCACAAGCTT</genome_strand>
        <mrna_strand>AGGATTTAACCGTCCTTAGAATTGATTTTTTCCAAAGGGTTCTGATTGCAATGATGGGAAGGGGATTCAAGCAGTATGCACTTGGACCAATATTAATGCTCTATGCACAGAAGTCTCTTCGTTGTTTG.................................................................................GAAATATTTGGAAAGGGAAGGAAAAAGATTGAACCAAAACAAGAACATGAAAAAAGGGTTGTTGTATAAACCATCGTTGGTCTTCTGCCAAGGGAGAAAAATGCATTATCCGTTAGCTTTTGTCAATGCTTCTCCGAGCTGCAATATATCTGCAGACCACGATGGCTGGCAGGCTCGACTTGGAGAAGAGGATGGATTGCAGCTTGGACAGGCTGTATTGGATGTATCTGATAATTCCTTCATATTCCTTCAGAGGGGACACTTTGTTTGATGTTGAAATCATGCAGCTTATTGCGATGAATTTCCTTGCCTATGATATGGAGGAAAATCATTGGGAGATGAAGAGTATAATGAGTCTCATTCATTAAGAGACATGGAGCGAGTTGGGGAACTTATGGAAAATTACCTTGCTAAAATAGCTTCTGACCGTAATCTATCCATCACAAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>188</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="2447" PGL_stop="597"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2447" e_stop="2383"/>
            <exon e_start="2063" e_stop="1963"/>
            <exon e_start="1829" e_stop="1722"/>
            <exon e_start="1102" e_stop="1032"/>
            <exon e_start="887" e_stop="831"/>
            <exon e_start="701" e_stop="597"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.956" acc_prob="0.792" e_score="0.985"/>
          <exon-intron don_prob="0.137" acc_prob="0.936" e_score="1.000"/>
          <exon-intron don_prob="0.836" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="2447" e_stop="2383" e_length="65"/>
          </exon>
          <intron i_serial="1" don_prob="0.956" acc_prob="0.792">
            <gDNA_intron_boundary i_start="2382" i_stop="2064" i_length="319"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2063" e_stop="1963" e_length="101"/>
          </exon>
          <intron i_serial="2" don_prob="0.137" acc_prob="0.936">
            <gDNA_intron_boundary i_start="1962" i_stop="1830" i_length="133"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="1829" e_stop="1722" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.836" acc_prob="0.999">
            <gDNA_intron_boundary i_start="1721" i_stop="1103" i_length="619"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="1102" e_stop="1032" e_length="71"/>
          </exon>
          <intron i_serial="4" don_prob="0.966" acc_prob="0.958">
            <gDNA_intron_boundary i_start="1031" i_stop="888" i_length="144"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="887" e_stop="831" e_length="57"/>
          </exon>
          <intron i_serial="5" don_prob="0.955" acc_prob="0.990">
            <gDNA_intron_boundary i_start="830" i_stop="702" i_length="129"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="701" e_stop="597" e_length="105"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2447" stop="2383"/>
              <exon start="2063" stop="1963"/>
              <exon start="1829" stop="1722"/>
              <exon start="1102" stop="1032"/>
              <exon start="887" stop="831"/>
              <exon start="701" stop="597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269004" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTACAGACTTGACCAAAGCGTTGGAATTTGAGCCAGACTCTGCCGATATATTACATGAAAGAG : GAATTGTCAATTTTAAGTTTAAAGATTTCAAAGGTGCTGTTGAAGACCTCTCTACATGTGTAAAGTCCGATAAGGATAATAAATCTGCGTATACATATTTG : GGTTTGGCGTTATACTCTCTAGGAGAATATAGGAAGGCTGAGGAGGCACATAAGAAAGCAATCCAAATTGAAAGGAATTTCCTCGAGGCTTGGGCTCATCTAGCACAG : TTTTATCAAGACCTAGCAAACTCAGAGAAGGCCTTGGAATGCCTTCATCAGATTTTGCAAATAGATGGGAG : GTACGCGAAAGCATATCACCTGCGCGGGCTGCTACTTCATGGAATGGGAGAGCATAG : GAATGCTATAAAAGATTTATCAATGGGGTTGGCTATTGATAGCGCAAACATTGAATGCTTGTATCTACGAGCTTCTTGCTATCATGCTATTGGATTATATAAAGA</gDNA_template>
            <first_frame> N  Y  R  L  D  Q  S  V  G  I  *  A  R  L  C  R  Y  I  T  *  K  R :   N  C  Q  F  *  V  *  R  F  Q  R  C  C  *  R  P  L  Y  M  C  K  V  R  *  G  *  *  I  C  V  Y  I  F   : G  F  G  V  I  L  S  R  R  I  *  E  G  *  G  G  T  *  E  S  N  P  N  *  K  E  F  P  R  G  L  G  S  S  S  T   : V  L  S  R  P  S  K  L  R  E  G  L  G  M  P  S  S  D  F  A  N  R  W  E  :  V  R  E  S  I  S  P  A  R  A  A  T  S  W  N  G  R  A  *  :  E  C  Y  K  R  F  I  N  G  V  G  Y  *  *  R  K  H  *  M  L  V  S  T  S  F  L  L  S  C  Y  W  I  I  *  R </first_frame>
            <second_frame>  I  T  D  L  T  K  A  L  E  F  E  P  D  S  A  D  I  L  H  E  R   : G  I  V  N  F  K  F  K  D  F  K  G  A  V  E  D  L  S  T  C  V  K  S  D  K  D  N  K  S  A  Y  T  Y  L  :  G  L  A  L  Y  S  L  G  E  Y  R  K  A  E  E  A  H  K  K  A  I  Q  I  E  R  N  F  L  E  A  W  A  H  L  A  Q  :  F  Y  Q  D  L  A  N  S  E  K  A  L  E  C  L  H  Q  I  L  Q  I  D  G  R :   Y  A  K  A  Y  H  L  R  G  L  L  L  H  G  M  G  E  H  R :   N  A  I  K  D  L  S  M  G  L  A  I  D  S  A  N  I  E  C  L  Y  L  R  A  S  C  Y  H  A  I  G  L  Y  K   </second_frame>
            <third_frame>   L  Q  T  *  P  K  R  W  N  L  S  Q  T  L  P  I  Y  Y  M  K  E  :  E  L  S  I  L  S  L  K  I  S  K  V  L  L  K  T  S  L  H  V  *  S  P  I  R  I  I  N  L  R  I  H  I  W :   V  W  R  Y  T  L  *  E  N  I  G  R  L  R  R  H  I  R  K  Q  S  K  L  K  G  I  S  S  R  L  G  L  I  *  H  S :   F  I  K  T  *  Q  T  Q  R  R  P  W  N  A  F  I  R  F  C  K  *  M  G   : G  T  R  K  H  I  T  C  A  G  C  Y  F  M  E  W  E  S  I   : G  M  L  *  K  I  Y  Q  W  G  W  L  L  I  A  Q  T  L  N  A  C  I  Y  E  L  L  A  I  M  L  L  D  Y  I  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0203P08.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2446" stop="2383"/>
                    <exon start="2063" stop="1963"/>
                    <exon start="1829" stop="1722"/>
                    <exon start="1102" stop="1032"/>
                    <exon start="887" stop="831"/>
                    <exon start="701" stop="599"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>504</number_coding_nucleotides>
                  <number_encoded_amino_acids>168</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ITDLTKALEFEPDSADILHERGIVNFKFKDFKGAVEDLSTCVKSDKDNKSAYTYLGLALYSLGEYRKAEEAHKKAIQIERNFLEAWAHLAQFYQDLANSEKALECLHQILQIDGRYAKAYHLRGLLLHGMGEHRNAIKDLSMGLAIDSANIECLYLRASCYHAIGLYK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="9510" PGL_stop="6905"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9510" e_stop="9174"/>
            <exon e_start="9057" e_stop="8948"/>
            <exon e_start="8031" e_stop="7343"/>
            <exon e_start="7107" e_stop="6905"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.969" e_score="0.917"/>
          <exon-intron don_prob="0.999" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.832" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="9510" e_stop="9174" e_length="337"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.969">
            <gDNA_intron_boundary i_start="9173" i_stop="9058" i_length="116"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9057" e_stop="8948" e_length="110"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.981">
            <gDNA_intron_boundary i_start="8947" i_stop="8032" i_length="916"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="8031" e_stop="7343" e_length="689"/>
          </exon>
          <intron i_serial="3" don_prob="0.832" acc_prob="0.996">
            <gDNA_intron_boundary i_start="7342" i_stop="7108" i_length="235"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="7107" e_stop="6905" e_length="203"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9510" stop="9174"/>
              <exon start="9057" stop="8948"/>
              <exon start="8031" stop="7790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9510" stop="9174"/>
              <exon start="9057" stop="8948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9442" stop="9174"/>
              <exon start="9057" stop="8948"/>
              <exon start="8031" stop="7871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9441" stop="9174"/>
              <exon start="9057" stop="8948"/>
              <exon start="8031" stop="7665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9436" stop="9174"/>
              <exon start="9057" stop="8948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9431" stop="9174"/>
              <exon start="9057" stop="8948"/>
              <exon start="8031" stop="7678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9431" stop="9174"/>
              <exon start="9057" stop="8948"/>
              <exon start="8031" stop="7702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9431" stop="9174"/>
              <exon start="9057" stop="8948"/>
              <exon start="8031" stop="7860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9431" stop="9174"/>
              <exon start="9057" stop="8948"/>
              <exon start="8031" stop="7902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9431" stop="9174"/>
              <exon start="9057" stop="8948"/>
              <exon start="8031" stop="7962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9431" stop="9174"/>
              <exon start="9057" stop="8948"/>
              <exon start="8031" stop="7964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9431" stop="9174"/>
              <exon start="9057" stop="8948"/>
              <exon start="8031" stop="7964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9431" stop="9174"/>
              <exon start="9057" stop="8952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7887" stop="7343"/>
              <exon start="7107" stop="6905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7886" stop="7343"/>
              <exon start="7107" stop="6905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367836" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCCTCTTTCAGATTCTTTTTTTTCTCCTTTCTACCCCTCCCTTCTCTACCACCACATCGTAAAACACACCCACCAAAAAAAAGAAAAAAAAGAAAAACAGTTTTACAGCCGCAAGATCAGAAGTTCAGAAGCTCACAACACAACTGAAAGGAAAAAAAAATAAAAAATCAATCGCATCAATTGAGCTGCTTCCGATCCACTTGAGCCGCCGGCGATGGCGTCGAAAGTTACTGATAGGATTGAACTAGCTAAGCTTTGTAGCTCTAAGGAGTGGTCGAAAGCAATTCGAATTCTCGATTCTCTTCTTGCTCAAACTTGCGTCATTCAAGATATCTG : CAACCGAGCGTTTTGCTATAGTCAATTGGAGCTTCACAAGCATGTTATTAAGGATTGTGATAAGGCACTTCAGCTCGATCCTAAGCTTCTTCAAGCTTATATATTCAAAG : GACGTGCATTATCTGCTCTTGGTAAGAAAGAGGAAGCTCTTCTAGTTTGGGAGCAAGGGTATGAACATGCAGTTCATCAGTCCGCAGACTTAAAGCAACTGTTAGAGCTTGAAGAGCTGCTCAAAATTGCAAAGCAGAACACCGCAGTTGGCAGCAACAATCATTCGGTGCAGTCATCTGGCCCTGAGTCCAACACTGGACCTCCTCTTTCTACCAAATCTGGTGAAACTTGTGATATTAGTAAGGCCTCAGATAGGGAACTTAAAACATGCAGCAGTGGGATGTTGGAAAGCTCTGAGAAATCAAAGAATAGCTCTGTTTTACAAAATTCCTCAAGTAATAATTCCAAAAAGCATAAGAAGATTGAGTCTGAATCAAAGGAATTGCATGAGAGACAAGCAAATAAAACCAACAACAATTGCAAAAAATTGGGTTATCCATCTCTGGTTTGCAGTGAGTTAAGTGATATATCTGAAGACAGTAGGAAATCATCTGCAGTAACTAGTGAATCAAGTGAACAGTCAGAACCAAATGAGTTGCAGGAAATTCTCAGTCAGTTGAATAATAAATGTGATGTTCGCGTTGAATTGAGTGATGAAGGCAAGAGAAACAAAAAATTTTGTGTTACCAGGGTCAACAAAACCAAGTCCATTAACGTTGATTTCCGATTATCAAGGGGAATAGCACAG : GTACTGGGATACCATGCTCATGCATAGCAGGAAAGGCCTTCTACTGCAGTCTTCATGTCTTTTCTGTTCACTTTGCTTATTTCAGTTGTAATTTGGTGATTACACTCCACTTTTAATTTTGTGAACTTAACTGGAAGATTCTGCATATGTTCAAAGCTTGGGTCAACTAAGCTCTATTATTAGAATTCATTTTCTTCAGTTAC</gDNA_template>
            <first_frame> F  L  F  Q  I  L  F  F  L  L  S  T  P  P  F  S  T  T  T  S  *  N  T  P  T  K  K  K  K  K  K  K  N  S  F  T  A  A  R  S  E  V  Q  K  L  T  T  Q  L  K  G  K  K  N  K  K  S  I  A  S  I  E  L  L  P  I  H  L  S  R  R  R  W  R  R  K  L  L  I  G  L  N  *  L  S  F  V  A  L  R  S  G  R  K  Q  F  E  F  S  I  L  F  L  L  K  L  A  S  F  K  I  S   : A  T  E  R  F  A  I  V  N  W  S  F  T  S  M  L  L  R  I  V  I  R  H  F  S  S  I  L  S  F  F  K  L  I  Y  S  K  :  D  V  H  Y  L  L  L  V  R  K  R  K  L  F  *  F  G  S  K  G  M  N  M  Q  F  I  S  P  Q  T  *  S  N  C  *  S  L  K  S  C  S  K  L  Q  S  R  T  P  Q  L  A  A  T  I  I  R  C  S  H  L  A  L  S  P  T  L  D  L  L  F  L  P  N  L  V  K  L  V  I  L  V  R  P  Q  I  G  N  L  K  H  A  A  V  G  C  W  K  A  L  R  N  Q  R  I  A  L  F  Y  K  I  P  Q  V  I  I  P  K  S  I  R  R  L  S  L  N  Q  R  N  C  M  R  D  K  Q  I  K  P  T  T  I  A  K  N  W  V  I  H  L  W  F  A  V  S  *  V  I  Y  L  K  T  V  G  N  H  L  Q  *  L  V  N  Q  V  N  S  Q  N  Q  M  S  C  R  K  F  S  V  S  *  I  I  N  V  M  F  A  L  N  *  V  M  K  A  R  E  T  K  N  F  V  L  P  G  S  T  K  P  S  P  L  T  L  I  S  D  Y  Q  G  E  *  H  R :   Y  W  D  T  M  L  M  H  S  R  K  G  L  L  L  Q  S  S  C  L  F  C  S  L  C  L  F  Q  L  *  F  G  D  Y  T  P  L  L  I  L  *  T  *  L  E  D  S  A  Y  V  Q  S  L  G  Q  L  S  S  I  I  R  I  H  F  L  Q  L  </first_frame>
            <second_frame>  S  S  F  R  F  F  F  F  S  F  L  P  L  P  S  L  P  P  H  R  K  T  H  P  P  K  K  R  K  K  R  K  T  V  L  Q  P  Q  D  Q  K  F  R  S  S  Q  H  N  *  K  E  K  K  I  K  N  Q  S  H  Q  L  S  C  F  R  S  T  *  A  A  G  D  G  V  E  S  Y  *  *  D  *  T  S  *  A  L  *  L  *  G  V  V  E  S  N  S  N  S  R  F  S  S  C  S  N  L  R  H  S  R  Y  L  :  Q  P  S  V  L  L  *  S  I  G  A  S  Q  A  C  Y  *  G  L  *  *  G  T  S  A  R  S  *  A  S  S  S  L  Y  I  Q  R :   T  C  I  I  C  S  W  *  E  R  G  S  S  S  S  L  G  A  R  V  *  T  C  S  S  S  V  R  R  L  K  A  T  V  R  A  *  R  A  A  Q  N  C  K  A  E  H  R  S  W  Q  Q  Q  S  F  G  A  V  I  W  P  *  V  Q  H  W  T  S  S  F  Y  Q  I  W  *  N  L  *  Y  *  *  G  L  R  *  G  T  *  N  M  Q  Q  W  D  V  G  K  L  *  E  I  K  E  *  L  C  F  T  K  F  L  K  *  *  F  Q  K  A  *  E  D  *  V  *  I  K  G  I  A  *  E  T  S  K  *  N  Q  Q  Q  L  Q  K  I  G  L  S  I  S  G  L  Q  *  V  K  *  Y  I  *  R  Q  *  E  I  I  C  S  N  *  *  I  K  *  T  V  R  T  K  *  V  A  G  N  S  Q  S  V  E  *  *  M  *  C  S  R  *  I  E  *  *  R  Q  E  K  Q  K  I  L  C  Y  Q  G  Q  Q  N  Q  V  H  *  R  *  F  P  I  I  K  G  N  S  T   : G  T  G  I  P  C  S  C  I  A  G  K  A  F  Y  C  S  L  H  V  F  S  V  H  F  A  Y  F  S  C  N  L  V  I  T  L  H  F  *  F  C  E  L  N  W  K  I  L  H  M  F  K  A  W  V  N  *  A  L  L  L  E  F  I  F  F  S  Y </second_frame>
            <third_frame>   P  L  S  D  S  F  F  S  P  F  Y  P  S  L  L  Y  H  H  I  V  K  H  T  H  Q  K  K  E  K  K  E  K  Q  F  Y  S  R  K  I  R  S  S  E  A  H  N  T  T  E  R  K  K  K  *  K  I  N  R  I  N  *  A  A  S  D  P  L  E  P  P  A  M  A  S  K  V  T  D  R  I  E  L  A  K  L  C  S  S  K  E  W  S  K  A  I  R  I  L  D  S  L  L  A  Q  T  C  V  I  Q  D  I  C :   N  R  A  F  C  Y  S  Q  L  E  L  H  K  H  V  I  K  D  C  D  K  A  L  Q  L  D  P  K  L  L  Q  A  Y  I  F  K   : G  R  A  L  S  A  L  G  K  K  E  E  A  L  L  V  W  E  Q  G  Y  E  H  A  V  H  Q  S  A  D  L  K  Q  L  L  E  L  E  E  L  L  K  I  A  K  Q  N  T  A  V  G  S  N  N  H  S  V  Q  S  S  G  P  E  S  N  T  G  P  P  L  S  T  K  S  G  E  T  C  D  I  S  K  A  S  D  R  E  L  K  T  C  S  S  G  M  L  E  S  S  E  K  S  K  N  S  S  V  L  Q  N  S  S  S  N  N  S  K  K  H  K  K  I  E  S  E  S  K  E  L  H  E  R  Q  A  N  K  T  N  N  N  C  K  K  L  G  Y  P  S  L  V  C  S  E  L  S  D  I  S  E  D  S  R  K  S  S  A  V  T  S  E  S  S  E  Q  S  E  P  N  E  L  Q  E  I  L  S  Q  L  N  N  K  C  D  V  R  V  E  L  S  D  E  G  K  R  N  K  K  F  C  V  T  R  V  N  K  T  K  S  I  N  V  D  F  R  L  S  R  G  I  A  Q  :  V  L  G  Y  H  A  H  A  *  Q  E  R  P  S  T  A  V  F  M  S  F  L  F  T  L  L  I  S  V  V  I  W  *  L  H  S  T  F  N  F  V  N  L  T  G  R  F  C  I  C  S  K  L  G  S  T  K  L  Y  Y  *  N  S  F  S  S  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0203P08.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9325" stop="9174"/>
                    <exon start="9057" stop="8948"/>
                    <exon start="8031" stop="7343"/>
                    <exon start="7107" stop="7081"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>975</number_coding_nucleotides>
                  <number_encoded_amino_acids>325</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AASDPLEPPAMASKVTDRIELAKLCSSKEWSKAIRILDSLLAQTCVIQDICNRAFCYSQLELHKHVIKDCDKALQLDPKLLQAYIFKGRALSALGKKEEALLVWEQGYEHAVHQSADLKQLLELEELLKIAKQNTAVGSNNHSVQSSGPESNTGPPLSTKSGETCDISKASDRELKTCSSGMLESSEKSKNSSVLQNSSSNNSKKHKKIESESKELHERQANKTNNNCKKLGYPSLVCSELSDISEDSRKSSAVTSESSEQSEPNELQEILSQLNNKCDVRVELSDEGKRNKKFCVTRVNKTKSINVDFRLSRGIAQVLGYHAHA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="7168" PGL_stop="7756"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7168" e_stop="7756"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="7168" e_stop="7756" e_length="589"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7168" stop="7756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419696" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAATTGAGACATGAAGTTGATCTTTGGCATATATTTGAAGTTACAAATGTATTGTTATTTGTATTTCAATAAAGAAGAATAGCATATTAATGATCAACCGCACTAACAGGAAATATCAATAGATGGACTAATTCTTCCTGTCTTCATTGTAATATCACAGGATAGGCAGTGTACCTGTGCTATTCCCCTTGATAATCGGAAATCAACGTTAATGGACTTGGTTTTGTTGACCCTGGTAACACAAAATTTTTTGTTTCTCTTGCCTTCATCACTCAATTCAACGCGAACATCACATTTATTATTCAACTGACTGAGAATTTCCTGCAACTCATTTGGTTCTGACTGTTCACTTGATTCACTAGTTACTGCAGATGATTTCCTACTGTCTTCAGATATATCACTTAACTCACTGCAAACCAGAGATGGATAACCCAATTTTTTGCAATTGTTGTTGGTTTTATTTGCTTGTCTCTCATGCAATTCCTTTGATTCAGACTCAATCTTCTTATGCTTTTTGGAATTATTACTTGAGGAATTTTGTAAAACAGAGCTATTCTTTGATTTCTCAGAGCTTTCCAACATCCCACT</gDNA_template>
            <first_frame> Q  I  E  T  *  S  *  S  L  A  Y  I  *  S  Y  K  C  I  V  I  C  I  S  I  K  K  N  S  I  L  M  I  N  R  T  N  R  K  Y  Q  *  M  D  *  F  F  L  S  S  L  *  Y  H  R  I  G  S  V  P  V  L  F  P  L  I  I  G  N  Q  R  *  W  T  W  F  C  *  P  W  *  H  K  I  F  C  F  S  C  L  H  H  S  I  Q  R  E  H  H  I  Y  Y  S  T  D  *  E  F  P  A  T  H  L  V  L  T  V  H  L  I  H  *  L  L  Q  M  I  S  Y  C  L  Q  I  Y  H  L  T  H  C  K  P  E  M  D  N  P  I  F  C  N  C  C  W  F  Y  L  L  V  S  H  A  I  P  L  I  Q  T  Q  S  S  Y  A  F  W  N  Y  Y  L  R  N  F  V  K  Q  S  Y  S  L  I  S  Q  S  F  P  T  S  H  </first_frame>
            <second_frame>  K  L  R  H  E  V  D  L  W  H  I  F  E  V  T  N  V  L  L  F  V  F  Q  *  R  R  I  A  Y  *  *  S  T  A  L  T  G  N  I  N  R  W  T  N  S  S  C  L  H  C  N  I  T  G  *  A  V  Y  L  C  Y  S  P  *  *  S  E  I  N  V  N  G  L  G  F  V  D  P  G  N  T  K  F  F  V  S  L  A  F  I  T  Q  F  N  A  N  I  T  F  I  I  Q  L  T  E  N  F  L  Q  L  I  W  F  *  L  F  T  *  F  T  S  Y  C  R  *  F  P  T  V  F  R  Y  I  T  *  L  T  A  N  Q  R  W  I  T  Q  F  F  A  I  V  V  G  F  I  C  L  S  L  M  Q  F  L  *  F  R  L  N  L  L  M  L  F  G  I  I  T  *  G  I  L  *  N  R  A  I  L  *  F  L  R  A  F  Q  H  P  T </second_frame>
            <third_frame>   N  *  D  M  K  L  I  F  G  I  Y  L  K  L  Q  M  Y  C  Y  L  Y  F  N  K  E  E  *  H  I  N  D  Q  P  H  *  Q  E  I  S  I  D  G  L  I  L  P  V  F  I  V  I  S  Q  D  R  Q  C  T  C  A  I  P  L  D  N  R  K  S  T  L  M  D  L  V  L  L  T  L  V  T  Q  N  F  L  F  L  L  P  S  S  L  N  S  T  R  T  S  H  L  L  F  N  *  L  R  I  S  C  N  S  F  G  S  D  C  S  L  D  S  L  V  T  A  D  D  F  L  L  S  S  D  I  S  L  N  S  L  Q  T  R  D  G  *  P  N  F  L  Q  L  L  L  V  L  F  A  C  L  S  C  N  S  F  D  S  D  S  I  F  L  C  F  L  E  L  L  L  E  E  F  C  K  T  E  L  F  F  D  F  S  E  L  S  N  I  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0203P08.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7531" stop="7755"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLQMISYCLQIYHLTHCKPEMDNPIFCNCCWFYLLVSHAIPLIQTQSSYAFWNYYLRNFVKQSYSLISQSFPTSH</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0203P08.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7275" stop="7478"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QEISIDGLILPVFIVISQDRQCTCAIPLDNRKSTLMDLVLLTLVTQNFLFLLPSSLNSTRTSHLLFN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="18238" PGL_stop="18685"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18238" e_stop="18685"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="18238" e_stop="18685" e_length="448"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18238" stop="18559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18238" stop="18528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18238" stop="18388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18239" stop="18685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCGCTTTATACAAAAACAGAAACACAATATATACATTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGCATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACAAATATATAAATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAATTATACACTTCTGTGTATAAAGCGAGAGAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGAGAGACGCTGACAAATTTTAGTTAATGTTTGCTATGGAGCACAATTGAATCAAACCCTAGCTATTTTATTTAATTTAGGTTATTAA</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  Y  K  C  I  A  R  R  Y  M  F  F  S  L  Y  T  K  T  E  T  Q  Y  I  H  F  C  C  I  K  L  E  K  I  V  F  H  C  N  C  I  I  H  N  C  I  I  R  W  P  F  S  L  Q  Y  L  K  *  N  V  C  K  L  Y  N  *  V  Y  N  T  N  I  *  I  F  A  C  V  Y  T  I  F  S  R  F  I  Q  N  R  N  R  I  I  H  F  C  V  *  S  E  R  G  E  R  E  W  R  V  A  S  E  I  F  G  R  E  T  L  T  N  F  S  *  C  L  L  W  S  T  I  E  S  N  P  S  Y  F  I  *  F  R  L  L  </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  V  *  Q  E  D  I  C  F  S  R  F  I  Q  K  Q  K  H  N  I  Y  I  S  V  V  *  S  *  R  K  L  Y  F  T  A  I  V  *  F  T  I  A  *  F  V  G  L  F  L  C  N  I  *  S  K  M  F  V  N  C  I  I  K  C  I  T  Q  I  Y  K  F  L  H  V  Y  I  Q  F  S  L  A  L  Y  K  T  E  T  E  L  Y  T  S  V  Y  K  A  R  E  A  S  E  N  G  E  W  R  A  R  F  L  G  E  R  R  *  Q  I  L  V  N  V  C  Y  G  A  Q  L  N  Q  T  L  A  I  L  F  N  L  G  Y  * </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  Y  S  K  K  I  Y  V  F  L  A  L  Y  K  N  R  N  T  I  Y  T  F  L  L  Y  K  A  R  E  N  C  I  S  L  Q  L  Y  N  S  Q  L  H  N  S  L  A  F  F  S  A  I  F  E  V  K  C  L  *  I  V  *  L  S  V  *  H  K  Y  I  N  F  C  M  C  I  Y  N  F  L  S  L  Y  T  K  Q  K  Q  N  Y  T  L  L  C  I  K  R  E  R  R  A  R  M  E  S  G  E  R  D  F  W  E  R  D  A  D  K  F  *  L  M  F  A  M  E  H  N  *  I  K  P  *  L  F  Y  L  I  *  V  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0203P08.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="22228" PGL_stop="20793"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22228" e_stop="21726"/>
            <exon e_start="21316" e_stop="20870"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.934" e_score="0.996"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="22228" e_stop="21726" e_length="503"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.934">
            <gDNA_intron_boundary i_start="21725" i_stop="21317" i_length="409"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="21316" e_stop="20870" e_length="447"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22228" stop="21726"/>
              <exon start="21316" stop="20870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22090" stop="21726"/>
              <exon start="21316" stop="21065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329412" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGAACCTAAAATTAACAGCCACCGGCCAATCCATCTTCCTTCGTACCAAAAAGTCGGCTGGTCGTCTCCTCCAATTTCCACACCACACCTTAATAAAGTCTAAAAATTGGGAAACAAAAAACTCAGACCAAAAAATGGGAATCGGTGAAGAAGCTCACAACGTAAAAGTTGTAGGTTCAGGCGAAAAGACCATCGTACTGGGTCATGGCTTCGGCACCGATCAGTCTGTTTGGAAACAGCTTGTTCCTTACCTCGTTGATGAATATCGTGTTGTACTTTATGATAATATGGGTGCTGGACCGACAAATCCTGATTACTTCGATTTTGATCGATATTCTTCCCTTGAAGGTTATGCGTACGATTTAATTTCCATTTTGGAGGAACTTCAAATCAATCGTTGCATGTACTTAGGCCATTCCTTATCGGCTATGACTGGTGTTGTTGCTTCTATTTTTCGTCCCGATCTCTTTTCCAAACTCATTCTTGTATCAGCTTCCCCAAG : GTTCATAAATACGGATGACTATTATGGAGGATTCGAATCGGAAGACATAGAACAACTATGTCAAGCAATGGAGTCGAACTACAAGGCATGGGTATCTGGTTTTGCGCCACTAGCGGTGGGAGGTGACATGAATTCCGTGGCAGTACAAGAATTCAGCAGGACATTATTCAACATGAGACCAGACATAGCACTCAGTGTTTTCCGCACTGTTTTCACGTTCGACCTAAGGCATTATCTGTCCCGTGTTACTGTCCCTTGCCATATCATACAGAGCTCAATGGATGTTGCAATGCCAGTGACTGTTTCTGAATATTTACACAGAAATTTAGGCGGAAAATCGATCGTAGAGATCATCTCAACAGAAGGTCATCTTCCACATTTGAGCGCACCTGAGGCTACTATCCCCGTATTGCTTCGACACATTTCACATGATATTACTGCTGATGC</gDNA_template>
            <first_frame> V  N  L  K  L  T  A  T  G  Q  S  I  F  L  R  T  K  K  S  A  G  R  L  L  Q  F  P  H  H  T  L  I  K  S  K  N  W  E  T  K  N  S  D  Q  K  M  G  I  G  E  E  A  H  N  V  K  V  V  G  S  G  E  K  T  I  V  L  G  H  G  F  G  T  D  Q  S  V  W  K  Q  L  V  P  Y  L  V  D  E  Y  R  V  V  L  Y  D  N  M  G  A  G  P  T  N  P  D  Y  F  D  F  D  R  Y  S  S  L  E  G  Y  A  Y  D  L  I  S  I  L  E  E  L  Q  I  N  R  C  M  Y  L  G  H  S  L  S  A  M  T  G  V  V  A  S  I  F  R  P  D  L  F  S  K  L  I  L  V  S  A  S  P  R :   F  I  N  T  D  D  Y  Y  G  G  F  E  S  E  D  I  E  Q  L  C  Q  A  M  E  S  N  Y  K  A  W  V  S  G  F  A  P  L  A  V  G  G  D  M  N  S  V  A  V  Q  E  F  S  R  T  L  F  N  M  R  P  D  I  A  L  S  V  F  R  T  V  F  T  F  D  L  R  H  Y  L  S  R  V  T  V  P  C  H  I  I  Q  S  S  M  D  V  A  M  P  V  T  V  S  E  Y  L  H  R  N  L  G  G  K  S  I  V  E  I  I  S  T  E  G  H  L  P  H  L  S  A  P  E  A  T  I  P  V  L  L  R  H  I  S  H  D  I  T  A  D   </first_frame>
            <second_frame>  *  T  *  N  *  Q  P  P  A  N  P  S  S  F  V  P  K  S  R  L  V  V  S  S  N  F  H  T  T  P  *  *  S  L  K  I  G  K  Q  K  T  Q  T  K  K  W  E  S  V  K  K  L  T  T  *  K  L  *  V  Q  A  K  R  P  S  Y  W  V  M  A  S  A  P  I  S  L  F  G  N  S  L  F  L  T  S  L  M  N  I  V  L  Y  F  M  I  I  W  V  L  D  R  Q  I  L  I  T  S  I  L  I  D  I  L  P  L  K  V  M  R  T  I  *  F  P  F  W  R  N  F  K  S  I  V  A  C  T  *  A  I  P  Y  R  L  *  L  V  L  L  L  L  F  F  V  P  I  S  F  P  N  S  F  L  Y  Q  L  P  Q   : G  S  *  I  R  M  T  I  M  E  D  S  N  R  K  T  *  N  N  Y  V  K  Q  W  S  R  T  T  R  H  G  Y  L  V  L  R  H  *  R  W  E  V  T  *  I  P  W  Q  Y  K  N  S  A  G  H  Y  S  T  *  D  Q  T  *  H  S  V  F  S  A  L  F  S  R  S  T  *  G  I  I  C  P  V  L  L  S  L  A  I  S  Y  R  A  Q  W  M  L  Q  C  Q  *  L  F  L  N  I  Y  T  E  I  *  A  E  N  R  S  *  R  S  S  Q  Q  K  V  I  F  H  I  *  A  H  L  R  L  L  S  P  Y  C  F  D  T  F  H  M  I  L  L  L  M  </second_frame>
            <third_frame>   E  P  K  I  N  S  H  R  P  I  H  L  P  S  Y  Q  K  V  G  W  S  S  P  P  I  S  T  P  H  L  N  K  V  *  K  L  G  N  K  K  L  R  P  K  N  G  N  R  *  R  S  S  Q  R  K  S  C  R  F  R  R  K  D  H  R  T  G  S  W  L  R  H  R  S  V  C  L  E  T  A  C  S  L  P  R  *  *  I  S  C  C  T  L  *  *  Y  G  C  W  T  D  K  S  *  L  L  R  F  *  S  I  F  F  P  *  R  L  C  V  R  F  N  F  H  F  G  G  T  S  N  Q  S  L  H  V  L  R  P  F  L  I  G  Y  D  W  C  C  C  F  Y  F  S  S  R  S  L  F  Q  T  H  S  C  I  S  F  P  K  :  V  H  K  Y  G  *  L  L  W  R  I  R  I  G  R  H  R  T  T  M  S  S  N  G  V  E  L  Q  G  M  G  I  W  F  C  A  T  S  G  G  R  *  H  E  F  R  G  S  T  R  I  Q  Q  D  I  I  Q  H  E  T  R  H  S  T  Q  C  F  P  H  C  F  H  V  R  P  K  A  L  S  V  P  C  Y  C  P  L  P  Y  H  T  E  L  N  G  C  C  N  A  S  D  C  F  *  I  F  T  Q  K  F  R  R  K  I  D  R  R  D  H  L  N  R  R  S  S  S  T  F  E  R  T  *  G  Y  Y  P  R  I  A  S  T  H  F  T  *  Y  Y  C  *  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0203P08.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22228" stop="21726"/>
                    <exon start="21316" stop="20872"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>948</number_coding_nucleotides>
                  <number_encoded_amino_acids>316</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VNLKLTATGQSIFLRTKKSAGRLLQFPHHTLIKSKNWETKNSDQKMGIGEEAHNVKVVGSGEKTIVLGHGFGTDQSVWKQLVPYLVDEYRVVLYDNMGAGPTNPDYFDFDRYSSLEGYAYDLISILEELQINRCMYLGHSLSAMTGVVASIFRPDLFSKLILVSASPRFINTDDYYGGFESEDIEQLCQAMESNYKAWVSGFAPLAVGGDMNSVAVQEFSRTLFNMRPDIALSVFRTVFTFDLRHYLSRVTVPCHIIQSSMDVAMPVTVSEYLHRNLGGKSIVEIISTEGHLPHLSAPEATIPVLLRHISHDITAD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="21350" e_stop="20793"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="21350" e_stop="20793" e_length="558"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21350" stop="20793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732690" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCTTCTATAACGTCACATGATTTCTTTTCTTAGGTTCATAAATACGGATGACTATTATGGAGGATTCGAATCGGAAGACATAGAACAACTATGTCAAGCAATGGAGTCGAACTACAAGGCATGGGTATCTGGTTTTGCGCCACTAGCGGTGGGAGGTGACATGAATTCCGTGGCAGTACAAGAATTCAGCAGGACATTATTCAACATGAGACCAGACATAGCACTCAGTGTTTTCCGCACTGTTTTCACGTTCGACCTAAGGCATTATCTGTCCCGTGTTACTGTCCCTTGCCATATCATACAGAGCTCAATGGATGTTGCAATGCCAGTGACTGTTTCTGAATATTTACACAGAAATTTAGGCGGAAAATCGATCGTAGAGATCATCTCAACAGAAGGTCATCTTCCACATTTGAGCGCACCTGAGGCTACTATCCCCGTATTGCTTCGACACATTTCACATGATATTACTGCTGATGCTTCTTCTAGTTAAAGGATAATGAAAAAAACTTCTTCAAAAGTACTCATCATCAAAATAAATATACATGTGTATTTCT</gDNA_template>
            <first_frame> L  F  Y  N  V  T  *  F  L  F  L  G  S  *  I  R  M  T  I  M  E  D  S  N  R  K  T  *  N  N  Y  V  K  Q  W  S  R  T  T  R  H  G  Y  L  V  L  R  H  *  R  W  E  V  T  *  I  P  W  Q  Y  K  N  S  A  G  H  Y  S  T  *  D  Q  T  *  H  S  V  F  S  A  L  F  S  R  S  T  *  G  I  I  C  P  V  L  L  S  L  A  I  S  Y  R  A  Q  W  M  L  Q  C  Q  *  L  F  L  N  I  Y  T  E  I  *  A  E  N  R  S  *  R  S  S  Q  Q  K  V  I  F  H  I  *  A  H  L  R  L  L  S  P  Y  C  F  D  T  F  H  M  I  L  L  L  M  L  L  L  V  K  G  *  *  K  K  L  L  Q  K  Y  S  S  S  K  *  I  Y  M  C  I  S </first_frame>
            <second_frame>  S  S  I  T  S  H  D  F  F  S  *  V  H  K  Y  G  *  L  L  W  R  I  R  I  G  R  H  R  T  T  M  S  S  N  G  V  E  L  Q  G  M  G  I  W  F  C  A  T  S  G  G  R  *  H  E  F  R  G  S  T  R  I  Q  Q  D  I  I  Q  H  E  T  R  H  S  T  Q  C  F  P  H  C  F  H  V  R  P  K  A  L  S  V  P  C  Y  C  P  L  P  Y  H  T  E  L  N  G  C  C  N  A  S  D  C  F  *  I  F  T  Q  K  F  R  R  K  I  D  R  R  D  H  L  N  R  R  S  S  S  T  F  E  R  T  *  G  Y  Y  P  R  I  A  S  T  H  F  T  *  Y  Y  C  *  C  F  F  *  L  K  D  N  E  K  N  F  F  K  S  T  H  H  Q  N  K  Y  T  C  V  F   </second_frame>
            <third_frame>   L  L  *  R  H  M  I  S  F  L  R  F  I  N  T  D  D  Y  Y  G  G  F  E  S  E  D  I  E  Q  L  C  Q  A  M  E  S  N  Y  K  A  W  V  S  G  F  A  P  L  A  V  G  G  D  M  N  S  V  A  V  Q  E  F  S  R  T  L  F  N  M  R  P  D  I  A  L  S  V  F  R  T  V  F  T  F  D  L  R  H  Y  L  S  R  V  T  V  P  C  H  I  I  Q  S  S  M  D  V  A  M  P  V  T  V  S  E  Y  L  H  R  N  L  G  G  K  S  I  V  E  I  I  S  T  E  G  H  L  P  H  L  S  A  P  E  A  T  I  P  V  L  L  R  H  I  S  H  D  I  T  A  D  A  S  S  S  *  R  I  M  K  K  T  S  S  K  V  L  I  I  K  I  N  I  H  V  Y  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0203P08.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21339" stop="20857"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>480</number_coding_nucleotides>
                  <number_encoded_amino_acids>160</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RHMISFLRFINTDDYYGGFESEDIEQLCQAMESNYKAWVSGFAPLAVGGDMNSVAVQEFSRTLFNMRPDIALSVFRTVFTFDLRHYLSRVTVPCHIIQSSMDVAMPVTVSEYLHRNLGGKSIVEIISTEGHLPHLSAPEATIPVLLRHISHDITADASSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="21575" PGL_stop="22399"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21575" e_stop="22399"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="21575" e_stop="22399" e_length="825"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21575" stop="22399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732249" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGTTTAAGAGGGAAATGCTACGTACATCTTCCTTCTAATTTATTTGTGTTAAACGAGCATTTTAATTAACACTTTTCTTGTTTTTTAGTTAAATACAGAAATATTTAAAAGTTTCATTAGACAAATAAATTGACATATCAATTTATCTCACCTTGGGGAAGCTGATACAAGAATGAGTTTGGAAAAGAGATCGGGACGAAAAATAGAAGCAACAACACCAGTCATAGCCGATAAGGAATGGCCTAAGTACATGCAACGATTGATTTGAAGTTCCTCCAAAATGGAAATTAAATCGTACGCATAACCTTCAAGGGAAGAATATCGATCAAAATCGAAGTAATCAGGATTTGTCGGTCCAGCACCCATATTATCATAAAGTACAACACGATATTCATCAACGAGGTAAGGAACAAGCTGTTTCCAAACAGACTGATCGGTGCCGAAGCCATGACCCAGTACGATGGTCTTTTCGCCTGAACCTACAACTTTTACGTTGTGAGCTTCTTCACCGATTCCCATTTTTTGGTCTGAGTTTTTTGTTTCCCAATTTTTAGACTTTATTAAGGTGTGGTGTGGAAATTGGAGGAGACGACCAGCCGACTTTTTGGTACGAAGGAAGATGGATTGGCCGGTGGCTGTTAATTTTAGGTTCACAAATCATAACATTAGTATTGCAAGAGTGCTAATTAATGGAAGGGTTTTTATGGTTATCAAGTTATTGAAATACTTTAGTAAAGTTACTTTATCTGTTTTATGCTAAAATAAAAGTCACACATATTTTTTACTATAATAAAATATTAATAACTTCTACCGAAAAACACTAGA</gDNA_template>
            <first_frame> R  L  R  G  K  C  Y  V  H  L  P  S  N  L  F  V  L  N  E  H  F  N  *  H  F  S  C  F  L  V  K  Y  R  N  I  *  K  F  H  *  T  N  K  L  T  Y  Q  F  I  S  P  W  G  S  *  Y  K  N  E  F  G  K  E  I  G  T  K  N  R  S  N  N  T  S  H  S  R  *  G  M  A  *  V  H  A  T  I  D  L  K  F  L  Q  N  G  N  *  I  V  R  I  T  F  K  G  R  I  S  I  K  I  E  V  I  R  I  C  R  S  S  T  H  I  I  I  K  Y  N  T  I  F  I  N  E  V  R  N  K  L  F  P  N  R  L  I  G  A  E  A  M  T  Q  Y  D  G  L  F  A  *  T  Y  N  F  Y  V  V  S  F  F  T  D  S  H  F  L  V  *  V  F  C  F  P  I  F  R  L  Y  *  G  V  V  W  K  L  E  E  T  T  S  R  L  F  G  T  K  E  D  G  L  A  G  G  C  *  F  *  V  H  K  S  *  H  *  Y  C  K  S  A  N  *  W  K  G  F  Y  G  Y  Q  V  I  E  I  L  *  *  S  Y  F  I  C  F  M  L  K  *  K  S  H  I  F  F  T  I  I  K  Y  *  *  L  L  P  K  N  T  R </first_frame>
            <second_frame>  V  *  E  G  N  A  T  Y  I  F  L  L  I  Y  L  C  *  T  S  I  L  I  N  T  F  L  V  F  *  L  N  T  E  I  F  K  S  F  I  R  Q  I  N  *  H  I  N  L  S  H  L  G  E  A  D  T  R  M  S  L  E  K  R  S  G  R  K  I  E  A  T  T  P  V  I  A  D  K  E  W  P  K  Y  M  Q  R  L  I  *  S  S  S  K  M  E  I  K  S  Y  A  *  P  S  R  E  E  Y  R  S  K  S  K  *  S  G  F  V  G  P  A  P  I  L  S  *  S  T  T  R  Y  S  S  T  R  *  G  T  S  C  F  Q  T  D  *  S  V  P  K  P  *  P  S  T  M  V  F  S  P  E  P  T  T  F  T  L  *  A  S  S  P  I  P  I  F  W  S  E  F  F  V  S  Q  F  L  D  F  I  K  V  W  C  G  N  W  R  R  R  P  A  D  F  L  V  R  R  K  M  D  W  P  V  A  V  N  F  R  F  T  N  H  N  I  S  I  A  R  V  L  I  N  G  R  V  F  M  V  I  K  L  L  K  Y  F  S  K  V  T  L  S  V  L  C  *  N  K  S  H  T  Y  F  L  L  *  *  N  I  N  N  F  Y  R  K  T  L   </second_frame>
            <third_frame>   F  K  R  E  M  L  R  T  S  S  F  *  F  I  C  V  K  R  A  F  *  L  T  L  F  L  F  F  S  *  I  Q  K  Y  L  K  V  S  L  D  K  *  I  D  I  S  I  Y  L  T  L  G  K  L  I  Q  E  *  V  W  K  R  D  R  D  E  K  *  K  Q  Q  H  Q  S  *  P  I  R  N  G  L  S  T  C  N  D  *  F  E  V  P  P  K  W  K  L  N  R  T  H  N  L  Q  G  K  N  I  D  Q  N  R  S  N  Q  D  L  S  V  Q  H  P  Y  Y  H  K  V  Q  H  D  I  H  Q  R  G  K  E  Q  A  V  S  K  Q  T  D  R  C  R  S  H  D  P  V  R  W  S  F  R  L  N  L  Q  L  L  R  C  E  L  L  H  R  F  P  F  F  G  L  S  F  L  F  P  N  F  *  T  L  L  R  C  G  V  E  I  G  G  D  D  Q  P  T  F  W  Y  E  G  R  W  I  G  R  W  L  L  I  L  G  S  Q  I  I  T  L  V  L  Q  E  C  *  L  M  E  G  F  L  W  L  S  S  Y  *  N  T  L  V  K  L  L  Y  L  F  Y  A  K  I  K  V  T  H  I  F  Y  Y  N  K  I  L  I  T  S  T  E  K  H  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0203P08.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21838" stop="22128"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FEVPPKWKLNRTHNLQGKNIDQNRSNQDLSVQHPYYHKVQHDIHQRGKEQAVSKQTDRCRSHDPVRWSFRLNLQLLRCELLHRFPFFGLSFLFPNF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0203P08.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22074" stop="22334"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASSPIPIFWSEFFVSQFLDFIKVWCGNWRRRPADFLVRRKMDWPVAVNFRFTNHNISIARVLINGRVFMVIKLLKYFSKVTLSVLC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="26655" PGL_stop="23309"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26655" e_stop="26345"/>
            <exon e_start="25977" e_stop="25595"/>
            <exon e_start="24291" e_stop="24055"/>
            <exon e_start="23846" e_stop="23309"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.984"/>
          <exon-intron don_prob="0.957" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.804" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.914"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="26655" e_stop="26345" e_length="311"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="26344" i_stop="25978" i_length="367"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25977" e_stop="25595" e_length="383"/>
          </exon>
          <intron i_serial="2" don_prob="0.957" acc_prob="0.977">
            <gDNA_intron_boundary i_start="25594" i_stop="24292" i_length="1303"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24291" e_stop="24055" e_length="237"/>
          </exon>
          <intron i_serial="3" don_prob="0.804" acc_prob="0.999">
            <gDNA_intron_boundary i_start="24054" i_stop="23847" i_length="208"/>
          </intron>
          <exon e_serial="4" e_score="0.914">
            <gDNA_exon_boundary e_start="23846" e_stop="23309" e_length="538"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26655" stop="26345"/>
              <exon start="25977" stop="25693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26655" stop="26345"/>
              <exon start="25977" stop="25902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26527" stop="26345"/>
              <exon start="25977" stop="25611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25850" stop="25595"/>
              <exon start="24291" stop="24055"/>
              <exon start="23846" stop="23531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24138" stop="24055"/>
              <exon start="23846" stop="23309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453674" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCTTCTTTCTTTTCTTCAAAAAAAAAAAAAAATCCTCTTTCACTCTACAGCCAGCAGTCTAAGATGTTAAGCTCCTGTTTTGGGAGCTGCTTTGGTGGGGACGATGGTGATGATCTTTTATGGCATATGGACTTGAAGCCACATGCCACAGGTGAATATTCTGTTGCTGTAGTTCAGGCCAATTCTTTGCTTGAAGATCAAGGTCAAGTTTTTACAACCCCTAGTGCTACTTATGTGGGTGTTTATGATGGTCATGGTGGCCCGCAAGCTTCTCGCTTCATCAACAACAATCTCTTCCCTCAACTACAAA : AGCTGGCTTTGGAAGAAGGAGGATTGTCTGAGGACGTGATCAGGAAAGCATTTGATGCTATTGAGGAGGGATTCTTGCGTTTGGTGAAACAGTCTTGGCTGGATCAACCTCAGATTGCATCTGCAGGGTCTTGTTGTCTATTTGGAGCAATCTCAAAAGATGAATTGTATGTGGCAAATCTTGGGGACTCCAGGGCAGTGCTTGGCAGGAGAGCAGAGACAGGCCAGACGGGTGATTCAGCAGTAGTAGTGGCAGAACGTTTGTCGATAGATCATAATGTTGGGGTTGAGGAGGTTAGGAAGGAGGTAGAGGCACTGCATCCAGATGATTCTCATGTTGTGGTCTACGTTCGAGGGGTTTGGAGAATTAAGGGTATAATTCAG : GTTTCTAGATCAATTGGTGATGTCTATCTGAAGAAACCTGAGTTTAATAGAGATCCTATGTTCATACAATATGGATATCCTATTCCTTTAAAAAGAGCTGTAATGTCAGCAGAGCCCTCCATATTGATCCGAAAGATAAGACCAGAAGACTTATTTTTGATATTTGCATCGGATGGCCTATGGGATCAACTAACCGATGACGAAGCTAAGGATATTGTTTTGAAGAATCCTAGAATT : GGAATAGCAAAACGATTAGTGAGAGCTGCCCTTGAGGGTGCTGCAGAGAAGAAAGAAATGAGATATGAGGACATCAAACGACTAGAGAAGGGGGAAAGGCGGCACGTTCATGATGATATCACAGTTATTGTGATATATTTGGATCACCCTGGAAGGTCCTCAAATTCTGGAATTAACATTGTTAAGGGCACGAATGTCCCTCTTGACATATACTCCTTGAACTCGGGTCATTAAGGAGAGAACATATCTTATGTTTCCCCATGAAAAGTGTCTAATACATGTATACATTATATATACCATTTTGTAAATACGTCGTCTAAAACTTGGAGAGTTTCTTTATATACTTTTAGATAACAATCAGAAGGGCCAACCATGTACATTTACCTTGATGTACACGTACCTTCTGTATTGGAGTTGATAGACTAAGCTGGTGACAAAACCAGCTTGAGCTTATACTTCTTTTTTTGACACTTCTGCTTAAAGCCCTGTTTGTTTGTACCTTGTTATACTTTCCTGGCAATTATACTACAACTCTTCA</gDNA_template>
            <first_frame> V  F  F  L  F  F  K  K  K  K  K  S  S  F  T  L  Q  P  A  V  *  D  V  K  L  L  F  W  E  L  L  W  W  G  R  W  *  *  S  F  M  A  Y  G  L  E  A  T  C  H  R  *  I  F  C  C  C  S  S  G  Q  F  F  A  *  R  S  R  S  S  F  Y  N  P  *  C  Y  L  C  G  C  L  *  W  S  W  W  P  A  S  F  S  L  H  Q  Q  Q  S  L  P  S  T  T  K :   A  G  F  G  R  R  R  I  V  *  G  R  D  Q  E  S  I  *  C  Y  *  G  G  I  L  A  F  G  E  T  V  L  A  G  S  T  S  D  C  I  C  R  V  L  L  S  I  W  S  N  L  K  R  *  I  V  C  G  K  S  W  G  L  Q  G  S  A  W  Q  E  S  R  D  R  P  D  G  *  F  S  S  S  S  G  R  T  F  V  D  R  S  *  C  W  G  *  G  G  *  E  G  G  R  G  T  A  S  R  *  F  S  C  C  G  L  R  S  R  G  L  E  N  *  G  Y  N  S   : G  F  *  I  N  W  *  C  L  S  E  E  T  *  V  *  *  R  S  Y  V  H  T  I  W  I  S  Y  S  F  K  K  S  C  N  V  S  R  A  L  H  I  D  P  K  D  K  T  R  R  L  I  F  D  I  C  I  G  W  P  M  G  S  T  N  R  *  R  S  *  G  Y  C  F  E  E  S  *  N   : W  N  S  K  T  I  S  E  S  C  P  *  G  C  C  R  E  E  R  N  E  I  *  G  H  Q  T  T  R  E  G  G  K  A  A  R  S  *  *  Y  H  S  Y  C  D  I  F  G  S  P  W  K  V  L  K  F  W  N  *  H  C  *  G  H  E  C  P  S  *  H  I  L  L  E  L  G  S  L  R  R  E  H  I  L  C  F  P  M  K  S  V  *  Y  M  Y  T  L  Y  I  P  F  C  K  Y  V  V  *  N  L  E  S  F  F  I  Y  F  *  I  T  I  R  R  A  N  H  V  H  L  P  *  C  T  R  T  F  C  I  G  V  D  R  L  S  W  *  Q  N  Q  L  E  L  I  L  L  F  L  T  L  L  L  K  A  L  F  V  C  T  L  L  Y  F  P  G  N  Y  T  T  T  L   </first_frame>
            <second_frame>  S  S  F  F  S  S  K  K  K  K  N  P  L  S  L  Y  S  Q  Q  S  K  M  L  S  S  C  F  G  S  C  F  G  G  D  D  G  D  D  L  L  W  H  M  D  L  K  P  H  A  T  G  E  Y  S  V  A  V  V  Q  A  N  S  L  L  E  D  Q  G  Q  V  F  T  T  P  S  A  T  Y  V  G  V  Y  D  G  H  G  G  P  Q  A  S  R  F  I  N  N  N  L  F  P  Q  L  Q   : K  L  A  L  E  E  G  G  L  S  E  D  V  I  R  K  A  F  D  A  I  E  E  G  F  L  R  L  V  K  Q  S  W  L  D  Q  P  Q  I  A  S  A  G  S  C  C  L  F  G  A  I  S  K  D  E  L  Y  V  A  N  L  G  D  S  R  A  V  L  G  R  R  A  E  T  G  Q  T  G  D  S  A  V  V  V  A  E  R  L  S  I  D  H  N  V  G  V  E  E  V  R  K  E  V  E  A  L  H  P  D  D  S  H  V  V  V  Y  V  R  G  V  W  R  I  K  G  I  I  Q  :  V  S  R  S  I  G  D  V  Y  L  K  K  P  E  F  N  R  D  P  M  F  I  Q  Y  G  Y  P  I  P  L  K  R  A  V  M  S  A  E  P  S  I  L  I  R  K  I  R  P  E  D  L  F  L  I  F  A  S  D  G  L  W  D  Q  L  T  D  D  E  A  K  D  I  V  L  K  N  P  R  I  :  G  I  A  K  R  L  V  R  A  A  L  E  G  A  A  E  K  K  E  M  R  Y  E  D  I  K  R  L  E  K  G  E  R  R  H  V  H  D  D  I  T  V  I  V  I  Y  L  D  H  P  G  R  S  S  N  S  G  I  N  I  V  K  G  T  N  V  P  L  D  I  Y  S  L  N  S  G  H  *  G  E  N  I  S  Y  V  S  P  *  K  V  S  N  T  C  I  H  Y  I  Y  H  F  V  N  T  S  S  K  T  W  R  V  S  L  Y  T  F  R  *  Q  S  E  G  P  T  M  Y  I  Y  L  D  V  H  V  P  S  V  L  E  L  I  D  *  A  G  D  K  T  S  L  S  L  Y  F  F  F  *  H  F  C  L  K  P  C  L  F  V  P  C  Y  T  F  L  A  I  I  L  Q  L  F  </second_frame>
            <third_frame>   L  L  S  F  L  Q  K  K  K  K  I  L  F  H  S  T  A  S  S  L  R  C  *  A  P  V  L  G  A  A  L  V  G  T  M  V  M  I  F  Y  G  I  W  T  *  S  H  M  P  Q  V  N  I  L  L  L  *  F  R  P  I  L  C  L  K  I  K  V  K  F  L  Q  P  L  V  L  L  M  W  V  F  M  M  V  M  V  A  R  K  L  L  A  S  S  T  T  I  S  S  L  N  Y  K  :  S  W  L  W  K  K  E  D  C  L  R  T  *  S  G  K  H  L  M  L  L  R  R  D  S  C  V  W  *  N  S  L  G  W  I  N  L  R  L  H  L  Q  G  L  V  V  Y  L  E  Q  S  Q  K  M  N  C  M  W  Q  I  L  G  T  P  G  Q  C  L  A  G  E  Q  R  Q  A  R  R  V  I  Q  Q  *  *  W  Q  N  V  C  R  *  I  I  M  L  G  L  R  R  L  G  R  R  *  R  H  C  I  Q  M  I  L  M  L  W  S  T  F  E  G  F  G  E  L  R  V  *  F  R :   F  L  D  Q  L  V  M  S  I  *  R  N  L  S  L  I  E  I  L  C  S  Y  N  M  D  I  L  F  L  *  K  E  L  *  C  Q  Q  S  P  P  Y  *  S  E  R  *  D  Q  K  T  Y  F  *  Y  L  H  R  M  A  Y  G  I  N  *  P  M  T  K  L  R  I  L  F  *  R  I  L  E  L :   E  *  Q  N  D  *  *  E  L  P  L  R  V  L  Q  R  R  K  K  *  D  M  R  T  S  N  D  *  R  R  G  K  G  G  T  F  M  M  I  S  Q  L  L  *  Y  I  W  I  T  L  E  G  P  Q  I  L  E  L  T  L  L  R  A  R  M  S  L  L  T  Y  T  P  *  T  R  V  I  K  E  R  T  Y  L  M  F  P  H  E  K  C  L  I  H  V  Y  I  I  Y  T  I  L  *  I  R  R  L  K  L  G  E  F  L  Y  I  L  L  D  N  N  Q  K  G  Q  P  C  T  F  T  L  M  Y  T  Y  L  L  Y  W  S  *  *  T  K  L  V  T  K  P  A  *  A  Y  T  S  F  F  D  T  S  A  *  S  P  V  C  L  Y  L  V  I  L  S  W  Q  L  Y  Y  N  S  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0203P08.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26654" stop="26345"/>
                    <exon start="25977" stop="25595"/>
                    <exon start="24291" stop="24055"/>
                    <exon start="23846" stop="23613"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1161</number_coding_nucleotides>
                  <number_encoded_amino_acids>387</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSFFSSKKKKNPLSLYSQQSKMLSSCFGSCFGGDDGDDLLWHMDLKPHATGEYSVAVVQANSLLEDQGQVFTTPSATYVGVYDGHGGPQASRFINNNLFPQLQKLALEEGGLSEDVIRKAFDAIEEGFLRLVKQSWLDQPQIASAGSCCLFGAISKDELYVANLGDSRAVLGRRAETGQTGDSAVVVAERLSIDHNVGVEEVRKEVEALHPDDSHVVVYVRGVWRIKGIIQVSRSIGDVYLKKPEFNRDPMFIQYGYPIPLKRAVMSAEPSILIRKIRPEDLFLIFASDGLWDQLTDDEAKDIVLKNPRIGIAKRLVRAALEGAAEKKEMRYEDIKRLEKGERRHVHDDITVIVIYLDHPGRSSNSGINIVKGTNVPLDIYSLNSGH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="27462" PGL_stop="30120"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27462" e_stop="28173"/>
            <exon e_start="29547" e_stop="30120"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.997"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="27462" e_stop="28173" e_length="712"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="28174" i_stop="29546" i_length="1373"/>
          </intron>
          <exon e_serial="2" e_score="0.977">
            <gDNA_exon_boundary e_start="29547" e_stop="30120" e_length="574"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27462" stop="28133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27543" stop="28173"/>
              <exon start="29547" stop="29588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27543" stop="28010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27544" stop="28021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27648" stop="28121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27660" stop="28173"/>
              <exon start="29547" stop="29651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27702" stop="28173"/>
              <exon start="29547" stop="29678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27712" stop="28173"/>
              <exon start="29547" stop="29592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28041" stop="28173"/>
              <exon start="29547" stop="29571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28110" stop="28173"/>
              <exon start="29547" stop="30120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395610" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATTTTCTCTGAAAAACAAGAGAGTGACTTTTATGTATATGTAATACGAAGATGAAGAGCTGTAATATCAATGGCTACTGGTTTAATCCGACGAGCTATTTATAGGGTTCAGTCATCTTCGCCGGCGGCGAGGCTACTTGTTGCCCGAGCTCACGCTTCGGACACCAAATCCCAGCAGGTCCAACCTCAAGTCGTTTCAAATTTACCGATGGAATCCAGATAACCCAGGGAAACCCGAGCTCCAAGAATACAAAATTGATCTGAAGGAATGTGGCCCTATGGTCTTAGACGCCCTAATCAAAATCAAGAATGAAGTTGACCCTTCACCAACCTTCAGAAGATCTTGCAGAGAAGGGATCTGTGGGTCCTGTGCCATGAACATCGACGGCTGTAATGGACTCGCTTGTTTGACAAAGATCTCATCGGATTCTGTATCGACGATTACGCCACTGCCACATATGTTTGTGATTAAGGATTTGGTAGTGGATATGACTAATTTTTATAATCAGTATAAGTCTATTGAGCCTTGGCTGAAGAGAAAAACACCTGCGCCAACGCCTGGAAAGGAGATACCTCAGAGCAAGAGCGATAAGGCTAAGTTGGATGGGATGTACGAGTGTATTCTCTGTGCTTGTTGTAGTACATCATGCCCTAGCTACTGGTGGAATCCTGAGTCTTATCTTGGTCCTGCTGCACTACTCCATGCCAATAG : ATGGATCATGGATAGCCGTGATGAACATACTCTGGAGCGCCTGGACGCAGTTAATGATGAATTCAAGCTTTATCGCTGCCACACTATTTTGAACTGTTCTCGTGCTTGCCCAAAGGGATTTAATCCTGGCAAGCTCAGAACATCAAGCGCCTGGAGATGGCGCCTTGAGCCTGCACTCTGCAGTGTAGTGTACCAGTCTATTCTGCTAACATTGATTTTGGAGGACCAGTAGGAGGTAGTTCTCAAAATAATTTATGCACAGATCGTAATTTGCTTTCTGAGATTTTTTTTTGGTGCTAGGGTGTTGCCCTTCCCCGAGCCCTGTGTGAATATGGGATTCTTTTGTGCACCGTGCTGCCTTATTCGAGATGAAAGGTGCATCTCACCTGAAATATTGTACTAACAATTAGTATGATAGCTGAAGTGAAGCAAACATGTAATAGCAGAGAGTATATACAAATTTATGAACTGATTTATCATAGAAAATAATGATTTCTATAAATATTCGTTTGAAATTATACCTCATAAAAACTTCATCAATTATATAAAACATTTCTTATATTATCGATGGTAG</gDNA_template>
            <first_frame> H  F  L  *  K  T  R  E  *  L  L  C  I  C  N  T  K  M  K  S  C  N  I  N  G  Y  W  F  N  P  T  S  Y  L  *  G  S  V  I  F  A  G  G  E  A  T  C  C  P  S  S  R  F  G  H  Q  I  P  A  G  P  T  S  S  R  F  K  F  T  D  G  I  Q  I  T  Q  G  N  P  S  S  K  N  T  K  L  I  *  R  N  V  A  L  W  S  *  T  P  *  S  K  S  R  M  K  L  T  L  H  Q  P  S  E  D  L  A  E  K  G  S  V  G  P  V  P  *  T  S  T  A  V  M  D  S  L  V  *  Q  R  S  H  R  I  L  Y  R  R  L  R  H  C  H  I  C  L  *  L  R  I  W  *  W  I  *  L  I  F  I  I  S  I  S  L  L  S  L  G  *  R  E  K  H  L  R  Q  R  L  E  R  R  Y  L  R  A  R  A  I  R  L  S  W  M  G  C  T  S  V  F  S  V  L  V  V  V  H  H  A  L  A  T  G  G  I  L  S  L  I  L  V  L  L  H  Y  S  M  P  I   : D  G  S  W  I  A  V  M  N  I  L  W  S  A  W  T  Q  L  M  M  N  S  S  F  I  A  A  T  L  F  *  T  V  L  V  L  A  Q  R  D  L  I  L  A  S  S  E  H  Q  A  P  G  D  G  A  L  S  L  H  S  A  V  *  C  T  S  L  F  C  *  H  *  F  W  R  T  S  R  R  *  F  S  K  *  F  M  H  R  S  *  F  A  F  *  D  F  F  L  V  L  G  C  C  P  S  P  S  P  V  *  I  W  D  S  F  V  H  R  A  A  L  F  E  M  K  G  A  S  H  L  K  Y  C  T  N  N  *  Y  D  S  *  S  E  A  N  M  *  *  Q  R  V  Y  T  N  L  *  T  D  L  S  *  K  I  M  I  S  I  N  I  R  L  K  L  Y  L  I  K  T  S  S  I  I  *  N  I  S  Y  I  I  D  G   </first_frame>
            <second_frame>  I  F  S  E  K  Q  E  S  D  F  Y  V  Y  V  I  R  R  *  R  A  V  I  S  M  A  T  G  L  I  R  R  A  I  Y  R  V  Q  S  S  S  P  A  A  R  L  L  V  A  R  A  H  A  S  D  T  K  S  Q  Q  V  Q  P  Q  V  V  S  N  L  P  M  E  S  R  *  P  R  E  T  R  A  P  R  I  Q  N  *  S  E  G  M  W  P  Y  G  L  R  R  P  N  Q  N  Q  E  *  S  *  P  F  T  N  L  Q  K  I  L  Q  R  R  D  L  W  V  L  C  H  E  H  R  R  L  *  W  T  R  L  F  D  K  D  L  I  G  F  C  I  D  D  Y  A  T  A  T  Y  V  C  D  *  G  F  G  S  G  Y  D  *  F  L  *  S  V  *  V  Y  *  A  L  A  E  E  K  N  T  C  A  N  A  W  K  G  D  T  S  E  Q  E  R  *  G  *  V  G  W  D  V  R  V  Y  S  L  C  L  L  *  Y  I  M  P  *  L  L  V  E  S  *  V  L  S  W  S  C  C  T  T  P  C  Q  *  :  M  D  H  G  *  P  *  *  T  Y  S  G  A  P  G  R  S  *  *  *  I  Q  A  L  S  L  P  H  Y  F  E  L  F  S  C  L  P  K  G  I  *  S  W  Q  A  Q  N  I  K  R  L  E  M  A  P  *  A  C  T  L  Q  C  S  V  P  V  Y  S  A  N  I  D  F  G  G  P  V  G  G  S  S  Q  N  N  L  C  T  D  R  N  L  L  S  E  I  F  F  W  C  *  G  V  A  L  P  R  A  L  C  E  Y  G  I  L  L  C  T  V  L  P  Y  S  R  *  K  V  H  L  T  *  N  I  V  L  T  I  S  M  I  A  E  V  K  Q  T  C  N  S  R  E  Y  I  Q  I  Y  E  L  I  Y  H  R  K  *  *  F  L  *  I  F  V  *  N  Y  T  S  *  K  L  H  Q  L  Y  K  T  F  L  I  L  S  M  V  </second_frame>
            <third_frame>   F  S  L  K  N  K  R  V  T  F  M  Y  M  *  Y  E  D  E  E  L  *  Y  Q  W  L  L  V  *  S  D  E  L  F  I  G  F  S  H  L  R  R  R  R  G  Y  L  L  P  E  L  T  L  R  T  P  N  P  S  R  S  N  L  K  S  F  Q  I  Y  R  W  N  P  D  N  P  G  K  P  E  L  Q  E  Y  K  I  D  L  K  E  C  G  P  M  V  L  D  A  L  I  K  I  K  N  E  V  D  P  S  P  T  F  R  R  S  C  R  E  G  I  C  G  S  C  A  M  N  I  D  G  C  N  G  L  A  C  L  T  K  I  S  S  D  S  V  S  T  I  T  P  L  P  H  M  F  V  I  K  D  L  V  V  D  M  T  N  F  Y  N  Q  Y  K  S  I  E  P  W  L  K  R  K  T  P  A  P  T  P  G  K  E  I  P  Q  S  K  S  D  K  A  K  L  D  G  M  Y  E  C  I  L  C  A  C  C  S  T  S  C  P  S  Y  W  W  N  P  E  S  Y  L  G  P  A  A  L  L  H  A  N  R :   W  I  M  D  S  R  D  E  H  T  L  E  R  L  D  A  V  N  D  E  F  K  L  Y  R  C  H  T  I  L  N  C  S  R  A  C  P  K  G  F  N  P  G  K  L  R  T  S  S  A  W  R  W  R  L  E  P  A  L  C  S  V  V  Y  Q  S  I  L  L  T  L  I  L  E  D  Q  *  E  V  V  L  K  I  I  Y  A  Q  I  V  I  C  F  L  R  F  F  F  G  A  R  V  L  P  F  P  E  P  C  V  N  M  G  F  F  C  A  P  C  C  L  I  R  D  E  R  C  I  S  P  E  I  L  Y  *  Q  L  V  *  *  L  K  *  S  K  H  V  I  A  E  S  I  Y  K  F  M  N  *  F  I  I  E  N  N  D  F  Y  K  Y  S  F  E  I  I  P  H  K  N  F  I  N  Y  I  K  H  F  L  Y  Y  R  W  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0203P08.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27548" stop="28173"/>
                    <exon start="29547" stop="29778"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>855</number_coding_nucleotides>
                  <number_encoded_amino_acids>285</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SDELFIGFSHLRRRRGYLLPELTLRTPNPSRSNLKSFQIYRWNPDNPGKPELQEYKIDLKECGPMVLDALIKIKNEVDPSPTFRRSCREGICGSCAMNIDGCNGLACLTKISSDSVSTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKTPAPTPGKEIPQSKSDKAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWIMDSRDEHTLERLDAVNDEFKLYRCHTILNCSRACPKGFNPGKLRTSSAWRWRLEPALCSVVYQSILLTLILEDQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="32522" PGL_stop="31109"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32522" e_stop="31109"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32522" e_stop="31109" e_length="1414"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32522" stop="31791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32522" stop="32015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32355" stop="31681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32331" stop="31901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324153" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32322" stop="31725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32322" stop="31919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32296" stop="31730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471145" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31763" stop="31109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371081" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31660" stop="31109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280332" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTATAATATAATCTATATAAATTAATACCATTCAAATGCATGCATTGTTAAATTAAAGTAGTCCCCACCATCTTCACTCTTCCCAAGTAGTAACAGAGAAGCCCAACTTTATTTTTCTCCGTAATAATCATTTGAAAGGCTTAAAAAAGCTCCACGCTGCTAAAAAAAAAGCCGGCTTTATTTGCGCCCCAATAGTATTCTTGACTTACAAACAAGGAACGAACAATTTTCTATTGTCGCCTGCAAGCTTATTCCTACATCCCATTTGTCTCCCTCTTTATATAACTGTTCCTCTTTTTTAACTATATTATTCTATATCGACCTCGATCAACAAGAACAAGAGCAAGAAAAAATGATGAAAATTACTAGGGAAAGCGAAGAAATTGTTCTCCTCGAAGAACAATACGATGAATTAGAAGACGAATATGATGAAGAAGCATTATCACTGTGTGATCTTCCGAACAATGAAGAGGACGAAAAGAAGGAAGAAGTTTCTAGAAGTACTAGCGTAGAAGGCGGACAATTAGAAGATTTTGATTTTAGCTCTTCTGGTGGTAATTTGTTGAAAGAATCAGAGATGTGTACGGCAGATGAAATTTTCTACAAAGGCCAAATATTACCGTTGCGTCATTCAATTAGTTTGCCAAGTGATCGGCGCAATTGTCATGATACAAATTCAAGCAGTAGAAGTAGCAGTATTCGAAGCCAACGTTCATCTAGCAGTGGCAGTTCATCTAATTTCAACACGAAATATCAGCCTAAAATTCGAAATCAATTTCATTCTCATCCTAGTCCAACACCTCAGGTTCGATTTTCTAAAGTTAGTTTTCAATCAAATGTCAACAATTCCACACGAAAATCAGCATTGTGGAGTCTATTTCGCGTTGGCCTAGTTACACCACCAGAAATTGCATTACAAGATCTGAAAAACAGAGGAAACAGGGATATTTCAGGAAGTCGAAATAGCACGAGCAGTAGTAGCAGCGGGAGCTTCGGCAATAATGATAATAAGATGAGAATTAAGAAAACGAAACAGAGGTTTTCTCTAGGCAGCTGTAAATGTTCAGCAAATGTGGTAGAAACAGTTCCAATCGTGAACAGTAGAAGTACAATTAAGAAAATAAGAAAAGCCACAGGGGACCATGAACATGAAGATAAGAAGGATTCATCAGAGAATATCAAATCGACAAAAAAGCAAGCAATGTCACGTCATCGAACGTTTGAGTGGTTAAAGCAACTTTCACTAGAAGGTCCATCAGATGAAACATAAAGATTTCAAAGTATCACGCATGCTTAGCTTCTTTTTTTTCTTCTTTTTTTCATGTAATGTAATGTAACTTTTTTTTTTTTTTGAGTAGTGGAATCATGAAGTTGATTAATTGAAGTAATTGAGGACGCAATTATAATGGTAGC</gDNA_template>
            <first_frame> F  I  I  *  S  I  *  I  N  T  I  Q  M  H  A  L  L  N  *  S  S  P  H  H  L  H  S  S  Q  V  V  T  E  K  P  N  F  I  F  L  R  N  N  H  L  K  G  L  K  K  L  H  A  A  K  K  K  A  G  F  I  C  A  P  I  V  F  L  T  Y  K  Q  G  T  N  N  F  L  L  S  P  A  S  L  F  L  H  P  I  C  L  P  L  Y  I  T  V  P  L  F  *  L  Y  Y  S  I  S  T  S  I  N  K  N  K  S  K  K  K  *  *  K  L  L  G  K  A  K  K  L  F  S  S  K  N  N  T  M  N  *  K  T  N  M  M  K  K  H  Y  H  C  V  I  F  R  T  M  K  R  T  K  R  R  K  K  F  L  E  V  L  A  *  K  A  D  N  *  K  I  L  I  L  A  L  L  V  V  I  C  *  K  N  Q  R  C  V  R  Q  M  K  F  S  T  K  A  K  Y  Y  R  C  V  I  Q  L  V  C  Q  V  I  G  A  I  V  M  I  Q  I  Q  A  V  E  V  A  V  F  E  A  N  V  H  L  A  V  A  V  H  L  I  S  T  R  N  I  S  L  K  F  E  I  N  F  I  L  I  L  V  Q  H  L  R  F  D  F  L  K  L  V  F  N  Q  M  S  T  I  P  H  E  N  Q  H  C  G  V  Y  F  A  L  A  *  L  H  H  Q  K  L  H  Y  K  I  *  K  T  E  E  T  G  I  F  Q  E  V  E  I  A  R  A  V  V  A  A  G  A  S  A  I  M  I  I  R  *  E  L  R  K  R  N  R  G  F  L  *  A  A  V  N  V  Q  Q  M  W  *  K  Q  F  Q  S  *  T  V  E  V  Q  L  R  K  *  E  K  P  Q  G  T  M  N  M  K  I  R  R  I  H  Q  R  I  S  N  R  Q  K  S  K  Q  C  H  V  I  E  R  L  S  G  *  S  N  F  H  *  K  V  H  Q  M  K  H  K  D  F  K  V  S  R  M  L  S  F  F  F  F  F  F  F  S  C  N  V  M  *  L  F  F  F  F  E  *  W  N  H  E  V  D  *  L  K  *  L  R  T  Q  L  *  W  *  </first_frame>
            <second_frame>  L  *  Y  N  L  Y  K  L  I  P  F  K  C  M  H  C  *  I  K  V  V  P  T  I  F  T  L  P  K  *  *  Q  R  S  P  T  L  F  F  S  V  I  I  I  *  K  A  *  K  S  S  T  L  L  K  K  K  P  A  L  F  A  P  Q  *  Y  S  *  L  T  N  K  E  R  T  I  F  Y  C  R  L  Q  A  Y  S  Y  I  P  F  V  S  L  F  I  *  L  F  L  F  F  N  Y  I  I  L  Y  R  P  R  S  T  R  T  R  A  R  K  N  D  E  N  Y  *  G  K  R  R  N  C  S  P  R  R  T  I  R  *  I  R  R  R  I  *  *  R  S  I  I  T  V  *  S  S  E  Q  *  R  G  R  K  E  G  R  S  F  *  K  Y  *  R  R  R  R  T  I  R  R  F  *  F  *  L  F  W  W  *  F  V  E  R  I  R  D  V  Y  G  R  *  N  F  L  Q  R  P  N  I  T  V  A  S  F  N  *  F  A  K  *  S  A  Q  L  S  *  Y  K  F  K  Q  *  K  *  Q  Y  S  K  P  T  F  I  *  Q  W  Q  F  I  *  F  Q  H  E  I  S  A  *  N  S  K  S  I  S  F  S  S  *  S  N  T  S  G  S  I  F  *  S  *  F  S  I  K  C  Q  Q  F  H  T  K  I  S  I  V  E  S  I  S  R  W  P  S  Y  T  T  R  N  C  I  T  R  S  E  K  Q  R  K  Q  G  Y  F  R  K  S  K  *  H  E  Q  *  *  Q  R  E  L  R  Q  *  *  *  *  D  E  N  *  E  N  E  T  E  V  F  S  R  Q  L  *  M  F  S  K  C  G  R  N  S  S  N  R  E  Q  *  K  Y  N  *  E  N  K  K  S  H  R  G  P  *  T  *  R  *  E  G  F  I  R  E  Y  Q  I  D  K  K  A  S  N  V  T  S  S  N  V  *  V  V  K  A  T  F  T  R  R  S  I  R  *  N  I  K  I  S  K  Y  H  A  C  L  A  S  F  F  S  S  F  F  H  V  M  *  C  N  F  F  F  F  L  S  S  G  I  M  K  L  I  N  *  S  N  *  G  R  N  Y  N  G  S </second_frame>
            <third_frame>   Y  N  I  I  Y  I  N  *  Y  H  S  N  A  C  I  V  K  L  K  *  S  P  P  S  S  L  F  P  S  S  N  R  E  A  Q  L  Y  F  S  P  *  *  S  F  E  R  L  K  K  A  P  R  C  *  K  K  S  R  L  Y  L  R  P  N  S  I  L  D  L  Q  T  R  N  E  Q  F  S  I  V  A  C  K  L  I  P  T  S  H  L  S  P  S  L  Y  N  C  S  S  F  L  T  I  L  F  Y  I  D  L  D  Q  Q  E  Q  E  Q  E  K  M  M  K  I  T  R  E  S  E  E  I  V  L  L  E  E  Q  Y  D  E  L  E  D  E  Y  D  E  E  A  L  S  L  C  D  L  P  N  N  E  E  D  E  K  K  E  E  V  S  R  S  T  S  V  E  G  G  Q  L  E  D  F  D  F  S  S  S  G  G  N  L  L  K  E  S  E  M  C  T  A  D  E  I  F  Y  K  G  Q  I  L  P  L  R  H  S  I  S  L  P  S  D  R  R  N  C  H  D  T  N  S  S  S  R  S  S  S  I  R  S  Q  R  S  S  S  S  G  S  S  S  N  F  N  T  K  Y  Q  P  K  I  R  N  Q  F  H  S  H  P  S  P  T  P  Q  V  R  F  S  K  V  S  F  Q  S  N  V  N  N  S  T  R  K  S  A  L  W  S  L  F  R  V  G  L  V  T  P  P  E  I  A  L  Q  D  L  K  N  R  G  N  R  D  I  S  G  S  R  N  S  T  S  S  S  S  S  G  S  F  G  N  N  D  N  K  M  R  I  K  K  T  K  Q  R  F  S  L  G  S  C  K  C  S  A  N  V  V  E  T  V  P  I  V  N  S  R  S  T  I  K  K  I  R  K  A  T  G  D  H  E  H  E  D  K  K  D  S  S  E  N  I  K  S  T  K  K  Q  A  M  S  R  H  R  T  F  E  W  L  K  Q  L  S  L  E  G  P  S  D  E  T  *  R  F  Q  S  I  T  H  A  *  L  L  F  F  L  L  F  F  M  *  C  N  V  T  F  F  F  F  *  V  V  E  S  *  S  *  L  I  E  V  I  E  D  A  I  I  M  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0203P08.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32358" stop="31252"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1104</number_coding_nucleotides>
                  <number_encoded_amino_acids>368</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKSRLYLRPNSILDLQTRNEQFSIVACKLIPTSHLSPSLYNCSSFLTILFYIDLDQQEQEQEKMMKITRESEEIVLLEEQYDELEDEYDEEALSLCDLPNNEEDEKKEEVSRSTSVEGGQLEDFDFSSSGGNLLKESEMCTADEIFYKGQILPLRHSISLPSDRRNCHDTNSSSRSSSIRSQRSSSSGSSSNFNTKYQPKIRNQFHSHPSPTPQVRFSKVSFQSNVNNSTRKSALWSLFRVGLVTPPEIALQDLKNRGNRDISGSRNSTSSSSSGSFGNNDNKMRIKKTKQRFSLGSCKCSANVVETVPIVNSRSTIKKIRKATGDHEHEDKKDSSENIKSTKKQAMSRHRTFEWLKQLSLEGPSDET*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="36023" PGL_stop="35524"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36023" e_stop="35524"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="36023" e_stop="35524" e_length="500"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36023" stop="35524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714981" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAATATTAATATAACAGAGAGGAGAAAGAAAAGAAATGGAAAAGCAAAGAGATAGTAATAAGGGATGTATAGATGAGAGAAAACTAGAAGGATTGCCAGTGGATACAAGTCCATATACACAGTATAAGGATTTGGAGGATTACAAGCAACAGGGTTATGGAACACAAGGCCATCAACAGCCCAATCCTGGGCGTGGTGCTGCCAGTTCCACCGACGCCCCAACCCTCGCAGGTGGTGGATCTGCTGAAGCTCAGCTTTCTGCTACTGACAACATCAATCGCCAGGGTGTTCCTTAATTAATTTCGTTAATTTTTAGTCGCATTTACAACAGTTATTCCTTTTTTTTACTTGGGTAAAATACGTATATGTAGAATAATAACAATAAGAACGTTCTGAATTAGTGATTCTAGATCTTAGATTCGTCCCTGTTTGGTGTTGTTTGTATGTTCCTTCCGTCGGCTTGTAACTTAATAAATATATTTTTCTAAAAATAAGTACTA</gDNA_template>
            <first_frame> *  Y  *  Y  N  R  E  E  K  E  K  K  W  K  S  K  E  I  V  I  R  D  V  *  M  R  E  N  *  K  D  C  Q  W  I  Q  V  H  I  H  S  I  R  I  W  R  I  T  S  N  R  V  M  E  H  K  A  I  N  S  P  I  L  G  V  V  L  P  V  P  P  T  P  Q  P  S  Q  V  V  D  L  L  K  L  S  F  L  L  L  T  T  S  I  A  R  V  F  L  N  *  F  R  *  F  L  V  A  F  T  T  V  I  P  F  F  Y  L  G  K  I  R  I  C  R  I  I  T  I  R  T  F  *  I  S  D  S  R  S  *  I  R  P  C  L  V  L  F  V  C  S  F  R  R  L  V  T  *  *  I  Y  F  S  K  N  K  Y   </first_frame>
            <second_frame>  N  I  N  I  T  E  R  R  K  K  R  N  G  K  A  K  R  *  *  *  G  M  Y  R  *  E  K  T  R  R  I  A  S  G  Y  K  S  I  Y  T  V  *  G  F  G  G  L  Q  A  T  G  L  W  N  T  R  P  S  T  A  Q  S  W  A  W  C  C  Q  F  H  R  R  P  N  P  R  R  W  W  I  C  *  S  S  A  F  C  Y  *  Q  H  Q  S  P  G  C  S  L  I  N  F  V  N  F  *  S  H  L  Q  Q  L  F  L  F  F  T  W  V  K  Y  V  Y  V  E  *  *  Q  *  E  R  S  E  L  V  I  L  D  L  R  F  V  P  V  W  C  C  L  Y  V  P  S  V  G  L  *  L  N  K  Y  I  F  L  K  I  S  T  </second_frame>
            <third_frame>   I  L  I  *  Q  R  G  E  R  K  E  M  E  K  Q  R  D  S  N  K  G  C  I  D  E  R  K  L  E  G  L  P  V  D  T  S  P  Y  T  Q  Y  K  D  L  E  D  Y  K  Q  Q  G  Y  G  T  Q  G  H  Q  Q  P  N  P  G  R  G  A  A  S  S  T  D  A  P  T  L  A  G  G  G  S  A  E  A  Q  L  S  A  T  D  N  I  N  R  Q  G  V  P  *  L  I  S  L  I  F  S  R  I  Y  N  S  Y  S  F  F  L  L  G  *  N  T  Y  M  *  N  N  N  N  K  N  V  L  N  *  *  F  *  I  L  D  S  S  L  F  G  V  V  C  M  F  L  P  S  A  C  N  L  I  N  I  F  F  *  K  *  V  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0203P08.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36009" stop="35728"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QRGERKEMEKQRDSNKGCIDERKLEGLPVDTSPYTQYKDLEDYKQQGYGTQGHQQPNPGRGAASSTDAPTLAGGGSAEAQLSATDNINRQGVP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0203P08.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35936" stop="35724"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KDCQWIQVHIHSIRIWRITSNRVMEHKAINSPILGVVLPVPPTPQPSQVVDLLKLSFLLLTTSIARVFLN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="35680" PGL_stop="36020"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35680" e_stop="36020"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="35680" e_stop="36020" e_length="341"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35680" stop="36005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35685" stop="36020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280790" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAAGGAATAACTGTTGTAAATGCGACTAAAAATTAACGAAATTAATTAAGGAACACCCTGGCGATTGATGTTGTCAGTAGCAGAAAGCTGAGCTTCAGCAGATCCACCACCTGCGAGGGTTGGGGCGTCGGTGGAACTGGCAGCACCACGCCCAGGATTGGGCTGTTGATGGCCTTGTGTTCCATAACCCTGTTGCTTGTAATCCTCCAAATCCTTATACTGTGTATATGGACTTGTATCCACTGGCAATCCTTCTAGTTTTCTCTCATCTATACATCCCTTATTACTATCTCTTTGCTTTTCCATTTCTTTTCTTTCTCCTCTCTGTTATATTAATA</gDNA_template>
            <first_frame> K  K  G  I  T  V  V  N  A  T  K  N  *  R  N  *  L  R  N  T  L  A  I  D  V  V  S  S  R  K  L  S  F  S  R  S  T  T  C  E  G  W  G  V  G  G  T  G  S  T  T  P  R  I  G  L  L  M  A  L  C  S  I  T  L  L  L  V  I  L  Q  I  L  I  L  C  I  W  T  C  I  H  W  Q  S  F  *  F  S  L  I  Y  T  S  L  I  T  I  S  L  L  F  H  F  F  S  F  S  S  L  L  Y  *   </first_frame>
            <second_frame>  K  K  E  *  L  L  *  M  R  L  K  I  N  E  I  N  *  G  T  P  W  R  L  M  L  S  V  A  E  S  *  A  S  A  D  P  P  P  A  R  V  G  A  S  V  E  L  A  A  P  R  P  G  L  G  C  *  W  P  C  V  P  *  P  C  C  L  *  S  S  K  S  L  Y  C  V  Y  G  L  V  S  T  G  N  P  S  S  F  L  S  S  I  H  P  L  L  L  S  L  C  F  S  I  S  F  L  S  P  L  C  Y  I  N  </second_frame>
            <third_frame>   K  R  N  N  C  C  K  C  D  *  K  L  T  K  L  I  K  E  H  P  G  D  *  C  C  Q  *  Q  K  A  E  L  Q  Q  I  H  H  L  R  G  L  G  R  R  W  N  W  Q  H  H  A  Q  D  W  A  V  D  G  L  V  F  H  N  P  V  A  C  N  P  P  N  P  Y  T  V  Y  M  D  L  Y  P  L  A  I  L  L  V  F  S  H  L  Y  I  P  Y  Y  Y  L  F  A  F  P  F  L  F  F  L  L  S  V  I  L  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0203P08.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35763" stop="36020"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKAELQQIHHLRGLGRRWNWQHHAQDWAVDGLVFHNPVACNPPNPYTVYMDLYPLAILLVFSHLYIPYYYLFAFPFLFFLLSVILI</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0203P08.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35728" stop="35940"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRNTLAIDVVSSRKLSFSRSTTCEGWGVGGTGSTTPRIGLLMALCSITLLLVILQILILCIWTCIHWQSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="41589" PGL_stop="36336"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41576" e_stop="41440"/>
            <exon e_start="41369" e_stop="41253"/>
            <exon e_start="40365" e_stop="40208"/>
            <exon e_start="39843" e_stop="39741"/>
            <exon e_start="38549" e_stop="38454"/>
            <exon e_start="37836" e_stop="37771"/>
            <exon e_start="37681" e_stop="37562"/>
            <exon e_start="36736" e_stop="36336"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.637" e_score="0.993"/>
          <exon-intron don_prob="0.998" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.383" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.942" e_score="0.983"/>
          <exon-intron don_prob="0.879" acc_prob="0.890" e_score="1.000"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="41576" e_stop="41440" e_length="137"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.637">
            <gDNA_intron_boundary i_start="41439" i_stop="41370" i_length="70"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41369" e_stop="41253" e_length="117"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.949">
            <gDNA_intron_boundary i_start="41252" i_stop="40366" i_length="887"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="40365" e_stop="40208" e_length="158"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.967">
            <gDNA_intron_boundary i_start="40207" i_stop="39844" i_length="364"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="39843" e_stop="39741" e_length="103"/>
          </exon>
          <intron i_serial="4" don_prob="0.952" acc_prob="0.968">
            <gDNA_intron_boundary i_start="39740" i_stop="38550" i_length="1191"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="38549" e_stop="38454" e_length="96"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.383">
            <gDNA_intron_boundary i_start="38453" i_stop="37837" i_length="617"/>
          </intron>
          <exon e_serial="6" e_score="0.983">
            <gDNA_exon_boundary e_start="37836" e_stop="37771" e_length="66"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.942">
            <gDNA_intron_boundary i_start="37770" i_stop="37682" i_length="89"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="37681" e_stop="37562" e_length="120"/>
          </exon>
          <intron i_serial="7" don_prob="0.879" acc_prob="0.890">
            <gDNA_intron_boundary i_start="37561" i_stop="36737" i_length="825"/>
          </intron>
          <exon e_serial="8" e_score="0.980">
            <gDNA_exon_boundary e_start="36736" e_stop="36336" e_length="401"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41576" stop="41440"/>
              <exon start="41369" stop="41253"/>
              <exon start="40365" stop="40208"/>
              <exon start="39843" stop="39741"/>
              <exon start="38549" stop="38454"/>
              <exon start="37836" stop="37771"/>
              <exon start="37681" stop="37653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41576" stop="41440"/>
              <exon start="41369" stop="41253"/>
              <exon start="40365" stop="40208"/>
              <exon start="39843" stop="39782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41575" stop="41440"/>
              <exon start="41369" stop="41253"/>
              <exon start="40365" stop="40208"/>
              <exon start="39843" stop="39741"/>
              <exon start="38549" stop="38454"/>
              <exon start="37836" stop="37771"/>
              <exon start="37681" stop="37562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37830" stop="37771"/>
              <exon start="37681" stop="37562"/>
              <exon start="36736" stop="36539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37666" stop="37562"/>
              <exon start="36736" stop="36539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37579" stop="37562"/>
              <exon start="36736" stop="36541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36736" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349058" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAGGAAGAAGATGAAGAGCAAAGGTAGATTAGTGGGACAAAGATGGCGGAGCATAGGGGGCTTACCTTCAATATTTCTGCTATGTCTTTTCTTGTTCTTCGCCGGTTTATTCGGTTCTACTCTCGTTTCTCATCAG : GATGTACAACTACTTACTGTACGGCCTAGGTCAAGGGTGCTTAAATCTGTGGAAGAATTTGATGTTTTGCCTAATGGCGACACTGGAGAACACTCCCTTACTTCCATCCCCTTCCAG : GTCTTAAGCTGGTTCCCACGTGCATTATACTTTCCCAATTTCGCAACTACAGAACAATGCCAAGGCATAATTAAGATGGCAAAGGCAGAACTGAAACCATCATCTTTGGCTCTCCGCAAAGGAGAAACAGCAGAAAATACCAAAGGAGTTAGAACAAG : TTCTGGTATGTTTATCAGTGCATCTGAAGACAAAACTGGAATTCTGGACCTCATTGAGGAGAAAATCGCAAAGGCGACTATGATCCCCAGGACACACGGAGAG : GCATTTAATGTTTTGCGGTACGAAATAGGCCAGAGTTATTATTCACATTATGATGCGTTTGATCCTTCTCAATATGGTCCTCAGAAGAGCCAAAGG : GTTGCATCCTTTTTGTTATATTTATCTGATGTGGAAGAAGGTGGAGAAACCATGTTCCCTTTCGAG : AATGCACAGAATATGGATGTTAATTATGACTTCCGCAAGTGTATTGGTCTGAAAGTGAAGCCGCGTAGAGGGGATGGACTACTATTTTACTCGCTGTTTCCAAATGGTACAATTGATCCG : ACATCTCTTCACGGGAGCTGTGCAGTAATCCGAGGTGAAAAATGGGTTGCCACAAAGTGGATCAGGGATCAAGAAATGGATGAATAAACGAGTACATGTCTGGAAGTGGTGTTAATATAATTCTTTCGTAATTTAATGTAGCCACTCACTGGAACCTTTGAGCGAATTTTACAGTAAATATATCTAGTGTTTGTTCATATTGATCTGTGTCAGTTAACCCTTAATACGTTACTTGAGTCTTGGTTGCTCCCATTACCCACAAAGCTCACCCCATCTTGCAGTAAAAAAGAAGTCTAATTGTAATGACCGTGCGAATGTTTTGTAATAGGATCAGATCACGTGTTTCAAAAGTGTTGTACTAACACAAATATTATTATGACGCTAAAAAGAATGTGTATAGA</gDNA_template>
            <first_frame> S  G  R  R  *  R  A  K  V  D  *  W  D  K  D  G  G  A  *  G  A  Y  L  Q  Y  F  C  Y  V  F  S  C  S  S  P  V  Y  S  V  L  L  S  F  L  I  R :   M  Y  N  Y  L  L  Y  G  L  G  Q  G  C  L  N  L  W  K  N  L  M  F  C  L  M  A  T  L  E  N  T  P  L  L  P  S  P  S  R :   S  *  A  G  S  H  V  H  Y  T  F  P  I  S  Q  L  Q  N  N  A  K  A  *  L  R  W  Q  R  Q  N  *  N  H  H  L  W  L  S  A  K  E  K  Q  Q  K  I  P  K  E  L  E  Q   : V  L  V  C  L  S  V  H  L  K  T  K  L  E  F  W  T  S  L  R  R  K  S  Q  R  R  L  *  S  P  G  H  T  E  R :   H  L  M  F  C  G  T  K  *  A  R  V  I  I  H  I  M  M  R  L  I  L  L  N  M  V  L  R  R  A  K  G :   L  H  P  F  C  Y  I  Y  L  M  W  K  K  V  E  K  P  C  S  L  S  R :   M  H  R  I  W  M  L  I  M  T  S  A  S  V  L  V  *  K  *  S  R  V  E  G  M  D  Y  Y  F  T  R  C  F  Q  M  V  Q  L  I  R :   H  L  F  T  G  A  V  Q  *  S  E  V  K  N  G  L  P  Q  S  G  S  G  I  K  K  W  M  N  K  R  V  H  V  W  K  W  C  *  Y  N  S  F  V  I  *  C  S  H  S  L  E  P  L  S  E  F  Y  S  K  Y  I  *  C  L  F  I  L  I  C  V  S  *  P  L  I  R  Y  L  S  L  G  C  S  H  Y  P  Q  S  S  P  H  L  A  V  K  K  K  S  N  C  N  D  R  A  N  V  L  *  *  D  Q  I  T  C  F  K  S  V  V  L  T  Q  I  L  L  *  R  *  K  E  C  V  *  </first_frame>
            <second_frame>  Q  E  E  D  E  E  Q  R  *  I  S  G  T  K  M  A  E  H  R  G  L  T  F  N  I  S  A  M  S  F  L  V  L  R  R  F  I  R  F  Y  S  R  F  S  S   : G  C  T  T  T  Y  C  T  A  *  V  K  G  A  *  I  C  G  R  I  *  C  F  A  *  W  R  H  W  R  T  L  P  Y  F  H  P  L  P   : G  L  K  L  V  P  T  C  I  I  L  S  Q  F  R  N  Y  R  T  M  P  R  H  N  *  D  G  K  G  R  T  E  T  I  I  F  G  S  P  Q  R  R  N  S  R  K  Y  Q  R  S  *  N  K  :  F  W  Y  V  Y  Q  C  I  *  R  Q  N  W  N  S  G  P  H  *  G  E  N  R  K  G  D  Y  D  P  Q  D  T  R  R   : G  I  *  C  F  A  V  R  N  R  P  E  L  L  F  T  L  *  C  V  *  S  F  S  I  W  S  S  E  E  P  K   : G  C  I  L  F  V  I  F  I  *  C  G  R  R  W  R  N  H  V  P  F  R   : E  C  T  E  Y  G  C  *  L  *  L  P  Q  V  Y  W  S  E  S  E  A  A  *  R  G  W  T  T  I  L  L  A  V  S  K  W  Y  N  *  S   : D  I  S  S  R  E  L  C  S  N  P  R  *  K  M  G  C  H  K  V  D  Q  G  S  R  N  G  *  I  N  E  Y  M  S  G  S  G  V  N  I  I  L  S  *  F  N  V  A  T  H  W  N  L  *  A  N  F  T  V  N  I  S  S  V  C  S  Y  *  S  V  S  V  N  P  *  Y  V  T  *  V  L  V  A  P  I  T  H  K  A  H  P  I  L  Q  *  K  R  S  L  I  V  M  T  V  R  M  F  C  N  R  I  R  S  R  V  S  K  V  L  Y  *  H  K  Y  Y  Y  D  A  K  K  N  V  Y  R </second_frame>
            <third_frame>   R  K  K  M  K  S  K  G  R  L  V  G  Q  R  W  R  S  I  G  G  L  P  S  I  F  L  L  C  L  F  L  F  F  A  G  L  F  G  S  T  L  V  S  H  Q  :  D  V  Q  L  L  T  V  R  P  R  S  R  V  L  K  S  V  E  E  F  D  V  L  P  N  G  D  T  G  E  H  S  L  T  S  I  P  F  Q  :  V  L  S  W  F  P  R  A  L  Y  F  P  N  F  A  T  T  E  Q  C  Q  G  I  I  K  M  A  K  A  E  L  K  P  S  S  L  A  L  R  K  G  E  T  A  E  N  T  K  G  V  R  T  S :   S  G  M  F  I  S  A  S  E  D  K  T  G  I  L  D  L  I  E  E  K  I  A  K  A  T  M  I  P  R  T  H  G  E  :  A  F  N  V  L  R  Y  E  I  G  Q  S  Y  Y  S  H  Y  D  A  F  D  P  S  Q  Y  G  P  Q  K  S  Q  R  :  V  A  S  F  L  L  Y  L  S  D  V  E  E  G  G  E  T  M  F  P  F  E  :  N  A  Q  N  M  D  V  N  Y  D  F  R  K  C  I  G  L  K  V  K  P  R  R  G  D  G  L  L  F  Y  S  L  F  P  N  G  T  I  D  P  :  T  S  L  H  G  S  C  A  V  I  R  G  E  K  W  V  A  T  K  W  I  R  D  Q  E  M  D  E  *  T  S  T  C  L  E  V  V  L  I  *  F  F  R  N  L  M  *  P  L  T  G  T  F  E  R  I  L  Q  *  I  Y  L  V  F  V  H  I  D  L  C  Q  L  T  L  N  T  L  L  E  S  W  L  L  P  L  P  T  K  L  T  P  S  C  S  K  K  E  V  *  L  *  *  P  C  E  C  F  V  I  G  S  D  H  V  F  Q  K  C  C  T  N  T  N  I  I  M  T  L  K  R  M  C  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0203P08.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41574" stop="41440"/>
                    <exon start="41369" stop="41253"/>
                    <exon start="40365" stop="40208"/>
                    <exon start="39843" stop="39741"/>
                    <exon start="38549" stop="38454"/>
                    <exon start="37836" stop="37771"/>
                    <exon start="37681" stop="37562"/>
                    <exon start="36736" stop="36650"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>879</number_coding_nucleotides>
                  <number_encoded_amino_acids>293</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKKMKSKGRLVGQRWRSIGGLPSIFLLCLFLFFAGLFGSTLVSHQDVQLLTVRPRSRVLKSVEEFDVLPNGDTGEHSLTSIPFQVLSWFPRALYFPNFATTEQCQGIIKMAKAELKPSSLALRKGETAENTKGVRTSSGMFISASEDKTGILDLIEEKIAKATMIPRTHGEAFNVLRYEIGQSYYSHYDAFDPSQYGPQKSQRVASFLLYLSDVEEGGETMFPFENAQNMDVNYDFRKCIGLKVKPRRGDGLLFYSLFPNGTIDPTSLHGSCAVIRGEKWVATKWIRDQEMDE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="38565" e_stop="38454"/>
            <exon e_start="37836" e_stop="37771"/>
            <exon e_start="37681" e_stop="37562"/>
            <exon e_start="36736" e_stop="36336"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.383" e_score="0.964"/>
          <exon-intron don_prob="0.998" acc_prob="0.942" e_score="0.983"/>
          <exon-intron don_prob="0.879" acc_prob="0.890" e_score="1.000"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="38565" e_stop="38454" e_length="112"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.383">
            <gDNA_intron_boundary i_start="38453" i_stop="37837" i_length="617"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="37836" e_stop="37771" e_length="66"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.942">
            <gDNA_intron_boundary i_start="37770" i_stop="37682" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="37681" e_stop="37562" e_length="120"/>
          </exon>
          <intron i_serial="3" don_prob="0.879" acc_prob="0.890">
            <gDNA_intron_boundary i_start="37561" i_stop="36737" i_length="825"/>
          </intron>
          <exon e_serial="4" e_score="0.980">
            <gDNA_exon_boundary e_start="36736" e_stop="36336" e_length="401"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38565" stop="38454"/>
              <exon start="37836" stop="37771"/>
              <exon start="37681" stop="37562"/>
              <exon start="36736" stop="36533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597678" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37830" stop="37771"/>
              <exon start="37681" stop="37562"/>
              <exon start="36736" stop="36539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37666" stop="37562"/>
              <exon start="36736" stop="36539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37579" stop="37562"/>
              <exon start="36736" stop="36541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36736" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349058" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTGTGCGTTTTTCAGGCATTTAATGTTTTGCGGTACGAAATAGGCCAGAGTTATTATTCACATTATGATGCGTTTGATCCTTCTCAATATGGTCCTCAGAAGAGCCAAAGG : GTTGCATCCTTTTTGTTATATTTATCTGATGTGGAAGAAGGTGGAGAAACCATGTTCCCTTTCGAG : AATGCACAGAATATGGATGTTAATTATGACTTCCGCAAGTGTATTGGTCTGAAAGTGAAGCCGCGTAGAGGGGATGGACTACTATTTTACTCGCTGTTTCCAAATGGTACAATTGATCCG : ACATCTCTTCACGGGAGCTGTGCAGTAATCCGAGGTGAAAAATGGGTTGCCACAAAGTGGATCAGGGATCAAGAAATGGATGAATAAACGAGTACATGTCTGGAAGTGGTGTTAATATAATTCTTTCGTAATTTAATGTAGCCACTCACTGGAACCTTTGAGCGAATTTTACAGTAAATATATCTAGTGTTTGTTCATATTGATCTGTGTCAGTTAACCCTTAATACGTTACTTGAGTCTTGGTTGCTCCCATTACCCACAAAGCTCACCCCATCTTGCAGTAAAAAAGAAGTCTAATTGTAATGACCGTGCGAATGTTTTGTAATAGGATCAGATCACGTGTTTCAAAAGTGTTGTACTAACACAAATATTATTATGACGCTAAAAAGAATGTGTATAGA</gDNA_template>
            <first_frame> P  V  R  F  S  G  I  *  C  F  A  V  R  N  R  P  E  L  L  F  T  L  *  C  V  *  S  F  S  I  W  S  S  E  E  P  K   : G  C  I  L  F  V  I  F  I  *  C  G  R  R  W  R  N  H  V  P  F  R   : E  C  T  E  Y  G  C  *  L  *  L  P  Q  V  Y  W  S  E  S  E  A  A  *  R  G  W  T  T  I  L  L  A  V  S  K  W  Y  N  *  S   : D  I  S  S  R  E  L  C  S  N  P  R  *  K  M  G  C  H  K  V  D  Q  G  S  R  N  G  *  I  N  E  Y  M  S  G  S  G  V  N  I  I  L  S  *  F  N  V  A  T  H  W  N  L  *  A  N  F  T  V  N  I  S  S  V  C  S  Y  *  S  V  S  V  N  P  *  Y  V  T  *  V  L  V  A  P  I  T  H  K  A  H  P  I  L  Q  *  K  R  S  L  I  V  M  T  V  R  M  F  C  N  R  I  R  S  R  V  S  K  V  L  Y  *  H  K  Y  Y  Y  D  A  K  K  N  V  Y  R </first_frame>
            <second_frame>  L  C  V  F  Q  A  F  N  V  L  R  Y  E  I  G  Q  S  Y  Y  S  H  Y  D  A  F  D  P  S  Q  Y  G  P  Q  K  S  Q  R  :  V  A  S  F  L  L  Y  L  S  D  V  E  E  G  G  E  T  M  F  P  F  E  :  N  A  Q  N  M  D  V  N  Y  D  F  R  K  C  I  G  L  K  V  K  P  R  R  G  D  G  L  L  F  Y  S  L  F  P  N  G  T  I  D  P  :  T  S  L  H  G  S  C  A  V  I  R  G  E  K  W  V  A  T  K  W  I  R  D  Q  E  M  D  E  *  T  S  T  C  L  E  V  V  L  I  *  F  F  R  N  L  M  *  P  L  T  G  T  F  E  R  I  L  Q  *  I  Y  L  V  F  V  H  I  D  L  C  Q  L  T  L  N  T  L  L  E  S  W  L  L  P  L  P  T  K  L  T  P  S  C  S  K  K  E  V  *  L  *  *  P  C  E  C  F  V  I  G  S  D  H  V  F  Q  K  C  C  T  N  T  N  I  I  M  T  L  K  R  M  C  I   </second_frame>
            <third_frame>   C  A  F  F  R  H  L  M  F  C  G  T  K  *  A  R  V  I  I  H  I  M  M  R  L  I  L  L  N  M  V  L  R  R  A  K  G :   L  H  P  F  C  Y  I  Y  L  M  W  K  K  V  E  K  P  C  S  L  S  R :   M  H  R  I  W  M  L  I  M  T  S  A  S  V  L  V  *  K  *  S  R  V  E  G  M  D  Y  Y  F  T  R  C  F  Q  M  V  Q  L  I  R :   H  L  F  T  G  A  V  Q  *  S  E  V  K  N  G  L  P  Q  S  G  S  G  I  K  K  W  M  N  K  R  V  H  V  W  K  W  C  *  Y  N  S  F  V  I  *  C  S  H  S  L  E  P  L  S  E  F  Y  S  K  Y  I  *  C  L  F  I  L  I  C  V  S  *  P  L  I  R  Y  L  S  L  G  C  S  H  Y  P  Q  S  S  P  H  L  A  V  K  K  K  S  N  C  N  D  R  A  N  V  L  *  *  D  Q  I  T  C  F  K  S  V  V  L  T  Q  I  L  L  *  R  *  K  E  C  V  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0203P08.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38564" stop="38454"/>
                    <exon start="37836" stop="37771"/>
                    <exon start="37681" stop="37562"/>
                    <exon start="36736" stop="36650"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>381</number_coding_nucleotides>
                  <number_encoded_amino_acids>127</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LCVFQAFNVLRYEIGQSYYSHYDAFDPSQYGPQKSQRVASFLLYLSDVEEGGETMFPFENAQNMDVNYDFRKCIGLKVKPRRGDGLLFYSLFPNGTIDPTSLHGSCAVIRGEKWVATKWIRDQEMDE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="41589" e_stop="41440"/>
            <exon e_start="41369" e_stop="41253"/>
            <exon e_start="40365" e_stop="40208"/>
            <exon e_start="39843" e_stop="39741"/>
            <exon e_start="38985" e_stop="38955"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.637" e_score="0.942"/>
          <exon-intron don_prob="0.998" acc_prob="0.949" e_score="0.957"/>
          <exon-intron don_prob="0.997" acc_prob="0.967" e_score="0.968"/>
          <exon-intron don_prob="0.952" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.942">
            <gDNA_exon_boundary e_start="41589" e_stop="41440" e_length="150"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.637">
            <gDNA_intron_boundary i_start="41439" i_stop="41370" i_length="70"/>
          </intron>
          <exon e_serial="2" e_score="0.957">
            <gDNA_exon_boundary e_start="41369" e_stop="41253" e_length="117"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.949">
            <gDNA_intron_boundary i_start="41252" i_stop="40366" i_length="887"/>
          </intron>
          <exon e_serial="3" e_score="0.968">
            <gDNA_exon_boundary e_start="40365" e_stop="40208" e_length="158"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.967">
            <gDNA_intron_boundary i_start="40207" i_stop="39844" i_length="364"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="39843" e_stop="39741" e_length="103"/>
          </exon>
          <intron i_serial="4" don_prob="0.952" acc_prob="0.000">
            <gDNA_intron_boundary i_start="39740" i_stop="38986" i_length="755"/>
          </intron>
          <exon e_serial="5" e_score="0.968">
            <gDNA_exon_boundary e_start="38985" e_stop="38955" e_length="31"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41589" stop="41440"/>
              <exon start="41369" stop="41253"/>
              <exon start="40365" stop="40208"/>
              <exon start="39843" stop="39741"/>
              <exon start="38985" stop="38955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41576" stop="41440"/>
              <exon start="41369" stop="41253"/>
              <exon start="40365" stop="40208"/>
              <exon start="39843" stop="39782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441740" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCGGATTCGCCATCAGGAAGAAGATGAAGAGCAAAGGTAGATTAGTGGGACAAAGATGGCGGAGCATAGGGGGCTTACCTTCAATATTTCTGCTATGTCTTTTCTTGTTCTTCGCCGGTTTATTCGGTTCTACTCTCGTTTCTCATCAG : GATGTACAACTACTTACTGTACGGCCTAGGTCAAGGGTGCTTAAATCTGTGGAAGAATTTGATGTTTTGCCTAATGGCGACACTGGAGAACACTCCCTTACTTCCATCCCCTTCCAG : GTCTTAAGCTGGTTCCCACGTGCATTATACTTTCCCAATTTCGCAACTACAGAACAATGCCAAGGCATAATTAAGATGGCAAAGGCAGAACTGAAACCATCATCTTTGGCTCTCCGCAAAGGAGAAACAGCAGAAAATACCAAAGGAGTTAGAACAAG : TTCTGGTATGTTTATCAGTGCATCTGAAGACAAAACTGGAATTCTGGACCTCATTGAGGAGAAAATCGCAAAGGCGACTATGATCCCCAGGACACACGGAGAG : CTGTCACATGGTCTAGTCTGTATGTATTCTA</gDNA_template>
            <first_frame> I  G  F  A  I  R  K  K  M  K  S  K  G  R  L  V  G  Q  R  W  R  S  I  G  G  L  P  S  I  F  L  L  C  L  F  L  F  F  A  G  L  F  G  S  T  L  V  S  H  Q  :  D  V  Q  L  L  T  V  R  P  R  S  R  V  L  K  S  V  E  E  F  D  V  L  P  N  G  D  T  G  E  H  S  L  T  S  I  P  F  Q  :  V  L  S  W  F  P  R  A  L  Y  F  P  N  F  A  T  T  E  Q  C  Q  G  I  I  K  M  A  K  A  E  L  K  P  S  S  L  A  L  R  K  G  E  T  A  E  N  T  K  G  V  R  T  S :   S  G  M  F  I  S  A  S  E  D  K  T  G  I  L  D  L  I  E  E  K  I  A  K  A  T  M  I  P  R  T  H  G  E  :  L  S  H  G  L  V  C  M  Y  S  </first_frame>
            <second_frame>  S  D  S  P  S  G  R  R  *  R  A  K  V  D  *  W  D  K  D  G  G  A  *  G  A  Y  L  Q  Y  F  C  Y  V  F  S  C  S  S  P  V  Y  S  V  L  L  S  F  L  I  R :   M  Y  N  Y  L  L  Y  G  L  G  Q  G  C  L  N  L  W  K  N  L  M  F  C  L  M  A  T  L  E  N  T  P  L  L  P  S  P  S  R :   S  *  A  G  S  H  V  H  Y  T  F  P  I  S  Q  L  Q  N  N  A  K  A  *  L  R  W  Q  R  Q  N  *  N  H  H  L  W  L  S  A  K  E  K  Q  Q  K  I  P  K  E  L  E  Q   : V  L  V  C  L  S  V  H  L  K  T  K  L  E  F  W  T  S  L  R  R  K  S  Q  R  R  L  *  S  P  G  H  T  E  S :   C  H  M  V  *  S  V  C  I  L </second_frame>
            <third_frame>   R  I  R  H  Q  E  E  D  E  E  Q  R  *  I  S  G  T  K  M  A  E  H  R  G  L  T  F  N  I  S  A  M  S  F  L  V  L  R  R  F  I  R  F  Y  S  R  F  S  S   : G  C  T  T  T  Y  C  T  A  *  V  K  G  A  *  I  C  G  R  I  *  C  F  A  *  W  R  H  W  R  T  L  P  Y  F  H  P  L  P   : G  L  K  L  V  P  T  C  I  I  L  S  Q  F  R  N  Y  R  T  M  P  R  H  N  *  D  G  K  G  R  T  E  T  I  I  F  G  S  P  Q  R  R  N  S  R  K  Y  Q  R  S  *  N  K  :  F  W  Y  V  Y  Q  C  I  *  R  Q  N  W  N  S  G  P  H  *  G  E  N  R  K  G  D  Y  D  P  Q  D  T  R  R   : A  V  T  W  S  S  L  Y  V  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0203P08.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41589" stop="41440"/>
                    <exon start="41369" stop="41253"/>
                    <exon start="40365" stop="40208"/>
                    <exon start="39843" stop="39741"/>
                    <exon start="38985" stop="38956"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>558</number_coding_nucleotides>
                  <number_encoded_amino_acids>186</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IGFAIRKKMKSKGRLVGQRWRSIGGLPSIFLLCLFLFFAGLFGSTLVSHQDVQLLTVRPRSRVLKSVEEFDVLPNGDTGEHSLTSIPFQVLSWFPRALYFPNFATTEQCQGIIKMAKAELKPSSLALRKGETAENTKGVRTSSGMFISASEDKTGILDLIEEKIAKATMIPRTHGELSHGLVCMYS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="47273" PGL_stop="50325"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47273" e_stop="47597"/>
            <exon e_start="48083" e_stop="48235"/>
            <exon e_start="48412" e_stop="48489"/>
            <exon e_start="48658" e_stop="48753"/>
            <exon e_start="49593" e_stop="49628"/>
            <exon e_start="49742" e_stop="49923"/>
            <exon e_start="50001" e_stop="50325"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.115" e_score="0.997"/>
          <exon-intron don_prob="0.997" acc_prob="0.849" e_score="1.000"/>
          <exon-intron don_prob="0.831" acc_prob="0.341" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.334" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="47273" e_stop="47597" e_length="325"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.115">
            <gDNA_intron_boundary i_start="47598" i_stop="48082" i_length="485"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="48083" e_stop="48235" e_length="153"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.849">
            <gDNA_intron_boundary i_start="48236" i_stop="48411" i_length="176"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="48412" e_stop="48489" e_length="78"/>
          </exon>
          <intron i_serial="3" don_prob="0.831" acc_prob="0.341">
            <gDNA_intron_boundary i_start="48490" i_stop="48657" i_length="168"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="48658" e_stop="48753" e_length="96"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.995">
            <gDNA_intron_boundary i_start="48754" i_stop="49592" i_length="839"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="49593" e_stop="49628" e_length="36"/>
          </exon>
          <intron i_serial="5" don_prob="0.959" acc_prob="0.334">
            <gDNA_intron_boundary i_start="49629" i_stop="49741" i_length="113"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="49742" e_stop="49923" e_length="182"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="49924" i_stop="50000" i_length="77"/>
          </intron>
          <exon e_serial="7" e_score="0.987">
            <gDNA_exon_boundary e_start="50001" e_stop="50325" e_length="325"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47273" stop="47597"/>
              <exon start="48083" stop="48235"/>
              <exon start="48412" stop="48489"/>
              <exon start="48658" stop="48669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47288" stop="47597"/>
              <exon start="48083" stop="48235"/>
              <exon start="48412" stop="48489"/>
              <exon start="48658" stop="48753"/>
              <exon start="49593" stop="49626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730712" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47294" stop="47597"/>
              <exon start="48083" stop="48235"/>
              <exon start="48412" stop="48417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47296" stop="47505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47296" stop="47504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47297" stop="47505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47297" stop="47504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47299" stop="47597"/>
              <exon start="48083" stop="48235"/>
              <exon start="48412" stop="48489"/>
              <exon start="48658" stop="48753"/>
              <exon start="49593" stop="49628"/>
              <exon start="49742" stop="49826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47300" stop="47504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47308" stop="47597"/>
              <exon start="48083" stop="48235"/>
              <exon start="48412" stop="48489"/>
              <exon start="48658" stop="48744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47329" stop="47597"/>
              <exon start="48083" stop="48235"/>
              <exon start="48412" stop="48489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47331" stop="47597"/>
              <exon start="48083" stop="48235"/>
              <exon start="48412" stop="48489"/>
              <exon start="48658" stop="48745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47352" stop="47597"/>
              <exon start="48083" stop="48235"/>
              <exon start="48412" stop="48489"/>
              <exon start="48658" stop="48749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47352" stop="47597"/>
              <exon start="48083" stop="48235"/>
              <exon start="48412" stop="48489"/>
              <exon start="48658" stop="48705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47352" stop="47530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47354" stop="47597"/>
              <exon start="48083" stop="48235"/>
              <exon start="48412" stop="48489"/>
              <exon start="48658" stop="48676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47356" stop="47597"/>
              <exon start="48083" stop="48235"/>
              <exon start="48412" stop="48489"/>
              <exon start="48658" stop="48753"/>
              <exon start="49593" stop="49628"/>
              <exon start="49742" stop="49923"/>
              <exon start="50001" stop="50120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47357" stop="47597"/>
              <exon start="48083" stop="48235"/>
              <exon start="48412" stop="48489"/>
              <exon start="48658" stop="48753"/>
              <exon start="49593" stop="49628"/>
              <exon start="49742" stop="49923"/>
              <exon start="50001" stop="50080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47365" stop="47597"/>
              <exon start="48083" stop="48235"/>
              <exon start="48412" stop="48489"/>
              <exon start="48658" stop="48753"/>
              <exon start="49593" stop="49628"/>
              <exon start="49742" stop="49923"/>
              <exon start="50001" stop="50097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47365" stop="47597"/>
              <exon start="48083" stop="48235"/>
              <exon start="48412" stop="48489"/>
              <exon start="48658" stop="48753"/>
              <exon start="49593" stop="49628"/>
              <exon start="49742" stop="49876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729298" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47380" stop="47597"/>
              <exon start="48083" stop="48235"/>
              <exon start="48412" stop="48489"/>
              <exon start="48658" stop="48753"/>
              <exon start="49593" stop="49628"/>
              <exon start="49742" stop="49923"/>
              <exon start="50001" stop="50079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47381" stop="47597"/>
              <exon start="48083" stop="48235"/>
              <exon start="48412" stop="48489"/>
              <exon start="48658" stop="48753"/>
              <exon start="49593" stop="49628"/>
              <exon start="49742" stop="49923"/>
              <exon start="50001" stop="50095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47382" stop="47597"/>
              <exon start="48083" stop="48235"/>
              <exon start="48412" stop="48489"/>
              <exon start="48658" stop="48753"/>
              <exon start="49593" stop="49628"/>
              <exon start="49742" stop="49923"/>
              <exon start="50001" stop="50115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47400" stop="47597"/>
              <exon start="48083" stop="48235"/>
              <exon start="48412" stop="48489"/>
              <exon start="48658" stop="48753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348117" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47400" stop="47597"/>
              <exon start="48083" stop="48235"/>
              <exon start="48412" stop="48489"/>
              <exon start="48658" stop="48741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47431" stop="47597"/>
              <exon start="48083" stop="48235"/>
              <exon start="48412" stop="48489"/>
              <exon start="48658" stop="48753"/>
              <exon start="49593" stop="49628"/>
              <exon start="49742" stop="49923"/>
              <exon start="50001" stop="50147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47431" stop="47597"/>
              <exon start="48083" stop="48235"/>
              <exon start="48412" stop="48489"/>
              <exon start="48658" stop="48753"/>
              <exon start="49593" stop="49628"/>
              <exon start="49742" stop="49923"/>
              <exon start="50001" stop="50044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47442" stop="47597"/>
              <exon start="48083" stop="48235"/>
              <exon start="48412" stop="48489"/>
              <exon start="48658" stop="48753"/>
              <exon start="49593" stop="49628"/>
              <exon start="49742" stop="49923"/>
              <exon start="50001" stop="50141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47492" stop="47597"/>
              <exon start="48083" stop="48235"/>
              <exon start="48412" stop="48489"/>
              <exon start="48658" stop="48753"/>
              <exon start="49593" stop="49628"/>
              <exon start="49742" stop="49816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48169" stop="48235"/>
              <exon start="48412" stop="48489"/>
              <exon start="48658" stop="48753"/>
              <exon start="49593" stop="49628"/>
              <exon start="49742" stop="49914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291353" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48437" stop="48489"/>
              <exon start="48658" stop="48753"/>
              <exon start="49593" stop="49628"/>
              <exon start="49742" stop="49923"/>
              <exon start="50001" stop="50315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577461" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48478" stop="48489"/>
              <exon start="48658" stop="48753"/>
              <exon start="49593" stop="49628"/>
              <exon start="49742" stop="49923"/>
              <exon start="50001" stop="50259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48478" stop="48489"/>
              <exon start="48658" stop="48753"/>
              <exon start="49593" stop="49628"/>
              <exon start="49742" stop="49923"/>
              <exon start="50001" stop="50259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49593" stop="49628"/>
              <exon start="49742" stop="49923"/>
              <exon start="50001" stop="50280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49807" stop="49923"/>
              <exon start="50001" stop="50315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49921" stop="49923"/>
              <exon start="50001" stop="50325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222654" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTTTCCATCACGTATGATGCATGGTCAAAAAAAAAAAAGAACTTCTATCTAGCTACTTTTTCTTCTGAATTCTATGGTTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG : GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG : GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG : GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAG : ATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAG : GTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAG : GAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGAAGGCCAGTTTACTGCAGAGATAGGTATTATCGTGCATTGGCCGGTGGACAGTACTGCAAATGGGAAGACTTAGTTAAATAAGAGGATATATATAAGTGAAGAAAGCTACAGTTAAATTCTGTGATTGCTCAAAAGATCTGTACAATTGAGCCTCTTCTTATAATTTTAACGAAGAAATTTTGATGTTTTATGCATTAGATAATGCGCATGCAAAGAACAAAAGAAAGAGAATCATAACCCAAA</gDNA_template>
            <first_frame> N  F  P  S  R  M  M  H  G  Q  K  K  K  R  T  S  I  *  L  L  F  L  L  N  S  M  V  A  R  K  F  T  N  A  K  A  K  F  I  W  L  H  S  F  *  S  D  R  S  Q  Q  K  L  P  L  V  D  H  F  I  E  Q  S  N  D  C  M  S  E  E  H  S  S  *  S  P  E  R  W  D  E  R  W  H  E  W  Q  W  I  R  W  S  *  L  G  P  R  L  G  N  *  G  A  I  *  T  K  A   : G  E  *  V  L  I  S  E  R  *  N  F  I  L  L  G  R  T  G  S  R  G  L  L  P  T  S  R  G  T  L  V  S  H  F  R  S  F  G  S  T  Y  C  C  C  K  L  Q  S  F  K   : G  S  F  K  I  S  P  G  C  K  Y  G  D  S  F  S  C  C  T  D  C  P  K  N  L  S   : G  M  E  L  C  W  R  *  A  F  I  S  S  Y  T  L  *  R  D  W  M  V  *  W  A  D  V  G  E  A  P  R   : D  L  S  S  G  *  A  V  G  I  L  *   : G  E  T  S  H  *  N  A  E  A  N  A  S  W  N  R  G  F  A  C  C  S  S  L  I  I  H  I  C  N  T  S  R  R  F  F  P  Q  Y  F  H  N  K  R  E  L  I  E  F  H  L  N  K  Q  H  K  *  T  R  H  Q  :  E  R  R  T  V  A  L  A  T  G  S  Q  G  G  R  *  S  S  K  S  C  R  *  S  S  *  W  K  A  S  L  L  Q  R  *  V  L  S  C  I  G  R  W  T  V  L  Q  M  G  R  L  S  *  I  R  G  Y  I  *  V  K  K  A  T  V  K  F  C  D  C  S  K  D  L  Y  N  *  A  S  S  Y  N  F  N  E  E  I  L  M  F  Y  A  L  D  N  A  H  A  K  N  K  R  K  R  I  I  T  Q  </first_frame>
            <second_frame>  I  F  H  H  V  *  C  M  V  K  K  K  K  E  L  L  S  S  Y  F  F  F  *  I  L  W  L  Q  E  N  S  Q  M  L  R  L  N  L  Y  G  S  I  V  S  S  P  I  E  V  N  K  S  C  R  S  W  I  I  L  S  N  K  A  T  I  V  C  R  R  N  I  R  V  K  A  L  K  D  G  M  N  G  G  T  N  G  S  G  L  G  G  R  S  W  D  P  G  L  E  I  E  V  P  F  E  Q  R  P  :  V  N  E  Y  S  S  L  K  D  E  T  L  Y  S  W  A  E  L  G  P  G  A  F  F  L  R  L  G  G  L  W  L  V  T  F  A  V  L  G  V  P  I  A  A  A  S  F  N  P  S  K  :  D  P  L  R  F  L  L  A  A  S  T  G  T  L  F  L  V  A  L  I  V  L  R  I  Y  L  :  G  W  S  Y  V  G  D  R  L  L  S  A  V  I  P  Y  E  E  T  G  W  Y  D  G  Q  M  W  V  K  P  P  E  :  I  L  A  R  D  R  L  L  G  S  Y  K  :  V  K  P  V  I  K  M  L  K  Q  T  L  V  G  T  G  A  L  L  V  A  A  V  S  L  F  I  F  A  T  P  V  E  D  F  F  R  N  T  F  T  T  N  E  N  S  L  S  S  T  S  T  N  S  T  N  K  L  G  I  R :   K  E  E  L  L  R  L  P  L  E  V  K  E  D  D  D  L  A  K  A  A  A  E  A  A  D  G  R  P  V  Y  C  R  D  R  Y  Y  R  A  L  A  G  G  Q  Y  C  K  W  E  D  L  V  K  *  E  D  I  Y  K  *  R  K  L  Q  L  N  S  V  I  A  Q  K  I  C  T  I  E  P  L  L  I  I  L  T  K  K  F  *  C  F  M  H  *  I  M  R  M  Q  R  T  K  E  R  E  S  *  P  K </second_frame>
            <third_frame>   F  S  I  T  Y  D  A  W  S  K  K  K  K  N  F  Y  L  A  T  F  S  S  E  F  Y  G  C  K  K  I  H  K  C  *  G  *  I  Y  M  A  P  *  F  L  V  R  *  K  S  T  K  A  A  A  R  G  S  F  Y  R  T  K  Q  R  L  Y  V  G  G  T  F  E  L  K  P  *  K  M  G  *  T  V  A  R  M  A  V  D  *  V  V  V  V  G  T  Q  A  W  K  L  R  C  H  L  N  K  G  R :   *  M  S  T  H  L  *  K  M  K  L  Y  T  L  G  Q  N  W  V  Q  G  P  S  S  Y  V  S  G  D  F  G  *  S  L  S  Q  F  W  E  Y  L  L  L  L  Q  A  S  I  L  Q  R :   I  L  *  D  F  S  W  L  Q  V  R  G  L  F  F  L  L  H  *  L  S  *  E  F  I  W :   D  G  A  M  L  E  I  G  F  Y  Q  Q  L  Y  L  M  K  R  L  D  G  M  M  G  R  C  G  *  S  P  Q  R :   S  *  L  G  I  G  C  W  D  L  I  R :   *  N  Q  S  L  K  C  *  S  K  R  *  L  E  Q  G  L  C  L  L  Q  Q  S  H  Y  S  Y  L  Q  H  Q  *  K  I  F  S  A  I  L  S  Q  Q  T  R  T  H  *  V  P  P  Q  Q  T  A  Q  I  N  *  A  S   : G  K  K  N  C  C  A  C  H  W  K  S  R  R  T  M  I  *  Q  K  L  P  L  K  Q  L  M  E  G  Q  F  T  A  E  I  G  I  I  V  H  W  P  V  D  S  T  A  N  G  K  T  *  L  N  K  R  I  Y  I  S  E  E  S  Y  S  *  I  L  *  L  L  K  R  S  V  Q  L  S  L  F  L  *  F  *  R  R  N  F  D  V  L  C  I  R  *  C  A  C  K  E  Q  K  K  E  N  H  N  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0203P08.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47343" stop="47597"/>
                    <exon start="48083" stop="48235"/>
                    <exon start="48412" stop="48489"/>
                    <exon start="48658" stop="48753"/>
                    <exon start="49593" stop="49628"/>
                    <exon start="49742" stop="49923"/>
                    <exon start="50001" stop="50163"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>960</number_coding_nucleotides>
                  <number_encoded_amino_acids>320</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILWLQENSQMLRLNLYGSIVSSPIEVNKSCRSWIILSNKATIVCRRNIRVKALKDGMNGGTNGSGLGGRSWDPGLEIEVPFEQRPVNEYSSLKDETLYSWAELGPGAFFLRLGGLWLVTFAVLGVPIAAASFNPSKDPLRFLLAASTGTLFLVALIVLRIYLGWSYVGDRLLSAVIPYEETGWYDGQMWVKPPEILARDRLLGSYKVKPVIKMLKQTLVGTGALLVAAVSLFIFATPVEDFFRNTFTTNENSLSSTSTNSTNKLGIRKEELLRLPLEVKEDDDLAKAAAEAADGRPVYCRDRYYRALAGGQYCKWEDLVK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="55445" PGL_stop="54957"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55445" e_stop="54957"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="55445" e_stop="54957" e_length="489"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55445" stop="54957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253292" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATCACAACTTTCAAGTTTGGTTTTTTGGTTAGAGTTCGTTAACAGGCAAAAAGAAGCTTAATCCGAATGATGGCAAGAATTATATAGATATATAATGATATTAGTTAGTAAACCAACTACCAAATGTATGCGTAATTTTTTTTTCTTTTTTGTATATTAAGTTGTGGTGCATAGTGTTTCATCCTTAACTAGAGATTTTATGTTCGAGCTCAAGTATGAAAGAAAATTTTGTTGGGAGCATCACCTCGAATGGATCTTACAAAGCGCAATTCAAATTCGATCGAAGCTCCAATACGGATTTTGAACACTTTGGCCGAAAAAAAAAGCTTTTTGGATATTTTCTTTCTTTCTTTGTAGGATACATGCAAGAAAATATGTATCGACAGTTTTCTCTTTATATGTCCTATTGATTGTAGTTACCTTGAAGATTTTGTACAAGGCTCCATTTGGGAATATTTTGCAAATTATCTTATCATGTTTGTTATATA</gDNA_template>
            <first_frame> Y  H  N  F  Q  V  W  F  F  G  *  S  S  L  T  G  K  K  K  L  N  P  N  D  G  K  N  Y  I  D  I  *  *  Y  *  L  V  N  Q  L  P  N  V  C  V  I  F  F  S  F  L  Y  I  K  L  W  C  I  V  F  H  P  *  L  E  I  L  C  S  S  S  S  M  K  E  N  F  V  G  S  I  T  S  N  G  S  Y  K  A  Q  F  K  F  D  R  S  S  N  T  D  F  E  H  F  G  R  K  K  K  L  F  G  Y  F  L  S  F  F  V  G  Y  M  Q  E  N  M  Y  R  Q  F  S  L  Y  M  S  Y  *  L  *  L  P  *  R  F  C  T  R  L  H  L  G  I  F  C  K  L  S  Y  H  V  C  Y  I </first_frame>
            <second_frame>  I  T  T  F  K  F  G  F  L  V  R  V  R  *  Q  A  K  R  S  L  I  R  M  M  A  R  I  I  *  I  Y  N  D  I  S  *  *  T  N  Y  Q  M  Y  A  *  F  F  F  L  F  C  I  L  S  C  G  A  *  C  F  I  L  N  *  R  F  Y  V  R  A  Q  V  *  K  K  I  L  L  G  A  S  P  R  M  D  L  T  K  R  N  S  N  S  I  E  A  P  I  R  I  L  N  T  L  A  E  K  K  S  F  L  D  I  F  F  L  S  L  *  D  T  C  K  K  I  C  I  D  S  F  L  F  I  C  P  I  D  C  S  Y  L  E  D  F  V  Q  G  S  I  W  E  Y  F  A  N  Y  L  I  M  F  V  I   </second_frame>
            <third_frame>   S  Q  L  S  S  L  V  F  W  L  E  F  V  N  R  Q  K  E  A  *  S  E  *  W  Q  E  L  Y  R  Y  I  M  I  L  V  S  K  P  T  T  K  C  M  R  N  F  F  F  F  F  V  Y  *  V  V  V  H  S  V  S  S  L  T  R  D  F  M  F  E  L  K  Y  E  R  K  F  C  W  E  H  H  L  E  W  I  L  Q  S  A  I  Q  I  R  S  K  L  Q  Y  G  F  *  T  L  W  P  K  K  K  A  F  W  I  F  S  F  F  L  C  R  I  H  A  R  K  Y  V  S  T  V  F  S  L  Y  V  L  L  I  V  V  T  L  K  I  L  Y  K  A  P  F  G  N  I  L  Q  I  I  L  S  C  L  L  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0203P08.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55256" stop="55035"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LEILCSSSSMKENFVGSITSNGSYKAQFKFDRSSNTDFEHFGRKKKLFGYFLSFFVGYMQENMYRQFSLYMSY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="57404" PGL_stop="59108"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57404" e_stop="59108"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="57404" e_stop="59108" e_length="1705"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57404" stop="58171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554213" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57659" stop="58535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57711" stop="58447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57895" stop="58805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57935" stop="58805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57936" stop="58651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58254" stop="59108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58254" stop="59077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705470" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCCTTTTTGGTTATGCTTCAGGAACTGCTCGTGGAATGGCTTATCGTGCCAGAGTTGCCGTCTACAAGGTTTGCTGGCTTGGGAAATGCTTTGGCCCCGACATATTGGCAGGTATGGACAAAGCCATTGATGATAATGTTAATGTGCTTTCATTATCACTTGGTGGAGAGCATTTTGATTTCTACAGCGACGATGTTGCAATTGGAGCATTTGCTGCAATGGAGAAGGGTATTATGGTTTCTTGCTCTGCTGGAAATGCTGGACCCAATCAATTCAGTTTGGCTAACCAAGCACCTTGGATCACCACCGTGGGTGCCGGAACAGTTGACCGTGATTTTCCAGCATATGTAAGCCTTGGCAATGGTAAAAATTTCTCCGGTGTTTCACTTTACGCGGGTGATCCATTACCCAGTGGGATGCTTCCCTTGGTGTATGCAGGTAATGCCAGCAATGCAACCAATGGAAATCTCTGTATAATGGGAACCTTAATTCCTGAGAAAGTTAAAGGCAAAATTGTGCTGTGTGACGGAGGGGTTAACGTCAGAGCTGAAAAGGGTTATGTGGTAAAATCAGCCGGTGGAGCCGGCATGATTTTTGCTAACACAAATGGGCTGGGGCTACTGGCTGACGCCCATTTACTTCCAGCGGCGGCTGTGGGTCAATTAGATGGCGATGAAATCAAGAAGTATATAACATCAGATCCTAATCCAACGGCCACGATTCTTTTTGGAGGAACAATGGTAGGAGTCCAACCAGCACCGATTCTTGCAGCGTTCAGTTCCAGAGGCCCAAATTCCATCACGCCGGAGATACTTAAGCCGGATATCATCGCGCCAGGTGTCAATATTCTGGCCGGTTGGAGCGGTGCAGTCGGTCCTACGGGGTTGCCTGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGTGGCTTAGCGGCTTTGCTCAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCACCGCTTACACCACCTACAGGAACGGCGGAGCACTACTAGACGTAGCTACCGGAAAACCATCTACACCTTTCGGTCACGGCGCTGGGCACGTGGATCCCGTTTCAGCGGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCCTGTGTGCATTGAAATACAGTCCATCACAAATCAATATCATAGCAAGAAGAAACTTCACATGTGATTCAAGCAAAATATACAGCGTCACAGATTTGAATTACCCTTCGTTTTCAGTTGCATTCCCTGCCGATACCGGTTCAAACACAATCAGATACAGCCGGACACTGACTAATGTTGGACCGTCTGGAACATACAAAGTTGCTGTTACTTTGCCCGATAGTTCCGTGGAAATTATAGTTGAACCTGAAACAGTTAGTTTTACTCAGATTAATGAGAAGATATCGTATAGTGTGAGTTTTACTGCTCCATCAAAGCCCCCATCTACCAATGTATTCGGCAAAATTGAGTGGTCAGATGGGACGCATTTGGTCACTAGTCCAGTTGCAATTTCTTGGTCATGAATTATATGAACAAATTAAAGAGCTATATATAGCTGCTATCGATTTAATGTAAAGTTAATCAAAGAAATTTATGCTTCTTGCTCACAGTGCAGTGATGTTTCGTACCAAGTATTGTA</gDNA_template>
            <first_frame> A  F  L  V  M  L  Q  E  L  L  V  E  W  L  I  V  P  E  L  P  S  T  R  F  A  G  L  G  N  A  L  A  P  T  Y  W  Q  V  W  T  K  P  L  M  I  M  L  M  C  F  H  Y  H  L  V  E  S  I  L  I  S  T  A  T  M  L  Q  L  E  H  L  L  Q  W  R  R  V  L  W  F  L  A  L  L  E  M  L  D  P  I  N  S  V  W  L  T  K  H  L  G  S  P  P  W  V  P  E  Q  L  T  V  I  F  Q  H  M  *  A  L  A  M  V  K  I  S  P  V  F  H  F  T  R  V  I  H  Y  P  V  G  C  F  P  W  C  M  Q  V  M  P  A  M  Q  P  M  E  I  S  V  *  W  E  P  *  F  L  R  K  L  K  A  K  L  C  C  V  T  E  G  L  T  S  E  L  K  R  V  M  W  *  N  Q  P  V  E  P  A  *  F  L  L  T  Q  M  G  W  G  Y  W  L  T  P  I  Y  F  Q  R  R  L  W  V  N  *  M  A  M  K  S  R  S  I  *  H  Q  I  L  I  Q  R  P  R  F  F  L  E  E  Q  W  *  E  S  N  Q  H  R  F  L  Q  R  S  V  P  E  A  Q  I  P  S  R  R  R  Y  L  S  R  I  S  S  R  Q  V  S  I  F  W  P  V  G  A  V  Q  S  V  L  R  G  C  L  R  T  I  D  G  S  S  S  T  L  S  Q  A  H  P  C  R  V  H  T  *  V  A  *  R  L  C  S  K  E  S  T  Q  N  G  A  P  P  P  F  V  R  R  S  *  P  P  L  T  P  P  T  G  T  A  E  H  Y  *  T  *  L  P  E  N  H  L  H  L  S  V  T  A  L  G  T  W  I  P  F  Q  R  *  T  Q  V  L  F  T  T  *  T  P  M  I  T  S  I  S  C  V  H  *  N  T  V  H  H  K  S  I  S  *  Q  E  E  T  S  H  V  I  Q  A  K  Y  T  A  S  Q  I  *  I  T  L  R  F  Q  L  H  S  L  P  I  P  V  Q  T  Q  S  D  T  A  G  H  *  L  M  L  D  R  L  E  H  T  K  L  L  L  L  C  P  I  V  P  W  K  L  *  L  N  L  K  Q  L  V  L  L  R  L  M  R  R  Y  R  I  V  *  V  L  L  L  H  Q  S  P  H  L  P  M  Y  S  A  K  L  S  G  Q  M  G  R  I  W  S  L  V  Q  L  Q  F  L  G  H  E  L  Y  E  Q  I  K  E  L  Y  I  A  A  I  D  L  M  *  S  *  S  K  K  F  M  L  L  A  H  S  A  V  M  F  R  T  K  Y  C  </first_frame>
            <second_frame>  P  F  W  L  C  F  R  N  C  S  W  N  G  L  S  C  Q  S  C  R  L  Q  G  L  L  A  W  E  M  L  W  P  R  H  I  G  R  Y  G  Q  S  H  *  *  *  C  *  C  A  F  I  I  T  W  W  R  A  F  *  F  L  Q  R  R  C  C  N  W  S  I  C  C  N  G  E  G  Y  Y  G  F  L  L  C  W  K  C  W  T  Q  S  I  Q  F  G  *  P  S  T  L  D  H  H  R  G  C  R  N  S  *  P  *  F  S  S  I  C  K  P  W  Q  W  *  K  F  L  R  C  F  T  L  R  G  *  S  I  T  Q  W  D  A  S  L  G  V  C  R  *  C  Q  Q  C  N  Q  W  K  S  L  Y  N  G  N  L  N  S  *  E  S  *  R  Q  N  C  A  V  *  R  R  G  *  R  Q  S  *  K  G  L  C  G  K  I  S  R  W  S  R  H  D  F  C  *  H  K  W  A  G  A  T  G  *  R  P  F  T  S  S  G  G  C  G  S  I  R  W  R  *  N  Q  E  V  Y  N  I  R  S  *  S  N  G  H  D  S  F  W  R  N  N  G  R  S  P  T  S  T  D  S  C  S  V  Q  F  Q  R  P  K  F  H  H  A  G  D  T  *  A  G  Y  H  R  A  R  C  Q  Y  S  G  R  L  E  R  C  S  R  S  Y  G  V  A  *  G  R  *  T  G  R  V  Q  H  Y  L  R  H  I  H  V  V  S  T  R  E  W  L  S  G  F  A  Q  R  S  P  P  R  M  E  P  R  R  H  S  F  G  A  H  D  H  R  L  H  H  L  Q  E  R  R  S  T  T  R  R  S  Y  R  K  T  I  Y  T  F  R  S  R  R  W  A  R  G  S  R  F  S  G  E  P  R  S  C  L  R  H  K  R  R  *  L  P  Q  F  P  V  C  I  E  I  Q  S  I  T  N  Q  Y  H  S  K  K  K  L  H  M  *  F  K  Q  N  I  Q  R  H  R  F  E  L  P  F  V  F  S  C  I  P  C  R  Y  R  F  K  H  N  Q  I  Q  P  D  T  D  *  C  W  T  V  W  N  I  Q  S  C  C  Y  F  A  R  *  F  R  G  N  Y  S  *  T  *  N  S  *  F  Y  S  D  *  *  E  D  I  V  *  C  E  F  Y  C  S  I  K  A  P  I  Y  Q  C  I  R  Q  N  *  V  V  R  W  D  A  F  G  H  *  S  S  C  N  F  L  V  M  N  Y  M  N  K  L  K  S  Y  I  *  L  L  S  I  *  C  K  V  N  Q  R  N  L  C  F  L  L  T  V  Q  *  C  F  V  P  S  I  V </second_frame>
            <third_frame>   L  F  G  Y  A  S  G  T  A  R  G  M  A  Y  R  A  R  V  A  V  Y  K  V  C  W  L  G  K  C  F  G  P  D  I  L  A  G  M  D  K  A  I  D  D  N  V  N  V  L  S  L  S  L  G  G  E  H  F  D  F  Y  S  D  D  V  A  I  G  A  F  A  A  M  E  K  G  I  M  V  S  C  S  A  G  N  A  G  P  N  Q  F  S  L  A  N  Q  A  P  W  I  T  T  V  G  A  G  T  V  D  R  D  F  P  A  Y  V  S  L  G  N  G  K  N  F  S  G  V  S  L  Y  A  G  D  P  L  P  S  G  M  L  P  L  V  Y  A  G  N  A  S  N  A  T  N  G  N  L  C  I  M  G  T  L  I  P  E  K  V  K  G  K  I  V  L  C  D  G  G  V  N  V  R  A  E  K  G  Y  V  V  K  S  A  G  G  A  G  M  I  F  A  N  T  N  G  L  G  L  L  A  D  A  H  L  L  P  A  A  A  V  G  Q  L  D  G  D  E  I  K  K  Y  I  T  S  D  P  N  P  T  A  T  I  L  F  G  G  T  M  V  G  V  Q  P  A  P  I  L  A  A  F  S  S  R  G  P  N  S  I  T  P  E  I  L  K  P  D  I  I  A  P  G  V  N  I  L  A  G  W  S  G  A  V  G  P  T  G  L  P  E  D  D  R  R  V  E  F  N  I  I  S  G  T  S  M  S  C  P  H  V  S  G  L  A  A  L  L  K  G  V  H  P  E  W  S  P  A  A  I  R  S  A  L  M  T  T  A  Y  T  T  Y  R  N  G  G  A  L  L  D  V  A  T  G  K  P  S  T  P  F  G  H  G  A  G  H  V  D  P  V  S  A  V  N  P  G  L  V  Y  D  I  N  A  D  D  Y  L  N  F  L  C  A  L  K  Y  S  P  S  Q  I  N  I  I  A  R  R  N  F  T  C  D  S  S  K  I  Y  S  V  T  D  L  N  Y  P  S  F  S  V  A  F  P  A  D  T  G  S  N  T  I  R  Y  S  R  T  L  T  N  V  G  P  S  G  T  Y  K  V  A  V  T  L  P  D  S  S  V  E  I  I  V  E  P  E  T  V  S  F  T  Q  I  N  E  K  I  S  Y  S  V  S  F  T  A  P  S  K  P  P  S  T  N  V  F  G  K  I  E  W  S  D  G  T  H  L  V  T  S  P  V  A  I  S  W  S  *  I  I  *  T  N  *  R  A  I  Y  S  C  Y  R  F  N  V  K  L  I  K  E  I  Y  A  S  C  S  Q  C  S  D  V  S  Y  Q  V  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0203P08.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57406" stop="58992"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1584</number_coding_nucleotides>
                  <number_encoded_amino_acids>528</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFGYASGTARGMAYRARVAVYKVCWLGKCFGPDILAGMDKAIDDNVNVLSLSLGGEHFDFYSDDVAIGAFAAMEKGIMVSCSAGNAGPNQFSLANQAPWITTVGAGTVDRDFPAYVSLGNGKNFSGVSLYAGDPLPSGMLPLVYAGNASNATNGNLCIMGTLIPEKVKGKIVLCDGGVNVRAEKGYVVKSAGGAGMIFANTNGLGLLADAHLLPAAAVGQLDGDEIKKYITSDPNPTATILFGGTMVGVQPAPILAAFSSRGPNSITPEILKPDIIAPGVNILAGWSGAVGPTGLPEDDRRVEFNIISGTSMSCPHVSGLAALLKGVHPEWSPAAIRSALMTTAYTTYRNGGALLDVATGKPSTPFGHGAGHVDPVSAVNPGLVYDINADDYLNFLCALKYSPSQINIIARRNFTCDSSKIYSVTDLNYPSFSVAFPADTGSNTIRYSRTLTNVGPSGTYKVAVTLPDSSVEIIVEPETVSFTQINEKISYSVSFTAPSKPPSTNVFGKIEWSDGTHLVTSPVAISWS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="62581" PGL_stop="65176"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62581" e_stop="65098"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="62581" e_stop="65098" e_length="2518"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62581" stop="65061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62604" stop="63378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62858" stop="63553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63204" stop="63776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63519" stop="64153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63631" stop="64207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63760" stop="64269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63850" stop="64580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63919" stop="64700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63919" stop="64690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64026" stop="64847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64044" stop="64844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64117" stop="64948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64467" stop="65098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699872" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATCCACTCCCTCTTATTAATGCAGCAGTCCAAGCGAAAAATTAATCAAAAATGTCTACATACACACTACTAGTTGTTGTACTTGTGTGCCTATGTCACATGTCTGTGGCAATGGTGGAGAAGAAAACATACATCATTCACATGGCTAAATCACAAATGCCAGCAATATTTGATGATCATACTCACTGGTATGACGCGTCCCTCAAATCCGTCTCTGAATCAGCAGAGATGATCTATGTTTATAAAAACGTTGTTCATGGTTTTGCAGCAAGGCTTACAGCTCGACAAGCTGAATCCTTAGAGACCCAACCTGGGATTCTCTCTGTTTTGCCTGAGCTGATATACCAACTCCACACTACTCGGACACCTCTTTTTTTGGGACTTGATAGAAGTGTTAATATCTTTCCTGAGTCCGATGCTATGAGTGATGTCATTGTCGGAGTACTCGATACAGGGGTTTGGCCGGAGAGAAAGAGCTTTGACGATACTGGATTTGGACCTGTACCAGATTCGTGGAAAGGTGAGTGTGAGTCCAGCAACAACTTCAGTTCTGCCATGTGTAACAGAAAGCTTGTTGGAGCGAGGTATTTTTCTAGGGGTTATGAAACTACTCTTGGACCAATTGATGAGTCCAAGGAGTCTAAATCTCCTAGGGATGATGATGGACATGGAACACACACTGCTTCGACAGCAGCTGGTTCAGTTGTTCAGGGTGCTAGCCTTTTTGGTTATGCTTCAGGAACTGCTCGTGGAATGGCCTATCGTGCCAGAGTTGCCATGTACAAAGTTTGCTGGCTTGGGGGATGTTTTAACTCTGACATATTGGCAGGGATGGACAAAGCCATTGATGATAAAGTTGATGTGCTTTCATTATCACTTGGTGGAAGCACACCAGATTACTACAAAGATAGCATTGCAATTGGAGCTTTTGCTGCTATGGAGAAGGGTATTTTGGTTTCTTGCTCTGCTGGAAATGCTGGACCTAATCAATTCAGTTTGGCCAACCAAGCACCTTGGATCACCACAGTCGGTGCTGGAACAATTGACCGTGATTTTCCAGCATATGTAAGCCTTGGCAATGGTAAAAATTTCTCCGGCGTTTCACTTTACGCGGGTGATTCATTACTTAATAAAATGCTTCCCTTGGTGTATGCTGGTAATGCCAGCAATGTAACCAGTGGAAATCTCTGTATGATGGGTACCTTAATTCCTGAGAAAGTTAAAGGAAAAATTGTGCTGTGTGACAGAGGGATTAGCGCTCGAGTCCAAAAGGGTTTTGTGGTAAAAGAGGCTGGTGGAGCCGGCATGGTTTTGGCTAACACCGCAGCAAATGGGGAGGAACTAGTGGCTGACGCCCATTTACTTCCAGCGGCGGCGGTGGGTCAAAAAGCCGGTGATGTAATCAAGAAATATTTATTCTCAGATCCTAATCCAACGGCCGAAATTCTTTTTGGAGGAACAAAAGTAGACATCGAACCGTCACCGGTTGTCGCAGCGTTCAGTTCTAGAGGCCCAAATTCAATCACCCCGGAGATACTCAAACCGGATATTATCGCGCCCGGTGTAAACATTCTGGCCGGTTGGACCGGAGCCGTCGGCCCGACGGGGATGGCAGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGCGGCTTGGCGGCTTTGATAAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCTCCGCTTACACCGTCTACAAGAACGGCGGAGCACTAGTAGATGTCGCCACCGGAAAACCATCTACACCTTTCGACCACGGCGCTGGACACGTGGATCCCGTTTCGGCAGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCATGTGTGCATTGAAATACACTCCATCACAAATCAACAGCTTAGCGAGAAGAAACTTCACGTGTGATTCAAGCAAAACATACAGCGTCACAGATTTGAATTACCCTTCATTTGCTGTTTCATTCGTTGCCGGGAGTGACGGTTCAAACACAATCAAGTACAGCCGGACATTGACTAATGTTGGACCGGCTGGAACATACAAAGTTACAGTTTCTTCCCCAAATAGTTCAGTGAAAATTATAGTTGAGCCTGAAACATTGAGTTTCACTCAGATTAATGAGAAGAAATCGTATACAGTGAGTTTTACTGCTCCATCAAAGTCCTCAGCTACGGATGTATTCGGTAGAATTGAGTGGTCAGATGGGAAGCATGTGGTTAGTAGTCCAGTTGCAATTTCTTGGTCATGAATAATATGAAGACATAGCTATAGCTTCTGTTAATTTTATGTATAAGTTGATGTTTTTCTGCTTTTAAGTTTCATTCCAGCACAAAAGTTTGTAGCTGGTCTCAAGATTTTTTTATGGATAACATGAAAGAATCAAAGAAATGTATGCCTTATACAATATCTTGCTCACTGTACGGTATTTTAAGCAATTCTAATTGTGAACT</gDNA_template>
            <first_frame> H  P  L  P  L  I  N  A  A  V  Q  A  K  N  *  S  K  M  S  T  Y  T  L  L  V  V  V  L  V  C  L  C  H  M  S  V  A  M  V  E  K  K  T  Y  I  I  H  M  A  K  S  Q  M  P  A  I  F  D  D  H  T  H  W  Y  D  A  S  L  K  S  V  S  E  S  A  E  M  I  Y  V  Y  K  N  V  V  H  G  F  A  A  R  L  T  A  R  Q  A  E  S  L  E  T  Q  P  G  I  L  S  V  L  P  E  L  I  Y  Q  L  H  T  T  R  T  P  L  F  L  G  L  D  R  S  V  N  I  F  P  E  S  D  A  M  S  D  V  I  V  G  V  L  D  T  G  V  W  P  E  R  K  S  F  D  D  T  G  F  G  P  V  P  D  S  W  K  G  E  C  E  S  S  N  N  F  S  S  A  M  C  N  R  K  L  V  G  A  R  Y  F  S  R  G  Y  E  T  T  L  G  P  I  D  E  S  K  E  S  K  S  P  R  D  D  D  G  H  G  T  H  T  A  S  T  A  A  G  S  V  V  Q  G  A  S  L  F  G  Y  A  S  G  T  A  R  G  M  A  Y  R  A  R  V  A  M  Y  K  V  C  W  L  G  G  C  F  N  S  D  I  L  A  G  M  D  K  A  I  D  D  K  V  D  V  L  S  L  S  L  G  G  S  T  P  D  Y  Y  K  D  S  I  A  I  G  A  F  A  A  M  E  K  G  I  L  V  S  C  S  A  G  N  A  G  P  N  Q  F  S  L  A  N  Q  A  P  W  I  T  T  V  G  A  G  T  I  D  R  D  F  P  A  Y  V  S  L  G  N  G  K  N  F  S  G  V  S  L  Y  A  G  D  S  L  L  N  K  M  L  P  L  V  Y  A  G  N  A  S  N  V  T  S  G  N  L  C  M  M  G  T  L  I  P  E  K  V  K  G  K  I  V  L  C  D  R  G  I  S  A  R  V  Q  K  G  F  V  V  K  E  A  G  G  A  G  M  V  L  A  N  T  A  A  N  G  E  E  L  V  A  D  A  H  L  L  P  A  A  A  V  G  Q  K  A  G  D  V  I  K  K  Y  L  F  S  D  P  N  P  T  A  E  I  L  F  G  G  T  K  V  D  I  E  P  S  P  V  V  A  A  F  S  S  R  G  P  N  S  I  T  P  E  I  L  K  P  D  I  I  A  P  G  V  N  I  L  A  G  W  T  G  A  V  G  P  T  G  M  A  E  D  D  R  R  V  E  F  N  I  I  S  G  T  S  M  S  C  P  H  V  S  G  L  A  A  L  I  K  G  V  H  P  E  W  S  P  A  A  I  R  S  A  L  M  T  S  A  Y  T  V  Y  K  N  G  G  A  L  V  D  V  A  T  G  K  P  S  T  P  F  D  H  G  A  G  H  V  D  P  V  S  A  V  N  P  G  L  V  Y  D  I  N  A  D  D  Y  L  N  F  M  C  A  L  K  Y  T  P  S  Q  I  N  S  L  A  R  R  N  F  T  C  D  S  S  K  T  Y  S  V  T  D  L  N  Y  P  S  F  A  V  S  F  V  A  G  S  D  G  S  N  T  I  K  Y  S  R  T  L  T  N  V  G  P  A  G  T  Y  K  V  T  V  S  S  P  N  S  S  V  K  I  I  V  E  P  E  T  L  S  F  T  Q  I  N  E  K  K  S  Y  T  V  S  F  T  A  P  S  K  S  S  A  T  D  V  F  G  R  I  E  W  S  D  G  K  H  V  V  S  S  P  V  A  I  S  W  S  *  I  I  *  R  H  S  Y  S  F  C  *  F  Y  V  *  V  D  V  F  L  L  L  S  F  I  P  A  Q  K  F  V  A  G  L  K  I  F  L  W  I  T  *  K  N  Q  R  N  V  C  L  I  Q  Y  L  A  H  C  T  V  F  *  A  I  L  I  V  N  </first_frame>
            <second_frame>  I  H  S  L  L  L  M  Q  Q  S  K  R  K  I  N  Q  K  C  L  H  T  H  Y  *  L  L  Y  L  C  A  Y  V  T  C  L  W  Q  W  W  R  R  K  H  T  S  F  T  W  L  N  H  K  C  Q  Q  Y  L  M  I  I  L  T  G  M  T  R  P  S  N  P  S  L  N  Q  Q  R  *  S  M  F  I  K  T  L  F  M  V  L  Q  Q  G  L  Q  L  D  K  L  N  P  *  R  P  N  L  G  F  S  L  F  C  L  S  *  Y  T  N  S  T  L  L  G  H  L  F  F  W  D  L  I  E  V  L  I  S  F  L  S  P  M  L  *  V  M  S  L  S  E  Y  S  I  Q  G  F  G  R  R  E  R  A  L  T  I  L  D  L  D  L  Y  Q  I  R  G  K  V  S  V  S  P  A  T  T  S  V  L  P  C  V  T  E  S  L  L  E  R  G  I  F  L  G  V  M  K  L  L  L  D  Q  L  M  S  P  R  S  L  N  L  L  G  M  M  M  D  M  E  H  T  L  L  R  Q  Q  L  V  Q  L  F  R  V  L  A  F  L  V  M  L  Q  E  L  L  V  E  W  P  I  V  P  E  L  P  C  T  K  F  A  G  L  G  D  V  L  T  L  T  Y  W  Q  G  W  T  K  P  L  M  I  K  L  M  C  F  H  Y  H  L  V  E  A  H  Q  I  T  T  K  I  A  L  Q  L  E  L  L  L  L  W  R  R  V  F  W  F  L  A  L  L  E  M  L  D  L  I  N  S  V  W  P  T  K  H  L  G  S  P  Q  S  V  L  E  Q  L  T  V  I  F  Q  H  M  *  A  L  A  M  V  K  I  S  P  A  F  H  F  T  R  V  I  H  Y  L  I  K  C  F  P  W  C  M  L  V  M  P  A  M  *  P  V  E  I  S  V  *  W  V  P  *  F  L  R  K  L  K  E  K  L  C  C  V  T  E  G  L  A  L  E  S  K  R  V  L  W  *  K  R  L  V  E  P  A  W  F  W  L  T  P  Q  Q  M  G  R  N  *  W  L  T  P  I  Y  F  Q  R  R  R  W  V  K  K  P  V  M  *  S  R  N  I  Y  S  Q  I  L  I  Q  R  P  K  F  F  L  E  E  Q  K  *  T  S  N  R  H  R  L  S  Q  R  S  V  L  E  A  Q  I  Q  S  P  R  R  Y  S  N  R  I  L  S  R  P  V  *  T  F  W  P  V  G  P  E  P  S  A  R  R  G  W  Q  R  T  I  D  G  S  S  S  T  L  S  Q  A  H  P  C  R  V  H  T  *  A  A  W  R  L  *  *  K  E  S  T  Q  N  G  A  P  P  P  F  V  R  R  S  *  P  P  L  T  P  S  T  R  T  A  E  H  *  *  M  S  P  P  E  N  H  L  H  L  S  T  T  A  L  D  T  W  I  P  F  R  Q  *  T  Q  V  L  F  T  T  *  T  P  M  I  T  S  I  S  C  V  H  *  N  T  L  H  H  K  S  T  A  *  R  E  E  T  S  R  V  I  Q  A  K  H  T  A  S  Q  I  *  I  T  L  H  L  L  F  H  S  L  P  G  V  T  V  Q  T  Q  S  S  T  A  G  H  *  L  M  L  D  R  L  E  H  T  K  L  Q  F  L  P  Q  I  V  Q  *  K  L  *  L  S  L  K  H  *  V  S  L  R  L  M  R  R  N  R  I  Q  *  V  L  L  L  H  Q  S  P  Q  L  R  M  Y  S  V  E  L  S  G  Q  M  G  S  M  W  L  V  V  Q  L  Q  F  L  G  H  E  *  Y  E  D  I  A  I  A  S  V  N  F  M  Y  K  L  M  F  F  C  F  *  V  S  F  Q  H  K  S  L  *  L  V  S  R  F  F  Y  G  *  H  E  R  I  K  E  M  Y  A  L  Y  N  I  L  L  T  V  R  Y  F  K  Q  F  *  L  *  T </second_frame>
            <third_frame>   S  T  P  S  Y  *  C  S  S  P  S  E  K  L  I  K  N  V  Y  I  H  T  T  S  C  C  T  C  V  P  M  S  H  V  C  G  N  G  G  E  E  N  I  H  H  S  H  G  *  I  T  N  A  S  N  I  *  *  S  Y  S  L  V  *  R  V  P  Q  I  R  L  *  I  S  R  D  D  L  C  L  *  K  R  C  S  W  F  C  S  K  A  Y  S  S  T  S  *  I  L  R  D  P  T  W  D  S  L  C  F  A  *  A  D  I  P  T  P  H  Y  S  D  T  S  F  F  G  T  *  *  K  C  *  Y  L  S  *  V  R  C  Y  E  *  C  H  C  R  S  T  R  Y  R  G  L  A  G  E  K  E  L  *  R  Y  W  I  W  T  C  T  R  F  V  E  R  *  V  *  V  Q  Q  Q  L  Q  F  C  H  V  *  Q  K  A  C  W  S  E  V  F  F  *  G  L  *  N  Y  S  W  T  N  *  *  V  Q  G  V  *  I  S  *  G  *  *  W  T  W  N  T  H  C  F  D  S  S  W  F  S  C  S  G  C  *  P  F  W  L  C  F  R  N  C  S  W  N  G  L  S  C  Q  S  C  H  V  Q  S  L  L  A  W  G  M  F  *  L  *  H  I  G  R  D  G  Q  S  H  *  *  *  S  *  C  A  F  I  I  T  W  W  K  H  T  R  L  L  Q  R  *  H  C  N  W  S  F  C  C  Y  G  E  G  Y  F  G  F  L  L  C  W  K  C  W  T  *  S  I  Q  F  G  Q  P  S  T  L  D  H  H  S  R  C  W  N  N  *  P  *  F  S  S  I  C  K  P  W  Q  W  *  K  F  L  R  R  F  T  L  R  G  *  F  I  T  *  *  N  A  S  L  G  V  C  W  *  C  Q  Q  C  N  Q  W  K  S  L  Y  D  G  Y  L  N  S  *  E  S  *  R  K  N  C  A  V  *  Q  R  D  *  R  S  S  P  K  G  F  C  G  K  R  G  W  W  S  R  H  G  F  G  *  H  R  S  K  W  G  G  T  S  G  *  R  P  F  T  S  S  G  G  G  G  S  K  S  R  *  C  N  Q  E  I  F  I  L  R  S  *  S  N  G  R  N  S  F  W  R  N  K  S  R  H  R  T  V  T  G  C  R  S  V  Q  F  *  R  P  K  F  N  H  P  G  D  T  Q  T  G  Y  Y  R  A  R  C  K  H  S  G  R  L  D  R  S  R  R  P  D  G  D  G  R  G  R  *  T  G  R  V  Q  H  Y  L  R  H  I  H  V  V  S  T  R  E  R  L  G  G  F  D  K  R  S  P  P  R  M  E  P  R  R  H  S  F  G  A  H  D  L  R  L  H  R  L  Q  E  R  R  S  T  S  R  C  R  H  R  K  T  I  Y  T  F  R  P  R  R  W  T  R  G  S  R  F  G  S  E  P  R  S  C  L  R  H  K  R  R  *  L  P  Q  F  H  V  C  I  E  I  H  S  I  T  N  Q  Q  L  S  E  K  K  L  H  V  *  F  K  Q  N  I  Q  R  H  R  F  E  L  P  F  I  C  C  F  I  R  C  R  E  *  R  F  K  H  N  Q  V  Q  P  D  I  D  *  C  W  T  G  W  N  I  Q  S  Y  S  F  F  P  K  *  F  S  E  N  Y  S  *  A  *  N  I  E  F  H  S  D  *  *  E  E  I  V  Y  S  E  F  Y  C  S  I  K  V  L  S  Y  G  C  I  R  *  N  *  V  V  R  W  E  A  C  G  *  *  S  S  C  N  F  L  V  M  N  N  M  K  T  *  L  *  L  L  L  I  L  C  I  S  *  C  F  S  A  F  K  F  H  S  S  T  K  V  C  S  W  S  Q  D  F  F  M  D  N  M  K  E  S  K  K  C  M  P  Y  T  I  S  C  S  L  Y  G  I  L  S  N  S  N  C  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0203P08.2" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62626" stop="64896"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>2268</number_coding_nucleotides>
                  <number_encoded_amino_acids>756</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKMSTYTLLVVVLVCLCHMSVAMVEKKTYIIHMAKSQMPAIFDDHTHWYDASLKSVSESAEMIYVYKNVVHGFAARLTARQAESLETQPGILSVLPELIYQLHTTRTPLFLGLDRSVNIFPESDAMSDVIVGVLDTGVWPERKSFDDTGFGPVPDSWKGECESSNNFSSAMCNRKLVGARYFSRGYETTLGPIDESKESKSPRDDDGHGTHTASTAAGSVVQGASLFGYASGTARGMAYRARVAMYKVCWLGGCFNSDILAGMDKAIDDKVDVLSLSLGGSTPDYYKDSIAIGAFAAMEKGILVSCSAGNAGPNQFSLANQAPWITTVGAGTIDRDFPAYVSLGNGKNFSGVSLYAGDSLLNKMLPLVYAGNASNVTSGNLCMMGTLIPEKVKGKIVLCDRGISARVQKGFVVKEAGGAGMVLANTAANGEELVADAHLLPAAAVGQKAGDVIKKYLFSDPNPTAEILFGGTKVDIEPSPVVAAFSSRGPNSITPEILKPDIIAPGVNILAGWTGAVGPTGMAEDDRRVEFNIISGTSMSCPHVSGLAALIKGVHPEWSPAAIRSALMTSAYTVYKNGGALVDVATGKPSTPFDHGAGHVDPVSAVNPGLVYDINADDYLNFMCALKYTPSQINSLARRNFTCDSSKTYSVTDLNYPSFAVSFVAGSDGSNTIKYSRTLTNVGPAGTYKVTVSSPNSSVKIIVEPETLSFTQINEKKSYTVSFTAPSKSSATDVFGRIEWSDGKHVVSSPVAISWS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="62581" e_stop="65070"/>
            <exon e_start="65139" e_stop="65176"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.517" acc_prob="0.000" e_score="0.996"/>
          <exon-only e_score="0.842"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="62581" e_stop="65070" e_length="2490"/>
          </exon>
          <intron i_serial="1" don_prob="0.517" acc_prob="0.000">
            <gDNA_intron_boundary i_start="65071" i_stop="65138" i_length="68"/>
          </intron>
          <exon e_serial="2" e_score="0.842">
            <gDNA_exon_boundary e_start="65139" e_stop="65176" e_length="38"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62581" stop="65061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62604" stop="63378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62858" stop="63553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63204" stop="63776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63519" stop="64153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63631" stop="64207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63760" stop="64269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63850" stop="64580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63919" stop="64700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63919" stop="64690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64026" stop="64847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64044" stop="64844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64117" stop="64948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64523" stop="65070"/>
              <exon start="65139" stop="65176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427839" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATCCACTCCCTCTTATTAATGCAGCAGTCCAAGCGAAAAATTAATCAAAAATGTCTACATACACACTACTAGTTGTTGTACTTGTGTGCCTATGTCACATGTCTGTGGCAATGGTGGAGAAGAAAACATACATCATTCACATGGCTAAATCACAAATGCCAGCAATATTTGATGATCATACTCACTGGTATGACGCGTCCCTCAAATCCGTCTCTGAATCAGCAGAGATGATCTATGTTTATAAAAACGTTGTTCATGGTTTTGCAGCAAGGCTTACAGCTCGACAAGCTGAATCCTTAGAGACCCAACCTGGGATTCTCTCTGTTTTGCCTGAGCTGATATACCAACTCCACACTACTCGGACACCTCTTTTTTTGGGACTTGATAGAAGTGTTAATATCTTTCCTGAGTCCGATGCTATGAGTGATGTCATTGTCGGAGTACTCGATACAGGGGTTTGGCCGGAGAGAAAGAGCTTTGACGATACTGGATTTGGACCTGTACCAGATTCGTGGAAAGGTGAGTGTGAGTCCAGCAACAACTTCAGTTCTGCCATGTGTAACAGAAAGCTTGTTGGAGCGAGGTATTTTTCTAGGGGTTATGAAACTACTCTTGGACCAATTGATGAGTCCAAGGAGTCTAAATCTCCTAGGGATGATGATGGACATGGAACACACACTGCTTCGACAGCAGCTGGTTCAGTTGTTCAGGGTGCTAGCCTTTTTGGTTATGCTTCAGGAACTGCTCGTGGAATGGCCTATCGTGCCAGAGTTGCCATGTACAAAGTTTGCTGGCTTGGGGGATGTTTTAACTCTGACATATTGGCAGGGATGGACAAAGCCATTGATGATAAAGTTGATGTGCTTTCATTATCACTTGGTGGAAGCACACCAGATTACTACAAAGATAGCATTGCAATTGGAGCTTTTGCTGCTATGGAGAAGGGTATTTTGGTTTCTTGCTCTGCTGGAAATGCTGGACCTAATCAATTCAGTTTGGCCAACCAAGCACCTTGGATCACCACAGTCGGTGCTGGAACAATTGACCGTGATTTTCCAGCATATGTAAGCCTTGGCAATGGTAAAAATTTCTCCGGCGTTTCACTTTACGCGGGTGATTCATTACTTAATAAAATGCTTCCCTTGGTGTATGCTGGTAATGCCAGCAATGTAACCAGTGGAAATCTCTGTATGATGGGTACCTTAATTCCTGAGAAAGTTAAAGGAAAAATTGTGCTGTGTGACAGAGGGATTAGCGCTCGAGTCCAAAAGGGTTTTGTGGTAAAAGAGGCTGGTGGAGCCGGCATGGTTTTGGCTAACACCGCAGCAAATGGGGAGGAACTAGTGGCTGACGCCCATTTACTTCCAGCGGCGGCGGTGGGTCAAAAAGCCGGTGATGTAATCAAGAAATATTTATTCTCAGATCCTAATCCAACGGCCGAAATTCTTTTTGGAGGAACAAAAGTAGACATCGAACCGTCACCGGTTGTCGCAGCGTTCAGTTCTAGAGGCCCAAATTCAATCACCCCGGAGATACTCAAACCGGATATTATCGCGCCCGGTGTAAACATTCTGGCCGGTTGGACCGGAGCCGTCGGCCCGACGGGGATGGCAGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGCGGCTTGGCGGCTTTGATAAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCTCCGCTTACACCGTCTACAAGAACGGCGGAGCACTAGTAGATGTCGCCACCGGAAAACCATCTACACCTTTCGACCACGGCGCTGGACACGTGGATCCCGTTTCGGCAGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCATGTGTGCATTGAAATACACTCCATCACAAATCAACAGCTTAGCGAGAAGAAACTTCACGTGTGATTCAAGCAAAACATACAGCGTCACAGATTTGAATTACCCTTCATTTGCTGTTTCATTCGTTGCCGGGAGTGACGGTTCAAACACAATCAAGTACAGCCGGACATTGACTAATGTTGGACCGGCTGGAACATACAAAGTTACAGTTTCTTCCCCAAATAGTTCAGTGAAAATTATAGTTGAGCCTGAAACATTGAGTTTCACTCAGATTAATGAGAAGAAATCGTATACAGTGAGTTTTACTGCTCCATCAAAGTCCTCAGCTACGGATGTATTCGGTAGAATTGAGTGGTCAGATGGGAAGCATGTGGTTAGTAGTCCAGTTGCAATTTCTTGGTCATGAATAATATGAAGACATAGCTATAGCTTCTGTTAATTTTATGTATAAGTTGATGTTTTTCTGCTTTTAAGTTTCATTCCAGCACAAAAGTTTGTAGCTGGTCTCAAGATTTTTTTATGGATAACATGAAAGAATCAAAGAAATGTATGCCTTATACAATATCTTGCTCACTGTACG : TGTATCTCGTATACCAAGTATCGTAAGCAATTCTAATT</gDNA_template>
            <first_frame> H  P  L  P  L  I  N  A  A  V  Q  A  K  N  *  S  K  M  S  T  Y  T  L  L  V  V  V  L  V  C  L  C  H  M  S  V  A  M  V  E  K  K  T  Y  I  I  H  M  A  K  S  Q  M  P  A  I  F  D  D  H  T  H  W  Y  D  A  S  L  K  S  V  S  E  S  A  E  M  I  Y  V  Y  K  N  V  V  H  G  F  A  A  R  L  T  A  R  Q  A  E  S  L  E  T  Q  P  G  I  L  S  V  L  P  E  L  I  Y  Q  L  H  T  T  R  T  P  L  F  L  G  L  D  R  S  V  N  I  F  P  E  S  D  A  M  S  D  V  I  V  G  V  L  D  T  G  V  W  P  E  R  K  S  F  D  D  T  G  F  G  P  V  P  D  S  W  K  G  E  C  E  S  S  N  N  F  S  S  A  M  C  N  R  K  L  V  G  A  R  Y  F  S  R  G  Y  E  T  T  L  G  P  I  D  E  S  K  E  S  K  S  P  R  D  D  D  G  H  G  T  H  T  A  S  T  A  A  G  S  V  V  Q  G  A  S  L  F  G  Y  A  S  G  T  A  R  G  M  A  Y  R  A  R  V  A  M  Y  K  V  C  W  L  G  G  C  F  N  S  D  I  L  A  G  M  D  K  A  I  D  D  K  V  D  V  L  S  L  S  L  G  G  S  T  P  D  Y  Y  K  D  S  I  A  I  G  A  F  A  A  M  E  K  G  I  L  V  S  C  S  A  G  N  A  G  P  N  Q  F  S  L  A  N  Q  A  P  W  I  T  T  V  G  A  G  T  I  D  R  D  F  P  A  Y  V  S  L  G  N  G  K  N  F  S  G  V  S  L  Y  A  G  D  S  L  L  N  K  M  L  P  L  V  Y  A  G  N  A  S  N  V  T  S  G  N  L  C  M  M  G  T  L  I  P  E  K  V  K  G  K  I  V  L  C  D  R  G  I  S  A  R  V  Q  K  G  F  V  V  K  E  A  G  G  A  G  M  V  L  A  N  T  A  A  N  G  E  E  L  V  A  D  A  H  L  L  P  A  A  A  V  G  Q  K  A  G  D  V  I  K  K  Y  L  F  S  D  P  N  P  T  A  E  I  L  F  G  G  T  K  V  D  I  E  P  S  P  V  V  A  A  F  S  S  R  G  P  N  S  I  T  P  E  I  L  K  P  D  I  I  A  P  G  V  N  I  L  A  G  W  T  G  A  V  G  P  T  G  M  A  E  D  D  R  R  V  E  F  N  I  I  S  G  T  S  M  S  C  P  H  V  S  G  L  A  A  L  I  K  G  V  H  P  E  W  S  P  A  A  I  R  S  A  L  M  T  S  A  Y  T  V  Y  K  N  G  G  A  L  V  D  V  A  T  G  K  P  S  T  P  F  D  H  G  A  G  H  V  D  P  V  S  A  V  N  P  G  L  V  Y  D  I  N  A  D  D  Y  L  N  F  M  C  A  L  K  Y  T  P  S  Q  I  N  S  L  A  R  R  N  F  T  C  D  S  S  K  T  Y  S  V  T  D  L  N  Y  P  S  F  A  V  S  F  V  A  G  S  D  G  S  N  T  I  K  Y  S  R  T  L  T  N  V  G  P  A  G  T  Y  K  V  T  V  S  S  P  N  S  S  V  K  I  I  V  E  P  E  T  L  S  F  T  Q  I  N  E  K  K  S  Y  T  V  S  F  T  A  P  S  K  S  S  A  T  D  V  F  G  R  I  E  W  S  D  G  K  H  V  V  S  S  P  V  A  I  S  W  S  *  I  I  *  R  H  S  Y  S  F  C  *  F  Y  V  *  V  D  V  F  L  L  L  S  F  I  P  A  Q  K  F  V  A  G  L  K  I  F  L  W  I  T  *  K  N  Q  R  N  V  C  L  I  Q  Y  L  A  H  C  T  :  C  I  S  Y  T  K  Y  R  K  Q  F  *   </first_frame>
            <second_frame>  I  H  S  L  L  L  M  Q  Q  S  K  R  K  I  N  Q  K  C  L  H  T  H  Y  *  L  L  Y  L  C  A  Y  V  T  C  L  W  Q  W  W  R  R  K  H  T  S  F  T  W  L  N  H  K  C  Q  Q  Y  L  M  I  I  L  T  G  M  T  R  P  S  N  P  S  L  N  Q  Q  R  *  S  M  F  I  K  T  L  F  M  V  L  Q  Q  G  L  Q  L  D  K  L  N  P  *  R  P  N  L  G  F  S  L  F  C  L  S  *  Y  T  N  S  T  L  L  G  H  L  F  F  W  D  L  I  E  V  L  I  S  F  L  S  P  M  L  *  V  M  S  L  S  E  Y  S  I  Q  G  F  G  R  R  E  R  A  L  T  I  L  D  L  D  L  Y  Q  I  R  G  K  V  S  V  S  P  A  T  T  S  V  L  P  C  V  T  E  S  L  L  E  R  G  I  F  L  G  V  M  K  L  L  L  D  Q  L  M  S  P  R  S  L  N  L  L  G  M  M  M  D  M  E  H  T  L  L  R  Q  Q  L  V  Q  L  F  R  V  L  A  F  L  V  M  L  Q  E  L  L  V  E  W  P  I  V  P  E  L  P  C  T  K  F  A  G  L  G  D  V  L  T  L  T  Y  W  Q  G  W  T  K  P  L  M  I  K  L  M  C  F  H  Y  H  L  V  E  A  H  Q  I  T  T  K  I  A  L  Q  L  E  L  L  L  L  W  R  R  V  F  W  F  L  A  L  L  E  M  L  D  L  I  N  S  V  W  P  T  K  H  L  G  S  P  Q  S  V  L  E  Q  L  T  V  I  F  Q  H  M  *  A  L  A  M  V  K  I  S  P  A  F  H  F  T  R  V  I  H  Y  L  I  K  C  F  P  W  C  M  L  V  M  P  A  M  *  P  V  E  I  S  V  *  W  V  P  *  F  L  R  K  L  K  E  K  L  C  C  V  T  E  G  L  A  L  E  S  K  R  V  L  W  *  K  R  L  V  E  P  A  W  F  W  L  T  P  Q  Q  M  G  R  N  *  W  L  T  P  I  Y  F  Q  R  R  R  W  V  K  K  P  V  M  *  S  R  N  I  Y  S  Q  I  L  I  Q  R  P  K  F  F  L  E  E  Q  K  *  T  S  N  R  H  R  L  S  Q  R  S  V  L  E  A  Q  I  Q  S  P  R  R  Y  S  N  R  I  L  S  R  P  V  *  T  F  W  P  V  G  P  E  P  S  A  R  R  G  W  Q  R  T  I  D  G  S  S  S  T  L  S  Q  A  H  P  C  R  V  H  T  *  A  A  W  R  L  *  *  K  E  S  T  Q  N  G  A  P  P  P  F  V  R  R  S  *  P  P  L  T  P  S  T  R  T  A  E  H  *  *  M  S  P  P  E  N  H  L  H  L  S  T  T  A  L  D  T  W  I  P  F  R  Q  *  T  Q  V  L  F  T  T  *  T  P  M  I  T  S  I  S  C  V  H  *  N  T  L  H  H  K  S  T  A  *  R  E  E  T  S  R  V  I  Q  A  K  H  T  A  S  Q  I  *  I  T  L  H  L  L  F  H  S  L  P  G  V  T  V  Q  T  Q  S  S  T  A  G  H  *  L  M  L  D  R  L  E  H  T  K  L  Q  F  L  P  Q  I  V  Q  *  K  L  *  L  S  L  K  H  *  V  S  L  R  L  M  R  R  N  R  I  Q  *  V  L  L  L  H  Q  S  P  Q  L  R  M  Y  S  V  E  L  S  G  Q  M  G  S  M  W  L  V  V  Q  L  Q  F  L  G  H  E  *  Y  E  D  I  A  I  A  S  V  N  F  M  Y  K  L  M  F  F  C  F  *  V  S  F  Q  H  K  S  L  *  L  V  S  R  F  F  Y  G  *  H  E  R  I  K  E  M  Y  A  L  Y  N  I  L  L  T  V  R :   V  S  R  I  P  S  I  V  S  N  S  N  </second_frame>
            <third_frame>   S  T  P  S  Y  *  C  S  S  P  S  E  K  L  I  K  N  V  Y  I  H  T  T  S  C  C  T  C  V  P  M  S  H  V  C  G  N  G  G  E  E  N  I  H  H  S  H  G  *  I  T  N  A  S  N  I  *  *  S  Y  S  L  V  *  R  V  P  Q  I  R  L  *  I  S  R  D  D  L  C  L  *  K  R  C  S  W  F  C  S  K  A  Y  S  S  T  S  *  I  L  R  D  P  T  W  D  S  L  C  F  A  *  A  D  I  P  T  P  H  Y  S  D  T  S  F  F  G  T  *  *  K  C  *  Y  L  S  *  V  R  C  Y  E  *  C  H  C  R  S  T  R  Y  R  G  L  A  G  E  K  E  L  *  R  Y  W  I  W  T  C  T  R  F  V  E  R  *  V  *  V  Q  Q  Q  L  Q  F  C  H  V  *  Q  K  A  C  W  S  E  V  F  F  *  G  L  *  N  Y  S  W  T  N  *  *  V  Q  G  V  *  I  S  *  G  *  *  W  T  W  N  T  H  C  F  D  S  S  W  F  S  C  S  G  C  *  P  F  W  L  C  F  R  N  C  S  W  N  G  L  S  C  Q  S  C  H  V  Q  S  L  L  A  W  G  M  F  *  L  *  H  I  G  R  D  G  Q  S  H  *  *  *  S  *  C  A  F  I  I  T  W  W  K  H  T  R  L  L  Q  R  *  H  C  N  W  S  F  C  C  Y  G  E  G  Y  F  G  F  L  L  C  W  K  C  W  T  *  S  I  Q  F  G  Q  P  S  T  L  D  H  H  S  R  C  W  N  N  *  P  *  F  S  S  I  C  K  P  W  Q  W  *  K  F  L  R  R  F  T  L  R  G  *  F  I  T  *  *  N  A  S  L  G  V  C  W  *  C  Q  Q  C  N  Q  W  K  S  L  Y  D  G  Y  L  N  S  *  E  S  *  R  K  N  C  A  V  *  Q  R  D  *  R  S  S  P  K  G  F  C  G  K  R  G  W  W  S  R  H  G  F  G  *  H  R  S  K  W  G  G  T  S  G  *  R  P  F  T  S  S  G  G  G  G  S  K  S  R  *  C  N  Q  E  I  F  I  L  R  S  *  S  N  G  R  N  S  F  W  R  N  K  S  R  H  R  T  V  T  G  C  R  S  V  Q  F  *  R  P  K  F  N  H  P  G  D  T  Q  T  G  Y  Y  R  A  R  C  K  H  S  G  R  L  D  R  S  R  R  P  D  G  D  G  R  G  R  *  T  G  R  V  Q  H  Y  L  R  H  I  H  V  V  S  T  R  E  R  L  G  G  F  D  K  R  S  P  P  R  M  E  P  R  R  H  S  F  G  A  H  D  L  R  L  H  R  L  Q  E  R  R  S  T  S  R  C  R  H  R  K  T  I  Y  T  F  R  P  R  R  W  T  R  G  S  R  F  G  S  E  P  R  S  C  L  R  H  K  R  R  *  L  P  Q  F  H  V  C  I  E  I  H  S  I  T  N  Q  Q  L  S  E  K  K  L  H  V  *  F  K  Q  N  I  Q  R  H  R  F  E  L  P  F  I  C  C  F  I  R  C  R  E  *  R  F  K  H  N  Q  V  Q  P  D  I  D  *  C  W  T  G  W  N  I  Q  S  Y  S  F  F  P  K  *  F  S  E  N  Y  S  *  A  *  N  I  E  F  H  S  D  *  *  E  E  I  V  Y  S  E  F  Y  C  S  I  K  V  L  S  Y  G  C  I  R  *  N  *  V  V  R  W  E  A  C  G  *  *  S  S  C  N  F  L  V  M  N  N  M  K  T  *  L  *  L  L  L  I  L  C  I  S  *  C  F  S  A  F  K  F  H  S  S  T  K  V  C  S  W  S  Q  D  F  F  M  D  N  M  K  E  S  K  K  C  M  P  Y  T  I  S  C  S  L  Y   : V  Y  L  V  Y  Q  V  S  *  A  I  L  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0203P08.2" strand="+"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62626" stop="64896"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>2268</number_coding_nucleotides>
                  <number_encoded_amino_acids>756</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKMSTYTLLVVVLVCLCHMSVAMVEKKTYIIHMAKSQMPAIFDDHTHWYDASLKSVSESAEMIYVYKNVVHGFAARLTARQAESLETQPGILSVLPELIYQLHTTRTPLFLGLDRSVNIFPESDAMSDVIVGVLDTGVWPERKSFDDTGFGPVPDSWKGECESSNNFSSAMCNRKLVGARYFSRGYETTLGPIDESKESKSPRDDDGHGTHTASTAAGSVVQGASLFGYASGTARGMAYRARVAMYKVCWLGGCFNSDILAGMDKAIDDKVDVLSLSLGGSTPDYYKDSIAIGAFAAMEKGILVSCSAGNAGPNQFSLANQAPWITTVGAGTIDRDFPAYVSLGNGKNFSGVSLYAGDSLLNKMLPLVYAGNASNVTSGNLCMMGTLIPEKVKGKIVLCDRGISARVQKGFVVKEAGGAGMVLANTAANGEELVADAHLLPAAAVGQKAGDVIKKYLFSDPNPTAEILFGGTKVDIEPSPVVAAFSSRGPNSITPEILKPDIIAPGVNILAGWTGAVGPTGMAEDDRRVEFNIISGTSMSCPHVSGLAALIKGVHPEWSPAAIRSALMTSAYTVYKNGGALVDVATGKPSTPFDHGAGHVDPVSAVNPGLVYDINADDYLNFMCALKYTPSQINSLARRNFTCDSSKTYSVTDLNYPSFAVSFVAGSDGSNTIKYSRTLTNVGPAGTYKVTVSSPNSSVKIIVEPETLSFTQINEKKSYTVSFTAPSKSSATDVFGRIEWSDGKHVVSSPVAISWS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="67651" PGL_stop="67995"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67651" e_stop="67995"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="67651" e_stop="67995" e_length="345"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67651" stop="67995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353937" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCATTCTTTACGTAATCTTTCTTCAAATTATAATATCTGCAATCCAACCAAATAATTAAAGGAAAAATCACCATGATATAGAGATCATGTCTGCCGGTTTAAAGAAAACATGATAAGAAAGAAGAGAAATTTCTCTTACTCTTTGGTGATCTCTGAATATGAAACAAGACTTTCCGTGGACCATCACAATTCTGAAGAGCTGTTAAAATCATGCAAACTAAGCCACCATGTATTCTGTTACTCCTCTGGTATAACACTTCTCCACAATACTTACTAGAAGCAAAGTATTAATTTAGCCTTTTCAGGGCATCAATCTGCAAAGTGTCTCGAAAGCAAAATTGAACT</gDNA_template>
            <first_frame> S  F  F  T  *  S  F  F  K  L  *  Y  L  Q  S  N  Q  I  I  K  G  K  I  T  M  I  *  R  S  C  L  P  V  *  R  K  H  D  K  K  E  E  K  F  L  L  L  F  G  D  L  *  I  *  N  K  T  F  R  G  P  S  Q  F  *  R  A  V  K  I  M  Q  T  K  P  P  C  I  L  L  L  L  W  Y  N  T  S  P  Q  Y  L  L  E  A  K  Y  *  F  S  L  F  R  A  S  I  C  K  V  S  R  K  Q  N  *  T </first_frame>
            <second_frame>  H  S  L  R  N  L  S  S  N  Y  N  I  C  N  P  T  K  *  L  K  E  K  S  P  *  Y  R  D  H  V  C  R  F  K  E  N  M  I  R  K  K  R  N  F  S  Y  S  L  V  I  S  E  Y  E  T  R  L  S  V  D  H  H  N  S  E  E  L  L  K  S  C  K  L  S  H  H  V  F  C  Y  S  S  G  I  T  L  L  H  N  T  Y  *  K  Q  S  I  N  L  A  F  S  G  H  Q  S  A  K  C  L  E  S  K  I  E   </second_frame>
            <third_frame>   I  L  Y  V  I  F  L  Q  I  I  I  S  A  I  Q  P  N  N  *  R  K  N  H  H  D  I  E  I  M  S  A  G  L  K  K  T  *  *  E  R  R  E  I  S  L  T  L  W  *  S  L  N  M  K  Q  D  F  P  W  T  I  T  I  L  K  S  C  *  N  H  A  N  *  A  T  M  Y  S  V  T  P  L  V  *  H  F  S  T  I  L  T  R  S  K  V  L  I  *  P  F  Q  G  I  N  L  Q  S  V  S  K  A  K  L  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0203P08.2" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67727" stop="67927"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YRDHVCRFKENMIRKKRNFSYSLVISEYETRLSVDHHNSEELLKSCKLSHHVFCYSSGITLLHNTY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="73326" PGL_stop="68972"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73326" e_stop="73292"/>
            <exon e_start="72457" e_stop="72313"/>
            <exon e_start="71846" e_stop="71678"/>
            <exon e_start="71130" e_stop="70872"/>
            <exon e_start="69991" e_stop="69903"/>
            <exon e_start="69274" e_stop="69092"/>
            <exon e_start="69012" e_stop="68972"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.869" e_score="0.966"/>
          <exon-intron don_prob="0.996" acc_prob="0.982" e_score="0.982"/>
          <exon-intron don_prob="0.911" acc_prob="0.990" e_score="0.973"/>
          <exon-intron don_prob="0.000" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.982" e_score="0.934"/>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73326" e_stop="73292" e_length="35"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.988">
            <gDNA_intron_boundary i_start="73291" i_stop="72458" i_length="834"/>
          </intron>
          <exon e_serial="2" e_score="0.966">
            <gDNA_exon_boundary e_start="72457" e_stop="72313" e_length="145"/>
          </exon>
          <intron i_serial="2" don_prob="0.955" acc_prob="0.869">
            <gDNA_intron_boundary i_start="72312" i_stop="71847" i_length="466"/>
          </intron>
          <exon e_serial="3" e_score="0.982">
            <gDNA_exon_boundary e_start="71846" e_stop="71678" e_length="169"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.982">
            <gDNA_intron_boundary i_start="71677" i_stop="71131" i_length="547"/>
          </intron>
          <exon e_serial="4" e_score="0.973">
            <gDNA_exon_boundary e_start="71130" e_stop="70872" e_length="259"/>
          </exon>
          <intron i_serial="4" don_prob="0.911" acc_prob="0.990">
            <gDNA_intron_boundary i_start="70871" i_stop="69992" i_length="880"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="69991" e_stop="69903" e_length="89"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="69902" i_stop="69275" i_length="628"/>
          </intron>
          <exon e_serial="6" e_score="0.934">
            <gDNA_exon_boundary e_start="69274" e_stop="69092" e_length="183"/>
          </exon>
          <intron i_serial="6" don_prob="0.987" acc_prob="0.982">
            <gDNA_intron_boundary i_start="69091" i_stop="69013" i_length="79"/>
          </intron>
          <exon e_serial="7" e_score="0.976">
            <gDNA_exon_boundary e_start="69012" e_stop="68972" e_length="41"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73326" stop="73292"/>
              <exon start="72457" stop="72313"/>
              <exon start="71846" stop="71678"/>
              <exon start="71130" stop="70872"/>
              <exon start="69991" stop="69903"/>
              <exon start="69274" stop="69197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72371" stop="72313"/>
              <exon start="71846" stop="71678"/>
              <exon start="71130" stop="70872"/>
              <exon start="69991" stop="69903"/>
              <exon start="69274" stop="69092"/>
              <exon start="69012" stop="68972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700950" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGAAGTTTCCTTTTACTCTATTCGCTTTCTTCAG : TAATGGAAGGCTTGTTGGCAGTATTTGGAGAGTACGACTTAGCATTCCATGGCATTAGTAGGGAGCAGATGGTCATCTCTCTATGTGTTGGATACGCAACTGCTCTCTTTGTCGGTACCTTTTTGGGAATGCTCTCGGATTTGAT : TGGCCAGAGAAAAGTCAGCTTGTTATTTTGCTTGCTGCATCTTTTTGTTGCCGTATGGAGGAGGGTTACTGGACATCCAACTATTTGGCTCGCTAGCATCTGTCTGTCTCTTACCTCTACAATATTTTTCTTCAACTTCGAGACATGGATGGTTGTTGAGCATGATAAG : CTTGAGCAGAGGCAGGATTCAGTGAATGACATGTTTTGGTTAATGACTTTTGTTGAATCTGCATCTTTCATTGGAAGCCAAGTGGTTGGTAACTGGTTAATTGGTGGTCATGAAAAGACAACTTTGCTTGCTCCGTCCAGTGCAGTGGTAATAATGGCTCTTAGTGCTCTGGCTTATGTCAGCCGAGGATGGAAGGAAGATCCAAAATCAATTATTCTTAAAGAATATCAGACTAAATTTCATACATACATAATCAGTG : ATAAAAGGGTTTGGCTTTTGTCATGGACCCAAGCTACCATGCACTTCTCAATTGCAGTTTTTTGGATTACTTGGGCTCCAACCATTGTG : GCAGATGGGAGAGGGGTTTTGCTAGGTTTAGTATACCCCTGTGTACTTGGTGCGAAAATGCTTGGAAGCACTGCATTTTCCTGGTTCTCTAGTGGCCCTTTATCACTCCGAACAGAGGAGTGCTTAGTATATGCCTGTATTATTATGGGCTTTGTCACTTCCATTGTAGCTTTTGATTATCAG : GATGTTGAAATTCTTTTGATGCTATTCTGCATATTTCATGC</gDNA_template>
            <first_frame> E  K  F  P  F  T  L  F  A  F  F  S :   N  G  R  L  V  G  S  I  W  R  V  R  L  S  I  P  W  H  *  *  G  A  D  G  H  L  S  M  C  W  I  R  N  C  S  L  C  R  Y  L  F  G  N  A  L  G  F  D  :  W  P  E  K  S  Q  L  V  I  L  L  A  A  S  F  C  C  R  M  E  E  G  Y  W  T  S  N  Y  L  A  R  *  H  L  S  V  S  Y  L  Y  N  I  F  L  Q  L  R  D  M  D  G  C  *  A  *  *   : A  *  A  E  A  G  F  S  E  *  H  V  L  V  N  D  F  C  *  I  C  I  F  H  W  K  P  S  G  W  *  L  V  N  W  W  S  *  K  D  N  F  A  C  S  V  Q  C  S  G  N  N  G  S  *  C  S  G  L  C  Q  P  R  M  E  G  R  S  K  I  N  Y  S  *  R  I  S  D  *  I  S  Y  I  H  N  Q  * :   *  K  G  L  A  F  V  M  D  P  S  Y  H  A  L  L  N  C  S  F  L  D  Y  L  G  S  N  H  C   : G  R  W  E  R  G  F  A  R  F  S  I  P  L  C  T  W  C  E  N  A  W  K  H  C  I  F  L  V  L  *  W  P  F  I  T  P  N  R  G  V  L  S  I  C  L  Y  Y  Y  G  L  C  H  F  H  C  S  F  *  L  S   : G  C  *  N  S  F  D  A  I  L  H  I  S  C </first_frame>
            <second_frame>  R  S  F  L  L  L  Y  S  L  S  S   : V  M  E  G  L  L  A  V  F  G  E  Y  D  L  A  F  H  G  I  S  R  E  Q  M  V  I  S  L  C  V  G  Y  A  T  A  L  F  V  G  T  F  L  G  M  L  S  D  L  I :   G  Q  R  K  V  S  L  L  F  C  L  L  H  L  F  V  A  V  W  R  R  V  T  G  H  P  T  I  W  L  A  S  I  C  L  S  L  T  S  T  I  F  F  F  N  F  E  T  W  M  V  V  E  H  D  K  :  L  E  Q  R  Q  D  S  V  N  D  M  F  W  L  M  T  F  V  E  S  A  S  F  I  G  S  Q  V  V  G  N  W  L  I  G  G  H  E  K  T  T  L  L  A  P  S  S  A  V  V  I  M  A  L  S  A  L  A  Y  V  S  R  G  W  K  E  D  P  K  S  I  I  L  K  E  Y  Q  T  K  F  H  T  Y  I  I  S   : D  K  R  V  W  L  L  S  W  T  Q  A  T  M  H  F  S  I  A  V  F  W  I  T  W  A  P  T  I  V  :  A  D  G  R  G  V  L  L  G  L  V  Y  P  C  V  L  G  A  K  M  L  G  S  T  A  F  S  W  F  S  S  G  P  L  S  L  R  T  E  E  C  L  V  Y  A  C  I  I  M  G  F  V  T  S  I  V  A  F  D  Y  Q  :  D  V  E  I  L  L  M  L  F  C  I  F  H   </second_frame>
            <third_frame>   E  V  S  F  Y  S  I  R  F  L  Q  :  *  W  K  A  C  W  Q  Y  L  E  S  T  T  *  H  S  M  A  L  V  G  S  R  W  S  S  L  Y  V  L  D  T  Q  L  L  S  L  S  V  P  F  W  E  C  S  R  I  *   : L  A  R  E  K  S  A  C  Y  F  A  C  C  I  F  L  L  P  Y  G  G  G  L  L  D  I  Q  L  F  G  S  L  A  S  V  C  L  L  P  L  Q  Y  F  S  S  T  S  R  H  G  W  L  L  S  M  I  S :   L  S  R  G  R  I  Q  *  M  T  C  F  G  *  *  L  L  L  N  L  H  L  S  L  E  A  K  W  L  V  T  G  *  L  V  V  M  K  R  Q  L  C  L  L  R  P  V  Q  W  *  *  W  L  L  V  L  W  L  M  S  A  E  D  G  R  K  I  Q  N  Q  L  F  L  K  N  I  R  L  N  F  I  H  T  *  S  V  :  I  K  G  F  G  F  C  H  G  P  K  L  P  C  T  S  Q  L  Q  F  F  G  L  L  G  L  Q  P  L  W :   Q  M  G  E  G  F  C  *  V  *  Y  T  P  V  Y  L  V  R  K  C  L  E  A  L  H  F  P  G  S  L  V  A  L  Y  H  S  E  Q  R  S  A  *  Y  M  P  V  L  L  W  A  L  S  L  P  L  *  L  L  I  I  R :   M  L  K  F  F  *  C  Y  S  A  Y  F  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0203P08.2" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73325" stop="73292"/>
                    <exon start="72457" stop="72313"/>
                    <exon start="71846" stop="71678"/>
                    <exon start="71130" stop="70872"/>
                    <exon start="69991" stop="69903"/>
                    <exon start="69274" stop="69092"/>
                    <exon start="69012" stop="68974"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>918</number_coding_nucleotides>
                  <number_encoded_amino_acids>306</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSFLLLYSLSSVMEGLLAVFGEYDLAFHGISREQMVISLCVGYATALFVGTFLGMLSDLIGQRKVSLLFCLLHLFVAVWRRVTGHPTIWLASICLSLTSTIFFFNFETWMVVEHDKLEQRQDSVNDMFWLMTFVESASFIGSQVVGNWLIGGHEKTTLLAPSSAVVIMALSALAYVSRGWKEDPKSIILKEYQTKFHTYIISDKRVWLLSWTQATMHFSIAVFWITWAPTIVADGRGVLLGLVYPCVLGAKMLGSTAFSWFSSGPLSLRTEECLVYACIIMGFVTSIVAFDYQDVEILLMLFCIFH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="73326" e_stop="73292"/>
            <exon e_start="72457" e_stop="72313"/>
            <exon e_start="71846" e_stop="71678"/>
            <exon e_start="71130" e_stop="70872"/>
            <exon e_start="69991" e_stop="69883"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.869" e_score="0.966"/>
          <exon-intron don_prob="0.996" acc_prob="0.982" e_score="0.959"/>
          <exon-intron don_prob="0.911" acc_prob="0.990" e_score="0.973"/>
          <exon-only e_score="0.936"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73326" e_stop="73292" e_length="35"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.988">
            <gDNA_intron_boundary i_start="73291" i_stop="72458" i_length="834"/>
          </intron>
          <exon e_serial="2" e_score="0.966">
            <gDNA_exon_boundary e_start="72457" e_stop="72313" e_length="145"/>
          </exon>
          <intron i_serial="2" don_prob="0.955" acc_prob="0.869">
            <gDNA_intron_boundary i_start="72312" i_stop="71847" i_length="466"/>
          </intron>
          <exon e_serial="3" e_score="0.959">
            <gDNA_exon_boundary e_start="71846" e_stop="71678" e_length="169"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.982">
            <gDNA_intron_boundary i_start="71677" i_stop="71131" i_length="547"/>
          </intron>
          <exon e_serial="4" e_score="0.973">
            <gDNA_exon_boundary e_start="71130" e_stop="70872" e_length="259"/>
          </exon>
          <intron i_serial="4" don_prob="0.911" acc_prob="0.990">
            <gDNA_intron_boundary i_start="70871" i_stop="69992" i_length="880"/>
          </intron>
          <exon e_serial="5" e_score="0.936">
            <gDNA_exon_boundary e_start="69991" e_stop="69883" e_length="109"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73326" stop="73292"/>
              <exon start="72457" stop="72313"/>
              <exon start="71846" stop="71678"/>
              <exon start="71130" stop="70872"/>
              <exon start="69991" stop="69902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71808" stop="71678"/>
              <exon start="71130" stop="70872"/>
              <exon start="69991" stop="69883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557949" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGAAGTTTCCTTTTACTCTATTCGCTTTCTTCAG : TAATGGAAGGCTTGTTGGCAGTATTTGGAGAGTACGACTTAGCATTCCATGGCATTAGTAGGGAGCAGATGGTCATCTCTCTATGTGTTGGATACGCAACTGCTCTCTTTGTCGGTACCTTTTTGGGAATGCTCTCGGATTTGAT : TGGCCAGAGAAAAGTCAGCTTGTTATTTTGCTTGCTGCATCTTTTTGTTGCCGTATGGAGGAGGGTTACTGGACATCCAACTATTTGGCTCGCTAGCATCTGTCTGTCTCTTACCTCTACAATATTTTTCTTCAACTTCGAGACATGGATGGTTGTTGAGCATGATAAG : CTTGAGCAGAGGCAGGATTCAGTGAATGACATGTTTTGGTTAATGACTTTTGTTGAATCTGCATCTTTCATTGGAAGCCAAGTGGTTGGTAACTGGTTAATTGGTGGTCATGAAAAGACAACTTTGCTTGCTCCGTCCAGTGCAGTGGTAATAATGGCTCTTAGTGCTCTGGCTTATGTCAGCCGAGGATGGAAGGAAGATCCAAAATCAATTATTCTTAAAGAATATCAGACTAAATTTCATACATACATAATCAGTG : ATAAAAGGGTTTGGCTTTTGTCATGGACCCAAGCTACCATGCACTTCTCAATTGCAGTTTTTTGGATTACTTGGGCTCCAACCATTGTGGTATGATTCTGATAAGATTT</gDNA_template>
            <first_frame> E  K  F  P  F  T  L  F  A  F  F  S :   N  G  R  L  V  G  S  I  W  R  V  R  L  S  I  P  W  H  *  *  G  A  D  G  H  L  S  M  C  W  I  R  N  C  S  L  C  R  Y  L  F  G  N  A  L  G  F  D  :  W  P  E  K  S  Q  L  V  I  L  L  A  A  S  F  C  C  R  M  E  E  G  Y  W  T  S  N  Y  L  A  R  *  H  L  S  V  S  Y  L  Y  N  I  F  L  Q  L  R  D  M  D  G  C  *  A  *  *   : A  *  A  E  A  G  F  S  E  *  H  V  L  V  N  D  F  C  *  I  C  I  F  H  W  K  P  S  G  W  *  L  V  N  W  W  S  *  K  D  N  F  A  C  S  V  Q  C  S  G  N  N  G  S  *  C  S  G  L  C  Q  P  R  M  E  G  R  S  K  I  N  Y  S  *  R  I  S  D  *  I  S  Y  I  H  N  Q  * :   *  K  G  L  A  F  V  M  D  P  S  Y  H  A  L  L  N  C  S  F  L  D  Y  L  G  S  N  H  C  G  M  I  L  I  R  F </first_frame>
            <second_frame>  R  S  F  L  L  L  Y  S  L  S  S   : V  M  E  G  L  L  A  V  F  G  E  Y  D  L  A  F  H  G  I  S  R  E  Q  M  V  I  S  L  C  V  G  Y  A  T  A  L  F  V  G  T  F  L  G  M  L  S  D  L  I :   G  Q  R  K  V  S  L  L  F  C  L  L  H  L  F  V  A  V  W  R  R  V  T  G  H  P  T  I  W  L  A  S  I  C  L  S  L  T  S  T  I  F  F  F  N  F  E  T  W  M  V  V  E  H  D  K  :  L  E  Q  R  Q  D  S  V  N  D  M  F  W  L  M  T  F  V  E  S  A  S  F  I  G  S  Q  V  V  G  N  W  L  I  G  G  H  E  K  T  T  L  L  A  P  S  S  A  V  V  I  M  A  L  S  A  L  A  Y  V  S  R  G  W  K  E  D  P  K  S  I  I  L  K  E  Y  Q  T  K  F  H  T  Y  I  I  S   : D  K  R  V  W  L  L  S  W  T  Q  A  T  M  H  F  S  I  A  V  F  W  I  T  W  A  P  T  I  V  V  *  F  *  *  D   </second_frame>
            <third_frame>   E  V  S  F  Y  S  I  R  F  L  Q  :  *  W  K  A  C  W  Q  Y  L  E  S  T  T  *  H  S  M  A  L  V  G  S  R  W  S  S  L  Y  V  L  D  T  Q  L  L  S  L  S  V  P  F  W  E  C  S  R  I  *   : L  A  R  E  K  S  A  C  Y  F  A  C  C  I  F  L  L  P  Y  G  G  G  L  L  D  I  Q  L  F  G  S  L  A  S  V  C  L  L  P  L  Q  Y  F  S  S  T  S  R  H  G  W  L  L  S  M  I  S :   L  S  R  G  R  I  Q  *  M  T  C  F  G  *  *  L  L  L  N  L  H  L  S  L  E  A  K  W  L  V  T  G  *  L  V  V  M  K  R  Q  L  C  L  L  R  P  V  Q  W  *  *  W  L  L  V  L  W  L  M  S  A  E  D  G  R  K  I  Q  N  Q  L  F  L  K  N  I  R  L  N  F  I  H  T  *  S  V  :  I  K  G  F  G  F  C  H  G  P  K  L  P  C  T  S  Q  L  Q  F  F  G  L  L  G  L  Q  P  L  W  Y  D  S  D  K  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0203P08.2" strand="-"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73325" stop="73292"/>
                    <exon start="72457" stop="72313"/>
                    <exon start="71846" stop="71678"/>
                    <exon start="71130" stop="70872"/>
                    <exon start="69991" stop="69897"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSFLLLYSLSSVMEGLLAVFGEYDLAFHGISREQMVISLCVGYATALFVGTFLGMLSDLIGQRKVSLLFCLLHLFVAVWRRVTGHPTIWLASICLSLTSTIFFFNFETWMVVEHDKLEQRQDSVNDMFWLMTFVESASFIGSQVVGNWLIGGHEKTTLLAPSSAVVIMALSALAYVSRGWKEDPKSIILKEYQTKFHTYIISDKRVWLLSWTQATMHFSIAVFWITWAPTIVV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="75411" PGL_stop="75963"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75411" e_stop="75963"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="75411" e_stop="75963" e_length="553"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75411" stop="75963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201886" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCATCTTCGTATGAGTTCATATTTCATAATGACAACCCAATAATGGCAACTCTCAATCATGTGTTCCACTGTGTAGTCTCCTTTAAATGTTCTGTAATTTGGCTCATGTAGCATGTGAATTGTTTAGTCACTCTTCTTACATAGATACTGGCTATGTGGTTCAGTACTCCTATCTTTCTCCTTGTACTTTGAAAATCTGAATTTAGGCAATTCGATTGTTTTTTATGTCTTATTAGATTGTCTTTTGTCTTTCTTTTCCAGCCTTCTACGATATTTCTGTGATGTTGTATAACTTCTGCCAAAAAAAATTTTCTTAGGCTTTCAATAGGAGATAGCCTAAGTAAAGAGTCGCATTCAAGTCTGAACAATAATCTTTATGGCTCTGCTTATCAGTGTCTACACAGATTTTCTTACCGGGTGAACTATTTTTATGTCTTCTTTCAGCCTCTGATAATTCATTAGTGTCTTTAGAGTTCATCTTGATTGATGTTTGTTTTGATCCTTCACTAACTTGTATTTATTGTTGCGGATGATGGCAGTGCAAGGTGTGCAT</gDNA_template>
            <first_frame> S  S  S  Y  E  F  I  F  H  N  D  N  P  I  M  A  T  L  N  H  V  F  H  C  V  V  S  F  K  C  S  V  I  W  L  M  *  H  V  N  C  L  V  T  L  L  T  *  I  L  A  M  W  F  S  T  P  I  F  L  L  V  L  *  K  S  E  F  R  Q  F  D  C  F  L  C  L  I  R  L  S  F  V  F  L  F  Q  P  S  T  I  F  L  *  C  C  I  T  S  A  K  K  N  F  L  R  L  S  I  G  D  S  L  S  K  E  S  H  S  S  L  N  N  N  L  Y  G  S  A  Y  Q  C  L  H  R  F  S  Y  R  V  N  Y  F  Y  V  F  F  Q  P  L  I  I  H  *  C  L  *  S  S  S  *  L  M  F  V  L  I  L  H  *  L  V  F  I  V  A  D  D  G  S  A  R  C  A  </first_frame>
            <second_frame>  H  L  R  M  S  S  Y  F  I  M  T  T  Q  *  W  Q  L  S  I  M  C  S  T  V  *  S  P  L  N  V  L  *  F  G  S  C  S  M  *  I  V  *  S  L  F  L  H  R  Y  W  L  C  G  S  V  L  L  S  F  S  L  Y  F  E  N  L  N  L  G  N  S  I  V  F  Y  V  L  L  D  C  L  L  S  F  F  S  S  L  L  R  Y  F  C  D  V  V  *  L  L  P  K  K  I  F  L  G  F  Q  *  E  I  A  *  V  K  S  R  I  Q  V  *  T  I  I  F  M  A  L  L  I  S  V  Y  T  D  F  L  T  G  *  T  I  F  M  S  S  F  S  L  *  *  F  I  S  V  F  R  V  H  L  D  *  C  L  F  *  S  F  T  N  L  Y  L  L  L  R  M  M  A  V  Q  G  V  H </second_frame>
            <third_frame>   I  F  V  *  V  H  I  S  *  *  Q  P  N  N  G  N  S  Q  S  C  V  P  L  C  S  L  L  *  M  F  C  N  L  A  H  V  A  C  E  L  F  S  H  S  S  Y  I  D  T  G  Y  V  V  Q  Y  S  Y  L  S  P  C  T  L  K  I  *  I  *  A  I  R  L  F  F  M  S  Y  *  I  V  F  C  L  S  F  P  A  F  Y  D  I  S  V  M  L  Y  N  F  C  Q  K  K  F  S  *  A  F  N  R  R  *  P  K  *  R  V  A  F  K  S  E  Q  *  S  L  W  L  C  L  S  V  S  T  Q  I  F  L  P  G  E  L  F  L  C  L  L  S  A  S  D  N  S  L  V  S  L  E  F  I  L  I  D  V  C  F  D  P  S  L  T  C  I  Y  C  C  G  *  W  Q  C  K  V  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0203P08.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="83318" PGL_stop="76442"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83317" e_stop="82985"/>
            <exon e_start="81808" e_stop="81679"/>
            <exon e_start="81119" e_stop="80925"/>
            <exon e_start="79444" e_stop="79287"/>
            <exon e_start="78440" e_stop="78350"/>
            <exon e_start="78163" e_stop="78098"/>
            <exon e_start="77907" e_stop="77825"/>
            <exon e_start="77636" e_stop="77573"/>
            <exon e_start="77437" e_stop="77369"/>
            <exon e_start="76904" e_stop="76509"/>
            <exon e_start="76455" e_stop="76447"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.273" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.568" acc_prob="0.911" e_score="1.000"/>
          <exon-intron don_prob="0.930" acc_prob="0.941" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.625" e_score="1.000"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="83317" e_stop="82985" e_length="333"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.994">
            <gDNA_intron_boundary i_start="82984" i_stop="81809" i_length="1176"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81808" e_stop="81679" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.975" acc_prob="0.273">
            <gDNA_intron_boundary i_start="81678" i_stop="81120" i_length="559"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="81119" e_stop="80925" e_length="195"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.992">
            <gDNA_intron_boundary i_start="80924" i_stop="79445" i_length="1480"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="79444" e_stop="79287" e_length="158"/>
          </exon>
          <intron i_serial="4" don_prob="0.568" acc_prob="0.911">
            <gDNA_intron_boundary i_start="79286" i_stop="78441" i_length="846"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="78440" e_stop="78350" e_length="91"/>
          </exon>
          <intron i_serial="5" don_prob="0.930" acc_prob="0.941">
            <gDNA_intron_boundary i_start="78349" i_stop="78164" i_length="186"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="78163" e_stop="78098" e_length="66"/>
          </exon>
          <intron i_serial="6" don_prob="0.987" acc_prob="0.992">
            <gDNA_intron_boundary i_start="78097" i_stop="77908" i_length="190"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="77907" e_stop="77825" e_length="83"/>
          </exon>
          <intron i_serial="7" don_prob="0.900" acc_prob="0.917">
            <gDNA_intron_boundary i_start="77824" i_stop="77637" i_length="188"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="77636" e_stop="77573" e_length="64"/>
          </exon>
          <intron i_serial="8" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="77572" i_stop="77438" i_length="135"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="77437" e_stop="77369" e_length="69"/>
          </exon>
          <intron i_serial="9" don_prob="0.992" acc_prob="0.967">
            <gDNA_intron_boundary i_start="77368" i_stop="76905" i_length="464"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="76904" e_stop="76509" e_length="396"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.625">
            <gDNA_intron_boundary i_start="76508" i_stop="76456" i_length="53"/>
          </intron>
          <exon e_serial="11" e_score="0.667">
            <gDNA_exon_boundary e_start="76455" e_stop="76447" e_length="9"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83317" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="81088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83309" stop="82985"/>
              <exon start="81808" stop="81715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83307" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="80929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83298" stop="82985"/>
              <exon start="81808" stop="81704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83298" stop="82985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83286" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="80925"/>
              <exon start="79444" stop="79287"/>
              <exon start="78440" stop="78366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83284" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="80925"/>
              <exon start="79444" stop="79287"/>
              <exon start="78440" stop="78387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83284" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="80950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83282" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="80925"/>
              <exon start="79444" stop="79287"/>
              <exon start="78440" stop="78426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83281" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="80925"/>
              <exon start="79444" stop="79380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83280" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="80925"/>
              <exon start="79444" stop="79287"/>
              <exon start="78440" stop="78362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83280" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="80925"/>
              <exon start="79444" stop="79287"/>
              <exon start="78440" stop="78366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83279" stop="82985"/>
              <exon start="81808" stop="81713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279335" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83278" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="81005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83277" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="80932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83275" stop="82985"/>
              <exon start="81808" stop="81679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83274" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="80995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83271" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="80937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83271" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="80994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83271" stop="82985"/>
              <exon start="81808" stop="81679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83270" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="81083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83268" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="80925"/>
              <exon start="79444" stop="79304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83225" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="80932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83225" stop="82985"/>
              <exon start="81808" stop="81679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83224" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="80925"/>
              <exon start="79444" stop="79367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83224" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="80925"/>
              <exon start="79444" stop="79367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83195" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="80925"/>
              <exon start="79444" stop="79287"/>
              <exon start="78440" stop="78367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83195" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="80925"/>
              <exon start="79444" stop="79311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83195" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="80925"/>
              <exon start="79444" stop="79332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452500" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83174" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="80925"/>
              <exon start="79444" stop="79332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81806" stop="81679"/>
              <exon start="81119" stop="80925"/>
              <exon start="79444" stop="79287"/>
              <exon start="78440" stop="78350"/>
              <exon start="78163" stop="78098"/>
              <exon start="77907" stop="77845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81776" stop="81679"/>
              <exon start="81119" stop="80925"/>
              <exon start="79444" stop="79304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81775" stop="81679"/>
              <exon start="81119" stop="80925"/>
              <exon start="79444" stop="79287"/>
              <exon start="78440" stop="78350"/>
              <exon start="78163" stop="78098"/>
              <exon start="77907" stop="77884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81753" stop="81679"/>
              <exon start="81119" stop="80925"/>
              <exon start="79444" stop="79287"/>
              <exon start="78440" stop="78350"/>
              <exon start="78163" stop="78159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81753" stop="81679"/>
              <exon start="81119" stop="80925"/>
              <exon start="79444" stop="79287"/>
              <exon start="78440" stop="78373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81753" stop="81679"/>
              <exon start="81119" stop="80925"/>
              <exon start="79444" stop="79303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81753" stop="81679"/>
              <exon start="81119" stop="80925"/>
              <exon start="79444" stop="79372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81721" stop="81679"/>
              <exon start="81119" stop="80925"/>
              <exon start="79444" stop="79287"/>
              <exon start="78440" stop="78350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81044" stop="80925"/>
              <exon start="79444" stop="79287"/>
              <exon start="78440" stop="78350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80983" stop="80925"/>
              <exon start="79444" stop="79287"/>
              <exon start="78440" stop="78350"/>
              <exon start="78163" stop="78098"/>
              <exon start="77907" stop="77825"/>
              <exon start="77636" stop="77597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619679" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79440" stop="79287"/>
              <exon start="78440" stop="78350"/>
              <exon start="78163" stop="78098"/>
              <exon start="77907" stop="77825"/>
              <exon start="77636" stop="77573"/>
              <exon start="77437" stop="77369"/>
              <exon start="76904" stop="76675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79367" stop="79287"/>
              <exon start="78440" stop="78350"/>
              <exon start="78163" stop="78098"/>
              <exon start="77907" stop="77825"/>
              <exon start="77636" stop="77573"/>
              <exon start="77437" stop="77369"/>
              <exon start="76904" stop="76682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78366" stop="78350"/>
              <exon start="78163" stop="78098"/>
              <exon start="77907" stop="77825"/>
              <exon start="77636" stop="77573"/>
              <exon start="77437" stop="77369"/>
              <exon start="76904" stop="76697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255943" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77879" stop="77825"/>
              <exon start="77636" stop="77573"/>
              <exon start="77437" stop="77369"/>
              <exon start="76904" stop="76686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77593" stop="77573"/>
              <exon start="77437" stop="77369"/>
              <exon start="76904" stop="76509"/>
              <exon start="76455" stop="76447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77593" stop="77573"/>
              <exon start="77437" stop="77369"/>
              <exon start="76904" stop="76509"/>
              <exon start="76455" stop="76447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77593" stop="77573"/>
              <exon start="77437" stop="77369"/>
              <exon start="76904" stop="76621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77593" stop="77573"/>
              <exon start="77437" stop="77369"/>
              <exon start="76904" stop="76621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420271" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77593" stop="77573"/>
              <exon start="77437" stop="77369"/>
              <exon start="76904" stop="76621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77592" stop="77573"/>
              <exon start="77437" stop="77369"/>
              <exon start="76904" stop="76509"/>
              <exon start="76455" stop="76447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270959" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGTGGAGAGTGAAAAGGGTCCCAATAGCAGCATACAAGAGAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG : TGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG : ATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAG : GCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAG : ATACTTCAAGGGCCCTGAACTTCTAGTTGACTTGCAAGACTATGACTATTCTTTGGACATGTGGAGCCTTGGCTGCATGTTTGCAGGAATG : ATTTTCCGCAAGGAACCTTTCTTTTATGGCCATGATAATCAGGATCAGCTCGTCAAAATTGCAAAG : GTACTTGGGACAGATGAGTTGAATGCGTACTTGCACAAGTATCAACTAGAGCTTGATCCTCAGCTAGAGGCTATGGTTGGGAG : ACACAGTAGGAAGCCGTGGTCCAAATTTATTAATGCAGACAATCAGCATCTAGTGTCACCGGAG : GCTATAGATTATCTTGACAAGCTTCTCCGTTACGATCATCAGACTAGACTTACGGCAAAAGAAGCAATG : GCCCATCCATATTTCGGGCAAGTGAGGGCTGCTGAAACTAGCAGAATGAGGACACAGTAGCTTTCTTGTCTTGCTGTTAATGGGAAGAAAAAAAACTGTGTAATGTACCTTGTGTATCCATTTAAGTGACATTCGTGAGAACTATGTGGATTTGAACTTGAGCAGACATCTGAATTCAGGAATTACAGATCTTCATCATTGAACATTTCAAGAGAAATAGTGTTTTTTAGATTTCCTGATCGTGACCTTGATTGCAAATGGAAGTGACTTGCTGGGCGTCAAAAGTCACCCCACCCCCCCTTCCCCAAAGATACTATCTCCCTAGATGTGAACAAAAGCAGATTTTTGAAAATTAGTTCACTTTGTATATTAGTGCACTGGATTTTTCTGCATTCA : AAGAATGAA</gDNA_template>
            <first_frame> L  W  R  V  K  R  V  P  I  A  A  Y  K  R  E  Q  K  A  F  P  I  Y  G  F  F  L  K  M  V  C  E  *  S  S  V  I  A  L  A  V  A  S  N  R  S  G  A  Q  F  L  R  C  I  Y  P  A  C  V  F  F  V  V  P  F  P  K  S  D  T  F  I  N  N  S  S  V  S  D  F  R  I  N  H  V  Q  S  S  S  I  H  R  Y  Q  C  A  S  S  *  G  I  L  G  L  R  I  A  N  C  S  M  G  :  *  S  G  *  L  *  G  C  S  K  S  W  K  R  K  I  Q  *  S  F  *  R  Y  K  C  *  Q  Q  G  E  V  H  N  Q  D  P  E  T  C  *  E  E  K   : D  Q  K  R  D  K  D  I  A  K  S  L  W  W  T  K  Y  C  Q  T  P  *  Y  R  Q  R  S  A  F  K  N  S  K  L  D  F  *  V  R  E  Q  H  R  F  Q  G  F  V  P  N  A  N  R  L  *  H  T  V  L  H  I  *  A  S  Q   : G  T  R  L  L  P  F  T  G  N  N  A  Q  G  C  Q  T  S  *  R  Y  D  R  P  *  T  A  E  A  S  L  D  R  L  G  S  C  R  I  L  P  P  R  E  G  I  *  C  S  C  G  F  K  :  I  L  Q  G  P  *  T  S  S  *  L  A  R  L  *  L  F  F  G  H  V  E  P  W  L  H  V  C  R  N   : D  F  P  Q  G  T  F  L  L  W  P  *  *  S  G  S  A  R  Q  N  C  K   : G  T  W  D  R  *  V  E  C  V  L  A  Q  V  S  T  R  A  *  S  S  A  R  G  Y  G  W  E  :  T  Q  *  E  A  V  V  Q  I  Y  *  C  R  Q  S  A  S  S  V  T  G   : G  Y  R  L  S  *  Q  A  S  P  L  R  S  S  D  *  T  Y  G  K  R  S  N   : G  P  S  I  F  R  A  S  E  G  C  *  N  *  Q  N  E  D  T  V  A  F  L  S  C  C  *  W  E  E  K  K  L  C  N  V  P  C  V  S  I  *  V  T  F  V  R  T  M  W  I  *  T  *  A  D  I  *  I  Q  E  L  Q  I  F  I  I  E  H  F  K  R  N  S  V  F  *  I  S  *  S  *  P  *  L  Q  M  E  V  T  C  W  A  S  K  V  T  P  P  P  L  P  Q  R  Y  Y  L  P  R  C  E  Q  K  Q  I  F  E  N  *  F  T  L  Y  I  S  A  L  D  F  S  A  F   : K  E  *  </first_frame>
            <second_frame>  C  G  E  *  K  G  S  Q  *  Q  H  T  R  E  S  K  K  L  S  Q  S  M  A  F  S  *  K  W  C  V  S  K  V  V  L  L  L  W  R  L  H  Q  T  E  A  G  P  N  S  F  V  A  S  T  Q  P  A  S  S  L  L  S  L  F  R  N  P  I  P  L  S  I  T  L  Q  S  L  I  S  G  *  T  M  S  K  A  R  V  Y  T  D  I  N  V  L  R  P  R  E  Y  W  D  Y  E  S  L  T  V  Q  W  G :   D  Q  D  D  Y  E  V  V  R  K  V  G  R  G  K  Y  S  E  V  F  E  G  I  N  V  N  S  R  E  K  C  I  I  K  I  L  K  P  V  K  K  K  K  :  I  K  R  E  I  K  I  L  Q  N  L  C  G  G  P  N  I  V  K  L  L  D  I  V  R  D  Q  H  S  K  T  P  S  L  I  F  E  Y  V  N  S  T  D  F  K  V  L  Y  P  T  L  T  D  Y  D  I  R  Y  Y  I  Y  E  L  L  K  :  A  L  D  Y  C  H  S  Q  G  I  M  H  R  D  V  K  P  H  N  V  M  I  D  H  E  L  R  K  L  R  L  I  D  W  G  L  A  E  F  Y  H  P  G  K  E  Y  N  V  R  V  A  S  R :   Y  F  K  G  P  E  L  L  V  D  L  Q  D  Y  D  Y  S  L  D  M  W  S  L  G  C  M  F  A  G  M  :  I  F  R  K  E  P  F  F  Y  G  H  D  N  Q  D  Q  L  V  K  I  A  K  :  V  L  G  T  D  E  L  N  A  Y  L  H  K  Y  Q  L  E  L  D  P  Q  L  E  A  M  V  G  R :   H  S  R  K  P  W  S  K  F  I  N  A  D  N  Q  H  L  V  S  P  E  :  A  I  D  Y  L  D  K  L  L  R  Y  D  H  Q  T  R  L  T  A  K  E  A  M  :  A  H  P  Y  F  G  Q  V  R  A  A  E  T  S  R  M  R  T  Q  *  L  S  C  L  A  V  N  G  K  K  K  N  C  V  M  Y  L  V  Y  P  F  K  *  H  S  *  E  L  C  G  F  E  L  E  Q  T  S  E  F  R  N  Y  R  S  S  S  L  N  I  S  R  E  I  V  F  F  R  F  P  D  R  D  L  D  C  K  W  K  *  L  A  G  R  Q  K  S  P  H  P  P  F  P  K  D  T  I  S  L  D  V  N  K  S  R  F  L  K  I  S  S  L  C  I  L  V  H  W  I  F  L  H  S  :  K  N  E </second_frame>
            <third_frame>   V  E  S  E  K  G  P  N  S  S  I  Q  E  R  A  K  S  F  P  N  L  W  L  F  P  K  N  G  V  *  V  K  *  C  Y  C  S  G  G  C  I  K  Q  K  R  G  P  I  P  S  L  H  L  P  S  L  R  L  L  C  C  P  F  S  E  I  R  Y  L  Y  Q  *  L  F  S  L  *  F  P  D  K  P  C  P  K  L  E  Y  T  P  I  S  M  C  F  V  L  G  N  I  G  I  T  N  R  *  L  F  N  G   : V  I  R  M  T  M  R  L  F  E  K  L  E  E  E  N  T  V  K  F  L  K  V  *  M  L  T  A  G  R  S  A  *  S  R  S  *  N  L  L  R  R  K  R :   S  K  E  R  *  R  Y  C  K  I  S  V  V  D  Q  I  L  S  N  S  L  I  S  S  E  I  S  I  Q  K  L  Q  A  *  F  L  S  T  *  T  A  Q  I  S  R  F  C  T  Q  R  *  Q  T  M  T  Y  G  T  T  Y  M  S  F  S  R :   H  *  I  I  A  I  H  R  E  *  C  T  G  M  S  N  L  I  T  L  *  *  T  M  N  C  G  S  F  A  *  *  I  G  V  L  P  N  F  T  T  Q  G  R  N  I  M  F  V  W  L  Q   : D  T  S  R  A  L  N  F  *  L  T  C  K  T  M  T  I  L  W  T  C  G  A  L  A  A  C  L  Q  E  * :   F  S  A  R  N  L  S  F  M  A  M  I  I  R  I  S  S  S  K  L  Q  R :   Y  L  G  Q  M  S  *  M  R  T  C  T  S  I  N  *  S  L  I  L  S  *  R  L  W  L  G   : D  T  V  G  S  R  G  P  N  L  L  M  Q  T  I  S  I  *  C  H  R  R :   L  *  I  I  L  T  S  F  S  V  T  I  I  R  L  D  L  R  Q  K  K  Q  W :   P  I  H  I  S  G  K  *  G  L  L  K  L  A  E  *  G  H  S  S  F  L  V  L  L  L  M  G  R  K  K  T  V  *  C  T  L  C  I  H  L  S  D  I  R  E  N  Y  V  D  L  N  L  S  R  H  L  N  S  G  I  T  D  L  H  H  *  T  F  Q  E  K  *  C  F  L  D  F  L  I  V  T  L  I  A  N  G  S  D  L  L  G  V  K  S  H  P  T  P  P  S  P  K  I  L  S  P  *  M  *  T  K  A  D  F  *  K  L  V  H  F  V  Y  *  C  T  G  F  F  C  I  Q :   R  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0203P08.2" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83073" stop="82985"/>
                    <exon start="81808" stop="81679"/>
                    <exon start="81119" stop="80925"/>
                    <exon start="79444" stop="79287"/>
                    <exon start="78440" stop="78350"/>
                    <exon start="78163" stop="78098"/>
                    <exon start="77907" stop="77825"/>
                    <exon start="77636" stop="77573"/>
                    <exon start="77437" stop="77369"/>
                    <exon start="76904" stop="76845"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1002</number_coding_nucleotides>
                  <number_encoded_amino_acids>334</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMSKARVYTDINVLRPREYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNSREKCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNQDQLVKIAKVLGTDELNAYLHKYQLELDPQLEAMVGRHSRKPWSKFINADNQHLVSPEAIDYLDKLLRYDHQTRLTAKEAMAHPYFGQVRAAETSRMRTQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="83318" e_stop="82985"/>
            <exon e_start="81808" e_stop="81679"/>
            <exon e_start="81119" e_stop="80925"/>
            <exon e_start="79444" e_stop="79287"/>
            <exon e_start="78440" e_stop="78350"/>
            <exon e_start="78163" e_stop="78098"/>
            <exon e_start="77907" e_stop="77825"/>
            <exon e_start="77636" e_stop="77573"/>
            <exon e_start="77437" e_stop="77369"/>
            <exon e_start="76904" e_stop="76533"/>
            <exon e_start="76455" e_stop="76442"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.273" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.568" acc_prob="0.911" e_score="1.000"/>
          <exon-intron don_prob="0.930" acc_prob="0.941" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.625" e_score="0.995"/>
          <exon-only e_score="0.643"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="83318" e_stop="82985" e_length="334"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.994">
            <gDNA_intron_boundary i_start="82984" i_stop="81809" i_length="1176"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81808" e_stop="81679" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.975" acc_prob="0.273">
            <gDNA_intron_boundary i_start="81678" i_stop="81120" i_length="559"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="81119" e_stop="80925" e_length="195"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.992">
            <gDNA_intron_boundary i_start="80924" i_stop="79445" i_length="1480"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="79444" e_stop="79287" e_length="158"/>
          </exon>
          <intron i_serial="4" don_prob="0.568" acc_prob="0.911">
            <gDNA_intron_boundary i_start="79286" i_stop="78441" i_length="846"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="78440" e_stop="78350" e_length="91"/>
          </exon>
          <intron i_serial="5" don_prob="0.930" acc_prob="0.941">
            <gDNA_intron_boundary i_start="78349" i_stop="78164" i_length="186"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="78163" e_stop="78098" e_length="66"/>
          </exon>
          <intron i_serial="6" don_prob="0.987" acc_prob="0.992">
            <gDNA_intron_boundary i_start="78097" i_stop="77908" i_length="190"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="77907" e_stop="77825" e_length="83"/>
          </exon>
          <intron i_serial="7" don_prob="0.900" acc_prob="0.917">
            <gDNA_intron_boundary i_start="77824" i_stop="77637" i_length="188"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="77636" e_stop="77573" e_length="64"/>
          </exon>
          <intron i_serial="8" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="77572" i_stop="77438" i_length="135"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="77437" e_stop="77369" e_length="69"/>
          </exon>
          <intron i_serial="9" don_prob="0.992" acc_prob="0.967">
            <gDNA_intron_boundary i_start="77368" i_stop="76905" i_length="464"/>
          </intron>
          <exon e_serial="10" e_score="0.995">
            <gDNA_exon_boundary e_start="76904" e_stop="76533" e_length="372"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.625">
            <gDNA_intron_boundary i_start="76532" i_stop="76456" i_length="77"/>
          </intron>
          <exon e_serial="11" e_score="0.643">
            <gDNA_exon_boundary e_start="76455" e_stop="76442" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83318" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="80925"/>
              <exon start="79444" stop="79287"/>
              <exon start="78440" stop="78350"/>
              <exon start="78163" stop="78098"/>
              <exon start="77907" stop="77825"/>
              <exon start="77636" stop="77573"/>
              <exon start="77437" stop="77369"/>
              <exon start="76904" stop="76533"/>
              <exon start="76455" stop="76442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83317" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="81088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83309" stop="82985"/>
              <exon start="81808" stop="81715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83307" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="80929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83298" stop="82985"/>
              <exon start="81808" stop="81704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83298" stop="82985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83286" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="80925"/>
              <exon start="79444" stop="79287"/>
              <exon start="78440" stop="78366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83284" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="80925"/>
              <exon start="79444" stop="79287"/>
              <exon start="78440" stop="78387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83284" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="80950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83282" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="80925"/>
              <exon start="79444" stop="79287"/>
              <exon start="78440" stop="78426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83281" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="80925"/>
              <exon start="79444" stop="79380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83280" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="80925"/>
              <exon start="79444" stop="79287"/>
              <exon start="78440" stop="78362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83280" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="80925"/>
              <exon start="79444" stop="79287"/>
              <exon start="78440" stop="78366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83279" stop="82985"/>
              <exon start="81808" stop="81713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279335" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83278" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="81005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83277" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="80932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83275" stop="82985"/>
              <exon start="81808" stop="81679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83274" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="80995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83271" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="80937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83271" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="80994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83271" stop="82985"/>
              <exon start="81808" stop="81679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83270" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="81083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83268" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="80925"/>
              <exon start="79444" stop="79304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83225" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="80932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83225" stop="82985"/>
              <exon start="81808" stop="81679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83224" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="80925"/>
              <exon start="79444" stop="79367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83224" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="80925"/>
              <exon start="79444" stop="79367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83195" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="80925"/>
              <exon start="79444" stop="79287"/>
              <exon start="78440" stop="78367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83195" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="80925"/>
              <exon start="79444" stop="79311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83195" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="80925"/>
              <exon start="79444" stop="79332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452500" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83174" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="80925"/>
              <exon start="79444" stop="79332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81806" stop="81679"/>
              <exon start="81119" stop="80925"/>
              <exon start="79444" stop="79287"/>
              <exon start="78440" stop="78350"/>
              <exon start="78163" stop="78098"/>
              <exon start="77907" stop="77845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81776" stop="81679"/>
              <exon start="81119" stop="80925"/>
              <exon start="79444" stop="79304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81775" stop="81679"/>
              <exon start="81119" stop="80925"/>
              <exon start="79444" stop="79287"/>
              <exon start="78440" stop="78350"/>
              <exon start="78163" stop="78098"/>
              <exon start="77907" stop="77884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81753" stop="81679"/>
              <exon start="81119" stop="80925"/>
              <exon start="79444" stop="79287"/>
              <exon start="78440" stop="78350"/>
              <exon start="78163" stop="78159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81753" stop="81679"/>
              <exon start="81119" stop="80925"/>
              <exon start="79444" stop="79287"/>
              <exon start="78440" stop="78373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81753" stop="81679"/>
              <exon start="81119" stop="80925"/>
              <exon start="79444" stop="79303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81753" stop="81679"/>
              <exon start="81119" stop="80925"/>
              <exon start="79444" stop="79372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81721" stop="81679"/>
              <exon start="81119" stop="80925"/>
              <exon start="79444" stop="79287"/>
              <exon start="78440" stop="78350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81044" stop="80925"/>
              <exon start="79444" stop="79287"/>
              <exon start="78440" stop="78350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80983" stop="80925"/>
              <exon start="79444" stop="79287"/>
              <exon start="78440" stop="78350"/>
              <exon start="78163" stop="78098"/>
              <exon start="77907" stop="77825"/>
              <exon start="77636" stop="77597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619679" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79440" stop="79287"/>
              <exon start="78440" stop="78350"/>
              <exon start="78163" stop="78098"/>
              <exon start="77907" stop="77825"/>
              <exon start="77636" stop="77573"/>
              <exon start="77437" stop="77369"/>
              <exon start="76904" stop="76675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79367" stop="79287"/>
              <exon start="78440" stop="78350"/>
              <exon start="78163" stop="78098"/>
              <exon start="77907" stop="77825"/>
              <exon start="77636" stop="77573"/>
              <exon start="77437" stop="77369"/>
              <exon start="76904" stop="76682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78366" stop="78350"/>
              <exon start="78163" stop="78098"/>
              <exon start="77907" stop="77825"/>
              <exon start="77636" stop="77573"/>
              <exon start="77437" stop="77369"/>
              <exon start="76904" stop="76697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255943" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77879" stop="77825"/>
              <exon start="77636" stop="77573"/>
              <exon start="77437" stop="77369"/>
              <exon start="76904" stop="76686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77593" stop="77573"/>
              <exon start="77437" stop="77369"/>
              <exon start="76904" stop="76621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77593" stop="77573"/>
              <exon start="77437" stop="77369"/>
              <exon start="76904" stop="76621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420271" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77593" stop="77573"/>
              <exon start="77437" stop="77369"/>
              <exon start="76904" stop="76621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405996" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTGTGGAGAGTGAAAAGGGTCCCAATAGCAGCATACAAGAGAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG : TGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG : ATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAG : GCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAG : ATACTTCAAGGGCCCTGAACTTCTAGTTGACTTGCAAGACTATGACTATTCTTTGGACATGTGGAGCCTTGGCTGCATGTTTGCAGGAATG : ATTTTCCGCAAGGAACCTTTCTTTTATGGCCATGATAATCAGGATCAGCTCGTCAAAATTGCAAAG : GTACTTGGGACAGATGAGTTGAATGCGTACTTGCACAAGTATCAACTAGAGCTTGATCCTCAGCTAGAGGCTATGGTTGGGAG : ACACAGTAGGAAGCCGTGGTCCAAATTTATTAATGCAGACAATCAGCATCTAGTGTCACCGGAG : GCTATAGATTATCTTGACAAGCTTCTCCGTTACGATCATCAGACTAGACTTACGGCAAAAGAAGCAATG : GCCCATCCATATTTCGGGCAAGTGAGGGCTGCTGAAACTAGCAGAATGAGGACACAGTAGCTTTCTTGTCTTGCTGTTAATGGGAAGAAAAAAAACTGTGTAATGTACCTTGTGTATCCATTTAAGTGACATTCGTGAGAACTATGTGGATTTGAACTTGAGCAGACATCTGAATTCAGGAATTACAGATCTTCATCATTGAACATTTCAAGAGAAATAGTGTTTTTTAGATTTCCTGATCGTGACCTTGATTGCAAATGGAAGTGACTTGCTGGGCGTCAAAAGTCACCCCACCCCCCCTTCCCCAAAGATACTATCTCCCTAGATGTGAACAAAAGCAGATTTTTGAAAATTAGTTCACTTTGTATATTA : AAGAATGAAGAGAA</gDNA_template>
            <first_frame> P  V  E  S  E  K  G  P  N  S  S  I  Q  E  R  A  K  S  F  P  N  L  W  L  F  P  K  N  G  V  *  V  K  *  C  Y  C  S  G  G  C  I  K  Q  K  R  G  P  I  P  S  L  H  L  P  S  L  R  L  L  C  C  P  F  S  E  I  R  Y  L  Y  Q  *  L  F  S  L  *  F  P  D  K  P  C  P  K  L  E  Y  T  P  I  S  M  C  F  V  L  G  N  I  G  I  T  N  R  *  L  F  N  G   : V  I  R  M  T  M  R  L  F  E  K  L  E  E  E  N  T  V  K  F  L  K  V  *  M  L  T  A  G  R  S  A  *  S  R  S  *  N  L  L  R  R  K  R :   S  K  E  R  *  R  Y  C  K  I  S  V  V  D  Q  I  L  S  N  S  L  I  S  S  E  I  S  I  Q  K  L  Q  A  *  F  L  S  T  *  T  A  Q  I  S  R  F  C  T  Q  R  *  Q  T  M  T  Y  G  T  T  Y  M  S  F  S  R :   H  *  I  I  A  I  H  R  E  *  C  T  G  M  S  N  L  I  T  L  *  *  T  M  N  C  G  S  F  A  *  *  I  G  V  L  P  N  F  T  T  Q  G  R  N  I  M  F  V  W  L  Q   : D  T  S  R  A  L  N  F  *  L  T  C  K  T  M  T  I  L  W  T  C  G  A  L  A  A  C  L  Q  E  * :   F  S  A  R  N  L  S  F  M  A  M  I  I  R  I  S  S  S  K  L  Q  R :   Y  L  G  Q  M  S  *  M  R  T  C  T  S  I  N  *  S  L  I  L  S  *  R  L  W  L  G   : D  T  V  G  S  R  G  P  N  L  L  M  Q  T  I  S  I  *  C  H  R  R :   L  *  I  I  L  T  S  F  S  V  T  I  I  R  L  D  L  R  Q  K  K  Q  W :   P  I  H  I  S  G  K  *  G  L  L  K  L  A  E  *  G  H  S  S  F  L  V  L  L  L  M  G  R  K  K  T  V  *  C  T  L  C  I  H  L  S  D  I  R  E  N  Y  V  D  L  N  L  S  R  H  L  N  S  G  I  T  D  L  H  H  *  T  F  Q  E  K  *  C  F  L  D  F  L  I  V  T  L  I  A  N  G  S  D  L  L  G  V  K  S  H  P  T  P  P  S  P  K  I  L  S  P  *  M  *  T  K  A  D  F  *  K  L  V  H  F  V  Y  * :   R  M  K  R  </first_frame>
            <second_frame>  L  W  R  V  K  R  V  P  I  A  A  Y  K  R  E  Q  K  A  F  P  I  Y  G  F  F  L  K  M  V  C  E  *  S  S  V  I  A  L  A  V  A  S  N  R  S  G  A  Q  F  L  R  C  I  Y  P  A  C  V  F  F  V  V  P  F  P  K  S  D  T  F  I  N  N  S  S  V  S  D  F  R  I  N  H  V  Q  S  S  S  I  H  R  Y  Q  C  A  S  S  *  G  I  L  G  L  R  I  A  N  C  S  M  G  :  *  S  G  *  L  *  G  C  S  K  S  W  K  R  K  I  Q  *  S  F  *  R  Y  K  C  *  Q  Q  G  E  V  H  N  Q  D  P  E  T  C  *  E  E  K   : D  Q  K  R  D  K  D  I  A  K  S  L  W  W  T  K  Y  C  Q  T  P  *  Y  R  Q  R  S  A  F  K  N  S  K  L  D  F  *  V  R  E  Q  H  R  F  Q  G  F  V  P  N  A  N  R  L  *  H  T  V  L  H  I  *  A  S  Q   : G  T  R  L  L  P  F  T  G  N  N  A  Q  G  C  Q  T  S  *  R  Y  D  R  P  *  T  A  E  A  S  L  D  R  L  G  S  C  R  I  L  P  P  R  E  G  I  *  C  S  C  G  F  K  :  I  L  Q  G  P  *  T  S  S  *  L  A  R  L  *  L  F  F  G  H  V  E  P  W  L  H  V  C  R  N   : D  F  P  Q  G  T  F  L  L  W  P  *  *  S  G  S  A  R  Q  N  C  K   : G  T  W  D  R  *  V  E  C  V  L  A  Q  V  S  T  R  A  *  S  S  A  R  G  Y  G  W  E  :  T  Q  *  E  A  V  V  Q  I  Y  *  C  R  Q  S  A  S  S  V  T  G   : G  Y  R  L  S  *  Q  A  S  P  L  R  S  S  D  *  T  Y  G  K  R  S  N   : G  P  S  I  F  R  A  S  E  G  C  *  N  *  Q  N  E  D  T  V  A  F  L  S  C  C  *  W  E  E  K  K  L  C  N  V  P  C  V  S  I  *  V  T  F  V  R  T  M  W  I  *  T  *  A  D  I  *  I  Q  E  L  Q  I  F  I  I  E  H  F  K  R  N  S  V  F  *  I  S  *  S  *  P  *  L  Q  M  E  V  T  C  W  A  S  K  V  T  P  P  P  L  P  Q  R  Y  Y  L  P  R  C  E  Q  K  Q  I  F  E  N  *  F  T  L  Y  I   : K  E  *  R  E </second_frame>
            <third_frame>   C  G  E  *  K  G  S  Q  *  Q  H  T  R  E  S  K  K  L  S  Q  S  M  A  F  S  *  K  W  C  V  S  K  V  V  L  L  L  W  R  L  H  Q  T  E  A  G  P  N  S  F  V  A  S  T  Q  P  A  S  S  L  L  S  L  F  R  N  P  I  P  L  S  I  T  L  Q  S  L  I  S  G  *  T  M  S  K  A  R  V  Y  T  D  I  N  V  L  R  P  R  E  Y  W  D  Y  E  S  L  T  V  Q  W  G :   D  Q  D  D  Y  E  V  V  R  K  V  G  R  G  K  Y  S  E  V  F  E  G  I  N  V  N  S  R  E  K  C  I  I  K  I  L  K  P  V  K  K  K  K  :  I  K  R  E  I  K  I  L  Q  N  L  C  G  G  P  N  I  V  K  L  L  D  I  V  R  D  Q  H  S  K  T  P  S  L  I  F  E  Y  V  N  S  T  D  F  K  V  L  Y  P  T  L  T  D  Y  D  I  R  Y  Y  I  Y  E  L  L  K  :  A  L  D  Y  C  H  S  Q  G  I  M  H  R  D  V  K  P  H  N  V  M  I  D  H  E  L  R  K  L  R  L  I  D  W  G  L  A  E  F  Y  H  P  G  K  E  Y  N  V  R  V  A  S  R :   Y  F  K  G  P  E  L  L  V  D  L  Q  D  Y  D  Y  S  L  D  M  W  S  L  G  C  M  F  A  G  M  :  I  F  R  K  E  P  F  F  Y  G  H  D  N  Q  D  Q  L  V  K  I  A  K  :  V  L  G  T  D  E  L  N  A  Y  L  H  K  Y  Q  L  E  L  D  P  Q  L  E  A  M  V  G  R :   H  S  R  K  P  W  S  K  F  I  N  A  D  N  Q  H  L  V  S  P  E  :  A  I  D  Y  L  D  K  L  L  R  Y  D  H  Q  T  R  L  T  A  K  E  A  M  :  A  H  P  Y  F  G  Q  V  R  A  A  E  T  S  R  M  R  T  Q  *  L  S  C  L  A  V  N  G  K  K  K  N  C  V  M  Y  L  V  Y  P  F  K  *  H  S  *  E  L  C  G  F  E  L  E  Q  T  S  E  F  R  N  Y  R  S  S  S  L  N  I  S  R  E  I  V  F  F  R  F  P  D  R  D  L  D  C  K  W  K  *  L  A  G  R  Q  K  S  P  H  P  P  F  P  K  D  T  I  S  L  D  V  N  K  S  R  F  L  K  I  S  S  L  C  I  L  :  K  N  E  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0203P08.2" strand="-"/>
                <serials PGL_serial="20" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83073" stop="82985"/>
                    <exon start="81808" stop="81679"/>
                    <exon start="81119" stop="80925"/>
                    <exon start="79444" stop="79287"/>
                    <exon start="78440" stop="78350"/>
                    <exon start="78163" stop="78098"/>
                    <exon start="77907" stop="77825"/>
                    <exon start="77636" stop="77573"/>
                    <exon start="77437" stop="77369"/>
                    <exon start="76904" stop="76845"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1002</number_coding_nucleotides>
                  <number_encoded_amino_acids>334</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMSKARVYTDINVLRPREYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNSREKCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNQDQLVKIAKVLGTDELNAYLHKYQLELDPQLEAMVGRHSRKPWSKFINADNQHLVSPEAIDYLDKLLRYDHQTRLTAKEAMAHPYFGQVRAAETSRMRTQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="83317" e_stop="82985"/>
            <exon e_start="81808" e_stop="81679"/>
            <exon e_start="81119" e_stop="80925"/>
            <exon e_start="79444" e_stop="79287"/>
            <exon e_start="78440" e_stop="78350"/>
            <exon e_start="78163" e_stop="78098"/>
            <exon e_start="77907" e_stop="77825"/>
            <exon e_start="77636" e_stop="77573"/>
            <exon e_start="77437" e_stop="77369"/>
            <exon e_start="76904" e_stop="76686"/>
            <exon e_start="76455" e_stop="76447"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.273" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.568" acc_prob="0.911" e_score="1.000"/>
          <exon-intron don_prob="0.930" acc_prob="0.941" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.625" e_score="0.991"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="83317" e_stop="82985" e_length="333"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.994">
            <gDNA_intron_boundary i_start="82984" i_stop="81809" i_length="1176"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81808" e_stop="81679" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.975" acc_prob="0.273">
            <gDNA_intron_boundary i_start="81678" i_stop="81120" i_length="559"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="81119" e_stop="80925" e_length="195"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.992">
            <gDNA_intron_boundary i_start="80924" i_stop="79445" i_length="1480"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="79444" e_stop="79287" e_length="158"/>
          </exon>
          <intron i_serial="4" don_prob="0.568" acc_prob="0.911">
            <gDNA_intron_boundary i_start="79286" i_stop="78441" i_length="846"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="78440" e_stop="78350" e_length="91"/>
          </exon>
          <intron i_serial="5" don_prob="0.930" acc_prob="0.941">
            <gDNA_intron_boundary i_start="78349" i_stop="78164" i_length="186"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="78163" e_stop="78098" e_length="66"/>
          </exon>
          <intron i_serial="6" don_prob="0.987" acc_prob="0.992">
            <gDNA_intron_boundary i_start="78097" i_stop="77908" i_length="190"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="77907" e_stop="77825" e_length="83"/>
          </exon>
          <intron i_serial="7" don_prob="0.900" acc_prob="0.917">
            <gDNA_intron_boundary i_start="77824" i_stop="77637" i_length="188"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="77636" e_stop="77573" e_length="64"/>
          </exon>
          <intron i_serial="8" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="77572" i_stop="77438" i_length="135"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="77437" e_stop="77369" e_length="69"/>
          </exon>
          <intron i_serial="9" don_prob="0.992" acc_prob="0.967">
            <gDNA_intron_boundary i_start="77368" i_stop="76905" i_length="464"/>
          </intron>
          <exon e_serial="10" e_score="0.991">
            <gDNA_exon_boundary e_start="76904" e_stop="76686" e_length="219"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.625">
            <gDNA_intron_boundary i_start="76685" i_stop="76456" i_length="230"/>
          </intron>
          <exon e_serial="11" e_score="0.667">
            <gDNA_exon_boundary e_start="76455" e_stop="76447" e_length="9"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83317" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="81088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83309" stop="82985"/>
              <exon start="81808" stop="81715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83307" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="80929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83298" stop="82985"/>
              <exon start="81808" stop="81704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83298" stop="82985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83286" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="80925"/>
              <exon start="79444" stop="79287"/>
              <exon start="78440" stop="78366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83284" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="80925"/>
              <exon start="79444" stop="79287"/>
              <exon start="78440" stop="78387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83284" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="80950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83282" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="80925"/>
              <exon start="79444" stop="79287"/>
              <exon start="78440" stop="78426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83281" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="80925"/>
              <exon start="79444" stop="79380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83280" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="80925"/>
              <exon start="79444" stop="79287"/>
              <exon start="78440" stop="78362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83280" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="80925"/>
              <exon start="79444" stop="79287"/>
              <exon start="78440" stop="78366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83279" stop="82985"/>
              <exon start="81808" stop="81713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279335" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83278" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="81005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83277" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="80932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83275" stop="82985"/>
              <exon start="81808" stop="81679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83274" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="80995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83271" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="80937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83271" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="80994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83271" stop="82985"/>
              <exon start="81808" stop="81679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83270" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="81083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83268" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="80925"/>
              <exon start="79444" stop="79304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83225" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="80932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83225" stop="82985"/>
              <exon start="81808" stop="81679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83224" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="80925"/>
              <exon start="79444" stop="79367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83224" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="80925"/>
              <exon start="79444" stop="79367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83195" stop="82985"/>
              <exon start="81808" stop="81679"/>
              <exon start="81119" stop="80925"/>
              <exon start="79444" stop="79287"/>
              <exon start="78440" stop="78367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83195" stop="82985"/>
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              <exon start="79444" stop="79311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83195" stop="82985"/>
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              <exon start="81119" stop="80925"/>
              <exon start="79444" stop="79332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452500" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83174" stop="82985"/>
              <exon start="81808" stop="81679"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81806" stop="81679"/>
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              <exon start="78163" stop="78098"/>
              <exon start="77907" stop="77845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81776" stop="81679"/>
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              <exon start="79444" stop="79304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81775" stop="81679"/>
              <exon start="81119" stop="80925"/>
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              <exon start="78163" stop="78098"/>
              <exon start="77907" stop="77884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81753" stop="81679"/>
              <exon start="81119" stop="80925"/>
              <exon start="79444" stop="79287"/>
              <exon start="78440" stop="78350"/>
              <exon start="78163" stop="78159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81753" stop="81679"/>
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              <exon start="78440" stop="78373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81753" stop="81679"/>
              <exon start="81119" stop="80925"/>
              <exon start="79444" stop="79372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81721" stop="81679"/>
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              <exon start="78440" stop="78350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81044" stop="80925"/>
              <exon start="79444" stop="79287"/>
              <exon start="78440" stop="78350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80983" stop="80925"/>
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              <exon start="77636" stop="77597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619679" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78366" stop="78350"/>
              <exon start="78163" stop="78098"/>
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              <exon start="77437" stop="77369"/>
              <exon start="76904" stop="76697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255943" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77879" stop="77825"/>
              <exon start="77636" stop="77573"/>
              <exon start="77437" stop="77369"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77594" stop="77573"/>
              <exon start="77437" stop="77369"/>
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              <exon start="76455" stop="76447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215366" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGTGGAGAGTGAAAAGGGTCCCAATAGCAGCATACAAGAGAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG : TGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG : ATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAG : GCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAG : ATACTTCAAGGGCCCTGAACTTCTAGTTGACTTGCAAGACTATGACTATTCTTTGGACATGTGGAGCCTTGGCTGCATGTTTGCAGGAATG : ATTTTCCGCAAGGAACCTTTCTTTTATGGCCATGATAATCAGGATCAGCTCGTCAAAATTGCAAAG : GTACTTGGGACAGATGAGTTGAATGCGTACTTGCACAAGTATCAACTAGAGCTTGATCCTCAGCTAGAGGCTATGGTTGGGAG : ACACAGTAGGAAGCCGTGGTCCAAATTTATTAATGCAGACAATCAGCATCTAGTGTCACCGGAG : GCTATAGATTATCTTGACAAGCTTCTCCGTTACGATCATCAGACTAGACTTACGGCAAAAGAAGCAATG : GCCCATCCATATTTCGGGCAAGTGAGGGCTGCTGAAACTAGCAGAATGAGGACACAGTAGCTTTCTTGTCTTGCTGTTAATGGGAAGAAAAAAAACTGTGTAATGTACCTTGTGTATCCATTTAAGTGACATTCGTGAGAACTATGTGGATTTGAACTTGAGCAGACATCTGAATTCAGGAATTACAGATCTTCATCATTGAACATTTCAAGAGAAATA : AAGAATGAA</gDNA_template>
            <first_frame> L  W  R  V  K  R  V  P  I  A  A  Y  K  R  E  Q  K  A  F  P  I  Y  G  F  F  L  K  M  V  C  E  *  S  S  V  I  A  L  A  V  A  S  N  R  S  G  A  Q  F  L  R  C  I  Y  P  A  C  V  F  F  V  V  P  F  P  K  S  D  T  F  I  N  N  S  S  V  S  D  F  R  I  N  H  V  Q  S  S  S  I  H  R  Y  Q  C  A  S  S  *  G  I  L  G  L  R  I  A  N  C  S  M  G  :  *  S  G  *  L  *  G  C  S  K  S  W  K  R  K  I  Q  *  S  F  *  R  Y  K  C  *  Q  Q  G  E  V  H  N  Q  D  P  E  T  C  *  E  E  K   : D  Q  K  R  D  K  D  I  A  K  S  L  W  W  T  K  Y  C  Q  T  P  *  Y  R  Q  R  S  A  F  K  N  S  K  L  D  F  *  V  R  E  Q  H  R  F  Q  G  F  V  P  N  A  N  R  L  *  H  T  V  L  H  I  *  A  S  Q   : G  T  R  L  L  P  F  T  G  N  N  A  Q  G  C  Q  T  S  *  R  Y  D  R  P  *  T  A  E  A  S  L  D  R  L  G  S  C  R  I  L  P  P  R  E  G  I  *  C  S  C  G  F  K  :  I  L  Q  G  P  *  T  S  S  *  L  A  R  L  *  L  F  F  G  H  V  E  P  W  L  H  V  C  R  N   : D  F  P  Q  G  T  F  L  L  W  P  *  *  S  G  S  A  R  Q  N  C  K   : G  T  W  D  R  *  V  E  C  V  L  A  Q  V  S  T  R  A  *  S  S  A  R  G  Y  G  W  E  :  T  Q  *  E  A  V  V  Q  I  Y  *  C  R  Q  S  A  S  S  V  T  G   : G  Y  R  L  S  *  Q  A  S  P  L  R  S  S  D  *  T  Y  G  K  R  S  N   : G  P  S  I  F  R  A  S  E  G  C  *  N  *  Q  N  E  D  T  V  A  F  L  S  C  C  *  W  E  E  K  K  L  C  N  V  P  C  V  S  I  *  V  T  F  V  R  T  M  W  I  *  T  *  A  D  I  *  I  Q  E  L  Q  I  F  I  I  E  H  F  K  R  N   : K  E  *  </first_frame>
            <second_frame>  C  G  E  *  K  G  S  Q  *  Q  H  T  R  E  S  K  K  L  S  Q  S  M  A  F  S  *  K  W  C  V  S  K  V  V  L  L  L  W  R  L  H  Q  T  E  A  G  P  N  S  F  V  A  S  T  Q  P  A  S  S  L  L  S  L  F  R  N  P  I  P  L  S  I  T  L  Q  S  L  I  S  G  *  T  M  S  K  A  R  V  Y  T  D  I  N  V  L  R  P  R  E  Y  W  D  Y  E  S  L  T  V  Q  W  G :   D  Q  D  D  Y  E  V  V  R  K  V  G  R  G  K  Y  S  E  V  F  E  G  I  N  V  N  S  R  E  K  C  I  I  K  I  L  K  P  V  K  K  K  K  :  I  K  R  E  I  K  I  L  Q  N  L  C  G  G  P  N  I  V  K  L  L  D  I  V  R  D  Q  H  S  K  T  P  S  L  I  F  E  Y  V  N  S  T  D  F  K  V  L  Y  P  T  L  T  D  Y  D  I  R  Y  Y  I  Y  E  L  L  K  :  A  L  D  Y  C  H  S  Q  G  I  M  H  R  D  V  K  P  H  N  V  M  I  D  H  E  L  R  K  L  R  L  I  D  W  G  L  A  E  F  Y  H  P  G  K  E  Y  N  V  R  V  A  S  R :   Y  F  K  G  P  E  L  L  V  D  L  Q  D  Y  D  Y  S  L  D  M  W  S  L  G  C  M  F  A  G  M  :  I  F  R  K  E  P  F  F  Y  G  H  D  N  Q  D  Q  L  V  K  I  A  K  :  V  L  G  T  D  E  L  N  A  Y  L  H  K  Y  Q  L  E  L  D  P  Q  L  E  A  M  V  G  R :   H  S  R  K  P  W  S  K  F  I  N  A  D  N  Q  H  L  V  S  P  E  :  A  I  D  Y  L  D  K  L  L  R  Y  D  H  Q  T  R  L  T  A  K  E  A  M  :  A  H  P  Y  F  G  Q  V  R  A  A  E  T  S  R  M  R  T  Q  *  L  S  C  L  A  V  N  G  K  K  K  N  C  V  M  Y  L  V  Y  P  F  K  *  H  S  *  E  L  C  G  F  E  L  E  Q  T  S  E  F  R  N  Y  R  S  S  S  L  N  I  S  R  E  I  :  K  N  E </second_frame>
            <third_frame>   V  E  S  E  K  G  P  N  S  S  I  Q  E  R  A  K  S  F  P  N  L  W  L  F  P  K  N  G  V  *  V  K  *  C  Y  C  S  G  G  C  I  K  Q  K  R  G  P  I  P  S  L  H  L  P  S  L  R  L  L  C  C  P  F  S  E  I  R  Y  L  Y  Q  *  L  F  S  L  *  F  P  D  K  P  C  P  K  L  E  Y  T  P  I  S  M  C  F  V  L  G  N  I  G  I  T  N  R  *  L  F  N  G   : V  I  R  M  T  M  R  L  F  E  K  L  E  E  E  N  T  V  K  F  L  K  V  *  M  L  T  A  G  R  S  A  *  S  R  S  *  N  L  L  R  R  K  R :   S  K  E  R  *  R  Y  C  K  I  S  V  V  D  Q  I  L  S  N  S  L  I  S  S  E  I  S  I  Q  K  L  Q  A  *  F  L  S  T  *  T  A  Q  I  S  R  F  C  T  Q  R  *  Q  T  M  T  Y  G  T  T  Y  M  S  F  S  R :   H  *  I  I  A  I  H  R  E  *  C  T  G  M  S  N  L  I  T  L  *  *  T  M  N  C  G  S  F  A  *  *  I  G  V  L  P  N  F  T  T  Q  G  R  N  I  M  F  V  W  L  Q   : D  T  S  R  A  L  N  F  *  L  T  C  K  T  M  T  I  L  W  T  C  G  A  L  A  A  C  L  Q  E  * :   F  S  A  R  N  L  S  F  M  A  M  I  I  R  I  S  S  S  K  L  Q  R :   Y  L  G  Q  M  S  *  M  R  T  C  T  S  I  N  *  S  L  I  L  S  *  R  L  W  L  G   : D  T  V  G  S  R  G  P  N  L  L  M  Q  T  I  S  I  *  C  H  R  R :   L  *  I  I  L  T  S  F  S  V  T  I  I  R  L  D  L  R  Q  K  K  Q  W :   P  I  H  I  S  G  K  *  G  L  L  K  L  A  E  *  G  H  S  S  F  L  V  L  L  L  M  G  R  K  K  T  V  *  C  T  L  C  I  H  L  S  D  I  R  E  N  Y  V  D  L  N  L  S  R  H  L  N  S  G  I  T  D  L  H  H  *  T  F  Q  E  K  * :   R  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0203P08.2" strand="-"/>
                <serials PGL_serial="20" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83073" stop="82985"/>
                    <exon start="81808" stop="81679"/>
                    <exon start="81119" stop="80925"/>
                    <exon start="79444" stop="79287"/>
                    <exon start="78440" stop="78350"/>
                    <exon start="78163" stop="78098"/>
                    <exon start="77907" stop="77825"/>
                    <exon start="77636" stop="77573"/>
                    <exon start="77437" stop="77369"/>
                    <exon start="76904" stop="76845"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1002</number_coding_nucleotides>
                  <number_encoded_amino_acids>334</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMSKARVYTDINVLRPREYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNSREKCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNQDQLVKIAKVLGTDELNAYLHKYQLELDPQLEAMVGRHSRKPWSKFINADNQHLVSPEAIDYLDKLLRYDHQTRLTAKEAMAHPYFGQVRAAETSRMRTQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="81202" e_stop="80925"/>
            <exon e_start="79444" e_stop="79287"/>
            <exon e_start="78440" e_stop="78350"/>
            <exon e_start="78163" e_stop="78098"/>
            <exon e_start="77907" e_stop="77825"/>
            <exon e_start="77636" e_stop="77573"/>
            <exon e_start="77437" e_stop="77369"/>
            <exon e_start="76904" e_stop="76509"/>
            <exon e_start="76455" e_stop="76447"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.992" e_score="0.928"/>
          <exon-intron don_prob="0.568" acc_prob="0.911" e_score="1.000"/>
          <exon-intron don_prob="0.930" acc_prob="0.941" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.625" e_score="1.000"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="81202" e_stop="80925" e_length="278"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.992">
            <gDNA_intron_boundary i_start="80924" i_stop="79445" i_length="1480"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="79444" e_stop="79287" e_length="158"/>
          </exon>
          <intron i_serial="2" don_prob="0.568" acc_prob="0.911">
            <gDNA_intron_boundary i_start="79286" i_stop="78441" i_length="846"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="78440" e_stop="78350" e_length="91"/>
          </exon>
          <intron i_serial="3" don_prob="0.930" acc_prob="0.941">
            <gDNA_intron_boundary i_start="78349" i_stop="78164" i_length="186"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="78163" e_stop="78098" e_length="66"/>
          </exon>
          <intron i_serial="4" don_prob="0.987" acc_prob="0.992">
            <gDNA_intron_boundary i_start="78097" i_stop="77908" i_length="190"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="77907" e_stop="77825" e_length="83"/>
          </exon>
          <intron i_serial="5" don_prob="0.900" acc_prob="0.917">
            <gDNA_intron_boundary i_start="77824" i_stop="77637" i_length="188"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="77636" e_stop="77573" e_length="64"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="77572" i_stop="77438" i_length="135"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="77437" e_stop="77369" e_length="69"/>
          </exon>
          <intron i_serial="7" don_prob="0.992" acc_prob="0.967">
            <gDNA_intron_boundary i_start="77368" i_stop="76905" i_length="464"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="76904" e_stop="76509" e_length="396"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.625">
            <gDNA_intron_boundary i_start="76508" i_stop="76456" i_length="53"/>
          </intron>
          <exon e_serial="9" e_score="0.667">
            <gDNA_exon_boundary e_start="76455" e_stop="76447" e_length="9"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81202" stop="80925"/>
              <exon start="79444" stop="79287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604902" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81044" stop="80925"/>
              <exon start="79444" stop="79287"/>
              <exon start="78440" stop="78350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80983" stop="80925"/>
              <exon start="79444" stop="79287"/>
              <exon start="78440" stop="78350"/>
              <exon start="78163" stop="78098"/>
              <exon start="77907" stop="77825"/>
              <exon start="77636" stop="77597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619679" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79440" stop="79287"/>
              <exon start="78440" stop="78350"/>
              <exon start="78163" stop="78098"/>
              <exon start="77907" stop="77825"/>
              <exon start="77636" stop="77573"/>
              <exon start="77437" stop="77369"/>
              <exon start="76904" stop="76675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79367" stop="79287"/>
              <exon start="78440" stop="78350"/>
              <exon start="78163" stop="78098"/>
              <exon start="77907" stop="77825"/>
              <exon start="77636" stop="77573"/>
              <exon start="77437" stop="77369"/>
              <exon start="76904" stop="76682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78366" stop="78350"/>
              <exon start="78163" stop="78098"/>
              <exon start="77907" stop="77825"/>
              <exon start="77636" stop="77573"/>
              <exon start="77437" stop="77369"/>
              <exon start="76904" stop="76697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255943" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77879" stop="77825"/>
              <exon start="77636" stop="77573"/>
              <exon start="77437" stop="77369"/>
              <exon start="76904" stop="76686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77593" stop="77573"/>
              <exon start="77437" stop="77369"/>
              <exon start="76904" stop="76509"/>
              <exon start="76455" stop="76447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77593" stop="77573"/>
              <exon start="77437" stop="77369"/>
              <exon start="76904" stop="76509"/>
              <exon start="76455" stop="76447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77593" stop="77573"/>
              <exon start="77437" stop="77369"/>
              <exon start="76904" stop="76621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77593" stop="77573"/>
              <exon start="77437" stop="77369"/>
              <exon start="76904" stop="76621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420271" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77593" stop="77573"/>
              <exon start="77437" stop="77369"/>
              <exon start="76904" stop="76621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77592" stop="77573"/>
              <exon start="77437" stop="77369"/>
              <exon start="76904" stop="76509"/>
              <exon start="76455" stop="76447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270959" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAG : GCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAG : ATACTTCAAGGGCCCTGAACTTCTAGTTGACTTGCAAGACTATGACTATTCTTTGGACATGTGGAGCCTTGGCTGCATGTTTGCAGGAATG : ATTTTCCGCAAGGAACCTTTCTTTTATGGCCATGATAATCAGGATCAGCTCGTCAAAATTGCAAAG : GTACTTGGGACAGATGAGTTGAATGCGTACTTGCACAAGTATCAACTAGAGCTTGATCCTCAGCTAGAGGCTATGGTTGGGAG : ACACAGTAGGAAGCCGTGGTCCAAATTTATTAATGCAGACAATCAGCATCTAGTGTCACCGGAG : GCTATAGATTATCTTGACAAGCTTCTCCGTTACGATCATCAGACTAGACTTACGGCAAAAGAAGCAATG : GCCCATCCATATTTCGGGCAAGTGAGGGCTGCTGAAACTAGCAGAATGAGGACACAGTAGCTTTCTTGTCTTGCTGTTAATGGGAAGAAAAAAAACTGTGTAATGTACCTTGTGTATCCATTTAAGTGACATTCGTGAGAACTATGTGGATTTGAACTTGAGCAGACATCTGAATTCAGGAATTACAGATCTTCATCATTGAACATTTCAAGAGAAATAGTGTTTTTTAGATTTCCTGATCGTGACCTTGATTGCAAATGGAAGTGACTTGCTGGGCGTCAAAAGTCACCCCACCCCCCCTTCCCCAAAGATACTATCTCCCTAGATGTGAACAAAAGCAGATTTTTGAAAATTAGTTCACTTTGTATATTAGTGCACTGGATTTTTCTGCATTCA : AAGAATGAA</gDNA_template>
            <first_frame> F  S  L  *  Y  C  A  L  Y  G  K  K  E  K  N  I  H  A  F  D  L  T  L  A  V  S  C  R  S  K  E  R  *  R  Y  C  K  I  S  V  V  D  Q  I  L  S  N  S  L  I  S  S  E  I  S  I  Q  K  L  Q  A  *  F  L  S  T  *  T  A  Q  I  S  R  F  C  T  Q  R  *  Q  T  M  T  Y  G  T  T  Y  M  S  F  S  R :   H  *  I  I  A  I  H  R  E  *  C  T  G  M  S  N  L  I  T  L  *  *  T  M  N  C  G  S  F  A  *  *  I  G  V  L  P  N  F  T  T  Q  G  R  N  I  M  F  V  W  L  Q   : D  T  S  R  A  L  N  F  *  L  T  C  K  T  M  T  I  L  W  T  C  G  A  L  A  A  C  L  Q  E  * :   F  S  A  R  N  L  S  F  M  A  M  I  I  R  I  S  S  S  K  L  Q  R :   Y  L  G  Q  M  S  *  M  R  T  C  T  S  I  N  *  S  L  I  L  S  *  R  L  W  L  G   : D  T  V  G  S  R  G  P  N  L  L  M  Q  T  I  S  I  *  C  H  R  R :   L  *  I  I  L  T  S  F  S  V  T  I  I  R  L  D  L  R  Q  K  K  Q  W :   P  I  H  I  S  G  K  *  G  L  L  K  L  A  E  *  G  H  S  S  F  L  V  L  L  L  M  G  R  K  K  T  V  *  C  T  L  C  I  H  L  S  D  I  R  E  N  Y  V  D  L  N  L  S  R  H  L  N  S  G  I  T  D  L  H  H  *  T  F  Q  E  K  *  C  F  L  D  F  L  I  V  T  L  I  A  N  G  S  D  L  L  G  V  K  S  H  P  T  P  P  S  P  K  I  L  S  P  *  M  *  T  K  A  D  F  *  K  L  V  H  F  V  Y  *  C  T  G  F  F  C  I  Q :   R  M   </first_frame>
            <second_frame>  L  V  C  N  I  V  L  Y  T  E  K  K  K  R  I  Y  M  L  L  T  *  H  *  R  Y  R  V  D  Q  K  R  D  K  D  I  A  K  S  L  W  W  T  K  Y  C  Q  T  P  *  Y  R  Q  R  S  A  F  K  N  S  K  L  D  F  *  V  R  E  Q  H  R  F  Q  G  F  V  P  N  A  N  R  L  *  H  T  V  L  H  I  *  A  S  Q   : G  T  R  L  L  P  F  T  G  N  N  A  Q  G  C  Q  T  S  *  R  Y  D  R  P  *  T  A  E  A  S  L  D  R  L  G  S  C  R  I  L  P  P  R  E  G  I  *  C  S  C  G  F  K  :  I  L  Q  G  P  *  T  S  S  *  L  A  R  L  *  L  F  F  G  H  V  E  P  W  L  H  V  C  R  N   : D  F  P  Q  G  T  F  L  L  W  P  *  *  S  G  S  A  R  Q  N  C  K   : G  T  W  D  R  *  V  E  C  V  L  A  Q  V  S  T  R  A  *  S  S  A  R  G  Y  G  W  E  :  T  Q  *  E  A  V  V  Q  I  Y  *  C  R  Q  S  A  S  S  V  T  G   : G  Y  R  L  S  *  Q  A  S  P  L  R  S  S  D  *  T  Y  G  K  R  S  N   : G  P  S  I  F  R  A  S  E  G  C  *  N  *  Q  N  E  D  T  V  A  F  L  S  C  C  *  W  E  E  K  K  L  C  N  V  P  C  V  S  I  *  V  T  F  V  R  T  M  W  I  *  T  *  A  D  I  *  I  Q  E  L  Q  I  F  I  I  E  H  F  K  R  N  S  V  F  *  I  S  *  S  *  P  *  L  Q  M  E  V  T  C  W  A  S  K  V  T  P  P  P  L  P  Q  R  Y  Y  L  P  R  C  E  Q  K  Q  I  F  E  N  *  F  T  L  Y  I  S  A  L  D  F  S  A  F   : K  E  *  </second_frame>
            <third_frame>   *  F  V  I  L  C  F  I  R  K  K  R  K  E  Y  T  C  F  *  L  D  I  S  G  I  V  *  I  K  R  E  I  K  I  L  Q  N  L  C  G  G  P  N  I  V  K  L  L  D  I  V  R  D  Q  H  S  K  T  P  S  L  I  F  E  Y  V  N  S  T  D  F  K  V  L  Y  P  T  L  T  D  Y  D  I  R  Y  Y  I  Y  E  L  L  K  :  A  L  D  Y  C  H  S  Q  G  I  M  H  R  D  V  K  P  H  N  V  M  I  D  H  E  L  R  K  L  R  L  I  D  W  G  L  A  E  F  Y  H  P  G  K  E  Y  N  V  R  V  A  S  R :   Y  F  K  G  P  E  L  L  V  D  L  Q  D  Y  D  Y  S  L  D  M  W  S  L  G  C  M  F  A  G  M  :  I  F  R  K  E  P  F  F  Y  G  H  D  N  Q  D  Q  L  V  K  I  A  K  :  V  L  G  T  D  E  L  N  A  Y  L  H  K  Y  Q  L  E  L  D  P  Q  L  E  A  M  V  G  R :   H  S  R  K  P  W  S  K  F  I  N  A  D  N  Q  H  L  V  S  P  E  :  A  I  D  Y  L  D  K  L  L  R  Y  D  H  Q  T  R  L  T  A  K  E  A  M  :  A  H  P  Y  F  G  Q  V  R  A  A  E  T  S  R  M  R  T  Q  *  L  S  C  L  A  V  N  G  K  K  K  N  C  V  M  Y  L  V  Y  P  F  K  *  H  S  *  E  L  C  G  F  E  L  E  Q  T  S  E  F  R  N  Y  R  S  S  S  L  N  I  S  R  E  I  V  F  F  R  F  P  D  R  D  L  D  C  K  W  K  *  L  A  G  R  Q  K  S  P  H  P  P  F  P  K  D  T  I  S  L  D  V  N  K  S  R  F  L  K  I  S  S  L  C  I  L  V  H  W  I  F  L  H  S  :  K  N  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0203P08.2" strand="-"/>
                <serials PGL_serial="20" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81119" stop="80925"/>
                    <exon start="79444" stop="79287"/>
                    <exon start="78440" stop="78350"/>
                    <exon start="78163" stop="78098"/>
                    <exon start="77907" stop="77825"/>
                    <exon start="77636" stop="77573"/>
                    <exon start="77437" stop="77369"/>
                    <exon start="76904" stop="76845"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>783</number_coding_nucleotides>
                  <number_encoded_amino_acids>261</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNQDQLVKIAKVLGTDELNAYLHKYQLELDPQLEAMVGRHSRKPWSKFINADNQHLVSPEAIDYLDKLLRYDHQTRLTAKEAMAHPYFGQVRAAETSRMRTQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="83298" e_stop="82985"/>
            <exon e_start="81801" e_stop="81679"/>
            <exon e_start="81132" e_stop="80841"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.941" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.361" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="83298" e_stop="82985" e_length="314"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.941">
            <gDNA_intron_boundary i_start="82984" i_stop="81802" i_length="1183"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81801" e_stop="81679" e_length="123"/>
          </exon>
          <intron i_serial="2" don_prob="0.975" acc_prob="0.361">
            <gDNA_intron_boundary i_start="81678" i_stop="81133" i_length="546"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="81132" e_stop="80841" e_length="292"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83298" stop="82985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83294" stop="82985"/>
              <exon start="81801" stop="81679"/>
              <exon start="81132" stop="80841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334421" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCCAATAGCAGCATACAAGAGAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG : GATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG : CGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAGGTAAGATGATAAACACATCAGATGGCAGTCAATATGGCTTTTATGTATTCATGCTCCCTCTCCCCTGATTCTTTTTTTTTTTTT</gDNA_template>
            <first_frame> S  Q  *  Q  H  T  R  E  S  K  K  L  S  Q  S  M  A  F  S  *  K  W  C  V  S  K  V  V  L  L  L  W  R  L  H  Q  T  E  A  G  P  N  S  F  V  A  S  T  Q  P  A  S  S  L  L  S  L  F  R  N  P  I  P  L  S  I  T  L  Q  S  L  I  S  G  *  T  M  S  K  A  R  V  Y  T  D  I  N  V  L  R  P  R  E  Y  W  D  Y  E  S  L  T  V  Q  W  G :   M  T  M  R  L  F  E  K  L  E  E  E  N  T  V  K  F  L  K  V  *  M  L  T  A  G  R  S  A  *  S  R  S  *  N  L  L  R  R  K  S :   G  I  V  *  I  K  R  E  I  K  I  L  Q  N  L  C  G  G  P  N  I  V  K  L  L  D  I  V  R  D  Q  H  S  K  T  P  S  L  I  F  E  Y  V  N  S  T  D  F  K  V  L  Y  P  T  L  T  D  Y  D  I  R  Y  Y  I  Y  E  L  L  K  V  R  *  *  T  H  Q  M  A  V  N  M  A  F  M  Y  S  C  S  L  S  P  D  S  F  F  F  F </first_frame>
            <second_frame>  P  N  S  S  I  Q  E  R  A  K  S  F  P  N  L  W  L  F  P  K  N  G  V  *  V  K  *  C  Y  C  S  G  G  C  I  K  Q  K  R  G  P  I  P  S  L  H  L  P  S  L  R  L  L  C  C  P  F  S  E  I  R  Y  L  Y  Q  *  L  F  S  L  *  F  P  D  K  P  C  P  K  L  E  Y  T  P  I  S  M  C  F  V  L  G  N  I  G  I  T  N  R  *  L  F  N  G   : G  *  L  *  G  C  S  K  S  W  K  R  K  I  Q  *  S  F  *  R  Y  K  C  *  Q  Q  G  E  V  H  N  Q  D  P  E  T  C  *  E  E  K   : A  V  S  C  R  S  K  E  R  *  R  Y  C  K  I  S  V  V  D  Q  I  L  S  N  S  L  I  S  S  E  I  S  I  Q  K  L  Q  A  *  F  L  S  T  *  T  A  Q  I  S  R  F  C  T  Q  R  *  Q  T  M  T  Y  G  T  T  Y  M  S  F  S  R  *  D  D  K  H  I  R  W  Q  S  I  W  L  L  C  I  H  A  P  S  P  L  I  L  F  F  F   </second_frame>
            <third_frame>   P  I  A  A  Y  K  R  E  Q  K  A  F  P  I  Y  G  F  F  L  K  M  V  C  E  *  S  S  V  I  A  L  A  V  A  S  N  R  S  G  A  Q  F  L  R  C  I  Y  P  A  C  V  F  F  V  V  P  F  P  K  S  D  T  F  I  N  N  S  S  V  S  D  F  R  I  N  H  V  Q  S  S  S  I  H  R  Y  Q  C  A  S  S  *  G  I  L  G  L  R  I  A  N  C  S  M  G  :  D  D  Y  E  V  V  R  K  V  G  R  G  K  Y  S  E  V  F  E  G  I  N  V  N  S  R  E  K  C  I  I  K  I  L  K  P  V  K  K  K  K  :  R  Y  R  V  D  Q  K  R  D  K  D  I  A  K  S  L  W  W  T  K  Y  C  Q  T  P  *  Y  R  Q  R  S  A  F  K  N  S  K  L  D  F  *  V  R  E  Q  H  R  F  Q  G  F  V  P  N  A  N  R  L  *  H  T  V  L  H  I  *  A  S  Q  G  K  M  I  N  T  S  D  G  S  Q  Y  G  F  Y  V  F  M  L  P  L  P  *  F  F  F  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0203P08.2" strand="-"/>
                <serials PGL_serial="20" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83023" stop="82985"/>
                    <exon start="81801" stop="81679"/>
                    <exon start="81132" stop="81055"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GILGLRIANCSMGDDYEVVRKVGRGKYSEVFEGINVNSREKCIIKILKPVKKKKRYRVDQKRDKDIAKSLWWTKYCQTP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0203P08.2" strand="-"/>
                <serials PGL_serial="20" AGS_serial="5" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81119" stop="80916"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKVR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0203P08.2" strand="-"/>
                <serials PGL_serial="20" AGS_serial="5" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83221" stop="83024"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSVIALAVASNRSGAQFLRCIYPACVFFVVPFPKSDTFINNSSVSDFRINHVQSSSIHRYQCASS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="90244" PGL_stop="90635"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90244" e_stop="90635"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="90244" e_stop="90635" e_length="392"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90244" stop="90635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314538" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATAGGTTTTGCTAATTCAACCAAGAAAATAGTTTAATTATGTAGGAAAGATCTTAATATGATGTGAAAATGACATTCCTGGAGGAGCCTATTGACGTCCTACACCAGCTATTCATTATTGACAATTGCCGTAGCTATCATTTGTCAGACAAATTTCAGTGGATATGCTTTCAGTCTGAGACTATTACCTAGCCAGGTCTAGGGTCCAATTAATCCGTACTAGCTTTGAACTAACATTGCAAAACTTGTCTTCACCCTTCTACTGGTGGATTTGGGTTATAGGGCAGGTGCGATCACACCTACTTTGGATACAATTGGGAACAATAACAATTAAAGTATCAAGAAACGAAATTCGATATCAGCTGGTTTGATATGTACCCCGATGGTTTTTTG</gDNA_template>
            <first_frame> I  G  F  A  N  S  T  K  K  I  V  *  L  C  R  K  D  L  N  M  M  *  K  *  H  S  W  R  S  L  L  T  S  Y  T  S  Y  S  L  L  T  I  A  V  A  I  I  C  Q  T  N  F  S  G  Y  A  F  S  L  R  L  L  P  S  Q  V  *  G  P  I  N  P  Y  *  L  *  T  N  I  A  K  L  V  F  T  L  L  L  V  D  L  G  Y  R  A  G  A  I  T  P  T  L  D  T  I  G  N  N  N  N  *  S  I  K  K  R  N  S  I  S  A  G  L  I  C  T  P  M  V  F   </first_frame>
            <second_frame>  *  V  L  L  I  Q  P  R  K  *  F  N  Y  V  G  K  I  L  I  *  C  E  N  D  I  P  G  G  A  Y  *  R  P  T  P  A  I  H  Y  *  Q  L  P  *  L  S  F  V  R  Q  I  S  V  D  M  L  S  V  *  D  Y  Y  L  A  R  S  R  V  Q  L  I  R  T  S  F  E  L  T  L  Q  N  L  S  S  P  F  Y  W  W  I  W  V  I  G  Q  V  R  S  H  L  L  W  I  Q  L  G  T  I  T  I  K  V  S  R  N  E  I  R  Y  Q  L  V  *  Y  V  P  R  W  F  F  </second_frame>
            <third_frame>   R  F  C  *  F  N  Q  E  N  S  L  I  M  *  E  R  S  *  Y  D  V  K  M  T  F  L  E  E  P  I  D  V  L  H  Q  L  F  I  I  D  N  C  R  S  Y  H  L  S  D  K  F  Q  W  I  C  F  Q  S  E  T  I  T  *  P  G  L  G  S  N  *  S  V  L  A  L  N  *  H  C  K  T  C  L  H  P  S  T  G  G  F  G  L  *  G  R  C  D  H  T  Y  F  G  Y  N  W  E  Q  *  Q  L  K  Y  Q  E  T  K  F  D  I  S  W  F  D  M  Y  P  D  G  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0203P08.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="+" PGL_start="91086" PGL_stop="93025"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91086" e_stop="91311"/>
            <exon e_start="91431" e_stop="91500"/>
            <exon e_start="91880" e_stop="92494"/>
            <exon e_start="92576" e_stop="93025"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.753" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="91086" e_stop="91311" e_length="226"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="91312" i_stop="91430" i_length="119"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="91431" e_stop="91500" e_length="70"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.965">
            <gDNA_intron_boundary i_start="91501" i_stop="91879" i_length="379"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="91880" e_stop="92494" e_length="615"/>
          </exon>
          <intron i_serial="3" don_prob="0.753" acc_prob="1.000">
            <gDNA_intron_boundary i_start="92495" i_stop="92575" i_length="81"/>
          </intron>
          <exon e_serial="4" e_score="0.993">
            <gDNA_exon_boundary e_start="92576" e_stop="93025" e_length="450"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91086" stop="91311"/>
              <exon start="91431" stop="91500"/>
              <exon start="91880" stop="92103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91475" stop="91500"/>
              <exon start="91880" stop="92360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92042" stop="92494"/>
              <exon start="92576" stop="92628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92243" stop="92494"/>
              <exon start="92576" stop="92977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92243" stop="92494"/>
              <exon start="92576" stop="92903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92367" stop="92494"/>
              <exon start="92576" stop="93025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275552" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAACTTACAGAAGCAAAGAAAATGGCAACAAACATGTCTTTCTATTGTTTGCTTCATTAGGAAATAGTTTAAGGGAAAACGAATGAACATGGTTAAGGCCCGTAAAAGACTCGATCACCCATGGTGGATGACATGTTGATCTTGATAATGAACAACCTTCTACTCTAAACAGTATGTCCACTAAAAAGGAGCTTCTTTTCTCTGCTACAAAGAGGACCTCTCAATG : GATTTTCTCCCAGGAGATCCCAAGTGATGTGACTGTAAATGCCGCAGGAATCTCCTTTACACTACACAAG : TTCCCATTAGTTTCAAAGAGTGGATACATAAGGAAGTTGGTCTCGGAATCCAATGATGCTGACGTTTCTACGATCGAAATCCCTGATATACCTGGTGGAGGAGAGGCATTTGAATTTGCAGCAAAGTTTTGTTATGGAATAAATTTTGAGATAAGCACAAGAAACATTGCCTTGCTGAGATGTGCAGCAGAATATCTTGAGATGACAGAAGACTATGCAGTTGCAAATTTGGTGGGAAGAACTGAGGACTACTTTAGTGAAGTAGGAATTGAGAGCCTTCATAGTGCTGTTACAATTTTGCATTCATCAGAAAATCTTATTCCCATTTCAGAGAAAGTGAAATTGGTGAGCCGCTGCATTGACACAATTGCATATATAGCCTGTAAGGATAACCAATTCTCCACATCAGGTTGAGCAGAAGCTGGTATCTATGGATTGACTTCCTCCATGTTTTCGAACCCGAAGTCTATAGTTAACTGGTGGTCGGAGGATTTAACCGTCCTTAGAATTGATTTTTTCCAAAGGGTTCTGATTGCAATGATGGGAAGGGGATTCAAGCAGTATGCACTTGGACCAATATTAATGCTCTATGCACAGAAGTCTCTTCGTTGTTTG : GAAATATTTGGAAAGGGAAGGAAAAAGATTGAACCAAAACAAGAACATGAAAAAAGGGTTGTTGTAGAAACCATCGTTGGTCTTCTGCCAAGGGAGAAAAATGCATTATCCGTTAGCTTTTGTCAATGCTTCTCCGAGCTGCAATATATCTGCAGACCACGATGGCTGGCAGGCTCGACTTGGAGAAGAGGATGGATTGCAGCTTGGACAGGCTGTATTGGATGTATCTGTTAATTCCTTCATATTCCTTCAGAGGGGACACTTTGTTTGATGTTGAAATCATGCAGCTTATTGTGATGAATTTCCTTGCCTATGATATGGAGGAAAATCATTGGGAGATGAAGAGTATAATGAGTCTCATTCATTAAGAGACATGGAGCGAGTTGGGGAACTTATGGAAAATTACCTTGCTAAAATAGCTTCTGACCGTAATCTATCCATCACAAGCTT</gDNA_template>
            <first_frame> E  L  T  E  A  K  K  M  A  T  N  M  S  F  Y  C  L  L  H  *  E  I  V  *  G  K  T  N  E  H  G  *  G  P  *  K  T  R  S  P  M  V  D  D  M  L  I  L  I  M  N  N  L  L  L  *  T  V  C  P  L  K  R  S  F  F  S  L  L  Q  R  G  P  L  N   : G  F  S  P  R  R  S  Q  V  M  *  L  *  M  P  Q  E  S  P  L  H  Y  T  S :   S  H  *  F  Q  R  V  D  T  *  G  S  W  S  R  N  P  M  M  L  T  F  L  R  S  K  S  L  I  Y  L  V  E  E  R  H  L  N  L  Q  Q  S  F  V  M  E  *  I  L  R  *  A  Q  E  T  L  P  C  *  D  V  Q  Q  N  I  L  R  *  Q  K  T  M  Q  L  Q  I  W  W  E  E  L  R  T  T  L  V  K  *  E  L  R  A  F  I  V  L  L  Q  F  C  I  H  Q  K  I  L  F  P  F  Q  R  K  *  N  W  *  A  A  A  L  T  Q  L  H  I  *  P  V  R  I  T  N  S  P  H  Q  V  E  Q  K  L  V  S  M  D  *  L  P  P  C  F  R  T  R  S  L  *  L  T  G  G  R  R  I  *  P  S  L  E  L  I  F  S  K  G  F  *  L  Q  *  W  E  G  D  S  S  S  M  H  L  D  Q  Y  *  C  S  M  H  R  S  L  F  V  V  W :   K  Y  L  E  R  E  G  K  R  L  N  Q  N  K  N  M  K  K  G  L  L  *  K  P  S  L  V  F  C  Q  G  R  K  M  H  Y  P  L  A  F  V  N  A  S  P  S  C  N  I  S  A  D  H  D  G  W  Q  A  R  L  G  E  E  D  G  L  Q  L  G  Q  A  V  L  D  V  S  V  N  S  F  I  F  L  Q  R  G  H  F  V  *  C  *  N  H  A  A  Y  C  D  E  F  P  C  L  *  Y  G  G  K  S  L  G  D  E  E  Y  N  E  S  H  S  L  R  D  M  E  R  V  G  E  L  M  E  N  Y  L  A  K  I  A  S  D  R  N  L  S  I  T  S   </first_frame>
            <second_frame>  N  L  Q  K  Q  R  K  W  Q  Q  T  C  L  S  I  V  C  F  I  R  K  *  F  K  G  K  R  M  N  M  V  K  A  R  K  R  L  D  H  P  W  W  M  T  C  *  S  *  *  *  T  T  F  Y  S  K  Q  Y  V  H  *  K  G  A  S  F  L  C  Y  K  E  D  L  S  M  :  D  F  L  P  G  D  P  K  *  C  D  C  K  C  R  R  N  L  L  Y  T  T  Q   : V  P  I  S  F  K  E  W  I  H  K  E  V  G  L  G  I  Q  *  C  *  R  F  Y  D  R  N  P  *  Y  T  W  W  R  R  G  I  *  I  C  S  K  V  L  L  W  N  K  F  *  D  K  H  K  K  H  C  L  A  E  M  C  S  R  I  S  *  D  D  R  R  L  C  S  C  K  F  G  G  K  N  *  G  L  L  *  *  S  R  N  *  E  P  S  *  C  C  Y  N  F  A  F  I  R  K  S  Y  S  H  F  R  E  S  E  I  G  E  P  L  H  *  H  N  C  I  Y  S  L  *  G  *  P  I  L  H  I  R  L  S  R  S  W  Y  L  W  I  D  F  L  H  V  F  E  P  E  V  Y  S  *  L  V  V  G  G  F  N  R  P  *  N  *  F  F  P  K  G  S  D  C  N  D  G  K  G  I  Q  A  V  C  T  W  T  N  I  N  A  L  C  T  E  V  S  S  L  F   : G  N  I  W  K  G  K  E  K  D  *  T  K  T  R  T  *  K  K  G  C  C  R  N  H  R  W  S  S  A  K  G  E  K  C  I  I  R  *  L  L  S  M  L  L  R  A  A  I  Y  L  Q  T  T  M  A  G  R  L  D  L  E  K  R  M  D  C  S  L  D  R  L  Y  W  M  Y  L  L  I  P  S  Y  S  F  R  G  D  T  L  F  D  V  E  I  M  Q  L  I  V  M  N  F  L  A  Y  D  M  E  E  N  H  W  E  M  K  S  I  M  S  L  I  H  *  E  T  W  S  E  L  G  N  L  W  K  I  T  L  L  K  *  L  L  T  V  I  Y  P  S  Q  A  </second_frame>
            <third_frame>   T  Y  R  S  K  E  N  G  N  K  H  V  F  L  L  F  A  S  L  G  N  S  L  R  E  N  E  *  T  W  L  R  P  V  K  D  S  I  T  H  G  G  *  H  V  D  L  D  N  E  Q  P  S  T  L  N  S  M  S  T  K  K  E  L  L  F  S  A  T  K  R  T  S  Q  W :   I  F  S  Q  E  I  P  S  D  V  T  V  N  A  A  G  I  S  F  T  L  H  K  :  F  P  L  V  S  K  S  G  Y  I  R  K  L  V  S  E  S  N  D  A  D  V  S  T  I  E  I  P  D  I  P  G  G  G  E  A  F  E  F  A  A  K  F  C  Y  G  I  N  F  E  I  S  T  R  N  I  A  L  L  R  C  A  A  E  Y  L  E  M  T  E  D  Y  A  V  A  N  L  V  G  R  T  E  D  Y  F  S  E  V  G  I  E  S  L  H  S  A  V  T  I  L  H  S  S  E  N  L  I  P  I  S  E  K  V  K  L  V  S  R  C  I  D  T  I  A  Y  I  A  C  K  D  N  Q  F  S  T  S  G  *  A  E  A  G  I  Y  G  L  T  S  S  M  F  S  N  P  K  S  I  V  N  W  W  S  E  D  L  T  V  L  R  I  D  F  F  Q  R  V  L  I  A  M  M  G  R  G  F  K  Q  Y  A  L  G  P  I  L  M  L  Y  A  Q  K  S  L  R  C  L  :  E  I  F  G  K  G  R  K  K  I  E  P  K  Q  E  H  E  K  R  V  V  V  E  T  I  V  G  L  L  P  R  E  K  N  A  L  S  V  S  F  C  Q  C  F  S  E  L  Q  Y  I  C  R  P  R  W  L  A  G  S  T  W  R  R  G  W  I  A  A  W  T  G  C  I  G  C  I  C  *  F  L  H  I  P  S  E  G  T  L  C  L  M  L  K  S  C  S  L  L  *  *  I  S  L  P  M  I  W  R  K  I  I  G  R  *  R  V  *  *  V  S  F  I  K  R  H  G  A  S  W  G  T  Y  G  K  L  P  C  *  N  S  F  *  P  *  S  I  H  H  K  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0203P08.2" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91217" stop="91311"/>
                    <exon start="91431" stop="91500"/>
                    <exon start="91880" stop="92293"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>576</number_coding_nucleotides>
                  <number_encoded_amino_acids>192</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HVDLDNEQPSTLNSMSTKKELLFSATKRTSQWIFSQEIPSDVTVNAAGISFTLHKFPLVSKSGYIRKLVSESNDADVSTIEIPDIPGGGEAFEFAAKFCYGINFEISTRNIALLRCAAEYLEMTEDYAVANLVGRTEDYFSEVGIESLHSAVTILHSSENLIPISEKVKLVSRCIDTIAYIACKDNQFSTSG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0203P08.2" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92294" stop="92494"/>
                    <exon start="92576" stop="92809"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>432</number_coding_nucleotides>
                  <number_encoded_amino_acids>144</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AEAGIYGLTSSMFSNPKSIVNWWSEDLTVLRIDFFQRVLIAMMGRGFKQYALGPILMLYAQKSLRCLEIFGKGRKKIEPKQEHEKRVVVETIVGLLPREKNALSVSFCQCFSELQYICRPRWLAGSTWRRGWIAAWTGCIGCIC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 346 chains have been computed
$ 
$ memory statistics:
$ 433536 bytes spliced alignments in total
$ 188 spliced alignments have been stored
$ 2306 bytes was the average size of a spliced alignment
$ 35976 bytes predicted gene locations in total
$ 22 predicted gene locations have been stored
$ 1635 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 377 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 09:58:18
-->
