<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 09:51:17"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278984" ref_strand="-" ref_description="SGN-E278984 [cLER-2-N19]">
      <seq>tgatcagtccgttgagcaactgggagtcactggagtacttgtcctggatgctcctccaaatggtcctgcaggcaaagcaggtcttctacctactaaacgtgattcctacggaagacttattttaggtgatataatcacatctataaatggaaagaaggtctctaatggcaccgacttgtacagaattcttgaccaatgcaaagttggagaaaaggtaattgtggaagtgctgcgtggggatcagaaagagaagatccctgtacttctggaaccaaagcctgaagaatcgtagttcctcaaatggatagagtatgtgttgatatgcatttcttggcgaacaagcccatattattagtgcatcaattgttgaatggttgtgtatatacaaaacaacgcttaaaactagggtgcaagcaatatagttgggagtctaacactgctgcctaaatatttctactatattagatatcctcaaattgtataaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="20460" stop="18721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20160" g_stop="20082" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20081" i_stop="19882" i_length="200">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19881" g_stop="19747" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="214" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19746" i_stop="19291" i_length="456">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19290" g_stop="19019" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="486" r_length="272" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E278984" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278984" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="20160" e_stop="20082"/>
          <exon e_start="19881" e_stop="19747"/>
          <exon e_start="19290" e_stop="19019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCAGTCCGTTGAGCAACTGGGAGTCACTGGAGTACTTGTCCTGGATGCTCCTCCAAATGGTCCTGCAGGCAAAGCAGTATGTTATTTCCTGTATCTTTTCTCTTGACATTCCTTACCAGTTTCTCCTTCCTTTTATACACTATAATTATCAGCAGTTTCCACCAGTTATATCACCCTACCGATTTTCTTTCATGTGATTGTTTGTACAAGCCAGTATAAATTTGTGACCGACATGATGAGAAACCGAATATGAGATGTTAAATCTTGTAAATGCAGGGTCTTCTACCTACTAAACGTGATTCCTACGGAAGACTTATTTTAGGTGATATAATCACATCTATAAATGGAAAGAAGGTCTCTAATGGCACCGACTTGTACAGAATTCTTGACCAATGCAAAGTTGGAGAAAAGGTAATTCTCATACATCTATTACAAAAATTTTCATCTATATTGTTGGCTTAGAATTCATATGGAGTACAGAGAATTTCTCAAGCATACACCAACTCGCAACGCTTTTAGATAAACATCATATTTGGAATTGCACCTTTGCTTGCATGAAACTTTATTAGTTGATCTTCCTTTTTATTTCTGCAACTTTATTTAAGTGGTCTTTAAGAATATGAATAGTTAGGTATTTGACCTTGATATTGACAGTAGTAATGTTTCTCTTATCAATCTTGCTAAATATTTTGTTTTCCCCAAGTTTGTATACTTGCACATACTTTTTCATTAACATTTCCATTAGCTTTTCTCCTTCCAGTAATTATGAGATAATTGGAAAGTATTCAGTATGAAAAGGTAGTGAAACTTGGAACTACATTTGTGGAAATTGTAGAAAGCTAAGCTTACGGCTGATGTTATGAACAGGTAATTGTGGAAGTGCTGCGTGGGGATCAGAAAGAGAAGATCCCTGTACTTCTGGAACCAAAGCCTGAAGAATCGTAGTTCCTCAAATGGATAGAGTATGTGTTGATATGCATTTCTTGGCGAACAAGCCCATATTATTAGTGCATCAATTGTTGAATGGTTGTGTATATACAAAACAACGCTTAAAACTAGGGTGCAAGCAATATAGTTGGGAGTCTAACACTGCTGCCTAAATATTTCTACTATATTAGATATCCTCAAATTGTATAATG</genome_strand>
        <mrna_strand>TGATCAGTCCGTTGAGCAACTGGGAGTCACTGGAGTACTTGTCCTGGATGCTCCTCCAAATGGTCCTGCAGGCAAAGCA........................................................................................................................................................................................................GGTCTTCTACCTACTAAACGTGATTCCTACGGAAGACTTATTTTAGGTGATATAATCACATCTATAAATGGAAAGAAGGTCTCTAATGGCACCGACTTGTACAGAATTCTTGACCAATGCAAAGTTGGAGAAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATTGTGGAAGTGCTGCGTGGGGATCAGAAAGAGAAGATCCCTGTACTTCTGGAACCAAAGCCTGAAGAATCGTAGTTCCTCAAATGGATAGAGTATGTGTTGATATGCATTTCTTGGCGAACAAGCCCATATTATTAGTGCATCAATTGTTGAATGGTTGTGTATATACAAAACAACGCTTAAAACTAGGGTGCAAGCAATATAGTTGGGAGTCTAACACTGCTGCCTAAATATTTCTACTATATTAGATATCCTCAAATTGTATAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E418572" ref_strand="-" ref_description="SGN-E418572 [STM-27-H10]">
      <seq>tggaaatccatttggacttgatcatacactcaccactggtgttatcagtggccttaggagagaaatcaattctgcagctactggccgcccaatccaagatgttattcagacagatgcagcaatcaatcctggtaacagtggagggccacttctagatagttctggaaatcttattggaataaatactgctatatattctccttccggtgcatcatcaggtgttggattttcaattccagttgatactgtcagtggcattgttgatcaattggtgcagtttgggaaagtcacaaggccaattttgggcataaagtttgcacctgatcagtccgttgagcaactgggagtcactggagtacttgtcctggatgctcctccaaatggtcctgcaggcaaagcaggtcttctacctactaaacgtgattcctacggaagacttattttaggtgatataatcacatctataaatggaaagaaggtctctaatggcactgacttgtacagaattcttgaccaatgcaaagttggagataaggtaattgtggaagtgctgcgtggggatcagaaagagaagatccctgtacttctggaaccaaagcctgaagaatcgtagttcctcaagtggataagagtatgtgttgatatgcatttcttggcgaacaagcccatattattagttcatcaattgttgaatagttgtgtatatacaaaaagtacacttaaaactagggtgcaagcaatatagttgggagtctcaacactgctgcctaaatatttctaaagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="21370" stop="18749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21065" g_stop="21028" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="48" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21027" i_stop="20616" i_length="412">
            <donor d_prob="0.968" d_score="0.00"/>
            <acceptor a_prob="0.886" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20615" g_stop="20417" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="247" r_length="199" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20416" i_stop="20235" i_length="182">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20234" g_stop="20082" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="400" r_length="153" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20081" i_stop="19882" i_length="200">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19881" g_stop="19747" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="535" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19746" i_stop="19291" i_length="456">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19290" g_stop="19040" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="789" r_length="254" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E418572" ref_strand="-">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E418572" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="21065" e_stop="21028"/>
          <exon e_start="20615" e_stop="20417"/>
          <exon e_start="20234" e_stop="20082"/>
          <exon e_start="19881" e_stop="19747"/>
          <exon e_start="19290" e_stop="19040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGACTTGATCATACACTCACCACTGGTGTAATCAGGTATTTAGACATTTCATTTATGGTGTGCAGGTTCCTAATGTTCAGATATTCCAGTGAAATGGTGTTAACTATGTTTCTGTGAAGATAGGAGATGAAATAAATGAATCTAGCCACTCAAAGTCGTGGTAAAAATGACGTTAACTTCTTCCATTGTTTAAAACGGAGATGAAGTAGAGAATTTTGTTTAATCTTTTCCGTGTATTCAACTGTAAGACTAGCCTTGTGATGTTGACGTGGTTGTCACTGTTGAGTGCCTTGCACCCATAAATTCCAAGAAGCAAACATAAATACTAACCATATGTCATGGTAAATGGATACATATGCATAAGCAAGCTGTGTTGGATATGGATTAACTTAATGCTATGGATCATGCATATTCTTTAACATCACTGATCAATTTATATGTTTCTAGTGGGCTTAGGAGAGAAATCAATTCTGCGGCTACTGGCCGCCCAATCCAAGATGTTATTCAGACAGATGCAGCAATCAATCCTGGTAACAGTGGAGGGCCACTTCTAGATAGTTCTGGAAATCTTATTGGAATAAATACTGCTATATATTCTCCTTCCGGTGCATCATCAGGTGTTGGATTTTCAATTCCAGTTGATACTGTAAGTTGTTATTTGTCTTTCAGAATTTTATTATTTGCAATGCTGATTGAAACTTTTAGGTTAAACATACTTCCCCATATAAAGCAAACTGATTTATTACACCCTGTGGTTCAGAAAGTTGCCCTTGCTTCTACTACGATGTGGTAGTCTCTCCCTGATGATTTTGATTTTTACCTATTCAGGTCAGTGGCATTGTTGATCAGTTAGTGCAGTTTGGGAAAGTCACAAGGCCAATTTTGGGCATAAAGTTTGCACCTGATCAGTCCGTTGAGCAACTGGGAGTCACTGGAGTACTTGTCCTGGATGCTCCTCCAAATGGTCCTGCAGGCAAAGCAGTATGTTATTTCCTGTATCTTTTCTCTTGACATTCCTTACCAGTTTCTCCTTCCTTTTATACACTATAATTATCAGCAGTTTCCACCAGTTATATCACCCTACCGATTTTCTTTCATGTGATTGTTTGTACAAGCCAGTATAAATTTGTGACCGACATGATGAGAAACCGAATATGAGATGTTAAATCTTGTAAATGCAGGGTCTTCTACCTACTAAACGTGATTCCTACGGAAGACTTATTTTAGGTGATATAATCACATCTATAAATGGAAAGAAGGTCTCTAATGGCACCGACTTGTACAGAATTCTTGACCAATGCAAAGTTGGAGAAAAGGTAATTCTCATACATCTATTACAAAAATTTTCATCTATATTGTTGGCTTAGAATTCATATGGAGTACAGAGAATTTCTCAAGCATACACCAACTCGCAACGCTTTTAGATAAACATCATATTTGGAATTGCACCTTTGCTTGCATGAAACTTTATTAGTTGATCTTCCTTTTTATTTCTGCAACTTTATTTAAGTGGTCTTTAAGAATATGAATAGTTAGGTATTTGACCTTGATATTGACAGTAGTAATGTTTCTCTTATCAATCTTGCTAAATATTTTGTTTTCCCCAAGTTTGTATACTTGCACATACTTTTTCATTAACATTTCCATTAGCTTTTCTCCTTCCAGTAATTATGAGATAATTGGAAAGTATTCAGTATGAAAAGGTAGTGAAACTTGGAACTACATTTGTGGAAATTGTAGAAAGCTAAGCTTACGGCTGATGTTATGAACAGGTAATTGTGGAAGTGCTGCGTGGGGATCAGAAAGAGAAGATCCCTGTACTTCTGGAACCAAAGCCTGAAGAATCGTAGTTCCTCAAATGGAT-AGAGTATGTGTTGATATGCATTTCTTGGCGAACAAGCCCATATTATTAGTGCATCAATTGTTGAATGGTTGTGTATATAC-AAAACAACGCTTAAAACTAGGGTGCAAGCAATATAGTTGGGAGTCT-AACACTGCTGCCTAAATATTTCTACTATATTAG</genome_strand>
        <mrna_strand>TTTGGACTTGATCATACACTCACCACTGGTGTTATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCTTAGGAGAGAAATCAATTCTGCAGCTACTGGCCGCCCAATCCAAGATGTTATTCAGACAGATGCAGCAATCAATCCTGGTAACAGTGGAGGGCCACTTCTAGATAGTTCTGGAAATCTTATTGGAATAAATACTGCTATATATTCTCCTTCCGGTGCATCATCAGGTGTTGGATTTTCAATTCCAGTTGATACT......................................................................................................................................................................................GTCAGTGGCATTGTTGATCAATTGGTGCAGTTTGGGAAAGTCACAAGGCCAATTTTGGGCATAAAGTTTGCACCTGATCAGTCCGTTGAGCAACTGGGAGTCACTGGAGTACTTGTCCTGGATGCTCCTCCAAATGGTCCTGCAGGCAAAGCA........................................................................................................................................................................................................GGTCTTCTACCTACTAAACGTGATTCCTACGGAAGACTTATTTTAGGTGATATAATCACATCTATAAATGGAAAGAAGGTCTCTAATGGCACTGACTTGTACAGAATTCTTGACCAATGCAAAGTTGGAGATAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATTGTGGAAGTGCTGCGTGGGGATCAGAAAGAGAAGATCCCTGTACTTCTGGAACCAAAGCCTGAAGAATCGTAGTTCCTCAAGTGGATAAGAGTATGTGTTGATATGCATTTCTTGGCGAACAAGCCCATATTATTAGTTCATCAATTGTTGAATAGTTGTGTATATACAAAAAGTACACTTAAAACTAGGGTGCAAGCAATATAGTTGGGAGTCTCAACACTGCTGCCTAAATATTTCTAAAGTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E710799" ref_strand="+" ref_description="SGN-E710799 [FA56DB01]">
      <seq>ggcagacttgctcgttggtcaaaaagtatttgctattggaaatccatttggacttgatcatacactcaccactggtgtaatcagtgggcttaggagagaaatcaattctgcggctactggccgcccaatccaagatgttattcagacagatgcagcaatcaatcctggtaacagtggagggccacttctagatagttctggaaatcttattggaataaatactgctatatattctccttccggtgcatcatcaggtgttggattttcaattccagttgatactgtcagtggcattgttgatcagttagtgcagtttgggaaagtcacaaggccaattttgggcataaagtttgcacctgatcagtccgttgagcaactgggagtcactggagtacttgtcctggatgctcctccaaatggtcctgcaggcaaagcaggtcttctacctactaaacgtgattcctacggaagacttattttaggtgatataatcacatctataaatggaaagaaggtctctaatggcaccgacttgtacagaattcttgaccaatgcaaagttggagaaaaggtaattgtggaagtgctgcgtggggatcagaaagagaagatcccctgtacttcctggaacccaaagcctgaagaatcgtagttcctccaatggatagagtatgtgttgatatgcatttcttggccaaccaccccatattatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="22135" stop="18852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21835" g_stop="21790" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21789" i_stop="21066" i_length="724">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21065" g_stop="21028" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="84" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21027" i_stop="20616" i_length="412">
            <donor d_prob="0.968" d_score="0.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20615" g_stop="20417" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="283" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20416" i_stop="20235" i_length="182">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20234" g_stop="20082" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="436" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20081" i_stop="19882" i_length="200">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19881" g_stop="19747" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="571" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19746" i_stop="19291" i_length="456">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19290" g_stop="19152" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="713" r_length="142" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E710799" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21835" e_stop="21790"/>
          <exon e_start="21065" e_stop="21028"/>
          <exon e_start="20615" e_stop="20417"/>
          <exon e_start="20234" e_stop="20082"/>
          <exon e_start="19881" e_stop="19747"/>
          <exon e_start="19290" e_stop="19152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAGACTTGCTCGTTGGTCAAAAAGTATTTGCTATTGGAAATCCAGTATGTGACGAAATACAAACCTGCTAGAGAATTCTGTTCATGTAATAATAGTACTTTTATCTGCTCTGTTGTCCCTTCTCTAAACCTAGTTTGAGCCATTCTATATTCAGCTTTCGCTTTAGAGGAAAACTATCGTCTTGCAGGCGTTCATGAGCATTACAACAATTAGAAAGTATTAATTTGCATATAGAATGCTAGTGCATTTTGTTATCAATAAAATTTGTGCAAGTAAGGAAAAAAACCAACTGACAGCGAGTAAGGAAAAAAAACAACTGATAGCAAGTACAACTTAGTTCAGTCTTCTGGTTCAACTGCTTGCTTGTAAGCGCACCTTCTTCTCCAGCTAAAGAATCAGTATCTGAAAGTTGGCTGTTACTTCTGAACATTCATCGCCTGCTAATATTTTTAACTGCTTCTTTTCCCATTAGTTTAAAGCATAACAATTCCCCCCCTGTAGTGCTCCAACTTCTGCCAAAATGTGTCACTGACTTGCACTTAAATCAAATTACTTTTTAAGGGCCCTAAAACAATTGTTGACTTACACATTGAAAATCTCTTGTTGCAATGAGTATATGTTTCTTGTGTTTAGGTACCCCACCACTTCACACCTCTTTTTCCTCTTTATTCATATAAATTTACTATAAAACATGAATATTTTACTTCTCTTTTATGTTTCATATGTTAAACACATGATGAATGATTTATAATGTAAATATCTTTGCAGTTTGGACTTGATCATACACTCACCACTGGTGTAATCAGGTATTTAGACATTTCATTTATGGTGTGCAGGTTCCTAATGTTCAGATATTCCAGTGAAATGGTGTTAACTATGTTTCTGTGAAGATAGGAGATGAAATAAATGAATCTAGCCACTCAAAGTCGTGGTAAAAATGACGTTAACTTCTTCCATTGTTTAAAACGGAGATGAAGTAGAGAATTTTGTTTAATCTTTTCCGTGTATTCAACTGTAAGACTAGCCTTGTGATGTTGACGTGGTTGTCACTGTTGAGTGCCTTGCACCCATAAATTCCAAGAAGCAAACATAAATACTAACCATATGTCATGGTAAATGGATACATATGCATAAGCAAGCTGTGTTGGATATGGATTAACTTAATGCTATGGATCATGCATATTCTTTAACATCACTGATCAATTTATATGTTTCTAGTGGGCTTAGGAGAGAAATCAATTCTGCGGCTACTGGCCGCCCAATCCAAGATGTTATTCAGACAGATGCAGCAATCAATCCTGGTAACAGTGGAGGGCCACTTCTAGATAGTTCTGGAAATCTTATTGGAATAAATACTGCTATATATTCTCCTTCCGGTGCATCATCAGGTGTTGGATTTTCAATTCCAGTTGATACTGTAAGTTGTTATTTGTCTTTCAGAATTTTATTATTTGCAATGCTGATTGAAACTTTTAGGTTAAACATACTTCCCCATATAAAGCAAACTGATTTATTACACCCTGTGGTTCAGAAAGTTGCCCTTGCTTCTACTACGATGTGGTAGTCTCTCCCTGATGATTTTGATTTTTACCTATTCAGGTCAGTGGCATTGTTGATCAGTTAGTGCAGTTTGGGAAAGTCACAAGGCCAATTTTGGGCATAAAGTTTGCACCTGATCAGTCCGTTGAGCAACTGGGAGTCACTGGAGTACTTGTCCTGGATGCTCCTCCAAATGGTCCTGCAGGCAAAGCAGTATGTTATTTCCTGTATCTTTTCTCTTGACATTCCTTACCAGTTTCTCCTTCCTTTTATACACTATAATTATCAGCAGTTTCCACCAGTTATATCACCCTACCGATTTTCTTTCATGTGATTGTTTGTACAAGCCAGTATAAATTTGTGACCGACATGATGAGAAACCGAATATGAGATGTTAAATCTTGTAAATGCAGGGTCTTCTACCTACTAAACGTGATTCCTACGGAAGACTTATTTTAGGTGATATAATCACATCTATAAATGGAAAGAAGGTCTCTAATGGCACCGACTTGTACAGAATTCTTGACCAATGCAAAGTTGGAGAAAAGGTAATTCTCATACATCTATTACAAAAATTTTCATCTATATTGTTGGCTTAGAATTCATATGGAGTACAGAGAATTTCTCAAGCATACACCAACTCGCAACGCTTTTAGATAAACATCATATTTGGAATTGCACCTTTGCTTGCATGAAACTTTATTAGTTGATCTTCCTTTTTATTTCTGCAACTTTATTTAAGTGGTCTTTAAGAATATGAATAGTTAGGTATTTGACCTTGATATTGACAGTAGTAATGTTTCTCTTATCAATCTTGCTAAATATTTTGTTTTCCCCAAGTTTGTATACTTGCACATACTTTTTCATTAACATTTCCATTAGCTTTTCTCCTTCCAGTAATTATGAGATAATTGGAAAGTATTCAGTATGAAAAGGTAGTGAAACTTGGAACTACATTTGTGGAAATTGTAGAAAGCTAAGCTTACGGCTGATGTTATGAACAGGTAATTGTGGAAGTGCTGCGTGGGGATCAGAAAGAGAAGAT-CCCTGTACTT-CTGGAA-CCAAAGCCTGAAGAATCGTAGTTCCTCAAATGGATAGAGTATGTGTTGATATGCATTTCTTGGCGAACAAGCCCATATTATT</genome_strand>
        <mrna_strand>GGCAGACTTGCTCGTTGGTCAAAAAGTATTTGCTATTGGAAATCCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGACTTGATCATACACTCACCACTGGTGTAATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCTTAGGAGAGAAATCAATTCTGCGGCTACTGGCCGCCCAATCCAAGATGTTATTCAGACAGATGCAGCAATCAATCCTGGTAACAGTGGAGGGCCACTTCTAGATAGTTCTGGAAATCTTATTGGAATAAATACTGCTATATATTCTCCTTCCGGTGCATCATCAGGTGTTGGATTTTCAATTCCAGTTGATACT......................................................................................................................................................................................GTCAGTGGCATTGTTGATCAGTTAGTGCAGTTTGGGAAAGTCACAAGGCCAATTTTGGGCATAAAGTTTGCACCTGATCAGTCCGTTGAGCAACTGGGAGTCACTGGAGTACTTGTCCTGGATGCTCCTCCAAATGGTCCTGCAGGCAAAGCA........................................................................................................................................................................................................GGTCTTCTACCTACTAAACGTGATTCCTACGGAAGACTTATTTTAGGTGATATAATCACATCTATAAATGGAAAGAAGGTCTCTAATGGCACCGACTTGTACAGAATTCTTGACCAATGCAAAGTTGGAGAAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATTGTGGAAGTGCTGCGTGGGGATCAGAAAGAGAAGATCCCCTGTACTTCCTGGAACCCAAAGCCTGAAGAATCGTAGTTCCTCCAATGGATAGAGTATGTGTTGATATGCATTTCTTGGCCAACCACCCCATATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286262" ref_strand="+" ref_description="SGN-E286262 [cLES-11-P15]">
      <seq>gcgtatcggcagacttgctcgttggtcaaaaagtatttgctattggaaatccatttggacttgatcatacactcaccactggtgtaatcagtgggcttaggagagaaatcaattctgcggctactggccgcccaatccaagatgttattcagacagatgcagcaatcaatcctggtaacagtggagggccacttctagatagttctggaaatcttattggaataaatactgctatatattctccttccggtgcatcatcaggtgttggattttcaattccagttgatactgtcagtggcattgttgatcagttagtgcagtttgggaaagtcacaaggccaattttgggcataaagtttgcacctgatcagtccgttgagcaactgggagtcactggagtacttgtcctggatgctcctccaaatggtcctgcaggcaaagcaggtcttctacctactaaacgtgattcctacggaagacttattttaggtgatataatcacatctataaatggaaagaaagtctctaatggcaccgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="22142" stop="19486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21842" g_stop="21790" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21789" i_stop="21066" i_length="724">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21065" g_stop="21028" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="91" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21027" i_stop="20616" i_length="412">
            <donor d_prob="0.968" d_score="0.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20615" g_stop="20417" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="290" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20416" i_stop="20235" i_length="182">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20234" g_stop="20082" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="443" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20081" i_stop="19882" i_length="200">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19881" g_stop="19786" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="539" r_length="96" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E286262" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21842" e_stop="21790"/>
          <exon e_start="21065" e_stop="21028"/>
          <exon e_start="20615" e_stop="20417"/>
          <exon e_start="20234" e_stop="20082"/>
          <exon e_start="19881" e_stop="19786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTATCGGCAGACTTGCTCGTTGGTCAAAAAGTATTTGCTATTGGAAATCCAGTATGTGACGAAATACAAACCTGCTAGAGAATTCTGTTCATGTAATAATAGTACTTTTATCTGCTCTGTTGTCCCTTCTCTAAACCTAGTTTGAGCCATTCTATATTCAGCTTTCGCTTTAGAGGAAAACTATCGTCTTGCAGGCGTTCATGAGCATTACAACAATTAGAAAGTATTAATTTGCATATAGAATGCTAGTGCATTTTGTTATCAATAAAATTTGTGCAAGTAAGGAAAAAAACCAACTGACAGCGAGTAAGGAAAAAAAACAACTGATAGCAAGTACAACTTAGTTCAGTCTTCTGGTTCAACTGCTTGCTTGTAAGCGCACCTTCTTCTCCAGCTAAAGAATCAGTATCTGAAAGTTGGCTGTTACTTCTGAACATTCATCGCCTGCTAATATTTTTAACTGCTTCTTTTCCCATTAGTTTAAAGCATAACAATTCCCCCCCTGTAGTGCTCCAACTTCTGCCAAAATGTGTCACTGACTTGCACTTAAATCAAATTACTTTTTAAGGGCCCTAAAACAATTGTTGACTTACACATTGAAAATCTCTTGTTGCAATGAGTATATGTTTCTTGTGTTTAGGTACCCCACCACTTCACACCTCTTTTTCCTCTTTATTCATATAAATTTACTATAAAACATGAATATTTTACTTCTCTTTTATGTTTCATATGTTAAACACATGATGAATGATTTATAATGTAAATATCTTTGCAGTTTGGACTTGATCATACACTCACCACTGGTGTAATCAGGTATTTAGACATTTCATTTATGGTGTGCAGGTTCCTAATGTTCAGATATTCCAGTGAAATGGTGTTAACTATGTTTCTGTGAAGATAGGAGATGAAATAAATGAATCTAGCCACTCAAAGTCGTGGTAAAAATGACGTTAACTTCTTCCATTGTTTAAAACGGAGATGAAGTAGAGAATTTTGTTTAATCTTTTCCGTGTATTCAACTGTAAGACTAGCCTTGTGATGTTGACGTGGTTGTCACTGTTGAGTGCCTTGCACCCATAAATTCCAAGAAGCAAACATAAATACTAACCATATGTCATGGTAAATGGATACATATGCATAAGCAAGCTGTGTTGGATATGGATTAACTTAATGCTATGGATCATGCATATTCTTTAACATCACTGATCAATTTATATGTTTCTAGTGGGCTTAGGAGAGAAATCAATTCTGCGGCTACTGGCCGCCCAATCCAAGATGTTATTCAGACAGATGCAGCAATCAATCCTGGTAACAGTGGAGGGCCACTTCTAGATAGTTCTGGAAATCTTATTGGAATAAATACTGCTATATATTCTCCTTCCGGTGCATCATCAGGTGTTGGATTTTCAATTCCAGTTGATACTGTAAGTTGTTATTTGTCTTTCAGAATTTTATTATTTGCAATGCTGATTGAAACTTTTAGGTTAAACATACTTCCCCATATAAAGCAAACTGATTTATTACACCCTGTGGTTCAGAAAGTTGCCCTTGCTTCTACTACGATGTGGTAGTCTCTCCCTGATGATTTTGATTTTTACCTATTCAGGTCAGTGGCATTGTTGATCAGTTAGTGCAGTTTGGGAAAGTCACAAGGCCAATTTTGGGCATAAAGTTTGCACCTGATCAGTCCGTTGAGCAACTGGGAGTCACTGGAGTACTTGTCCTGGATGCTCCTCCAAATGGTCCTGCAGGCAAAGCAGTATGTTATTTCCTGTATCTTTTCTCTTGACATTCCTTACCAGTTTCTCCTTCCTTTTATACACTATAATTATCAGCAGTTTCCACCAGTTATATCACCCTACCGATTTTCTTTCATGTGATTGTTTGTACAAGCCAGTATAAATTTGTGACCGACATGATGAGAAACCGAATATGAGATGTTAAATCTTGTAAATGCAGGGTCTTCTACCTACTAAACGTGATTCCTACGGAAGACTTATTTTAGGTGATATAATCACATCTATAAATGGAAAGAAGGTCTCTAATGGCACCGAC</genome_strand>
        <mrna_strand>GCGTATCGGCAGACTTGCTCGTTGGTCAAAAAGTATTTGCTATTGGAAATCCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGACTTGATCATACACTCACCACTGGTGTAATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCTTAGGAGAGAAATCAATTCTGCGGCTACTGGCCGCCCAATCCAAGATGTTATTCAGACAGATGCAGCAATCAATCCTGGTAACAGTGGAGGGCCACTTCTAGATAGTTCTGGAAATCTTATTGGAATAAATACTGCTATATATTCTCCTTCCGGTGCATCATCAGGTGTTGGATTTTCAATTCCAGTTGATACT......................................................................................................................................................................................GTCAGTGGCATTGTTGATCAGTTAGTGCAGTTTGGGAAAGTCACAAGGCCAATTTTGGGCATAAAGTTTGCACCTGATCAGTCCGTTGAGCAACTGGGAGTCACTGGAGTACTTGTCCTGGATGCTCCTCCAAATGGTCCTGCAGGCAAAGCA........................................................................................................................................................................................................GGTCTTCTACCTACTAAACGTGATTCCTACGGAAGACTTATTTTAGGTGATATAATCACATCTATAAATGGAAAGAAAGTCTCTAATGGCACCGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E729683" ref_strand="+" ref_description="SGN-E729683 [LA21DB08]">
      <seq>ctctttgctctcaccagttgtcttcttaacaatggctgcatcttcacactccctagcttcttctgcttgcttctccacaactccggcacggaaattttccggctcagatcgatttcaacttgctaagtctttactctgccggaaaatacctggtttctccggcagtgtggtctgcgctcggcgtatttgctctaactatgcctcttccggtgaccagtccaactacgggaagaagcttatggatagtatttttgtggcatgcacttccgttgccttgtctttctctctctatatagcagacgttgaccctgcctcggcttttgtagtcacttcacccaggaaattgcagactgatgaacttgctactgttcgtctcttccaagagaatacaccttccgttgtgtatattactaatcttgcttccaggcaggatatgttcacactggatgtatttgaggtgcctcaagggtctgggtcaggcttcgtctgggataaaaatggaaatattgttactaattatcatgtgattcgaggtgcttctgatctcagagtgactcttgctgatcaaactacttatgatgcaaaagttgttggattttcaattccagttgatactgtcagtggcattgttgatcagttagtgcagtttgggaaagtcacaaggccaattttgggcataaagtttgcacctgatcagtccgttgagcaactgggagtcactggagtacttgtcctggatgctcctccaaatggtcctgcaggcaaagcaggtcttctacctactaaacgtgattcctacggaagacttattttaggtgatataatcacatctataaatggaaagaaggtctctaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="23300" stop="19493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23000" g_stop="22575" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="426" r_length="426" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22574" i_stop="22392" i_length="183">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22391" g_stop="22269" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="549" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22268" i_stop="21962" i_length="307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21961" g_stop="21924" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="587" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21923" i_stop="20446" i_length="1478">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.463" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20445" g_stop="20417" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="616" r_length="29" r_score="0.966"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20416" i_stop="20235" i_length="182">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20234" g_stop="20082" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="769" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="20081" i_stop="19882" i_length="200">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19881" g_stop="19793" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="770" r_stop="858" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E729683" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23000" e_stop="22575"/>
          <exon e_start="22391" e_stop="22269"/>
          <exon e_start="21961" e_stop="21924"/>
          <exon e_start="20445" e_stop="20417"/>
          <exon e_start="20234" e_stop="20082"/>
          <exon e_start="19881" e_stop="19793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTGCTCTCACCAGTTGTCTTCTTAACAATGGCTGCATCTTCACACTCCCTAGCTTCTTCTGCTTGCTTCTCCACAACTCCGGCACGGAAATTTTCCGGCTCAGATCGATTTCAACTTGCTAAGTCTTTACTCTGCCGGAAAATACCTGGTTTCTCCGGCAGTGTGGTCTGCGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGGTGACCAGTCCAACTACGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAGGTGATCTATCAATGAGGATGGTCCTTTTTTTTTTTTCCTTATATGTTAGTAATTCACGTGCATTTGAGTTTGTAGATATAGTGCTAGATGAAAGTCTGCTAGATGTATTTCCTGTTATTGTAATTGCCGTCCACCTTTGTTTTTCCGGTTTGGTTAATTTGGATTCCGTTTGTGATATAATAGGCAGGATATGTTCACACTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAGGTGAGTTAATTGGCAACTGGAAACACATTTTTCTGATTTAAACAAGTTTCTATTTATTAGTATCTGCCTAAATGATTTCAGTTTCAAGTTCCTTGCCACAGTCCTCATATTATTTCTATATGCTATCTGACTGCTCTTATACTAGCATGATTCTACAACTTCGATTGTCTTAGCTAATCGTGGAGTATTAGGAAACCTGCAATTTTTTTCATGATATGAATTTGTTTGGATTGAACAGTCTGTTAGTTGCTTAATTATGGTTTTACGCTCTAATTGCTAGTACTAATATAGTCTTAGTCTTGCTCAGAGTGACTCTTGCTGATCAAACTACTTATGATGCAAAAGTTGTTGGATTTGACCAAGATAAAGATGTTGCTGTGTTGCATATTGATGCACCAAAAGACAAGTTGCGACCTATACCAATTGGCGTATCGGCAGACTTGCTCGTTGGTCAAAAAGTATTTGCTATTGGAAATCCAGTATGTGACGAAATACAAACCTGCTAGAGAATTCTGTTCATGTAATAATAGTACTTTTATCTGCTCTGTTGTCCCTTCTCTAAACCTAGTTTGAGCCATTCTATATTCAGCTTTCGCTTTAGAGGAAAACTATCGTCTTGCAGGCGTTCATGAGCATTACAACAATTAGAAAGTATTAATTTGCATATAGAATGCTAGTGCATTTTGTTATCAATAAAATTTGTGCAAGTAAGGAAAAAAACCAACTGACAGCGAGTAAGGAAAAAAAACAACTGATAGCAAGTACAACTTAGTTCAGTCTTCTGGTTCAACTGCTTGCTTGTAAGCGCACCTTCTTCTCCAGCTAAAGAATCAGTATCTGAAAGTTGGCTGTTACTTCTGAACATTCATCGCCTGCTAATATTTTTAACTGCTTCTTTTCCCATTAGTTTAAAGCATAACAATTCCCCCCCTGTAGTGCTCCAACTTCTGCCAAAATGTGTCACTGACTTGCACTTAAATCAAATTACTTTTTAAGGGCCCTAAAACAATTGTTGACTTACACATTGAAAATCTCTTGTTGCAATGAGTATATGTTTCTTGTGTTTAGGTACCCCACCACTTCACACCTCTTTTTCCTCTTTATTCATATAAATTTACTATAAAACATGAATATTTTACTTCTCTTTTATGTTTCATATGTTAAACACATGATGAATGATTTATAATGTAAATATCTTTGCAGTTTGGACTTGATCATACACTCACCACTGGTGTAATCAGGTATTTAGACATTTCATTTATGGTGTGCAGGTTCCTAATGTTCAGATATTCCAGTGAAATGGTGTTAACTATGTTTCTGTGAAGATAGGAGATGAAATAAATGAATCTAGCCACTCAAAGTCGTGGTAAAAATGACGTTAACTTCTTCCATTGTTTAAAACGGAGATGAAGTAGAGAATTTTGTTTAATCTTTTCCGTGTATTCAACTGTAAGACTAGCCTTGTGATGTTGACGTGGTTGTCACTGTTGAGTGCCTTGCACCCATAAATTCCAAGAAGCAAACATAAATACTAACCATATGTCATGGTAAATGGATACATATGCATAAGCAAGCTGTGTTGGATATGGATTAACTTAATGCTATGGATCATGCATATTCTTTAACATCACTGATCAATTTATATGTTTCTAGTGGGCTTAGGAGAGAAATCAATTCTGCGGCTACTGGCCGCCCAATCCAAGATGTTATTCAGACAGATGCAGCAATCAATCCTGGTAACAGTGGAGGGCCACTTCTAGATAGTTCTGGAAATCTTATTGGAATAAATACTGCTATATATTCTCCTTCCGGTGCATCATCAGGTGTTGGATTTTCAATTCCAGTTGATACTGTAAGTTGTTATTTGTCTTTCAGAATTTTATTATTTGCAATGCTGATTGAAACTTTTAGGTTAAACATACTTCCCCATATAAAGCAAACTGATTTATTACACCCTGTGGTTCAGAAAGTTGCCCTTGCTTCTACTACGATGTGGTAGTCTCTCCCTGATGATTTTGATTTTTACCTATTCAGGTCAGTGGCATTGTTGATCAGTTAGTGCAGTTTGGGAAAGTCACAAGGCCAATTTTGGGCATAAAGTTTGCACCTGATCAGTCCGTTGAGCAACTGGGAGTCACTGGAGTACTTGTCCTGGATGCTCCTCCAAATGGTCCTGCAGGCAAAGCAGTATGTTATTTCCTGTATCTTTTCTCTTGACATTCCTTACCAGTTTCTCCTTCCTTTTATACACTATAATTATCAGCAGTTTCCACCAGTTATATCACCCTACCGATTTTCTTTCATGTGATTGTTTGTACAAGCCAGTATAAATTTGTGACCGACATGATGAGAAACCGAATATGAGATGTTAAATCTTGTAAATGCAGGGTCTTCTACCTACTAAACGTGATTCCTACGGAAGACTTATTTTAGGTGATATAATCACATCTATAAATGGAAAGAAGGTCTCTAATGG</genome_strand>
        <mrna_strand>CTCTTTGCTCTCACCAGTTGTCTTCTTAACAATGGCTGCATCTTCACACTCCCTAGCTTCTTCTGCTTGCTTCTCCACAACTCCGGCACGGAAATTTTCCGGCTCAGATCGATTTCAACTTGCTAAGTCTTTACTCTGCCGGAAAATACCTGGTTTCTCCGGCAGTGTGGTCTGCGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGGTGACCAGTCCAACTACGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAG.......................................................................................................................................................................................GCAGGATATGTTCACACTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAG...................................................................................................................................................................................................................................................................................................................AGTGACTCTTGCTGATCAAACTACTTATGATGCAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTGGATTTTCAATTCCAGTTGATACT......................................................................................................................................................................................GTCAGTGGCATTGTTGATCAGTTAGTGCAGTTTGGGAAAGTCACAAGGCCAATTTTGGGCATAAAGTTTGCACCTGATCAGTCCGTTGAGCAACTGGGAGTCACTGGAGTACTTGTCCTGGATGCTCCTCCAAATGGTCCTGCAGGCAAAGCA........................................................................................................................................................................................................GGTCTTCTACCTACTAAACGTGATTCCTACGGAAGACTTATTTTAGGTGATATAATCACATCTATAAATGGAAAGAAGGTCTCTAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E616284" ref_strand="+" ref_description="SGN-E616284 [66092]">
      <seq>ttgatttgaggtgcctcaagggtctgggtcaggcttcgtctgggataaaaatggaaatattgttactaattatcatgtgattcgaggtgcttctgatctcagagtgactcttgctgatcaaactacttatgatgcaaaagttgttggatttgaccaagataaagatgttgctgtattgcatatcgatgcaccaaaagacaagttgcgacctataccaattggcgtatctgcagacttgctcgttggtcaaaaagtatttgctattggaaatccatttggacttgatcatacactcaccactggtgttatcagtggccttaggagagaaatcaattctgcagctactggccgcccaatccaagatgttattcagacagatgcagcaatcaatcctggtaacagtggagggccacttctagatagttctggaaatcttattggaataaatactgctatatattctccttccggtgcatcatcaggtgttggattttcaattccagttgatactgtcagtggcattgttgatcaattggtgcagtttgggaaagtcacaaggccaattttgggcataaagtttgcacctgatcagtccgttgagcaactgggagtcactggagtacttgtcctggatgctcctccaaatggtcctgcaggcaaagcaggtcttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="22670" stop="19774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22370" g_stop="22269" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22268" i_stop="21962" i_length="307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21961" g_stop="21790" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="274" r_length="172" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21789" i_stop="21066" i_length="724">
            <donor d_prob="0.928" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21065" g_stop="21028" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="312" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21027" i_stop="20616" i_length="412">
            <donor d_prob="0.968" d_score="0.00"/>
            <acceptor a_prob="0.886" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20615" g_stop="20417" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="511" r_length="199" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20416" i_stop="20235" i_length="182">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20234" g_stop="20082" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="664" r_length="153" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="20081" i_stop="19882" i_length="200">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19881" g_stop="19873" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="665" r_stop="673" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E616284" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E616284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22370" e_stop="22269"/>
          <exon e_start="21961" e_stop="21790"/>
          <exon e_start="21065" e_stop="21028"/>
          <exon e_start="20615" e_stop="20417"/>
          <exon e_start="20234" e_stop="20082"/>
          <exon e_start="19881" e_stop="19873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAGGTGAGTTAATTGGCAACTGGAAACACATTTTTCTGATTTAAACAAGTTTCTATTTATTAGTATCTGCCTAAATGATTTCAGTTTCAAGTTCCTTGCCACAGTCCTCATATTATTTCTATATGCTATCTGACTGCTCTTATACTAGCATGATTCTACAACTTCGATTGTCTTAGCTAATCGTGGAGTATTAGGAAACCTGCAATTTTTTTCATGATATGAATTTGTTTGGATTGAACAGTCTGTTAGTTGCTTAATTATGGTTTTACGCTCTAATTGCTAGTACTAATATAGTCTTAGTCTTGCTCAGAGTGACTCTTGCTGATCAAACTACTTATGATGCAAAAGTTGTTGGATTTGACCAAGATAAAGATGTTGCTGTGTTGCATATTGATGCACCAAAAGACAAGTTGCGACCTATACCAATTGGCGTATCGGCAGACTTGCTCGTTGGTCAAAAAGTATTTGCTATTGGAAATCCAGTATGTGACGAAATACAAACCTGCTAGAGAATTCTGTTCATGTAATAATAGTACTTTTATCTGCTCTGTTGTCCCTTCTCTAAACCTAGTTTGAGCCATTCTATATTCAGCTTTCGCTTTAGAGGAAAACTATCGTCTTGCAGGCGTTCATGAGCATTACAACAATTAGAAAGTATTAATTTGCATATAGAATGCTAGTGCATTTTGTTATCAATAAAATTTGTGCAAGTAAGGAAAAAAACCAACTGACAGCGAGTAAGGAAAAAAAACAACTGATAGCAAGTACAACTTAGTTCAGTCTTCTGGTTCAACTGCTTGCTTGTAAGCGCACCTTCTTCTCCAGCTAAAGAATCAGTATCTGAAAGTTGGCTGTTACTTCTGAACATTCATCGCCTGCTAATATTTTTAACTGCTTCTTTTCCCATTAGTTTAAAGCATAACAATTCCCCCCCTGTAGTGCTCCAACTTCTGCCAAAATGTGTCACTGACTTGCACTTAAATCAAATTACTTTTTAAGGGCCCTAAAACAATTGTTGACTTACACATTGAAAATCTCTTGTTGCAATGAGTATATGTTTCTTGTGTTTAGGTACCCCACCACTTCACACCTCTTTTTCCTCTTTATTCATATAAATTTACTATAAAACATGAATATTTTACTTCTCTTTTATGTTTCATATGTTAAACACATGATGAATGATTTATAATGTAAATATCTTTGCAGTTTGGACTTGATCATACACTCACCACTGGTGTAATCAGGTATTTAGACATTTCATTTATGGTGTGCAGGTTCCTAATGTTCAGATATTCCAGTGAAATGGTGTTAACTATGTTTCTGTGAAGATAGGAGATGAAATAAATGAATCTAGCCACTCAAAGTCGTGGTAAAAATGACGTTAACTTCTTCCATTGTTTAAAACGGAGATGAAGTAGAGAATTTTGTTTAATCTTTTCCGTGTATTCAACTGTAAGACTAGCCTTGTGATGTTGACGTGGTTGTCACTGTTGAGTGCCTTGCACCCATAAATTCCAAGAAGCAAACATAAATACTAACCATATGTCATGGTAAATGGATACATATGCATAAGCAAGCTGTGTTGGATATGGATTAACTTAATGCTATGGATCATGCATATTCTTTAACATCACTGATCAATTTATATGTTTCTAGTGGGCTTAGGAGAGAAATCAATTCTGCGGCTACTGGCCGCCCAATCCAAGATGTTATTCAGACAGATGCAGCAATCAATCCTGGTAACAGTGGAGGGCCACTTCTAGATAGTTCTGGAAATCTTATTGGAATAAATACTGCTATATATTCTCCTTCCGGTGCATCATCAGGTGTTGGATTTTCAATTCCAGTTGATACTGTAAGTTGTTATTTGTCTTTCAGAATTTTATTATTTGCAATGCTGATTGAAACTTTTAGGTTAAACATACTTCCCCATATAAAGCAAACTGATTTATTACACCCTGTGGTTCAGAAAGTTGCCCTTGCTTCTACTACGATGTGGTAGTCTCTCCCTGATGATTTTGATTTTTACCTATTCAGGTCAGTGGCATTGTTGATCAGTTAGTGCAGTTTGGGAAAGTCACAAGGCCAATTTTGGGCATAAAGTTTGCACCTGATCAGTCCGTTGAGCAACTGGGAGTCACTGGAGTACTTGTCCTGGATGCTCCTCCAAATGGTCCTGCAGGCAAAGCAGTATGTTATTTCCTGTATCTTTTCTCTTGACATTCCTTACCAGTTTCTCCTTCCTTTTATACACTATAATTATCAGCAGTTTCCACCAGTTATATCACCCTACCGATTTTCTTTCATGTGATTGTTTGTACAAGCCAGTATAAATTTGTGACCGACATGATGAGAAACCGAATATGAGATGTTAAATCTTGTAAATGCAGGGTCTTCTA</genome_strand>
        <mrna_strand>TTGATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAG...................................................................................................................................................................................................................................................................................................................AGTGACTCTTGCTGATCAAACTACTTATGATGCAAAAGTTGTTGGATTTGACCAAGATAAAGATGTTGCTGTATTGCATATCGATGCACCAAAAGACAAGTTGCGACCTATACCAATTGGCGTATCTGCAGACTTGCTCGTTGGTCAAAAAGTATTTGCTATTGGAAATCCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGACTTGATCATACACTCACCACTGGTGTTATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCTTAGGAGAGAAATCAATTCTGCAGCTACTGGCCGCCCAATCCAAGATGTTATTCAGACAGATGCAGCAATCAATCCTGGTAACAGTGGAGGGCCACTTCTAGATAGTTCTGGAAATCTTATTGGAATAAATACTGCTATATATTCTCCTTCCGGTGCATCATCAGGTGTTGGATTTTCAATTCCAGTTGATACT......................................................................................................................................................................................GTCAGTGGCATTGTTGATCAATTGGTGCAGTTTGGGAAAGTCACAAGGCCAATTTTGGGCATAAAGTTTGCACCTGATCAGTCCGTTGAGCAACTGGGAGTCACTGGAGTACTTGTCCTGGATGCTCCTCCAAATGGTCCTGCAGGCAAAGCA........................................................................................................................................................................................................GGTCTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E303366" ref_strand="+" ref_description="SGN-E303366 [cLEX-2-B5]">
      <seq>gataaaaatggaaatattgttactaattatcatgtgattcgaggtgcttctgatctcaaagtgactcttgctgatcaaactacttatgatgcaaacgttgttggatttgaccaagatcaagatgttgctgtgttgcatattgatgcaccaaaagacaagttgcgacctataccaattggcgtctcggcagacttgctcgttggtcaaaaagtatttgctattggaaatccatttggacttgatcatacactcaccactggtgtaatcagtgggcttaggagagaaatcaattctgcggctactggccgaccaatccaagatgttattcagacagatgcagcaatcaatcctggtaacagtggagggccacttatagatagttctggaaatcttattggaataaatactgctatatattctccttccggagcatcatcaggtgttggattttcaattccagttgatactgacagtggcattgatgatcagttagtgcagtttgggaaagtcacaatgccaattctgggcataaagatcgcacctgatcagtccgtagagcaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="22627" stop="19839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22327" g_stop="22269" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22268" i_stop="21962" i_length="307">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21961" g_stop="21790" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="231" r_length="172" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21789" i_stop="21066" i_length="724">
            <donor d_prob="0.928" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21065" g_stop="21028" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="269" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21027" i_stop="20616" i_length="412">
            <donor d_prob="0.968" d_score="0.00"/>
            <acceptor a_prob="0.886" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20615" g_stop="20417" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="468" r_length="199" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20416" i_stop="20235" i_length="182">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20234" g_stop="20139" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="564" r_length="96" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E303366" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22327" e_stop="22269"/>
          <exon e_start="21961" e_stop="21790"/>
          <exon e_start="21065" e_stop="21028"/>
          <exon e_start="20615" e_stop="20417"/>
          <exon e_start="20234" e_stop="20139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAGGTGAGTTAATTGGCAACTGGAAACACATTTTTCTGATTTAAACAAGTTTCTATTTATTAGTATCTGCCTAAATGATTTCAGTTTCAAGTTCCTTGCCACAGTCCTCATATTATTTCTATATGCTATCTGACTGCTCTTATACTAGCATGATTCTACAACTTCGATTGTCTTAGCTAATCGTGGAGTATTAGGAAACCTGCAATTTTTTTCATGATATGAATTTGTTTGGATTGAACAGTCTGTTAGTTGCTTAATTATGGTTTTACGCTCTAATTGCTAGTACTAATATAGTCTTAGTCTTGCTCAGAGTGACTCTTGCTGATCAAACTACTTATGATGCAAAAGTTGTTGGATTTGACCAAGATAAAGATGTTGCTGTGTTGCATATTGATGCACCAAAAGACAAGTTGCGACCTATACCAATTGGCGTATCGGCAGACTTGCTCGTTGGTCAAAAAGTATTTGCTATTGGAAATCCAGTATGTGACGAAATACAAACCTGCTAGAGAATTCTGTTCATGTAATAATAGTACTTTTATCTGCTCTGTTGTCCCTTCTCTAAACCTAGTTTGAGCCATTCTATATTCAGCTTTCGCTTTAGAGGAAAACTATCGTCTTGCAGGCGTTCATGAGCATTACAACAATTAGAAAGTATTAATTTGCATATAGAATGCTAGTGCATTTTGTTATCAATAAAATTTGTGCAAGTAAGGAAAAAAACCAACTGACAGCGAGTAAGGAAAAAAAACAACTGATAGCAAGTACAACTTAGTTCAGTCTTCTGGTTCAACTGCTTGCTTGTAAGCGCACCTTCTTCTCCAGCTAAAGAATCAGTATCTGAAAGTTGGCTGTTACTTCTGAACATTCATCGCCTGCTAATATTTTTAACTGCTTCTTTTCCCATTAGTTTAAAGCATAACAATTCCCCCCCTGTAGTGCTCCAACTTCTGCCAAAATGTGTCACTGACTTGCACTTAAATCAAATTACTTTTTAAGGGCCCTAAAACAATTGTTGACTTACACATTGAAAATCTCTTGTTGCAATGAGTATATGTTTCTTGTGTTTAGGTACCCCACCACTTCACACCTCTTTTTCCTCTTTATTCATATAAATTTACTATAAAACATGAATATTTTACTTCTCTTTTATGTTTCATATGTTAAACACATGATGAATGATTTATAATGTAAATATCTTTGCAGTTTGGACTTGATCATACACTCACCACTGGTGTAATCAGGTATTTAGACATTTCATTTATGGTGTGCAGGTTCCTAATGTTCAGATATTCCAGTGAAATGGTGTTAACTATGTTTCTGTGAAGATAGGAGATGAAATAAATGAATCTAGCCACTCAAAGTCGTGGTAAAAATGACGTTAACTTCTTCCATTGTTTAAAACGGAGATGAAGTAGAGAATTTTGTTTAATCTTTTCCGTGTATTCAACTGTAAGACTAGCCTTGTGATGTTGACGTGGTTGTCACTGTTGAGTGCCTTGCACCCATAAATTCCAAGAAGCAAACATAAATACTAACCATATGTCATGGTAAATGGATACATATGCATAAGCAAGCTGTGTTGGATATGGATTAACTTAATGCTATGGATCATGCATATTCTTTAACATCACTGATCAATTTATATGTTTCTAGTGGGCTTAGGAGAGAAATCAATTCTGCGGCTACTGGCCGCCCAATCCAAGATGTTATTCAGACAGATGCAGCAATCAATCCTGGTAACAGTGGAGGGCCACTTCTAGATAGTTCTGGAAATCTTATTGGAATAAATACTGCTATATATTCTCCTTCCGGTGCATCATCAGGTGTTGGATTTTCAATTCCAGTTGATACTGTAAGTTGTTATTTGTCTTTCAGAATTTTATTATTTGCAATGCTGATTGAAACTTTTAGGTTAAACATACTTCCCCATATAAAGCAAACTGATTTATTACACCCTGTGGTTCAGAAAGTTGCCCTTGCTTCTACTACGATGTGGTAGTCTCTCCCTGATGATTTTGATTTTTACCTATTCAGGTCAGTGGCATTGTTGATCAGTTAGTGCAGTTTGGGAAAGTCACAAGGCCAATTTTGGGCATAAAGTTTGCACCTGATCAGTCCGTTGAGCAACTG</genome_strand>
        <mrna_strand>GATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAA...................................................................................................................................................................................................................................................................................................................AGTGACTCTTGCTGATCAAACTACTTATGATGCAAACGTTGTTGGATTTGACCAAGATCAAGATGTTGCTGTGTTGCATATTGATGCACCAAAAGACAAGTTGCGACCTATACCAATTGGCGTCTCGGCAGACTTGCTCGTTGGTCAAAAAGTATTTGCTATTGGAAATCCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGACTTGATCATACACTCACCACTGGTGTAATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCTTAGGAGAGAAATCAATTCTGCGGCTACTGGCCGACCAATCCAAGATGTTATTCAGACAGATGCAGCAATCAATCCTGGTAACAGTGGAGGGCCACTTATAGATAGTTCTGGAAATCTTATTGGAATAAATACTGCTATATATTCTCCTTCCGGAGCATCATCAGGTGTTGGATTTTCAATTCCAGTTGATACT......................................................................................................................................................................................GACAGTGGCATTGATGATCAGTTAGTGCAGTTTGGGAAAGTCACAATGCCAATTCTGGGCATAAAGATCGCACCTGATCAGTCCGTAGAGCAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E621415" ref_strand="+" ref_description="SGN-E621415 [75161]">
      <seq>ctgctctgctctaaacaagtcagctctcggcagctgtcttcttaacaatggctgcatcttcacactccttagctttcttcagcttgcttctccacaactccgacacggaaaatttccggctcagatcgatttcaacttgctaagtctatactctgccggaaaatacctggtttcgccggcagtgtggtctgtgctcggcgtatgtgctctaattatgcctcttccgatgaccagtccaactacaggaagaagcttatggatagtatttttgtggcatgcacttccgttgccttgtctttttctctctatatagcagacgttgaccctgcctcggcttttgtagtcacttcacccaggaaattgcagactgatgaacttgctactgttcgcctcttccaggagaatacaccttccgttgtgtatattactaatcttgcttccaggcaggatatgtttacattggatgtatttgaggtgcctcaagggtctgggtcaggcttcgtctgggataaaaatggaaatattgttactaattatcatgtgattcgaggtgcctctgatctcagagtgactcttgctgatcaaactacttatgatgcaaaagttgttggatttgaccaagataacgatgttgctgtgttgcatatcgatgcaccaaaagacaagttgcgacctataccaattggagtatctgcagacttgctcgttaggtcaaaaagtattggctattggaaatccattttggacttgatcatacacttaccacttggtgttatcagtggccttaggagagaaatcattctgcagctacttgggcgccaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="23294" stop="20271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22986" g_stop="22575" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="443" r_length="413" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22574" i_stop="22392" i_length="183">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22391" g_stop="22269" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="566" r_length="123" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22268" i_stop="21962" i_length="307">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21961" g_stop="21790" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="739" r_length="173" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21789" i_stop="21066" i_length="724">
            <donor d_prob="0.928" d_score="0.92"/>
            <acceptor a_prob="0.991" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21065" g_stop="21028" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="740" r_stop="779" r_length="40" r_score="0.842"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21027" i_stop="20616" i_length="412">
            <donor d_prob="0.968" d_score="0.84"/>
            <acceptor a_prob="0.886" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20615" g_stop="20571" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="780" r_stop="823" r_length="44" r_score="0.822"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E621415" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E621415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22986" e_stop="22575"/>
          <exon e_start="22391" e_stop="22269"/>
          <exon e_start="21961" e_stop="21790"/>
          <exon e_start="21065" e_stop="21028"/>
          <exon e_start="20615" e_stop="20571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTGTCTTCTTAACAATGGCTGCATCTTCACACTCCCTAGC-TTCTTCTGCTTGCTTCTCCACAACTCCGGCACGGAAATTTTCCGGCTCAGATCGATTTCAACTTGCTAAGTCTTTACTCTGCCGGAAAATACCTGGTTTCTCCGGCAGTGTGGTCTGCGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGGTGACCAGTCCAACTACGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAGGTGATCTATCAATGAGGATGGTCCTTTTTTTTTTTTCCTTATATGTTAGTAATTCACGTGCATTTGAGTTTGTAGATATAGTGCTAGATGAAAGTCTGCTAGATGTATTTCCTGTTATTGTAATTGCCGTCCACCTTTGTTTTTCCGGTTTGGTTAATTTGGATTCCGTTTGTGATATAATAGGCAGGATATGTTCACACTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAGGTGAGTTAATTGGCAACTGGAAACACATTTTTCTGATTTAAACAAGTTTCTATTTATTAGTATCTGCCTAAATGATTTCAGTTTCAAGTTCCTTGCCACAGTCCTCATATTATTTCTATATGCTATCTGACTGCTCTTATACTAGCATGATTCTACAACTTCGATTGTCTTAGCTAATCGTGGAGTATTAGGAAACCTGCAATTTTTTTCATGATATGAATTTGTTTGGATTGAACAGTCTGTTAGTTGCTTAATTATGGTTTTACGCTCTAATTGCTAGTACTAATATAGTCTTAGTCTTGCTCAGAGTGACTCTTGCTGATCAAACTACTTATGATGCAAAAGTTGTTGGATTTGACCAAGATAAAGATGTTGCTGTGTTGCATATTGATGCACCAAAAGACAAGTTGCGACCTATACCAATTGGCGTATCGGCAGACTTGCTCGTT-GGTCAAAAAGTATTTGCTATTGGAAATCCAGTATGTGACGAAATACAAACCTGCTAGAGAATTCTGTTCATGTAATAATAGTACTTTTATCTGCTCTGTTGTCCCTTCTCTAAACCTAGTTTGAGCCATTCTATATTCAGCTTTCGCTTTAGAGGAAAACTATCGTCTTGCAGGCGTTCATGAGCATTACAACAATTAGAAAGTATTAATTTGCATATAGAATGCTAGTGCATTTTGTTATCAATAAAATTTGTGCAAGTAAGGAAAAAAACCAACTGACAGCGAGTAAGGAAAAAAAACAACTGATAGCAAGTACAACTTAGTTCAGTCTTCTGGTTCAACTGCTTGCTTGTAAGCGCACCTTCTTCTCCAGCTAAAGAATCAGTATCTGAAAGTTGGCTGTTACTTCTGAACATTCATCGCCTGCTAATATTTTTAACTGCTTCTTTTCCCATTAGTTTAAAGCATAACAATTCCCCCCCTGTAGTGCTCCAACTTCTGCCAAAATGTGTCACTGACTTGCACTTAAATCAAATTACTTTTTAAGGGCCCTAAAACAATTGTTGACTTACACATTGAAAATCTCTTGTTGCAATGAGTATATGTTTCTTGTGTTTAGGTACCCCACCACTTCACACCTCTTTTTCCTCTTTATTCATATAAATTTACTATAAAACATGAATATTTTACTTCTCTTTTATGTTTCATATGTTAAACACATGATGAATGATTTATAATGTAAATATCTTTGCAG-TTTGGACTTGATCATACACTCACCAC-TGGTGTAATCAGGTATTTAGACATTTCATTTATGGTGTGCAGGTTCCTAATGTTCAGATATTCCAGTGAAATGGTGTTAACTATGTTTCTGTGAAGATAGGAGATGAAATAAATGAATCTAGCCACTCAAAGTCGTGGTAAAAATGACGTTAACTTCTTCCATTGTTTAAAACGGAGATGAAGTAGAGAATTTTGTTTAATCTTTTCCGTGTATTCAACTGTAAGACTAGCCTTGTGATGTTGACGTGGTTGTCACTGTTGAGTGCCTTGCACCCATAAATTCCAAGAAGCAAACATAAATACTAACCATATGTCATGGTAAATGGATACATATGCATAAGCAAGCTGTGTTGGATATGGATTAACTTAATGCTATGGATCATGCATATTCTTTAACATCACTGATCAATTTATATGTTTCTAGTGGGCTTAGGAGAGAAATCAATTCTGCGGCTACTGGCCGCCCAAT</genome_strand>
        <mrna_strand>CAGCTGTCTTCTTAACAATGGCTGCATCTTCACACTCCTTAGCTTTCTTCAGCTTGCTTCTCCACAACTCCGACACGGAAAATTTCCGGCTCAGATCGATTTCAACTTGCTAAGTCTATACTCTGCCGGAAAATACCTGGTTTCGCCGGCAGTGTGGTCTGTGCTCGGCGTATGTGCTCTAATTATGCCTCTTCCGATGACCAGTCCAACTACAGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTTTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGCCTCTTCCAGGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAG.......................................................................................................................................................................................GCAGGATATGTTTACATTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCCTCTGATCTCAG...................................................................................................................................................................................................................................................................................................................AGTGACTCTTGCTGATCAAACTACTTATGATGCAAAAGTTGTTGGATTTGACCAAGATAACGATGTTGCTGTGTTGCATATCGATGCACCAAAAGACAAGTTGCGACCTATACCAATTGGAGTATCTGCAGACTTGCTCGTTAGGTCAAAAAGTATTGGCTATTGGAAATCCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGGACTTGATCATACACTTACCACTTGGTGTTATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCTTAGGAGAGAAATC-ATTCTGCAGCTACTTGGGCGCCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E704574" ref_strand="+" ref_description="SGN-E704574 [FA24CF10]">
      <seq>ctttgctctcaccagttgtcttcttaacaatggctgcatcttcacactccctagcttcttctgcttgcttctccacaactccggcacggaaattttccggctcagatcgatttcaacttgctaagtctttactctgccggaaaatacctggtttctccggcagtgtggtctgcgctcggcgtatttgctctaactatgcctcttccggtgaccagtccaactacgggaagaagcttatggatagtatttttgtggcatgcacttccgttgccttgtctttctctctctatatagcagacgttgaccctgcctcggcttttgtagtcacttcacccaggaaattgcagactgatgaacttgctactgttcgtctcttccaagagaatacaccttccgttgtgtatattactaatcttgcttccaggcaggatatgttcacactggatgtatttgaggtgcctcaagggtctgggtcaggcttcgtctgggataaaaatggaaatattgttactaattatcatgtgattcgaggtgcttctgatctcagagtgactcttgctgatcaaactacttatgatgcaaaagttgttggatttgaccaagataaagatgttgctgtgttgcatattgatgcaccaaaagacaagttgcgacctataccaattggcgtatcggcagacttgctcgttggtcaaaaagtatttgctattggaaatccatttggacttgatcatacactcaccactggtgtaatcagtgggcttaggagagaaatcaattctgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="23298" stop="20288"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22998" g_stop="22575" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22574" i_stop="22392" i_length="183">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22391" g_stop="22269" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="547" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22268" i_stop="21962" i_length="307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21961" g_stop="21790" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="719" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21789" i_stop="21066" i_length="724">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21065" g_stop="21028" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="720" r_stop="757" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21027" i_stop="20616" i_length="412">
            <donor d_prob="0.968" d_score="0.00"/>
            <acceptor a_prob="0.886" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20615" g_stop="20588" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="758" r_stop="785" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E704574" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22998" e_stop="22575"/>
          <exon e_start="22391" e_stop="22269"/>
          <exon e_start="21961" e_stop="21790"/>
          <exon e_start="21065" e_stop="21028"/>
          <exon e_start="20615" e_stop="20588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGCTCTCACCAGTTGTCTTCTTAACAATGGCTGCATCTTCACACTCCCTAGCTTCTTCTGCTTGCTTCTCCACAACTCCGGCACGGAAATTTTCCGGCTCAGATCGATTTCAACTTGCTAAGTCTTTACTCTGCCGGAAAATACCTGGTTTCTCCGGCAGTGTGGTCTGCGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGGTGACCAGTCCAACTACGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAGGTGATCTATCAATGAGGATGGTCCTTTTTTTTTTTTCCTTATATGTTAGTAATTCACGTGCATTTGAGTTTGTAGATATAGTGCTAGATGAAAGTCTGCTAGATGTATTTCCTGTTATTGTAATTGCCGTCCACCTTTGTTTTTCCGGTTTGGTTAATTTGGATTCCGTTTGTGATATAATAGGCAGGATATGTTCACACTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAGGTGAGTTAATTGGCAACTGGAAACACATTTTTCTGATTTAAACAAGTTTCTATTTATTAGTATCTGCCTAAATGATTTCAGTTTCAAGTTCCTTGCCACAGTCCTCATATTATTTCTATATGCTATCTGACTGCTCTTATACTAGCATGATTCTACAACTTCGATTGTCTTAGCTAATCGTGGAGTATTAGGAAACCTGCAATTTTTTTCATGATATGAATTTGTTTGGATTGAACAGTCTGTTAGTTGCTTAATTATGGTTTTACGCTCTAATTGCTAGTACTAATATAGTCTTAGTCTTGCTCAGAGTGACTCTTGCTGATCAAACTACTTATGATGCAAAAGTTGTTGGATTTGACCAAGATAAAGATGTTGCTGTGTTGCATATTGATGCACCAAAAGACAAGTTGCGACCTATACCAATTGGCGTATCGGCAGACTTGCTCGTTGGTCAAAAAGTATTTGCTATTGGAAATCCAGTATGTGACGAAATACAAACCTGCTAGAGAATTCTGTTCATGTAATAATAGTACTTTTATCTGCTCTGTTGTCCCTTCTCTAAACCTAGTTTGAGCCATTCTATATTCAGCTTTCGCTTTAGAGGAAAACTATCGTCTTGCAGGCGTTCATGAGCATTACAACAATTAGAAAGTATTAATTTGCATATAGAATGCTAGTGCATTTTGTTATCAATAAAATTTGTGCAAGTAAGGAAAAAAACCAACTGACAGCGAGTAAGGAAAAAAAACAACTGATAGCAAGTACAACTTAGTTCAGTCTTCTGGTTCAACTGCTTGCTTGTAAGCGCACCTTCTTCTCCAGCTAAAGAATCAGTATCTGAAAGTTGGCTGTTACTTCTGAACATTCATCGCCTGCTAATATTTTTAACTGCTTCTTTTCCCATTAGTTTAAAGCATAACAATTCCCCCCCTGTAGTGCTCCAACTTCTGCCAAAATGTGTCACTGACTTGCACTTAAATCAAATTACTTTTTAAGGGCCCTAAAACAATTGTTGACTTACACATTGAAAATCTCTTGTTGCAATGAGTATATGTTTCTTGTGTTTAGGTACCCCACCACTTCACACCTCTTTTTCCTCTTTATTCATATAAATTTACTATAAAACATGAATATTTTACTTCTCTTTTATGTTTCATATGTTAAACACATGATGAATGATTTATAATGTAAATATCTTTGCAGTTTGGACTTGATCATACACTCACCACTGGTGTAATCAGGTATTTAGACATTTCATTTATGGTGTGCAGGTTCCTAATGTTCAGATATTCCAGTGAAATGGTGTTAACTATGTTTCTGTGAAGATAGGAGATGAAATAAATGAATCTAGCCACTCAAAGTCGTGGTAAAAATGACGTTAACTTCTTCCATTGTTTAAAACGGAGATGAAGTAGAGAATTTTGTTTAATCTTTTCCGTGTATTCAACTGTAAGACTAGCCTTGTGATGTTGACGTGGTTGTCACTGTTGAGTGCCTTGCACCCATAAATTCCAAGAAGCAAACATAAATACTAACCATATGTCATGGTAAATGGATACATATGCATAAGCAAGCTGTGTTGGATATGGATTAACTTAATGCTATGGATCATGCATATTCTTTAACATCACTGATCAATTTATATGTTTCTAGTGGGCTTAGGAGAGAAATCAATTCTGCG</genome_strand>
        <mrna_strand>CTTTGCTCTCACCAGTTGTCTTCTTAACAATGGCTGCATCTTCACACTCCCTAGCTTCTTCTGCTTGCTTCTCCACAACTCCGGCACGGAAATTTTCCGGCTCAGATCGATTTCAACTTGCTAAGTCTTTACTCTGCCGGAAAATACCTGGTTTCTCCGGCAGTGTGGTCTGCGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGGTGACCAGTCCAACTACGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAG.......................................................................................................................................................................................GCAGGATATGTTCACACTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAG...................................................................................................................................................................................................................................................................................................................AGTGACTCTTGCTGATCAAACTACTTATGATGCAAAAGTTGTTGGATTTGACCAAGATAAAGATGTTGCTGTGTTGCATATTGATGCACCAAAAGACAAGTTGCGACCTATACCAATTGGCGTATCGGCAGACTTGCTCGTTGGTCAAAAAGTATTTGCTATTGGAAATCCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGACTTGATCATACACTCACCACTGGTGTAATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCTTAGGAGAGAAATCAATTCTGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E274855" ref_strand="+" ref_description="SGN-E274855 [cLEN-13-J20]">
      <seq>tctgcgctcggcgtatttgctctaactatgcctcttccggtgaccagtccaactacgggaagaagcttatggatagtatttttgtggcatgcacttccgttgccttgtctttctctctctatatagcagacgttgaccctgcctcggcttttgtagtcacttcacccaggaaattgcagactgatgaacttgctactgttcgtctcttccaagagaatacaccttccgttgtgtatattactaatcttgcttccaggcaggatatgttcacactggatgtatttgaggtgcctcaagggtctgggtcaggcttcgtctgggataaaaatggaaatattgttactaattatcatgtgattcgaggtgcttctgatctcagagtgactcttgctgatcaaactacttatgatgcaaaagttgttggatttgaccaagataaagatgttgctgtgttgcatattgatgcaccaaaagacaagttgcgacctataccaattggcgtatcggcagacttgctcgttggtcaaaaagtatttgctattggaaatccatttggacttgatcatacactcaccact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="23130" stop="20739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22830" g_stop="22575" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22574" i_stop="22392" i_length="183">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22391" g_stop="22269" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="379" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22268" i_stop="21962" i_length="307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21961" g_stop="21790" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="551" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21789" i_stop="21066" i_length="724">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21065" g_stop="21039" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="578" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E274855" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22830" e_stop="22575"/>
          <exon e_start="22391" e_stop="22269"/>
          <exon e_start="21961" e_stop="21790"/>
          <exon e_start="21065" e_stop="21039"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGCGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGGTGACCAGTCCAACTACGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAGGTGATCTATCAATGAGGATGGTCCTTTTTTTTTTTTCCTTATATGTTAGTAATTCACGTGCATTTGAGTTTGTAGATATAGTGCTAGATGAAAGTCTGCTAGATGTATTTCCTGTTATTGTAATTGCCGTCCACCTTTGTTTTTCCGGTTTGGTTAATTTGGATTCCGTTTGTGATATAATAGGCAGGATATGTTCACACTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAGGTGAGTTAATTGGCAACTGGAAACACATTTTTCTGATTTAAACAAGTTTCTATTTATTAGTATCTGCCTAAATGATTTCAGTTTCAAGTTCCTTGCCACAGTCCTCATATTATTTCTATATGCTATCTGACTGCTCTTATACTAGCATGATTCTACAACTTCGATTGTCTTAGCTAATCGTGGAGTATTAGGAAACCTGCAATTTTTTTCATGATATGAATTTGTTTGGATTGAACAGTCTGTTAGTTGCTTAATTATGGTTTTACGCTCTAATTGCTAGTACTAATATAGTCTTAGTCTTGCTCAGAGTGACTCTTGCTGATCAAACTACTTATGATGCAAAAGTTGTTGGATTTGACCAAGATAAAGATGTTGCTGTGTTGCATATTGATGCACCAAAAGACAAGTTGCGACCTATACCAATTGGCGTATCGGCAGACTTGCTCGTTGGTCAAAAAGTATTTGCTATTGGAAATCCAGTATGTGACGAAATACAAACCTGCTAGAGAATTCTGTTCATGTAATAATAGTACTTTTATCTGCTCTGTTGTCCCTTCTCTAAACCTAGTTTGAGCCATTCTATATTCAGCTTTCGCTTTAGAGGAAAACTATCGTCTTGCAGGCGTTCATGAGCATTACAACAATTAGAAAGTATTAATTTGCATATAGAATGCTAGTGCATTTTGTTATCAATAAAATTTGTGCAAGTAAGGAAAAAAACCAACTGACAGCGAGTAAGGAAAAAAAACAACTGATAGCAAGTACAACTTAGTTCAGTCTTCTGGTTCAACTGCTTGCTTGTAAGCGCACCTTCTTCTCCAGCTAAAGAATCAGTATCTGAAAGTTGGCTGTTACTTCTGAACATTCATCGCCTGCTAATATTTTTAACTGCTTCTTTTCCCATTAGTTTAAAGCATAACAATTCCCCCCCTGTAGTGCTCCAACTTCTGCCAAAATGTGTCACTGACTTGCACTTAAATCAAATTACTTTTTAAGGGCCCTAAAACAATTGTTGACTTACACATTGAAAATCTCTTGTTGCAATGAGTATATGTTTCTTGTGTTTAGGTACCCCACCACTTCACACCTCTTTTTCCTCTTTATTCATATAAATTTACTATAAAACATGAATATTTTACTTCTCTTTTATGTTTCATATGTTAAACACATGATGAATGATTTATAATGTAAATATCTTTGCAGTTTGGACTTGATCATACACTCACCACT</genome_strand>
        <mrna_strand>TCTGCGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGGTGACCAGTCCAACTACGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAG.......................................................................................................................................................................................GCAGGATATGTTCACACTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAG...................................................................................................................................................................................................................................................................................................................AGTGACTCTTGCTGATCAAACTACTTATGATGCAAAAGTTGTTGGATTTGACCAAGATAAAGATGTTGCTGTGTTGCATATTGATGCACCAAAAGACAAGTTGCGACCTATACCAATTGGCGTATCGGCAGACTTGCTCGTTGGTCAAAAAGTATTTGCTATTGGAAATCCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGACTTGATCATACACTCACCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E272938" ref_strand="+" ref_description="SGN-E272938 [cLEM-25-N14]">
      <seq>ttatggatagtatttttgtggcatgcacttccgttgccttgtctttctctctctatatagcagacgttgaccctgcctcggcttttgtagtcacttcacccaggaaattgcagactgatgaacttgctactgttcgtctcttccaagagaatacaccttccgttgtgtatactactaatcttgcttccaggcaggatatgttcacactggatgtatttgaggtgcctcaagggtctgggtcaggcttcgtctgggataaaaatggaaatattgttactaattatcatgtgattcgaggtgcttctgatctcagagtgactcttgctgatcaaactacttatgatgcaaaagttgttggatttgaccaagataaagatgttgctgtgttgcatattgatgcaccaaaagacaagttgcgacctataccaattggcgtatcggcagacttgctcgttggtcaaaaagtatttgctattggaaatccagtatgtgacgaaatacaaacctgctagagaattctgttcattttggacttgatcatacactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="23064" stop="20742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22764" g_stop="22575" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22574" i_stop="22392" i_length="183">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22391" g_stop="22269" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="313" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22268" i_stop="21962" i_length="307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21961" g_stop="21749" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="526" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21748" i_stop="21066" i_length="683">
            <donor d_prob="0.779" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21065" g_stop="21042" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="550" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E272938" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22764" e_stop="22575"/>
          <exon e_start="22391" e_stop="22269"/>
          <exon e_start="21961" e_stop="21749"/>
          <exon e_start="21065" e_stop="21042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAGGTGATCTATCAATGAGGATGGTCCTTTTTTTTTTTTCCTTATATGTTAGTAATTCACGTGCATTTGAGTTTGTAGATATAGTGCTAGATGAAAGTCTGCTAGATGTATTTCCTGTTATTGTAATTGCCGTCCACCTTTGTTTTTCCGGTTTGGTTAATTTGGATTCCGTTTGTGATATAATAGGCAGGATATGTTCACACTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAGGTGAGTTAATTGGCAACTGGAAACACATTTTTCTGATTTAAACAAGTTTCTATTTATTAGTATCTGCCTAAATGATTTCAGTTTCAAGTTCCTTGCCACAGTCCTCATATTATTTCTATATGCTATCTGACTGCTCTTATACTAGCATGATTCTACAACTTCGATTGTCTTAGCTAATCGTGGAGTATTAGGAAACCTGCAATTTTTTTCATGATATGAATTTGTTTGGATTGAACAGTCTGTTAGTTGCTTAATTATGGTTTTACGCTCTAATTGCTAGTACTAATATAGTCTTAGTCTTGCTCAGAGTGACTCTTGCTGATCAAACTACTTATGATGCAAAAGTTGTTGGATTTGACCAAGATAAAGATGTTGCTGTGTTGCATATTGATGCACCAAAAGACAAGTTGCGACCTATACCAATTGGCGTATCGGCAGACTTGCTCGTTGGTCAAAAAGTATTTGCTATTGGAAATCCAGTATGTGACGAAATACAAACCTGCTAGAGAATTCTGTTCATGTAATAATAGTACTTTTATCTGCTCTGTTGTCCCTTCTCTAAACCTAGTTTGAGCCATTCTATATTCAGCTTTCGCTTTAGAGGAAAACTATCGTCTTGCAGGCGTTCATGAGCATTACAACAATTAGAAAGTATTAATTTGCATATAGAATGCTAGTGCATTTTGTTATCAATAAAATTTGTGCAAGTAAGGAAAAAAACCAACTGACAGCGAGTAAGGAAAAAAAACAACTGATAGCAAGTACAACTTAGTTCAGTCTTCTGGTTCAACTGCTTGCTTGTAAGCGCACCTTCTTCTCCAGCTAAAGAATCAGTATCTGAAAGTTGGCTGTTACTTCTGAACATTCATCGCCTGCTAATATTTTTAACTGCTTCTTTTCCCATTAGTTTAAAGCATAACAATTCCCCCCCTGTAGTGCTCCAACTTCTGCCAAAATGTGTCACTGACTTGCACTTAAATCAAATTACTTTTTAAGGGCCCTAAAACAATTGTTGACTTACACATTGAAAATCTCTTGTTGCAATGAGTATATGTTTCTTGTGTTTAGGTACCCCACCACTTCACACCTCTTTTTCCTCTTTATTCATATAAATTTACTATAAAACATGAATATTTTACTTCTCTTTTATGTTTCATATGTTAAACACATGATGAATGATTTATAATGTAAATATCTTTGCAGTTTGGACTTGATCATACACTCACC</genome_strand>
        <mrna_strand>TTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATACACCTTCCGTTGTGTATACTACTAATCTTGCTTCCAG.......................................................................................................................................................................................GCAGGATATGTTCACACTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAG...................................................................................................................................................................................................................................................................................................................AGTGACTCTTGCTGATCAAACTACTTATGATGCAAAAGTTGTTGGATTTGACCAAGATAAAGATGTTGCTGTGTTGCATATTGATGCACCAAAAGACAAGTTGCGACCTATACCAATTGGCGTATCGGCAGACTTGCTCGTTGGTCAAAAAGTATTTGCTATTGGAAATCCAGTATGTGACGAAATACAAACCTGCTAGAGAATTCTGTTCAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGACTTGATCATACACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E418571" ref_strand="+" ref_description="SGN-E418571 [STM-27-H10]">
      <seq>ctgctctaaacaagtcagctctcggcagctgtcttcttaacaatggctgcatcttcacactccttagcttcttctgcttgcttctccacaactccgacgcggaaaatttccggctcagatcgatttcaacttgctaagtctatactctgccggaaaatacctggtttcgccggcagtgtggtctgtgctcggcgtatttgctctaactatgcctcttccgatgaccagtccaactacaggaagaatcttatggatagtatttttgtggcatgcacttccgttgccttgtctttttctctctatatagcagacgttgaccctgcctccgcttttgtagtcacttcacccaggaaattgcagactgatgaacttgctactgttcgcctcttccaggagaatacaccttccggtgtgtatattactaatcttgcttccaggcaggatatgtttacattggatgtatttgaggtgcctcaagggtctgggtcaggcttcgtctgggataaaaatggaaatattgttactaattatcatgtgattcgaggggcttctgatctcagagtgactctngctgatcaaactacttatgatgcaaaaagtgttggatttgaccaagataaagatgttgctgtattgcatatcgatgcaccaaaagacaagttgcgacctataccaattggcgtatctgcagacttgctcgttggtcaaaaagtatttgctattggaaatccatttggacttgatcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="23294" stop="20750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22986" g_stop="22575" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="437" r_length="412" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22574" i_stop="22392" i_length="183">
            <donor d_prob="0.964" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22391" g_stop="22269" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="560" r_length="123" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22268" i_stop="21962" i_length="307">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21961" g_stop="21790" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="732" r_length="172" r_score="0.965"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21789" i_stop="21066" i_length="724">
            <donor d_prob="0.928" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21065" g_stop="21050" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="733" r_stop="748" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E418571" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E418571" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22986" e_stop="22575"/>
          <exon e_start="22391" e_stop="22269"/>
          <exon e_start="21961" e_stop="21790"/>
          <exon e_start="21065" e_stop="21050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTGTCTTCTTAACAATGGCTGCATCTTCACACTCCCTAGCTTCTTCTGCTTGCTTCTCCACAACTCCGGCACGGAAATTTTCCGGCTCAGATCGATTTCAACTTGCTAAGTCTTTACTCTGCCGGAAAATACCTGGTTTCTCCGGCAGTGTGGTCTGCGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGGTGACCAGTCCAACTACGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAGGTGATCTATCAATGAGGATGGTCCTTTTTTTTTTTTCCTTATATGTTAGTAATTCACGTGCATTTGAGTTTGTAGATATAGTGCTAGATGAAAGTCTGCTAGATGTATTTCCTGTTATTGTAATTGCCGTCCACCTTTGTTTTTCCGGTTTGGTTAATTTGGATTCCGTTTGTGATATAATAGGCAGGATATGTTCACACTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAGGTGAGTTAATTGGCAACTGGAAACACATTTTTCTGATTTAAACAAGTTTCTATTTATTAGTATCTGCCTAAATGATTTCAGTTTCAAGTTCCTTGCCACAGTCCTCATATTATTTCTATATGCTATCTGACTGCTCTTATACTAGCATGATTCTACAACTTCGATTGTCTTAGCTAATCGTGGAGTATTAGGAAACCTGCAATTTTTTTCATGATATGAATTTGTTTGGATTGAACAGTCTGTTAGTTGCTTAATTATGGTTTTACGCTCTAATTGCTAGTACTAATATAGTCTTAGTCTTGCTCAGAGTGACTCTTGCTGATCAAACTACTTATGATGCAAAAGTTGTTGGATTTGACCAAGATAAAGATGTTGCTGTGTTGCATATTGATGCACCAAAAGACAAGTTGCGACCTATACCAATTGGCGTATCGGCAGACTTGCTCGTTGGTCAAAAAGTATTTGCTATTGGAAATCCAGTATGTGACGAAATACAAACCTGCTAGAGAATTCTGTTCATGTAATAATAGTACTTTTATCTGCTCTGTTGTCCCTTCTCTAAACCTAGTTTGAGCCATTCTATATTCAGCTTTCGCTTTAGAGGAAAACTATCGTCTTGCAGGCGTTCATGAGCATTACAACAATTAGAAAGTATTAATTTGCATATAGAATGCTAGTGCATTTTGTTATCAATAAAATTTGTGCAAGTAAGGAAAAAAACCAACTGACAGCGAGTAAGGAAAAAAAACAACTGATAGCAAGTACAACTTAGTTCAGTCTTCTGGTTCAACTGCTTGCTTGTAAGCGCACCTTCTTCTCCAGCTAAAGAATCAGTATCTGAAAGTTGGCTGTTACTTCTGAACATTCATCGCCTGCTAATATTTTTAACTGCTTCTTTTCCCATTAGTTTAAAGCATAACAATTCCCCCCCTGTAGTGCTCCAACTTCTGCCAAAATGTGTCACTGACTTGCACTTAAATCAAATTACTTTTTAAGGGCCCTAAAACAATTGTTGACTTACACATTGAAAATCTCTTGTTGCAATGAGTATATGTTTCTTGTGTTTAGGTACCCCACCACTTCACACCTCTTTTTCCTCTTTATTCATATAAATTTACTATAAAACATGAATATTTTACTTCTCTTTTATGTTTCATATGTTAAACACATGATGAATGATTTATAATGTAAATATCTTTGCAGTTTGGACTTGATCATA</genome_strand>
        <mrna_strand>CAGCTGTCTTCTTAACAATGGCTGCATCTTCACACTCCTTAGCTTCTTCTGCTTGCTTCTCCACAACTCCGACGCGGAAAATTTCCGGCTCAGATCGATTTCAACTTGCTAAGTCTATACTCTGCCGGAAAATACCTGGTTTCGCCGGCAGTGTGGTCTGTGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGATGACCAGTCCAACTACAGGAAGAATCTTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTTTCTCTCTATATAGCAGACGTTGACCCTGCCTCCGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGCCTCTTCCAGGAGAATACACCTTCCGGTGTGTATATTACTAATCTTGCTTCCAG.......................................................................................................................................................................................GCAGGATATGTTTACATTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGGGCTTCTGATCTCAG...................................................................................................................................................................................................................................................................................................................AGTGACTCTNGCTGATCAAACTACTTATGATGCAAAAAGTGTTGGATTTGACCAAGATAAAGATGTTGCTGTATTGCATATCGATGCACCAAAAGACAAGTTGCGACCTATACCAATTGGCGTATCTGCAGACTTGCTCGTTGGTCAAAAAGTATTTGCTATTGGAAATCCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGACTTGATCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E332335" ref_strand="+" ref_description="SGN-E332335 [cTOD-17-D14]">
      <seq>tcctctttgctctcaccagttgtcttcttaacaatggctgcatcttcacactccctagcttcttctgcttgcttctccacaactccggcacggaaattttccggctcagatcgatttcaacttgctaagtctttactctgccggaaaatacctggtttctccggcagtgtggtctgcgctcggcgtatttgctctaactatgcctcttccggtgaccagtccaactacgggaagaagcttatggatagtatttttgtggcatgcacttccgttgccttgtctttctctctctatatagcagacgttgaccctgcctcggcttttgtagtcacttcacccaggaaattgcagactgatgaacttgctactgttcgtctcttccaagagaatacaccttccgttgtgtatattactaatcttgcttccaggcaggatatgttcacactggatgtatttgaggtgcctcaagggtctgggtcaggcttcgtctgggataaaaatggaaatattgttactaattatcatgtgattcgaggtgcttctgatctcagagtgactcttgctgatcaaactacttatgatgcaaaagttgttggatttgaccaagataaagatngtgctgtgttgcatattgatgcacaaaagacaagttgcgacctataccaattggcgtatcggcagacttgctcgttggtcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="23302" stop="21512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23002" g_stop="22575" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22574" i_stop="22392" i_length="183">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22391" g_stop="22269" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="551" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22268" i_stop="21962" i_length="307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21961" g_stop="21812" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="700" r_length="149" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E332335" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332335" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23002" e_stop="22575"/>
          <exon e_start="22391" e_stop="22269"/>
          <exon e_start="21961" e_stop="21812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCTTTGCTCTCACCAGTTGTCTTCTTAACAATGGCTGCATCTTCACACTCCCTAGCTTCTTCTGCTTGCTTCTCCACAACTCCGGCACGGAAATTTTCCGGCTCAGATCGATTTCAACTTGCTAAGTCTTTACTCTGCCGGAAAATACCTGGTTTCTCCGGCAGTGTGGTCTGCGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGGTGACCAGTCCAACTACGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAGGTGATCTATCAATGAGGATGGTCCTTTTTTTTTTTTCCTTATATGTTAGTAATTCACGTGCATTTGAGTTTGTAGATATAGTGCTAGATGAAAGTCTGCTAGATGTATTTCCTGTTATTGTAATTGCCGTCCACCTTTGTTTTTCCGGTTTGGTTAATTTGGATTCCGTTTGTGATATAATAGGCAGGATATGTTCACACTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAGGTGAGTTAATTGGCAACTGGAAACACATTTTTCTGATTTAAACAAGTTTCTATTTATTAGTATCTGCCTAAATGATTTCAGTTTCAAGTTCCTTGCCACAGTCCTCATATTATTTCTATATGCTATCTGACTGCTCTTATACTAGCATGATTCTACAACTTCGATTGTCTTAGCTAATCGTGGAGTATTAGGAAACCTGCAATTTTTTTCATGATATGAATTTGTTTGGATTGAACAGTCTGTTAGTTGCTTAATTATGGTTTTACGCTCTAATTGCTAGTACTAATATAGTCTTAGTCTTGCTCAGAGTGACTCTTGCTGATCAAACTACTTATGATGCAAAAGTTGTTGGATTTGACCAAGATAAAGATGTTGCTGTGTTGCATATTGATGCACCAAAAGACAAGTTGCGACCTATACCAATTGGCGTATCGGCAGACTTGCTCGTTGGTCAAAA</genome_strand>
        <mrna_strand>TCCTCTTTGCTCTCACCAGTTGTCTTCTTAACAATGGCTGCATCTTCACACTCCCTAGCTTCTTCTGCTTGCTTCTCCACAACTCCGGCACGGAAATTTTCCGGCTCAGATCGATTTCAACTTGCTAAGTCTTTACTCTGCCGGAAAATACCTGGTTTCTCCGGCAGTGTGGTCTGCGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGGTGACCAGTCCAACTACGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAG.......................................................................................................................................................................................GCAGGATATGTTCACACTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAG...................................................................................................................................................................................................................................................................................................................AGTGACTCTTGCTGATCAAACTACTTATGATGCAAAAGTTGTTGGATTTGACCAAGATAAAGATNGTGCTGTGTTGCATATTGATGCA-CAAAAGACAAGTTGCGACCTATACCAATTGGCGTATCGGCAGACTTGCTCGTTGGTCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E249718" ref_strand="+" ref_description="SGN-E249718 [cLEF-56-N10]">
      <seq>cttcttaacaatggctgcatcttcacactccctagcttctgctgcttgcttctccacaactccggcacggaaattttccggctcagatcgatttcaacttgctaagtctttactctgccggaaaatacctggtttctccggcagtgtggtctgcgctcggcgtatttgctctaactatgcctcttccggtgaccagtccaactacgggaagaagcttatggatagtatttttgtggcatgcacttccgttgccttgtctttctctctctatatagcagacgttgaccctgcctcggcttttgtagtcacttcacccaggaaattgcagactgatgaacttgctactgttcgtctcttccaagagaatacaccttccgttgtgtatattactaatcttgcttccaggcaggatatgttcacactggatgtatttgaggtgcctcaagggtctgggtcaagcttcgtctgggataaaaatggaaatattgttactaattatcatgtgattcgaggtgcttctgatctcagagtgactcttgctgatcaaactacttatgatgcaaaagttgttggatttgaccaagataaagatgttgctgtgttgcatattgatgcaccaaaagacaagttgcgacctataccaattggcgtatcggcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="23279" stop="21531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22979" g_stop="22575" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22574" i_stop="22392" i_length="183">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22391" g_stop="22269" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="528" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22268" i_stop="21962" i_length="307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21961" g_stop="21831" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="659" r_length="131" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E249718" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22979" e_stop="22575"/>
          <exon e_start="22391" e_stop="22269"/>
          <exon e_start="21961" e_stop="21831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTAACAATGGCTGCATCTTCACACTCCCTAGCTTCTTCTGCTTGCTTCTCCACAACTCCGGCACGGAAATTTTCCGGCTCAGATCGATTTCAACTTGCTAAGTCTTTACTCTGCCGGAAAATACCTGGTTTCTCCGGCAGTGTGGTCTGCGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGGTGACCAGTCCAACTACGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAGGTGATCTATCAATGAGGATGGTCCTTTTTTTTTTTTCCTTATATGTTAGTAATTCACGTGCATTTGAGTTTGTAGATATAGTGCTAGATGAAAGTCTGCTAGATGTATTTCCTGTTATTGTAATTGCCGTCCACCTTTGTTTTTCCGGTTTGGTTAATTTGGATTCCGTTTGTGATATAATAGGCAGGATATGTTCACACTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAGGTGAGTTAATTGGCAACTGGAAACACATTTTTCTGATTTAAACAAGTTTCTATTTATTAGTATCTGCCTAAATGATTTCAGTTTCAAGTTCCTTGCCACAGTCCTCATATTATTTCTATATGCTATCTGACTGCTCTTATACTAGCATGATTCTACAACTTCGATTGTCTTAGCTAATCGTGGAGTATTAGGAAACCTGCAATTTTTTTCATGATATGAATTTGTTTGGATTGAACAGTCTGTTAGTTGCTTAATTATGGTTTTACGCTCTAATTGCTAGTACTAATATAGTCTTAGTCTTGCTCAGAGTGACTCTTGCTGATCAAACTACTTATGATGCAAAAGTTGTTGGATTTGACCAAGATAAAGATGTTGCTGTGTTGCATATTGATGCACCAAAAGACAAGTTGCGACCTATACCAATTGGCGTATCGGCAG</genome_strand>
        <mrna_strand>CTTCTTAACAATGGCTGCATCTTCACACTCCCTAGCTTCTGCTGCTTGCTTCTCCACAACTCCGGCACGGAAATTTTCCGGCTCAGATCGATTTCAACTTGCTAAGTCTTTACTCTGCCGGAAAATACCTGGTTTCTCCGGCAGTGTGGTCTGCGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGGTGACCAGTCCAACTACGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAG.......................................................................................................................................................................................GCAGGATATGTTCACACTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAAGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAG...................................................................................................................................................................................................................................................................................................................AGTGACTCTTGCTGATCAAACTACTTATGATGCAAAAGTTGTTGGATTTGACCAAGATAAAGATGTTGCTGTGTTGCATATTGATGCACCAAAAGACAAGTTGCGACCTATACCAATTGGCGTATCGGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E406320" ref_strand="+" ref_description="SGN-E406320 [PPI-3-M18]">
      <seq>tttcaacttgctaagtccacactctgccggaaaacacctggtttcgccggcagtgtggtctgtgctcggcgtatttgctctaacctatgcatcttccgatgacccagtccaacctaccaggaagaatcttatggatagtatttttgtggcatgcaccttccgttgccttgtctttttctctcttatatagcagacgttgaccctgcctcggcttttgtagtcacttcacccaggaaattgcagaactgatgaacttgctactgttcgcctcttccaggagaatacaccttccgttgtgtatattactaatcttgcttccaggcaggatatgtttacattggatgtatttgaggtgcctcaagggtctgggtcaggcttcgtctgggataaaaatggaaatattgttactaattatcatgtgattcgaggtgcctctgatctcagagtgactcttgctgatcaaactacttatgatgcaaaagttgttggnatttgaccaagataaagatgtttgctgtattgcatatcgatgcaccaaaagacaaagtgcgacctataccaattggcgtatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="23168" stop="21536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22888" g_stop="22575" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22574" i_stop="22392" i_length="183">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22391" g_stop="22269" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="444" r_length="123" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22268" i_stop="21962" i_length="307">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21961" g_stop="21834" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="574" r_length="130" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E406320" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E406320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22888" e_stop="22575"/>
          <exon e_start="22391" e_stop="22269"/>
          <exon e_start="21961" e_stop="21834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAACTTGCTAAGTCTTTACTCTGCCGGAAAATACCTGGTTTCTCCGGCAGTGTGGTCTGCGCTCGGCGTATTTGCTCTAAC-TATGCCTCTTCCGGTGA-CCAGTCCAA-CTA-CGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCA-CTTCCGTTGCCTTGTCTTTCTCTCTC-TATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAG-ACTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAGGTGATCTATCAATGAGGATGGTCCTTTTTTTTTTTTCCTTATATGTTAGTAATTCACGTGCATTTGAGTTTGTAGATATAGTGCTAGATGAAAGTCTGCTAGATGTATTTCCTGTTATTGTAATTGCCGTCCACCTTTGTTTTTCCGGTTTGGTTAATTTGGATTCCGTTTGTGATATAATAGGCAGGATATGTTCACACTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAGGTGAGTTAATTGGCAACTGGAAACACATTTTTCTGATTTAAACAAGTTTCTATTTATTAGTATCTGCCTAAATGATTTCAGTTTCAAGTTCCTTGCCACAGTCCTCATATTATTTCTATATGCTATCTGACTGCTCTTATACTAGCATGATTCTACAACTTCGATTGTCTTAGCTAATCGTGGAGTATTAGGAAACCTGCAATTTTTTTCATGATATGAATTTGTTTGGATTGAACAGTCTGTTAGTTGCTTAATTATGGTTTTACGCTCTAATTGCTAGTACTAATATAGTCTTAGTCTTGCTCAGAGTGACTCTTGCTGATCAAACTACTTATGATGCAAAAGTTGTTGG-ATTTGACCAAGATAAAGATG-TTGCTGTGTTGCATATTGATGCACCAAAAGACAAGTTGCGACCTATACCAATTGGCGTATCGG</genome_strand>
        <mrna_strand>TTTCAACTTGCTAAGTCCACACTCTGCCGGAAAACACCTGGTTTCGCCGGCAGTGTGGTCTGTGCTCGGCGTATTTGCTCTAACCTATGCATCTTCCGATGACCCAGTCCAACCTACCAGGAAGAATCTTATGGATAGTATTTTTGTGGCATGCACCTTCCGTTGCCTTGTCTTTTTCTCTCTTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGAACTGATGAACTTGCTACTGTTCGCCTCTTCCAGGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAG.......................................................................................................................................................................................GCAGGATATGTTTACATTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCCTCTGATCTCAG...................................................................................................................................................................................................................................................................................................................AGTGACTCTTGCTGATCAAACTACTTATGATGCAAAAGTTGTTGGNATTTGACCAAGATAAAGATGTTTGCTGTATTGCATATCGATGCACCAAAAGACAAAGTGCGACCTATACCAATTGGCGTATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E276746" ref_strand="+" ref_description="SGN-E276746 [cLEN-14-J8]">
      <seq>tctgcgctcggcgtatttgctctaactatgcctcttccggtgaccagtccaactacgggaagaagcttatggatagtatttttgtggcatgcacttccgttgccttgtctttctctctctatatagcagacgttgaccctgcctcggcttttgtagtcacttcacccaggaaattgcagactgatgaacttgctactgttcgtctcttccaagagaatacaccttccgttgtgtatattactaatcttgcttccaggcaggatatgttcacactggatgtatttgaggtgcctcaagggtctgggtcacgcttcgtctgggataaaaatggaaatattgttactaattatcatgtgattcgaggtgcttctgatctcagagtgactcttgctgatcaaactacttatgatgcaaaagttgttggatttgaccaagataaagatgttgctgtgttgcatattgatgcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="23130" stop="21572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22830" g_stop="22575" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22574" i_stop="22392" i_length="183">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22391" g_stop="22269" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="379" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22268" i_stop="21962" i_length="307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21961" g_stop="21872" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="469" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E276746" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276746" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22830" e_stop="22575"/>
          <exon e_start="22391" e_stop="22269"/>
          <exon e_start="21961" e_stop="21872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGCGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGGTGACCAGTCCAACTACGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAGGTGATCTATCAATGAGGATGGTCCTTTTTTTTTTTTCCTTATATGTTAGTAATTCACGTGCATTTGAGTTTGTAGATATAGTGCTAGATGAAAGTCTGCTAGATGTATTTCCTGTTATTGTAATTGCCGTCCACCTTTGTTTTTCCGGTTTGGTTAATTTGGATTCCGTTTGTGATATAATAGGCAGGATATGTTCACACTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAGGTGAGTTAATTGGCAACTGGAAACACATTTTTCTGATTTAAACAAGTTTCTATTTATTAGTATCTGCCTAAATGATTTCAGTTTCAAGTTCCTTGCCACAGTCCTCATATTATTTCTATATGCTATCTGACTGCTCTTATACTAGCATGATTCTACAACTTCGATTGTCTTAGCTAATCGTGGAGTATTAGGAAACCTGCAATTTTTTTCATGATATGAATTTGTTTGGATTGAACAGTCTGTTAGTTGCTTAATTATGGTTTTACGCTCTAATTGCTAGTACTAATATAGTCTTAGTCTTGCTCAGAGTGACTCTTGCTGATCAAACTACTTATGATGCAAAAGTTGTTGGATTTGACCAAGATAAAGATGTTGCTGTGTTGCATATTGATGCACC</genome_strand>
        <mrna_strand>TCTGCGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGGTGACCAGTCCAACTACGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAG.......................................................................................................................................................................................GCAGGATATGTTCACACTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCACGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAG...................................................................................................................................................................................................................................................................................................................AGTGACTCTTGCTGATCAAACTACTTATGATGCAAAAGTTGTTGGATTTGACCAAGATAAAGATGTTGCTGTGTTGCATATTGATGCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284320" ref_strand="+" ref_description="SGN-E284320 [cLER-16-L12]">
      <seq>tttgctctcaccagttgtcttcttaacaatggctgcatcttcacactccctagcttcttctgcttgcttctccacaactccggcacggaaattttccggctcagatcgatttcaacttgctaagtctttactctgccggaaaatacctggtttctccggcagtgtggtctgcgctcggcgtatttgctctaactatgcctcttccggtgaccagtccaactacgggaagaagcttatggatagtatttttgtggcatgcacttccgatgccttgtctttctctctctatatagcagacgttgaccctgcctcggcttttgtagtcacttcacccaggaaattgcagactgatgaacttgctactgttcgtctcttccaagagaatacaccttccgttgtgtatattactaatcttgcttccaggcaggatatgttcacactggatgtatttgaggtgcctcaagggtctgggtcaggcttcgtctgggataaaaatggaaatattgttactaattatcatgtgattcgaggtgcttctgatctcagtcttgctcagagtgactcttgctgatcaaactacttatgatgcaaaagttgttggatttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="23297" stop="21610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22997" g_stop="22575" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="423" r_length="423" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22574" i_stop="22392" i_length="183">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22391" g_stop="22269" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="546" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22268" i_stop="21972" i_length="297">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21971" g_stop="21910" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="608" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E284320" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22997" e_stop="22575"/>
          <exon e_start="22391" e_stop="22269"/>
          <exon e_start="21971" e_stop="21910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTCTCACCAGTTGTCTTCTTAACAATGGCTGCATCTTCACACTCCCTAGCTTCTTCTGCTTGCTTCTCCACAACTCCGGCACGGAAATTTTCCGGCTCAGATCGATTTCAACTTGCTAAGTCTTTACTCTGCCGGAAAATACCTGGTTTCTCCGGCAGTGTGGTCTGCGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGGTGACCAGTCCAACTACGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAGGTGATCTATCAATGAGGATGGTCCTTTTTTTTTTTTCCTTATATGTTAGTAATTCACGTGCATTTGAGTTTGTAGATATAGTGCTAGATGAAAGTCTGCTAGATGTATTTCCTGTTATTGTAATTGCCGTCCACCTTTGTTTTTCCGGTTTGGTTAATTTGGATTCCGTTTGTGATATAATAGGCAGGATATGTTCACACTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAGGTGAGTTAATTGGCAACTGGAAACACATTTTTCTGATTTAAACAAGTTTCTATTTATTAGTATCTGCCTAAATGATTTCAGTTTCAAGTTCCTTGCCACAGTCCTCATATTATTTCTATATGCTATCTGACTGCTCTTATACTAGCATGATTCTACAACTTCGATTGTCTTAGCTAATCGTGGAGTATTAGGAAACCTGCAATTTTTTTCATGATATGAATTTGTTTGGATTGAACAGTCTGTTAGTTGCTTAATTATGGTTTTACGCTCTAATTGCTAGTACTAATATAGTCTTAGTCTTGCTCAGAGTGACTCTTGCTGATCAAACTACTTATGATGCAAAAGTTGTTGGATTTGAC</genome_strand>
        <mrna_strand>TTTGCTCTCACCAGTTGTCTTCTTAACAATGGCTGCATCTTCACACTCCCTAGCTTCTTCTGCTTGCTTCTCCACAACTCCGGCACGGAAATTTTCCGGCTCAGATCGATTTCAACTTGCTAAGTCTTTACTCTGCCGGAAAATACCTGGTTTCTCCGGCAGTGTGGTCTGCGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGGTGACCAGTCCAACTACGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCACTTCCGATGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAG.......................................................................................................................................................................................GCAGGATATGTTCACACTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAG.........................................................................................................................................................................................................................................................................................................TCTTGCTCAGAGTGACTCTTGCTGATCAAACTACTTATGATGCAAAAGTTGTTGGATTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E291953" ref_strand="+" ref_description="SGN-E291953 [cLET-7-E4]">
      <seq>ttgctctcaccagttgtcttcttaacaatggctgcatcttcacactccctagcttcttctgcttgcttctccacaactccggcacggaaattttccggctcagatcgatttcaacttgctaagtctttactctgccggaaaatacctggattctccggcagtgaggtctgcgctcggcgtatttgctctaactatgcctcttccggtgaccagtccaactacgggaagaagctcatggatagcatttttgtggcatgcacttccagtgccttgtctttctctctctatatagcagacgttgaccctgcctcggcttttgtagtcacttcacccaggaaattgcagactgatgaacttgctactgttcgtctcttccaagagaatacaccttccggtgtgcatattactaatcttgcttccaggcaggatatgttcacactggatgtatttgacgtgcctcaagggtctgggtcacgcttcgtctgggataaaaatggaaatattgttactaattatcatgtgattcgaggtgcttctgatctcagagtgactcttgctgatcaaactacttatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="23296" stop="21630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22996" g_stop="22575" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22574" i_stop="22392" i_length="183">
            <donor d_prob="0.964" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22391" g_stop="22269" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="545" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22268" i_stop="21962" i_length="307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21961" g_stop="21930" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="577" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E291953" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291953" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22996" e_stop="22575"/>
          <exon e_start="22391" e_stop="22269"/>
          <exon e_start="21961" e_stop="21930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTCTCACCAGTTGTCTTCTTAACAATGGCTGCATCTTCACACTCCCTAGCTTCTTCTGCTTGCTTCTCCACAACTCCGGCACGGAAATTTTCCGGCTCAGATCGATTTCAACTTGCTAAGTCTTTACTCTGCCGGAAAATACCTGGTTTCTCCGGCAGTGTGGTCTGCGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGGTGACCAGTCCAACTACGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAGGTGATCTATCAATGAGGATGGTCCTTTTTTTTTTTTCCTTATATGTTAGTAATTCACGTGCATTTGAGTTTGTAGATATAGTGCTAGATGAAAGTCTGCTAGATGTATTTCCTGTTATTGTAATTGCCGTCCACCTTTGTTTTTCCGGTTTGGTTAATTTGGATTCCGTTTGTGATATAATAGGCAGGATATGTTCACACTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAGGTGAGTTAATTGGCAACTGGAAACACATTTTTCTGATTTAAACAAGTTTCTATTTATTAGTATCTGCCTAAATGATTTCAGTTTCAAGTTCCTTGCCACAGTCCTCATATTATTTCTATATGCTATCTGACTGCTCTTATACTAGCATGATTCTACAACTTCGATTGTCTTAGCTAATCGTGGAGTATTAGGAAACCTGCAATTTTTTTCATGATATGAATTTGTTTGGATTGAACAGTCTGTTAGTTGCTTAATTATGGTTTTACGCTCTAATTGCTAGTACTAATATAGTCTTAGTCTTGCTCAGAGTGACTCTTGCTGATCAAACTACTTATGATG</genome_strand>
        <mrna_strand>TTGCTCTCACCAGTTGTCTTCTTAACAATGGCTGCATCTTCACACTCCCTAGCTTCTTCTGCTTGCTTCTCCACAACTCCGGCACGGAAATTTTCCGGCTCAGATCGATTTCAACTTGCTAAGTCTTTACTCTGCCGGAAAATACCTGGATTCTCCGGCAGTGAGGTCTGCGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGGTGACCAGTCCAACTACGGGAAGAAGCTCATGGATAGCATTTTTGTGGCATGCACTTCCAGTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATACACCTTCCGGTGTGCATATTACTAATCTTGCTTCCAG.......................................................................................................................................................................................GCAGGATATGTTCACACTGGATGTATTTGACGTGCCTCAAGGGTCTGGGTCACGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAG...................................................................................................................................................................................................................................................................................................................AGTGACTCTTGCTGATCAAACTACTTATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E302347" ref_strand="+" ref_description="SGN-E302347 [cLEW-27-C20]">
      <seq>tttgctctcaccagttgtcttcttaacaatggctgcatcttcacactccctagcttcttctgcttgcttctccacaactccggcacggaaattttccggctcagatcgatttcaaccttgctaagtctttactctgccggaaaataccctggtttctccggcagtgtggtctgcgctcggcgtatttgctctaacctatgcctcttccggtgacccagtccaactacgggaagaagcttatggatagtatttttgtggcatgccaccttccgttgccttgtctttctctctctatatagcagacgttgacccctgcctcggcttttgtagtcacttcacccaggaaattgcagacctgatgaacttgctactgttcgtctcttccaagagaataccaccttccgttgtgtatattactaatcttgcttccaggcaggatatgttcacactggatgtatttgaggtgcctcaagggtctgggtcaggcttcgtctgggataaaaatggaaatattgttactaattatcatgtgattcgaggtgcttctgatctcagagtgactcttgctgatcaaactacttatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="23297" stop="21631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22997" g_stop="22575" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="432" r_length="432" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22574" i_stop="22392" i_length="183">
            <donor d_prob="0.964" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22391" g_stop="22269" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="555" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22268" i_stop="21962" i_length="307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21961" g_stop="21931" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="586" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E302347" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22997" e_stop="22575"/>
          <exon e_start="22391" e_stop="22269"/>
          <exon e_start="21961" e_stop="21931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTCTCACCAGTTGTCTTCTTAACAATGGCTGCATCTTCACACTCCCTAGCTTCTTCTGCTTGCTTCTCCACAACTCCGGCACGGAAATTTTCCGGCTCAGATCGATTTCAA-CTTGCTAAGTCTTTACTCTGCCGGAAAATA-CCTGGTTTCTCCGGCAGTGTGGTCTGCGCTCGGCGTATTTGCTCTAA-CTATGCCTCTTCCGGTGA-CCAGTCCAACTACGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATG-CA-CTTCCGTTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGA-CCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGA-CTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATA-CACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAGGTGATCTATCAATGAGGATGGTCCTTTTTTTTTTTTCCTTATATGTTAGTAATTCACGTGCATTTGAGTTTGTAGATATAGTGCTAGATGAAAGTCTGCTAGATGTATTTCCTGTTATTGTAATTGCCGTCCACCTTTGTTTTTCCGGTTTGGTTAATTTGGATTCCGTTTGTGATATAATAGGCAGGATATGTTCACACTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAGGTGAGTTAATTGGCAACTGGAAACACATTTTTCTGATTTAAACAAGTTTCTATTTATTAGTATCTGCCTAAATGATTTCAGTTTCAAGTTCCTTGCCACAGTCCTCATATTATTTCTATATGCTATCTGACTGCTCTTATACTAGCATGATTCTACAACTTCGATTGTCTTAGCTAATCGTGGAGTATTAGGAAACCTGCAATTTTTTTCATGATATGAATTTGTTTGGATTGAACAGTCTGTTAGTTGCTTAATTATGGTTTTACGCTCTAATTGCTAGTACTAATATAGTCTTAGTCTTGCTCAGAGTGACTCTTGCTGATCAAACTACTTATGAT</genome_strand>
        <mrna_strand>TTTGCTCTCACCAGTTGTCTTCTTAACAATGGCTGCATCTTCACACTCCCTAGCTTCTTCTGCTTGCTTCTCCACAACTCCGGCACGGAAATTTTCCGGCTCAGATCGATTTCAACCTTGCTAAGTCTTTACTCTGCCGGAAAATACCCTGGTTTCTCCGGCAGTGTGGTCTGCGCTCGGCGTATTTGCTCTAACCTATGCCTCTTCCGGTGACCCAGTCCAACTACGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCCACCTTCCGTTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACCTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATACCACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAG.......................................................................................................................................................................................GCAGGATATGTTCACACTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAG...................................................................................................................................................................................................................................................................................................................AGTGACTCTTGCTGATCAAACTACTTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E621090" ref_strand="+" ref_description="SGN-E621090 [71797]">
      <seq>gcttctccacaactccgacacggaaaattccggctcagatcgatttcaacttgctaagtctatactctgccggaaaatacctggtttcgccggcagtgtggtctgtgctcggcgtatgtgctctaattatgcctcttccgatgaccagtccaactacaggaagaagcttatggatagtatttttgtggcatgcacttccgttgccttgtctttttctctctatatagcagacgttgaccctgcctcggcttttgtagtcacttcacccaggaaattgcagactgatgaacttgctactgttcgcctcttccaggagaatacaccttccgttgtgtatattactaatcttgcttccaggcaggatatgtttacattggatgtatttgaggtgcctcaagggtctgggtcaggcttcgtctgggataaaaatggaaatattgttactaattatcatgtgattcgaggtgcctctgatctcagagtgactcttgctgaatcaaaatacttatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="23232" stop="21631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22932" g_stop="22575" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22574" i_stop="22392" i_length="183">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22391" g_stop="22269" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="480" r_length="123" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22268" i_stop="21962" i_length="307">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21961" g_stop="21931" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="512" r_length="32" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E621090" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E621090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22932" e_stop="22575"/>
          <exon e_start="22391" e_stop="22269"/>
          <exon e_start="21961" e_stop="21931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCTCCACAACTCCGGCACGGAAATTTTCCGGCTCAGATCGATTTCAACTTGCTAAGTCTTTACTCTGCCGGAAAATACCTGGTTTCTCCGGCAGTGTGGTCTGCGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGGTGACCAGTCCAACTACGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAGGTGATCTATCAATGAGGATGGTCCTTTTTTTTTTTTCCTTATATGTTAGTAATTCACGTGCATTTGAGTTTGTAGATATAGTGCTAGATGAAAGTCTGCTAGATGTATTTCCTGTTATTGTAATTGCCGTCCACCTTTGTTTTTCCGGTTTGGTTAATTTGGATTCCGTTTGTGATATAATAGGCAGGATATGTTCACACTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAGGTGAGTTAATTGGCAACTGGAAACACATTTTTCTGATTTAAACAAGTTTCTATTTATTAGTATCTGCCTAAATGATTTCAGTTTCAAGTTCCTTGCCACAGTCCTCATATTATTTCTATATGCTATCTGACTGCTCTTATACTAGCATGATTCTACAACTTCGATTGTCTTAGCTAATCGTGGAGTATTAGGAAACCTGCAATTTTTTTCATGATATGAATTTGTTTGGATTGAACAGTCTGTTAGTTGCTTAATTATGGTTTTACGCTCTAATTGCTAGTACTAATATAGTCTTAGTCTTGCTCAGAGTGACTCTTGCTG-ATCAAACTACTTATGAT</genome_strand>
        <mrna_strand>GCTTCTCCACAACTCCGACACGGAAA-ATTCCGGCTCAGATCGATTTCAACTTGCTAAGTCTATACTCTGCCGGAAAATACCTGGTTTCGCCGGCAGTGTGGTCTGTGCTCGGCGTATGTGCTCTAATTATGCCTCTTCCGATGACCAGTCCAACTACAGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTTTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGCCTCTTCCAGGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAG.......................................................................................................................................................................................GCAGGATATGTTTACATTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCCTCTGATCTCAG...................................................................................................................................................................................................................................................................................................................AGTGACTCTTGCTGAATCAAAATACTTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725724" ref_strand="+" ref_description="SGN-E725724 [LA05CA01]">
      <seq>gttgtcttcttaacaatggctgcatcttcacactccctagcttcttctgcttgcttctccacaactccggcacggaaattttccggctcagatcgatttcaacttgctaagtctttactctgccggaaaatacctggtttctccggcagtgtggtctgcgctcggcgtatttgctctaactatgcctcttccggtgaccagtccaactacgggaagaagcttatggatagtatttttgtggcatgcacttccgttgccttgtctttctctctctatatagcagacgttgaccctgcctcggcttttgtagtcacttcacccaggaaattgcagactgatgaacttgctactgttcgtctcttccaagagaatacaccttccgttgtgtatattactaatcttgcttccaggcaggatatgttcacactggatgtatttgaggtgcctcaagggtctgggtcaggcctcgtctgggataaaaatggaaatattgttactaattatcatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="23284" stop="21992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22984" g_stop="22575" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="410" r_length="410" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22574" i_stop="22392" i_length="183">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22391" g_stop="22292" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="510" r_length="100" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E725724" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725724" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22984" e_stop="22575"/>
          <exon e_start="22391" e_stop="22292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTCTTCTTAACAATGGCTGCATCTTCACACTCCCTAGCTTCTTCTGCTTGCTTCTCCACAACTCCGGCACGGAAATTTTCCGGCTCAGATCGATTTCAACTTGCTAAGTCTTTACTCTGCCGGAAAATACCTGGTTTCTCCGGCAGTGTGGTCTGCGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGGTGACCAGTCCAACTACGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAGGTGATCTATCAATGAGGATGGTCCTTTTTTTTTTTTCCTTATATGTTAGTAATTCACGTGCATTTGAGTTTGTAGATATAGTGCTAGATGAAAGTCTGCTAGATGTATTTCCTGTTATTGTAATTGCCGTCCACCTTTGTTTTTCCGGTTTGGTTAATTTGGATTCCGTTTGTGATATAATAGGCAGGATATGTTCACACTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTG</genome_strand>
        <mrna_strand>GTTGTCTTCTTAACAATGGCTGCATCTTCACACTCCCTAGCTTCTTCTGCTTGCTTCTCCACAACTCCGGCACGGAAATTTTCCGGCTCAGATCGATTTCAACTTGCTAAGTCTTTACTCTGCCGGAAAATACCTGGTTTCTCCGGCAGTGTGGTCTGCGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGGTGACCAGTCCAACTACGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAG.......................................................................................................................................................................................GCAGGATATGTTCACACTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCCTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E442314" ref_strand="+" ref_description="SGN-E442314 [cSTA-32-P17]">
      <seq>ctgctctaaacaagtcagctctcggcagctgtcttcttaacaatggctgcatcttcacactccttagcttcttctgcttgcttctccacaactccgacgcggaaaatttccggctcagatcgatttcaacttgctaagtctatactctgccggaaaatacctggtttcgccggcagtgtggtctgtgctcggcgtatttgctctaactatgcctcttccgatgaccagtccaactacaggaagaatcttatggatagtatttttgtggcatgcacttccgttgccttgtctttttctctctatatagcagacgttgaccctgcctccgcttttgtagtcacttcacccaggaaattgcagactgatgaacttgctactgttcgcctcttccaggagaatacaccttccgttgtgtatattactaatcttgcttccaggcaggatatgtttacatctgatgtatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="23294" stop="22274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22986" g_stop="22575" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="437" r_length="412" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22574" i_stop="22392" i_length="183">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22391" g_stop="22363" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="466" r_length="29" r_score="0.862"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E442314" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E442314" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22986" e_stop="22575"/>
          <exon e_start="22391" e_stop="22363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTGTCTTCTTAACAATGGCTGCATCTTCACACTCCCTAGCTTCTTCTGCTTGCTTCTCCACAACTCCGGCACGGAAATTTTCCGGCTCAGATCGATTTCAACTTGCTAAGTCTTTACTCTGCCGGAAAATACCTGGTTTCTCCGGCAGTGTGGTCTGCGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGGTGACCAGTCCAACTACGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAGGTGATCTATCAATGAGGATGGTCCTTTTTTTTTTTTCCTTATATGTTAGTAATTCACGTGCATTTGAGTTTGTAGATATAGTGCTAGATGAAAGTCTGCTAGATGTATTTCCTGTTATTGTAATTGCCGTCCACCTTTGTTTTTCCGGTTTGGTTAATTTGGATTCCGTTTGTGATATAATAGGCAGGATATGTTCACACTGGATGTATTTG</genome_strand>
        <mrna_strand>CAGCTGTCTTCTTAACAATGGCTGCATCTTCACACTCCTTAGCTTCTTCTGCTTGCTTCTCCACAACTCCGACGCGGAAAATTTCCGGCTCAGATCGATTTCAACTTGCTAAGTCTATACTCTGCCGGAAAATACCTGGTTTCGCCGGCAGTGTGGTCTGTGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGATGACCAGTCCAACTACAGGAAGAATCTTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTTTCTCTCTATATAGCAGACGTTGACCCTGCCTCCGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGCCTCTTCCAGGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAG.......................................................................................................................................................................................GCAGGATATGTTTACATCTGATGTATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E329180" ref_strand="+" ref_description="SGN-E329180 [cTOD-2-H23]">
      <seq>tctttgctctcaccagttgtcttcttaacaatggctgcatcttcacactccctagcttcttctgcttgcttctccacaactccggcacggaaattttccggctcagatcgatttcaacttgctaagtctttactctgccggaaaatacctggtttctccggcagtgtggtctgcgctcggcgtatttgctctaactatgcctcttccggtgaccagtccaactacgggaagaagcttatggatagtatttttgtggcatgcacttccgttgccttgtctttctctctctatatagcagacgttgaccctgcctcggcttttgtagtcacttcacccaggaaattgcagactgatgaacttgctactgttcgtctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="23299" stop="22325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22999" g_stop="22625" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E329180" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22999" e_stop="22625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTGCTCTCACCAGTTGTCTTCTTAACAATGGCTGCATCTTCACACTCCCTAGCTTCTTCTGCTTGCTTCTCCACAACTCCGGCACGGAAATTTTCCGGCTCAGATCGATTTCAACTTGCTAAGTCTTTACTCTGCCGGAAAATACCTGGTTTCTCCGGCAGTGTGGTCTGCGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGGTGACCAGTCCAACTACGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGTCTC</genome_strand>
        <mrna_strand>TCTTTGCTCTCACCAGTTGTCTTCTTAACAATGGCTGCATCTTCACACTCCCTAGCTTCTTCTGCTTGCTTCTCCACAACTCCGGCACGGAAATTTTCCGGCTCAGATCGATTTCAACTTGCTAAGTCTTTACTCTGCCGGAAAATACCTGGTTTCTCCGGCAGTGTGGTCTGCGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGGTGACCAGTCCAACTACGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278374" ref_strand="+" ref_description="SGN-E278374 [cLEL-2-P23](-)">
      <seq>agtgcatgccacaaaaatactatccataagcttcttcccgtagttggactggtcaccggaagaggcatagttagagcaaatacgccgagcgcagaccacactgccggagaaaccaggtattttccggcagagtaaagacttagcaagttgaaatcgatctgagccggaaaatttccgtgccggagttgtggaggaccaagcagaagaagctagggagctccgaagatgcagccattgttaagaagacaactggtgagaggcacgagctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="+" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="22436" stop="23295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22736" g_stop="23007" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="+" ref_id="SGN-E278374" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>272</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22736" e_stop="23007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGCATGCCACAAAAATACTATCCATAAGCTTCTTCCCGTAGTTGGACTGGTCACCGGAAGAGGCATAGTTAGAGCAAATACGCCGAGCGCAGACCACACTGCCGGAGAAACCAGGTATTTTCCGGCAGAGTAAAGACTTAGCAAGTTGAAATCGATCTGAGCCGGAAAATTTCCGTGCCGGAGTTGTGGAGAAGCAAGCAGAAGAAGCTAGGGAG-TGTGAAGATGCAGCCATTGTTAAGAAGACAACTGGTGAGAGCAAAGAGGAAGACC</genome_strand>
        <mrna_strand>AGTGCATGCCACAAAAATACTATCCATAAGCTTCTTCCCGTAGTTGGACTGGTCACCGGAAGAGGCATAGTTAGAGCAAATACGCCGAGCGCAGACCACACTGCCGGAGAAACCAGGTATTTTCCGGCAGAGTAAAGACTTAGCAAGTTGAAATCGATCTGAGCCGGAAAATTTCCGTGCCGGAGTTGTGGAGGACCAAGCAGAAGAAGCTAGGGAGCTCCGAAGATGCAGCCATTGTTAAGAAGACAACTGGTGAGAGGCACGAGCTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E439642" ref_strand="+" ref_description="SGN-E439642 [cSTA-12-P12]">
      <seq>gaggggtttatggacagctgtcttcttaacaatggctgcatcttcacactccttagcttcttctgcttgcttctccacaactccgacacggaaaatgtccggctcagatcgatttcaacttgctaagtctatactctgccggaaaatacctggtttcgccggcagtgtggtctgtgctcggcgtatttgctctaactatgcatcttccgatgaccagtccaactacaggaagaatcttatggatagtatttttgtggcatgcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="23286" stop="22437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22986" g_stop="22737" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="264" r_length="250" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E439642" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>250</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E439642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22986" e_stop="22737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTGTCTTCTTAACAATGGCTGCATCTTCACACTCCCTAGCTTCTTCTGCTTGCTTCTCCACAACTCCGGCACGGAAATTTTCCGGCTCAGATCGATTTCAACTTGCTAAGTCTTTACTCTGCCGGAAAATACCTGGTTTCTCCGGCAGTGTGGTCTGCGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGGTGACCAGTCCAACTACGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCAC</genome_strand>
        <mrna_strand>CAGCTGTCTTCTTAACAATGGCTGCATCTTCACACTCCTTAGCTTCTTCTGCTTGCTTCTCCACAACTCCGACACGGAAAATGTCCGGCTCAGATCGATTTCAACTTGCTAAGTCTATACTCTGCCGGAAAATACCTGGTTTCGCCGGCAGTGTGGTCTGTGCTCGGCGTATTTGCTCTAACTATGCATCTTCCGATGACCAGTCCAACTACAGGAAGAATCTTATGGATAGTATTTTTGTGGCATGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731998" ref_strand="+" ref_description="SGN-E731998 [LB01AA07]">
      <seq>cgatacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtaaaagatgtggccagtatactgcactggaagctcatgtagagacagagagatcgtcaagcaacaagaggattcccagatttaatctgttattcttgctcatgtagaccaaaaattggccataataatctacaaacactcttttcggctacaattatactaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="26329" stop="24842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26032" g_stop="25949" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="189" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25685" g_stop="25527" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="348" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25526" i_stop="25304" i_length="223">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25303" g_stop="25142" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="510" r_length="162" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="511" polyA_stop="524"/>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E731998" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26032" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25527"/>
          <exon e_start="25303" e_stop="25142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAAATACGTTTGTGGTGGGCTTTGGTAGGTAAAAGATGTGGCCAGTATACTGCACTGGAAGCTCATGTAGAGACAGAGAGATCGTCAAGCAACAAGAGGATTCCCAGATTTAATCTGTTATTCTTGCTCATGTAGACCAAAAATTGGCCATAATAATCTACAAACACTCTTTTCGGCTACAATTATACTA</genome_strand>
        <mrna_strand>CGAT-ACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCC...............................................................................................................................................................................................................................GTAAAAGATGTGGCCAGTATACTGCACTGGAAGCTCATGTAGAGACAGAGAGATCGTCAAGCAACAAGAGGATTCCCAGATTTAATCTGTTATTCTTGCTCATGTAGACCAAAAATTGGCCATAATAATCTACAAACACTCTTTTCGGCTACAATTATACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E732335" ref_strand="+" ref_description="SGN-E732335 [LB01DF01]">
      <seq>ccgctctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtaaaagatgtggccagtatactgcactggaagctcatgtagagacagagagatcgtcaagcaacaagaggattcccagatttaatctgttattcttgctcatgtagaccaaaaattggccataataatctacaaacactcttttcggctaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="26592" stop="24850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26384" g_stop="26375" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="0.700"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="127" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="267" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="373" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25685" g_stop="25527" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="532" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="25526" i_stop="25304" i_length="223">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="25303" g_stop="25151" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="685" r_length="153" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E732335" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732335" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26384" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25527"/>
          <exon e_start="25303" e_stop="25151"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAAATACGTTTGTGGTGGGCTTTGGTAGGTAAAAGATGTGGCCAGTATACTGCACTGGAAGCTCATGTAGAGACAGAGAGATCGTCAAGCAACAAGAGGATTCCCAGATTTAATCTGTTATTCTTGCTCATGTAGACCAAAAATTGGCCATAATAATCTACAAACACTCTTTTCGGCTACA</genome_strand>
        <mrna_strand>CCGCTCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCC...............................................................................................................................................................................................................................GTAAAAGATGTGGCCAGTATACTGCACTGGAAGCTCATGTAGAGACAGAGAGATCGTCAAGCAACAAGAGGATTCCCAGATTTAATCTGTTATTCTTGCTCATGTAGACCAAAAATTGGCCATAATAATCTACAAACACTCTTTTCGGCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E740588" ref_strand="+" ref_description="SGN-E740588 [LC22AD05]">
      <seq>atctaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttccttttttttttttttccccggacagtacttttgcttcccaaaaccaactgggtgtatgttgtttgtatgtattatgtatgtataaatcaaatatggaaaacccctctttgttatttttctaaaataaataaaagggaaactactttttgtaaaaatacttttggggggggctttggtaggaaaaaaatgtggccagtatactgcactggaacctcatgtaaaaacaaaaaaatcttcaaccaacaaaaggattcccaaatttaatctgttattcttgcccaggaaaaccaaaaattggccataataatctacaaacactcttttcggctnnnaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="26292" stop="24854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25992" g_stop="25949" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="150" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25685" g_stop="25151" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="686" r_length="536" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="687" polyA_stop="702"/>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E740588" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25992" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25151"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCC-TTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAAATACGTTTGTGGTGGGCTTTGGTAGGTAAAAGATGTGGCCAGTATACTGCACTGGAAGCTCATGTAGAGACAGAGAGATCGTCAAGCAACAAGAGGATTCCCAGATTTAATCTGTTATTCTTGCTCATGTAGACCAAAAATTGGCCATAATAATCTACAAACACTCTTTTCGGCTACA</genome_strand>
        <mrna_strand>ATCTAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTTCCCCGGACAGTACTTTTGCTTCCCAAAACCAACTGGGTGTATGTTGTTTGTATGTATTATGTATGTATAAATCAAATATGGAAAACCCCTCTTTGTTATTTTTCTAAAATAAATAAAAGGGAAACTACTTTTTGTAAAAATACTTTTGGGGGGGGCTTTGGTAGGAAAAAAATGTGGCCAGTATACTGCACTGGAACCTCATGTAAAAACAAAAAAATCTTCAACCAACAAAAGGATTCCCAAATTTAATCTGTTATTCTTGCCCAGGAAAACCAAAAATTGGCCATAATAATCTACAAACACTCTTTTCGGCTNNN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E732225" ref_strand="+" ref_description="SGN-E732225 [LB01CD10]">
      <seq>ctcttgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtaaaagatgtggccagtatactgcactggaagctcatgtagagacagagagatcgtcaagcaacaagaggattcccagatttaatctgttattcttgctcatgtagaccaaaaattggccataataatctacaaacactcttttcggctacaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="26283" stop="24845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25983" g_stop="25949" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="141" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25685" g_stop="25527" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="300" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25526" i_stop="25304" i_length="223">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25303" g_stop="25151" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="453" r_length="153" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="454" polyA_stop="467"/>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E732225" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25983" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25527"/>
          <exon e_start="25303" e_stop="25151"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAAATACGTTTGTGGTGGGCTTTGGTAGGTAAAAGATGTGGCCAGTATACTGCACTGGAAGCTCATGTAGAGACAGAGAGATCGTCAAGCAACAAGAGGATTCCCAGATTTAATCTGTTATTCTTGCTCATGTAGACCAAAAATTGGCCATAATAATCTACAAACACTCTTTTCGGCTACA</genome_strand>
        <mrna_strand>CTCTTGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCC...............................................................................................................................................................................................................................GTAAAAGATGTGGCCAGTATACTGCACTGGAAGCTCATGTAGAGACAGAGAGATCGTCAAGCAACAAGAGGATTCCCAGATTTAATCTGTTATTCTTGCTCATGTAGACCAAAAATTGGCCATAATAATCTACAAACACTCTTTTCGGCTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E295997" ref_strand="+" ref_description="SGN-E295997 [cLET-27-I8]">
      <seq>ttgtgagaaggaagctgagaacgttttacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagtaaaagatgtggccagtatactgcactggaagctcatgtagagacagagagatcgtcaagcaacaagaggattcccagatttaatctgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="25989" stop="24913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25775" g_stop="25766" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25685" g_stop="25552" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="144" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25551" i_stop="25304" i_length="248">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25303" g_stop="25213" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="235" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E295997" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>235</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25775" e_stop="25766"/>
          <exon e_start="25685" e_stop="25552"/>
          <exon e_start="25303" e_stop="25213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAAATACGTTTGTGGTGGGCTTTGGTAGGTAAAAGATGTGGCCAGTATACTGCACTGGAAGCTCATGTAGAGACAGAGAGATCGTCAAGCAACAAGAGGATTCCCAGATTTAATCTGTT</genome_strand>
        <mrna_strand>TTGTGAGAAG................................................................................GAAGCTGAGAACGTTTTACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGA........................................................................................................................................................................................................................................................GTAAAAGATGTGGCCAGTATACTGCACTGGAAGCTCATGTAGAGACAGAGAGATCGTCAAGCAACAAGAGGATTCCCAGATTTAATCTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E397296" ref_strand="+" ref_description="SGN-E397296 [TUS-45-G22](-)">
      <seq>ggagggaaagaatttgcacttcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatttgcttacgtatccatttgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttcctttttttttttttcgcctgacagtacttttgcttcgcaaaatcaactgtgtgtatgttgtttgtatgtattatgtatgtatgaatcaaatatggaagagcactcgttgttatatttctgaaataaataaaatggagactactttttgtataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="26107" stop="25026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25807" g_stop="25766" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25685" g_stop="25319" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="409" r_length="367" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E397296" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25807" e_stop="25766"/>
          <exon e_start="25685" e_stop="25319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAAATACGTTTGT</genome_strand>
        <mrna_strand>GGAGGGAAAGAATTTGCACTTCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATTTGCTTACGTATCCATTTGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E691066" ref_strand="+" ref_description="SGN-E691066 [LH_Ea05C08]">
      <seq>ccgttaagatgatacaaacccagccttatatggtgaactagccttgggccagagccctaagttcatggttttcgcgtgctctgactcacgagtgtgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacattgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgcggttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtgaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttggacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggatactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttcctttttttttttcgcctgacagtatttttgcttcgcaaaatcaactgtgtatgttgtttgtatgtattatgtatgtatgaatcaaatatggaagagcactcgttgttatatttctgaaataaataaaatggagactacttttggtataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="26722" stop="25026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26534" g_stop="26522" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="0.615"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="61" r_length="49" r_score="0.898"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="178" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="318" r_length="140" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="424" r_length="106" r_score="0.981"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="25685" g_stop="25320" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="786" r_length="362" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E691066" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E691066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26534" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAAATACGTTTG</genome_strand>
        <mrna_strand>CCGTTA-AGATGA..................................................................................................TACAAACCCAGCCTTATATGGTGAACTAGCCTTGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTGTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATTGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCGGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTGAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGGACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGATACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCC--TTTTTTTTTTTCGCCTGACAGTATTTTTGCTTCGCAAAATCAAC--TGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTGGTATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E297630" ref_strand="+" ref_description="SGN-E297630 [cLET-28-A24]">
      <seq>tgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttcctttttttttttttcgcctgacagtacttttgcttcgcaaaatcaactgtgtgtatgttgtttgtatgtattatgtatgtatgaatcaaatatggaagagcactcgttgttatatttctgaaataaataaaatggagactactttttgtataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="25869" stop="25026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25569" g_stop="25320" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E297630" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>250</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25569" e_stop="25320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAAATACGTTTG</genome_strand>
        <mrna_strand>TGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E691065" ref_strand="+" ref_description="SGN-E691065 [LH_Ea05C07]">
      <seq>tgaaatatgatacaaacccagccttatatggtgaactagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtgtgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacattgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgcggttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtgaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttggacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggatactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttcctttttttttttcgcctgacagtatttttgcttcgcaaaatcaactgtgtatgttgtttgtatgtattatgtatgtatgaatcaaatatggaagagcactcgttgttatatttctgaaataaataaaatggagactacttttggtataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="26722" stop="25026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26531" g_stop="26522" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="59" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="176" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="316" r_length="140" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="422" r_length="106" r_score="0.981"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="25685" g_stop="25321" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="783" r_length="361" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E691065" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E691065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26531" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAAATACGTTT</genome_strand>
        <mrna_strand>TGAAATATGA..................................................................................................TACAAACCCAGCCTTATATGGTGAACTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTGTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATTGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCGGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTGAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGGACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGATACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCC--TTTTTTTTTTTCGCCTGACAGTATTTTTGCTTCGCAAAATCAAC--TGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTGGTATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E734573" ref_strand="+" ref_description="SGN-E734573 [LB13AB03]">
      <seq>gcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttcctttttttttttttcccctgacagaacttttgcttcccaaaatcaactgggggaatgttgtttgaatgtattatgtatgtatgaatcaaatatggaaaaccactcgttgttatatttctgaaataaataaaatggaaactactttttgtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="26304" stop="13982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26004" g_stop="25949" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="162" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25685" g_stop="25321" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="527" r_length="365" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E734573" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26004" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAAATACGTTT</genome_strand>
        <mrna_strand>GCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCCCCTGACAGAACTTTTGCTTCCCAAAATCAACTGGGGGAATGTTGTTTGAATGTATTATGTATGTATGAATCAAATATGGAAAACCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAAACTACTTTTTGTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E734337" ref_strand="+" ref_description="SGN-E734337 [LB12BF05]">
      <seq>cttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttccttttttttttttttcccctgacagaacttttgcttcccaaaatcaactgggggaatgttgtttgaatgtattatgtatgtatgaatcaaatatggaaaacccctcgttgttatatttctgaaataaataaaagggaaactactttttgtataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="26303" stop="25026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26003" g_stop="25949" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="161" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25685" g_stop="25321" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="527" r_length="366" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E734337" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26003" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCC-TTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAAATACGTTT</genome_strand>
        <mrna_strand>CTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTTCCCCTGACAGAACTTTTGCTTCCCAAAATCAACTGGGGGAATGTTGTTTGAATGTATTATGTATGTATGAATCAAATATGGAAAACCCCTCGTTGTTATATTTCTGAAATAAATAAAAGGGAAACTACTTTTTGTATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E291224" ref_strand="+" ref_description="SGN-E291224 [cLET-2-M20]">
      <seq>cactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttcctttttttttttttcgcctgacagtacttttgcttcgcaaaatcaactgtgtgtatgttgtttgtatgtattatgtatgtatgaatcaaatatggaagagcactcgttgttatatttctgaaataaataaaatggagactactttttatataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="26276" stop="25026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25976" g_stop="25949" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="134" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25685" g_stop="25321" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="499" r_length="365" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E291224" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25976" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAAATACGTTT</genome_strand>
        <mrna_strand>CACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTATATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E372118" ref_strand="+" ref_description="SGN-E372118 [TUS-30-B12](-)">
      <seq>atggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttcctttttttttttttcgcctgacagtacttatgcttcgcaaaatcaactgtgtgtatgttgtttgtatgtattatgtatgtatgaatcaaatatggaagagcactcgttgttatatttctgaaataaataaaatggagtctacttctgatataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="26587" stop="25026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26287" g_stop="26174" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="254" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="360" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25685" g_stop="25322" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="724" r_length="364" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E372118" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26287" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAAATACGTT</genome_strand>
        <mrna_strand>ATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTATGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGTCTACTTCTGATATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E734692" ref_strand="+" ref_description="SGN-E734692 [LB13BD04]">
      <seq>gtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaaggctggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttcctttttttttttttccccggcaagaatttttgtttcccaaaatcaactgggggaatgtggtttgaatgtattatgtatgtataaatcaaatatggaaaagccctcgttgttatatttctgaaataaataaaatggaaactactttttgtataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="26491" stop="25026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26191" g_stop="26174" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="158" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="264" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25685" g_stop="25322" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="628" r_length="364" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E734692" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26191" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAAATACGTT</genome_strand>
        <mrna_strand>GTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGCTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCCCCGGCAAGAATTTTTGTTTCCCAAAATCAACTGGGGGAATGTGGTTTGAATGTATTATGTATGTATAAATCAAATATGGAAAAGCCCTCGTTGTTATATTTCTGAAATAAATAAAATGGAAACTACTTTTTGTATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E366177" ref_strand="+" ref_description="SGN-E366177 [cLPT-1-E15](-)">
      <seq>tcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtgaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttcctttttttggcctgacagtacttttgcttcgcaaaatcaactgtgtgtatgttgtttgtatgtattatgtatgtatgaatcaaatatggaagagcactcgttgttatatttctgaaataaataaaatggagactacttttggtataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="26344" stop="25026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26044" g_stop="25949" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="202" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25685" g_stop="25322" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="560" r_length="358" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E366177" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26044" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAAATACGTT</genome_strand>
        <mrna_strand>TCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTGAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCC------TTTTTTTGGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTGGTATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E287260" ref_strand="+" ref_description="SGN-E287260 [cLES-15-K1]">
      <seq>tcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttccttttttttttttcgcctgacagtacttttgcttcgcaaaatcaactgtgtgtatgttgtttgtatgtattatgtatgtatgaatcaaatatggaagagcactcgttgttatatttctgaaataaataaaatggagactactttttgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="25836" stop="25026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25536" g_stop="25323" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E287260" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>214</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25536" e_stop="25323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAAATACGT</genome_strand>
        <mrna_strand>TCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCC-TTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E694905" ref_strand="+" ref_description="SGN-E694905 [LH_Ea05C07](-)">
      <seq>cccatcccatgtcctcaacttccaacctggtgaggcaatcatggttcgtaacattgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgcggttcttcatattaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtgaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttggacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggatactatgatttcgtgaagggtggatttgagctgtggggacttgaattcaatctttctcctcctctttccctatnaacttaattcaattaccatttaaccctcacaatttccggcctttttttttttcccctgacagtatttttgcttcgcaaaatcaactntctatcttctttgtatgttttataagtgtatgaatcaaatatggaagagcactcgttgcttttattgtaaataaataaaatggagactacttttgtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="26555" stop="25026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26255" g_stop="26174" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="222" r_length="140" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="328" r_length="106" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25685" g_stop="25324" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="684" r_length="356" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E694905" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E694905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26255" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAAATACG</genome_strand>
        <mrna_strand>CCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCAATCATGGTTCGTAACATTGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCGGTTCTTCATATTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTGAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGGACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGATACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAATTCAATCTTTCTCCTCCTCTTTCCCTATNAACTTAATTCAATTACCATTTAACCCTCACAATTTCCGGCC--TTTTTTTTTTTCCCCTGACAGTATTTTTGCTTCGCAAAATCAAC--TNTCTATCTTCTTTGTATGTTTTATAAGTGTATGAATCAAATATGGAAGAGCACTCGTTGCTTTTATTGT-AAATAAATAAAATGGAGACTAC-TTTTGTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E734148" ref_strand="+" ref_description="SGN-E734148 [LB11DF07]">
      <seq>catctaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttcctttttttttttttcccctgacagaacttttgcttcccaaaatcaactgggggaatgttgtttgaatgtattatgtatgtataaatcaaatatggaaaacccctcgttgttatatttctgaaataaataaaatggaaactactttttgtataaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="26292" stop="25026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25993" g_stop="25949" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="151" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25685" g_stop="25324" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="513" r_length="362" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E734148" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25993" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAAATACG</genome_strand>
        <mrna_strand>CATCTAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCCCCTGACAGAACTTTTGCTTCCCAAAATCAACTGGGGGAATGTTGTTTGAATGTATTATGTATGTATAAATCAAATATGGAAAACCCCTCGTTGTTATATTTCTGAAATAAATAAAATGGAAACTACTTTTTGTATAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E694906" ref_strand="+" ref_description="SGN-E694906 [LH_Ea05C08](-)">
      <seq>gaaatatgatacaaacccagccttatatggtgaactagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtgtgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacattgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgcggttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtgaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttggacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggatactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttcctttttttttttcgcctgacagtatttttgcttcgcaaaatcaactgtgtatgttgtttgtatgtattatgtaggtatgaatcaaatatggaagagcacctcgttgttatatatgggaaataaataaaatggagactacttttggtataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="26722" stop="25026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26530" g_stop="26522" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="58" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="175" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="315" r_length="140" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="421" r_length="106" r_score="0.981"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="25685" g_stop="25329" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="775" r_length="354" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="776" polyA_stop="789"/>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E694906" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E694906" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26530" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCA-CTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAA</genome_strand>
        <mrna_strand>GAAATATGA..................................................................................................TACAAACCCAGCCTTATATGGTGAACTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTGTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATTGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCGGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTGAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGGACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGATACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCC--TTTTTTTTTTTCGCCTGACAGTATTTTTGCTTCGCAAAATCAAC--TGTGTATGTTGTTTGTATGTATTATGTAGGTATGAATCAAATATGGAAGAGCACCTCGTTGTTATATATGGGAAATAAATAAAATGGAGACTACTTTTGGTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E549262" ref_strand="+" ref_description="SGN-E549262 [TUS-68-M19](-)">
      <seq>ttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtcccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcgactgcctttattgaggattgggtgaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttggacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttccttttttttttccgcctgacagtatttttgcttcgcaaaatcaactgtgtatgttgtttgtatgtattatgtatgtatgaatcaaatatggaagagcactcgttgttatatttctgaaatgaataaaatggagactacttttggtataaaaaaaaaaaaaagaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="26536" stop="25026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26236" g_stop="26174" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="204" r_length="140" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.948" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="310" r_length="106" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25685" g_stop="25329" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="663" r_length="353" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="664" polyA_stop="681"/>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E549262" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26236" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGT-CCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAA</genome_strand>
        <mrna_strand>TTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCGAC.............................................................................TGCCTTTATTGAGGATTGGGTGAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGGACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCC--TTTTTTTTTTCCGCCTGACAGTATTTTTGCTTCGCAAAATCAAC--TGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATGAATAAAATGGAGACTACTTTTGGTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E224758" ref_strand="+" ref_description="SGN-E224758 [cLEL-27-I17](-)">
      <seq>aaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttcctttttttttttttcgcctgacagtacttttgcttcgcaaaatcaactgtgtgtatgttgtttgtatgtattatgtatgtatgaatcaaatatggaagagcactcgttgttatatttctgaaataaataaaatggagactacttttcctataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="26148" stop="25026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25848" g_stop="25766" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25685" g_stop="25329" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="440" r_length="357" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="441" polyA_stop="456"/>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E224758" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25848" e_stop="25766"/>
          <exon e_start="25685" e_stop="25329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAA</genome_strand>
        <mrna_strand>AAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTCCTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E365325" ref_strand="-" ref_description="SGN-E365325 [cLPT-2-B15]">
      <seq>atttgcacatcaatgcacagcttgtgaaaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtaaaaaaaacattggcattgaagggaggttactatgatttcgtaaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttcctttttttggccagacagtacttttgcttcgcaaaatcaactgtgtgtatgttgtttgtatgtattatgtatgtatgaatcaaatatggaagagcactcgttgttatatttctgaaataaataaaatggagactacttttggtataaaaaaaaaaaaaaaaaaaaaaaaactcgagactagttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="26096" stop="25026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25796" g_stop="25766" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25685" g_stop="25329" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="382" r_length="351" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="383" polyA_stop="406"/>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E365325" ref_strand="-">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365325" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="25796" e_stop="25766"/>
          <exon e_start="25685" e_stop="25329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAA</genome_strand>
        <mrna_strand>ATTTGCACATCAATGCACAGCTTGTGAAAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTAAAAAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTAAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCC------TTTTTTTGGCCAGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTGGTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E224538" ref_strand="+" ref_description="SGN-E224538 [cLEL-27-I17](-)">
      <seq>agggaggttactatgatttcgtaaagggtggatatcagctgtggggacttgagatcggtctttctcctcctctttcggtatggtcttaattcaatagccatttggccctcacaatttccttcctttttttttttttcgcctgacagtacttttgcttcgcaaaatcaactgtgtgtatgttgtttgtatgtattatgtatgtatcaatcatatatggtagagcacacgttgttatatttttgaaacaaatataatggagcctactttttgtataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="25903" stop="25026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25603" g_stop="25329" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="276" polyA_stop="291"/>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E224538" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>275</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25603" e_stop="25329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAA</genome_strand>
        <mrna_strand>AGGGAGGTTACTATGATTTCGTAAAGGGTGGATATCAGCTGTGGGGACTTGAGATCGGTCTTTCTCCTCCTCTTTCGGTATGGTCTTAATTCAATAGCCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATCAATCATATATGGTAGAGCACACGTTGTTATATTTTTGAAACAAATATAATGGAGCCTACTTTTTGTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E747061" ref_strand="+" ref_description="SGN-E747061 [GI|56562176]">
      <seq>ttgaaatgtaaggttcttggcttcttagccatatgatattaaggcaaaagtaagatacaacattgaatctccaacgtacaaacctcatctacaatggattgaagctctcatttgcttagccatcactttcaacattgtctattggattggttatatgtaagagttcaaaagcagcaataatcaagaacacatcactagctatactattactagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttccttttttttttttttcgcctgacagtacttttgcttcgcaaaatcaactgtgtgtatgttgtttgtatgtattatgtatgtatgaatcaaatatggaagagcactcgttgttatatttctgaaataaataaaatggagactactttttgtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="29047" stop="25031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28747" g_stop="28297" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="513" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="657" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="706" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="707" r_stop="823" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="824" r_stop="963" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="964" r_stop="1069" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="25685" g_stop="25331" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1070" r_stop="1425" r_length="356" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E747061" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1424</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28747" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAATGTAAGGTTCTTGGCTTCTTAGCCATATGATATTAAGGCAAAAGTAAGATACAACATTGAATCTCCAACGTACAAACCTCATCTACAATGGATTGAAGCTCTCATTTGCTTAGCCATCACTTTCAACATTGTCTATTGGATTGGTTATATGTAAGAGTTCAAAAGCAGCAATAATCAAGAACACATCACTAGCTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCC-TTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTAT</genome_strand>
        <mrna_strand>TTGAAATGTAAGGTTCTTGGCTTCTTAGCCATATGATATTAAGGCAAAAGTAAGATACAACATTGAATCTCCAACGTACAAACCTCATCTACAATGGATTGAAGCTCTCATTTGCTTAGCCATCACTTTCAACATTGTCTATTGGATTGGTTATATGTAAGAGTTCAAAAGCAGCAATAATCAAGAACACATCACTAGCTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733939" ref_strand="+" ref_description="SGN-E733939 [LB11BD09]">
      <seq>cgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttcctttttttttttttcccctgacagaacttttgcttcccaaaatcaactgggggaatgttgtttgaaggtattatgaatgtaggaaccaaatatggaaaaccactcgttgttatatttctgaaataaataaaagggaaactattttttgtttgggaaaaaacaaaaaaaaaaaaaaaacctcccccgggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="26509" stop="25031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26209" g_stop="26174" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="176" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="282" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25685" g_stop="25333" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="635" r_length="353" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="641" polyA_stop="663"/>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E733939" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26209" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGT</genome_strand>
        <mrna_strand>CGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCCCCTGACAGAACTTTTGCTTCCCAAAATCAACTGGGGGAATGTTGTTTGAAGGTATTATGAATGTAGGAACCAAATATGGAAAACCACTCGTTGTTATATTTCTGAAATAAATAAAAGGGAAACTATTTTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733936" ref_strand="+" ref_description="SGN-E733936 [LB11BD06]">
      <seq>cgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttcctttttttttttttcccctgacagaacttttgcttcccaaaatcaactgggggaatgttgtttgaatgtattatgaatgaatgaatcaaatatggaaaacccctcgttgtcatatttctgaaataaataaaatggaaactactttttgtttnagaaaaaaaaaaaaaaaaacaaaaanaaaatccggggggggggccgggccccttttcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="26509" stop="25026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26209" g_stop="26174" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="176" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="282" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25685" g_stop="25333" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="635" r_length="353" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="648" polyA_stop="663"/>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E733936" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26209" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGT</genome_strand>
        <mrna_strand>CGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCCCCTGACAGAACTTTTGCTTCCCAAAATCAACTGGGGGAATGTTGTTTGAATGTATTATGAATGAATGAATCAAATATGGAAAACCCCTCGTTGTCATATTTCTGAAATAAATAAAATGGAAACTACTTTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E545781" ref_strand="+" ref_description="SGN-E545781 [TUS-68-M23](-)">
      <seq>ctttattgaggattgggtgaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttggacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttaagtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttccttttttttttcacgcctgacagtatttttgcttcgcaaaatcaactgtgtatgttgtttgtatgtattatgtatgtatgaatcaaatatggaagagcactcgttgttatatttctgaaatgaataaaatggagactacttttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="26168" stop="25034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25868" g_stop="25766" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25685" g_stop="25334" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="452" r_length="349" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E545781" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25868" e_stop="25766"/>
          <exon e_start="25685" e_stop="25334"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTG</genome_strand>
        <mrna_strand>CTTTATTGAGGATTGGGTGAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGGACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTAAGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCC-TTTTTTTTTTCACGCCTGACAGTATTTTTGCTTCGCAAAATCAAC--TGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATGAATAAAATGGAGACTACTTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E290956" ref_strand="+" ref_description="SGN-E290956 [cLET-8-I2]">
      <seq>gaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggactttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttcctttttttttttttcgcctgacagtgcttttgcttcgcaaaatcaactgcgtgtatgtagtttgtatgtattatgtatgtatgaatcaaatatggaagagcactcgttgttatatttctgaaataaataaattggagactactttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="26098" stop="25034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25798" g_stop="25766" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25685" g_stop="25334" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="385" r_length="352" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E290956" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290956" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25798" e_stop="25766"/>
          <exon e_start="25685" e_stop="25334"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTG</genome_strand>
        <mrna_strand>GAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGACTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTGCTTTTGCTTCGCAAAATCAACTGCGTGTATGTAGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAATTGGAGACTACTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E402991" ref_strand="-" ref_description="SGN-E402991 [PPC-9-E16]">
      <seq>agtgtgcccatcccatgtcctcaacttccaacctgtngaggcattcatggttcgtaacattgccaacatggtccctgcttatgacaaggtgagatactctggagtgggagcagccattgagtacgctgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtctctacctgaagatggtagtgaatcaactgcctttattgaggattgggtgaaaatttgtttacctgccaaggccaaggttctggccgatcacggagataaagaatttggacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggaggatttgagctgtggggacttgagttcggtctttctcctgctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttcctttttttttcgcctgacagtactttttctttgcttatgtaattgcttcgcaaaatcaactgtgtatgttgtttgtatgtattatgtatgtatcaatcaaatatgtaagaggcactcgtttttatatttctgaaataaatgaaatggagagtaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="26561" stop="25041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26261" g_stop="26174" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="228" r_length="140" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.948" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="334" r_length="106" r_score="0.953"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25685" g_stop="25335" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="697" r_length="363" r_score="0.852"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E402991" ref_strand="-">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E402991" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="26261" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTT---TTTTC-G--C-CTGAC--AG--TA-CT-TTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGA-GCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTT</genome_strand>
        <mrna_strand>AGTGTGCCCATCCCATGTCCTCAACTTCCAACCTGTNGAGGCATTCATGGTTCGTAACATTGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTGAGATACTCTGGAGTGGGAGCAGCCATTGAGTACGCTGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCTCTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTGAAAATTTGTTTACCTGCCAAGGCCAAGGTTCTGGCCGATCACGGAGATAAAGAATTTGGACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGAGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTGCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTCGCCTGACAGTACTTTTTCTTTGCTTATGTAATTGCTTCGCAAAATCAAC--TGTGTATGTTGTTTGTATGTATTATGTATGTATCAATCAAATATGTAAGAGGCACTCGTTTTTATATTTCTGAAATAAATGAAATGGAGAGTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E342393" ref_strand="+" ref_description="SGN-E342393 [cTOF-8-A11]">
      <seq>tggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttccttttttttttttttcgcctgacagtacttttgcttcgcaaatcaactngtgtgtatgtgnttgtatgtattatgtatgtatgaatcaaatatggaagagcactcgttgttatatttctgaaataaataaaatggagactacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="26514" stop="25037"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26214" g_stop="26174" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="181" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="287" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25685" g_stop="25337" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="636" r_length="349" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E342393" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26214" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25337"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCC-TTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACT-GTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTT</genome_strand>
        <mrna_strand>TGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGC-AAATCAACTNGTGTGTATG-TGNTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E237382" ref_strand="+" ref_description="SGN-E237382 [cLEL-7-G20](-)">
      <seq>gggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttcctttttttttttttcgcctgacagtacttttgcttcgcaaaatcaactgtgtgtatgttgtttgtatgtattatgtatgtatgaatcaaatatggaagagcactcgttgttatatttctgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="26104" stop="25050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25804" g_stop="25766" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25685" g_stop="25345" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="380" r_length="341" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E237382" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25804" e_stop="25766"/>
          <exon e_start="25685" e_stop="25345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAG</genome_strand>
        <mrna_strand>GGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E237283" ref_strand="+" ref_description="SGN-E237283 [cLEL-7-G10](-)">
      <seq>aaagaatttgcacatcaatgcacagcttgtagaagaaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttcctttttttttttttcgcctgacagtacttttgcttcgcaaaatcaactgtgtgtatgttgtttgtatgtattatgtatgtatgaatcaaatatggaagagcactcgttgttatatttctgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="26101" stop="25050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25801" g_stop="25766" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25685" g_stop="25345" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="376" r_length="341" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E237283" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25801" e_stop="25766"/>
          <exon e_start="25685" e_stop="25345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAG</genome_strand>
        <mrna_strand>AAAGAATTTGCACATCAATGCACAGCTTGT-AGAAG................................................................................AAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E234581" ref_strand="+" ref_description="SGN-E234581 [cLEL-6-P14](-)">
      <seq>cctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtcaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttcctttttttttttttcgcctgacagtacttttgcttcgcaaaatcaactgtgtgtatgttgtttgtatgtattatgtatgtatgaatcaaatacggaagagcactcgttgttatatttcttagaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="25981" stop="25050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25682" g_stop="25345" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E234581" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25682" e_stop="25345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAG</genome_strand>
        <mrna_strand>CCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTCAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATACGGAAGAGCACTCGTTGTTATATTTCTTAGAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278439" ref_strand="-" ref_description="SGN-E278439 [cLEL-2-C11]">
      <seq>ttgggtaaaaatttgtttccctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaaactgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgaactgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttccttttttttttttttcgcctgacagtacttttgcttcgcaaaatcaactgtgtgtatgttgtttgtatgtattatgtatgtatggatcaaatatggaagagcactccctgttatatttctgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="26156" stop="25050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25856" g_stop="25766" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25685" g_stop="25346" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="432" r_length="341" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E278439" ref_strand="-">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278439" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="25856" e_stop="25766"/>
          <exon e_start="25685" e_stop="25346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCC-TTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGA</genome_strand>
        <mrna_strand>TTGGGTAAAAATTTGTTTCCCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAACTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAACTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGGATCAAATATGGAAGAGCACTCCCTGTTATATTTCTGAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E288144" ref_strand="+" ref_description="SGN-E288144 [cLES-7-K16]">
      <seq>atgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttcctttttttttttttcgcctgacagtacttttgcttcgcaaaatcaactgtgtgtatgttgtttgtatgtattatgtatgtatgaatcaaatatggaagagcactcgttgttatatttctgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="25989" stop="25050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25775" g_stop="25766" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25685" g_stop="25349" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="347" r_length="337" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E288144" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25775" e_stop="25766"/>
          <exon e_start="25685" e_stop="25349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAAT</genome_strand>
        <mrna_strand>ATGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E321065" ref_strand="-" ref_description="SGN-E321065 [cTOB-13-C3]">
      <seq>tcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttcctttttttttttttcgcctgacagtacttttgcttcgcaaaatcaactgtgtgtatgttgtttgtatgtattatgtatgtatgaatcaaatatggaagagcactcgttgttatatttctgaaataaataaaaaaaaaaaaaaaaaaaactcagacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="26344" stop="25050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26044" g_stop="25949" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="202" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25685" g_stop="25351" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="537" r_length="335" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="538" polyA_stop="555"/>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E321065" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321065" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="26044" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAA</genome_strand>
        <mrna_strand>TCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E289268" ref_strand="+" ref_description="SGN-E289268 [cLES-18-K16]">
      <seq>ttttttcagaaatataacaacgagtgctcttccatatttgattcatacatacataatacatacaaacaacatacacacagttgattttgcgaagcaaaagtactgtcaggcgaaaaaaaaaaaaaggaaggaaattgtgagggccaaatggtaattgaattaagttcatacggaaagaggaggagaaagaccgaactcaagtccccacagctcaaatccaccctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="+" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="25056" stop="25880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25356" g_stop="25580" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="+" ref_id="SGN-E289268" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>225</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25356" e_stop="25580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTCAGAAATATAACAACGAGTGCTCTTCCATATTTGATTCATACATACATAATACATACAAACAACATACACACAGTTGATTTTGCGAAGCAAAAGTACTGTCAGGCGAAAAAAAAAAAAAGGAAGGAAATTGTGAGGGCCAAATGGTAATTGAATTAAGTTCATACGGAAAGAGGAGGAGAAAGACCGAACTCAAGTCCCCACAGCTCAAATCCACCCTT</genome_strand>
        <mrna_strand>TTTTTTCAGAAATATAACAACGAGTGCTCTTCCATATTTGATTCATACATACATAATACATACAAACAACATACACACAGTTGATTTTGCGAAGCAAAAGTACTGTCAGGCGAAAAAAAAAAAAAGGAAGGAAATTGTGAGGGCCAAATGGTAATTGAATTAAGTTCATACGGAAAGAGGAGGAGAAAGACCGAACTCAAGTCCCCACAGCTCAAATCCACCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E294938" ref_strand="-" ref_description="SGN-E294938 [cLET-17-B15]">
      <seq>tagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttcctttttttttttttcgcctgacagtacttttgcttcgcaaaatcaactgtgtgtatgttgtttgtatgtattatgtatgtatgaatcaaatatggaagagcactcgttgttatatttctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="26180" stop="25060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25960" g_stop="25949" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="118" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25685" g_stop="25360" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="444" r_length="326" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E294938" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294938" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="25960" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAA</genome_strand>
        <mrna_strand>TAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E295890" ref_strand="+" ref_description="SGN-E295890 [cLET-27-C10]">
      <seq>taaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcctgagagaaggattggtgaagaaaacattggcatttgaaggagggtactattattttcttaaaggggggatttgagctgtggggacttgaagtcggtctttctcctcctttttccgatgaacttaattcaattaccatttggccctcacaatttccttcctttttttttttttcgcctgacagtacttttgcttcgcaaaatcaactgtgtgtatgttggttgtatgtattatgtatgtatgaatcaaatatggaagagcactcgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="26338" stop="25074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26038" g_stop="25949" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="196" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25685" g_stop="25374" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="508" r_length="312" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E295890" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26038" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGA-TTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTT</genome_strand>
        <mrna_strand>TAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCCTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTTGAAGGAGGGTACTATTATTTTCTTAAAGGGGGGATTTGAGCTGTGGGGACTTGAAGTCGGTCTTTCTCCTCCTTTTTCCG-ATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGGTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E734101" ref_strand="+" ref_description="SGN-E734101 [LB11DB07]">
      <seq>ctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttcctttttttttttttttcccctgacagaatttttgcttcccaaaaccaacggggggaatgttgttggaatgaattaggaaggaataaatcaaatatggaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="26851" stop="25164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26551" g_stop="26522" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="79" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="196" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="336" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="442" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="25685" g_stop="25383" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="747" r_length="305" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E734101" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26551" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25383"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCC--TTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGA</genome_strand>
        <mrna_strand>CTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTTTCCCCTGACAGAATTTTTGCTTCCCAAAACCAACGGGGGGAATGTTGTTGGAATGAATTAGGAAGGAATAAATCAAATATGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E297794" ref_strand="+" ref_description="SGN-E297794 [cLET-38-D11]">
      <seq>gcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttcctttttttttttttttcgcctgacagtacttttgcttcgcaaaatcaactgtgtgtatgttgtttgtatgtattatgtatgtatgaatcaaatatggnagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="26304" stop="25083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26004" g_stop="25949" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="162" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25685" g_stop="25383" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="467" r_length="305" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="468" polyA_stop="500"/>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E297794" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26004" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25383"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCC--TTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGA</genome_strand>
        <mrna_strand>GCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGNAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E285134" ref_strand="-" ref_description="SGN-E285134 [cLER-20-C6]">
      <seq>ctggagtaggagcagccattgaatacgccgtttttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttccttttttttttttcgcctgacagtacttttgcttcgcaaaatcaactgtgtgtatgttgtttgtatgtattatgtatgtatgaatctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="26378" stop="25095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26078" g_stop="25949" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="236" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25685" g_stop="25392" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="529" r_length="293" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E285134" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285134" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="26078" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAA</genome_strand>
        <mrna_strand>CTGGAGTAGGAGCAGCCATTGAATACGCCGTTTTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCC-TTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E370485" ref_strand="+" ref_description="SGN-E370485 [TUS-29-E7](-)">
      <seq>ccaacatggtccctgcttattacaaggtcaggtactctggaagtagaagcagccattgaataccccgtttttcattttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtccctacctgaaaatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttttggccgatcacggaaggaaaaaatttgcacatcaatgcacagcttgtgaaaaagaaactgtgaacgtttcacttggaaatctgcttacgtatccattcgtgaaagaaggattggtgaaaaaaacattggcattgaaaggaggttactatgatttcgtgaagggtggatttgaactgtggggacttgagttcggtctttttcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttccttttttttttttcgcctgacagtacttttgcttcgcaaaatcaactgtgtgtatgttgtttgtatgtattatgtatgtatgaatctgttgaatgccttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="26499" stop="25095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26199" g_stop="26174" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.979" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="167" r_length="141" r_score="0.943"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="273" r_length="106" r_score="0.953"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25685" g_stop="25398" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="560" r_length="287" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="577" polyA_stop="595"/>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E370485" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370485" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26199" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGG-AGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGA</genome_strand>
        <mrna_strand>CCAACATGGTCCCTGCTTATTACAAG.....................................................................................GTCAGGTACTCTGGAAGTAGAAGCAGCCATTGAATACCCCGTTTTTCATTTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCCCTACCTGAAAATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTTTGGCCGATCACGGAAGGAAAAAATTTGCACATCAATGCACAGCTTGTGAAAAA................................................................................GAAACTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAAAGAAGGATTGGTGAAAAAAACATTGGCATTGAAAGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAACTGTGGGGACTTGAGTTCGGTCTTTTTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCC-TTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E390842" ref_strand="+" ref_description="SGN-E390842 [TUS-47-C6](-)">
      <seq>attgaggattgggtaaaaatttgttttcctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatttgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttcctttttttttttttcgcctgacagtacttttgcttcgcaaaatcaactgtgtgtaaggtgtttgtatgtattatgtatgtatgaatctgttgaatgccttgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="26164" stop="25095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25864" g_stop="25766" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25685" g_stop="25398" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="387" r_length="288" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="405" polyA_stop="419"/>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E390842" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25864" e_stop="25766"/>
          <exon e_start="25685" e_stop="25398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGA</genome_strand>
        <mrna_strand>ATTGAGGATTGGGTAAAAATTTGTTTTCCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATTTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTAAGGTGTTTGTATGTATTATGTATGTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E734210" ref_strand="+" ref_description="SGN-E734210 [LB12AC09]">
      <seq>gctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttccttttttttttttttcgcctgacagaacttttgcttcgcaaaatcaactgggggaatgttgtttgaatgaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="26852" stop="25110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26552" g_stop="26522" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="80" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="197" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="337" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="443" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="25685" g_stop="25410" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="720" r_length="277" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E734210" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26552" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCC-TTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATT</genome_strand>
        <mrna_strand>GCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTTCGCCTGACAGAACTTTTGCTTCGCAAAATCAACTGGGGGAATGTTGTTTGAATGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E378485" ref_strand="+" ref_description="SGN-E378485 [TUS-48-H15]">
      <seq>ggaaagaatttgcacatcaatgcactcgcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacatttcccttcttttttttttttttccccggaaaattcttttggttccaaaaatcaacggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="26103" stop="25131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25803" g_stop="25766" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25685" g_stop="25430" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="295" r_length="256" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E378485" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>294</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378485" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25803" e_stop="25766"/>
          <exon e_start="25685" e_stop="25430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGAATTTGCACATCAATGCAC-AGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGT</genome_strand>
        <mrna_strand>GGAAAGAATTTGCACATCAATGCACTCGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACATTTCCCTTCTTTTTTTTTTTTTTCCCCGGAAAATTCTTTTGGTTCCAAAAATCAACGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E293777" ref_strand="-" ref_description="SGN-E293777 [cLET-21-P14]">
      <seq>gtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttcctttttttttttttcgcctgacagtacttttgcttcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="26306" stop="25144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26006" g_stop="25949" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="164" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25685" g_stop="25444" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="406" r_length="242" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E293777" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293777" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="26006" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGC</genome_strand>
        <mrna_strand>GTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E298412" ref_strand="+" ref_description="SGN-E298412 [cLET-41-J24]">
      <seq>ggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttcctttttttttttttcgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="26513" stop="25163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26213" g_stop="26174" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="180" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="286" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25685" g_stop="25463" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="509" r_length="223" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E298412" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26213" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCT</genome_strand>
        <mrna_strand>GGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E295882" ref_strand="+" ref_description="SGN-E295882 [cLET-27-M3]">
      <seq>agaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttcccttctttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="26728" stop="25168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26531" g_stop="26522" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="59" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="176" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="316" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="422" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="25685" g_stop="25467" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="641" r_length="219" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E295882" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26531" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTC</genome_strand>
        <mrna_strand>AGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCCTTCTTTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728631" ref_strand="+" ref_description="SGN-E728631 [LA18BG07]">
      <seq>acagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttccttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="27384" stop="25168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27084" g_stop="27038" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="191" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="240" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="357" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="497" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="603" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25685" g_stop="25468" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="821" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E728631" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27084" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTT</genome_strand>
        <mrna_strand>ACAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E738380" ref_strand="+" ref_description="SGN-E738380 [LC13BG01]">
      <seq>catgaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttccttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="27383" stop="25168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27084" g_stop="27038" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="191" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="240" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="357" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="497" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="603" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25685" g_stop="25468" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="821" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E738380" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27084" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTT</genome_strand>
        <mrna_strand>CATGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E737813" ref_strand="+" ref_description="SGN-E737813 [LC11BC09]">
      <seq>cagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttcctttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="26922" stop="25169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26622" g_stop="26522" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="150" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="267" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="407" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="513" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="25685" g_stop="25469" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="730" r_length="217" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E737813" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26622" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTT</genome_strand>
        <mrna_strand>CAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E296253" ref_strand="+" ref_description="SGN-E296253 [cLET-24-H2]">
      <seq>caacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgctgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaactcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaataaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="26540" stop="25192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26240" g_stop="26174" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="208" r_length="141" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="314" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25685" g_stop="25492" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="508" r_length="194" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E296253" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26240" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAA-TCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCAC</genome_strand>
        <mrna_strand>CAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGCTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAACTCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAATAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E291385" ref_strand="+" ref_description="SGN-E291385 [cLET-2-D6]">
      <seq>tactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcttgaagggtggatttgagctgtggggacttgagttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="26382" stop="25247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26082" g_stop="25949" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="240" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25685" g_stop="25547" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="379" r_length="139" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E291385" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26082" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCG</genome_strand>
        <mrna_strand>TACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCTTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E283889" ref_strand="+" ref_description="SGN-E283889 [cLER-13-C8]">
      <seq>tttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="26850" stop="25253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26550" g_stop="26522" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="78" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="195" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="335" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="441" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="25685" g_stop="25553" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="574" r_length="133" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E283889" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26550" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTG</genome_strand>
        <mrna_strand>TTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278631" ref_strand="+" ref_description="SGN-E278631 [cLER-10-N2]">
      <seq>aacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="26539" stop="25255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26239" g_stop="26174" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="206" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="312" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25685" g_stop="25555" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="443" r_length="131" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E278631" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26239" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACT</genome_strand>
        <mrna_strand>AACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E738930" ref_strand="+" ref_description="SGN-E738930 [LC15BH12]">
      <seq>cgcgtttgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgaaagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28704" stop="25275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28412" g_stop="28297" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="177" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="321" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="370" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="487" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="627" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="733" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="25685" g_stop="25575" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="734" r_stop="844" r_length="111" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E738930" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>845</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28412" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGT</genome_strand>
        <mrna_strand>CGCGT-TTGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAAAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730737" ref_strand="+" ref_description="SGN-E730737 [LA25AB07]">
      <seq>cctttcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28746" stop="25282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28447" g_stop="28297" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="213" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="357" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="406" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="523" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="663" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="769" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="25685" g_stop="25582" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="770" r_stop="873" r_length="104" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E730737" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>873</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28447" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25582"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGT</genome_strand>
        <mrna_strand>CCTTTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730331" ref_strand="+" ref_description="SGN-E730331 [LA23DC01]">
      <seq>cgctaactagcgcaaggcttggcaactcttcttcttcttcttccattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattngaggggagttactatgatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28696" stop="25285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28405" g_stop="28297" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="172" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="316" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="365" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="482" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="622" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="728" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="25685" g_stop="25584" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="729" r_stop="830" r_length="102" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E730331" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>829</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28405" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTGCCT-TCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTC</genome_strand>
        <mrna_strand>CGCTAACTAGCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCCATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTNGAGGGGAGTTACTATGATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E295257" ref_strand="+" ref_description="SGN-E295257 [cLET-20-O10]">
      <seq>gcattcgaccctgttgagcacatgaaagctttctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttaccggccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="26883" stop="25286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26583" g_stop="26522" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="111" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="228" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="368" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="474" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="25685" g_stop="25586" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="574" r_length="100" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E295257" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26583" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATT</genome_strand>
        <mrna_strand>GCATTCGACCCTGTTGAGCACATGAAAGCTTTCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCGGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E298369" ref_strand="+" ref_description="SGN-E298369 [cLET-41-L19]">
      <seq>tcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="26845" stop="25305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26545" g_stop="26522" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="73" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="190" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="330" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="436" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="25685" g_stop="25605" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="517" r_length="81" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E298369" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26545" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25605"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTG</genome_strand>
        <mrna_strand>TCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278109" ref_strand="+" ref_description="SGN-E278109 [cLER-4-D11]">
      <seq>tcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccggtcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaagtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcntgagagaaagattggtgaagaaaacattggcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="26580" stop="25306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26280" g_stop="26174" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="247" r_length="140" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="353" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25685" g_stop="25606" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="433" r_length="80" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E278109" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26280" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25606"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATT</genome_strand>
        <mrna_strand>TCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGGTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAAGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCNTGAGAGAAAGATTGGTGAAGAAAACATTGGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E372119" ref_strand="+" ref_description="SGN-E372119 [TUS-30-B12]">
      <seq>tcccatcatcaaccccattgtgagagaagaaatggcagaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28618" stop="25321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28318" g_stop="28297" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="84" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="228" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="277" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="394" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="534" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="640" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="25685" g_stop="25621" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="705" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E372119" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28318" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAA</genome_strand>
        <mrna_strand>TCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAGAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726959" ref_strand="+" ref_description="SGN-E726959 [LA13BC08]">
      <seq>gcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaagaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28770" stop="25322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28470" g_stop="28297" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="236" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="380" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="429" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="546" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="686" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="792" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="25685" g_stop="25622" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="793" r_stop="856" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E726959" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>856</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28470" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGA</genome_strand>
        <mrna_strand>GCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAA................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E738185" ref_strand="+" ref_description="SGN-E738185 [LC12CG08]">
      <seq>tattactagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28843" stop="25323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28543" g_stop="28297" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="309" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="453" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="502" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="619" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="759" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="760" r_stop="865" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="25685" g_stop="25623" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="866" r_stop="928" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E738185" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>928</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738185" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28543" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25623"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTG</genome_strand>
        <mrna_strand>TATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730283" ref_strand="+" ref_description="SGN-E730283 [LA23CF03]">
      <seq>catctgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28775" stop="25326"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28475" g_stop="28297" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="241" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="385" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="434" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="551" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="691" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="692" r_stop="797" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="25685" g_stop="25626" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="798" r_stop="857" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E730283" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>857</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28475" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25626"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTG</genome_strand>
        <mrna_strand>CATCTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726475" ref_strand="+" ref_description="SGN-E726475 [LA11DF10]">
      <seq>gtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28777" stop="25338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28477" g_stop="28297" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="243" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="387" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="436" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="553" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="693" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="694" r_stop="799" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="25685" g_stop="25638" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="800" r_stop="847" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E726475" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>847</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28477" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTG</genome_strand>
        <mrna_strand>GTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727824" ref_strand="+" ref_description="SGN-E727824 [LA15DD09]">
      <seq>caattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28759" stop="25338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28459" g_stop="28297" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="225" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="369" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="418" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="535" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="675" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="676" r_stop="781" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="25685" g_stop="25638" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="782" r_stop="829" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E727824" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>829</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727824" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28459" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTG</genome_strand>
        <mrna_strand>CAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731487" ref_strand="+" ref_description="SGN-E731487 [LA27BB07]">
      <seq>ttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaagaagctgtgaacgtttcacttggaaatctgcttacgtatccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28768" stop="25342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28468" g_stop="28297" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="234" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="378" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="427" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="544" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="684" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="685" r_stop="790" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="25685" g_stop="25642" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="791" r_stop="834" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E731487" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>834</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28468" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATT</genome_strand>
        <mrna_strand>TTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAA................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E740756" ref_strand="+" ref_description="SGN-E740756 [LC22DA07]">
      <seq>cattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28765" stop="25342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28465" g_stop="28297" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="231" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="375" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="424" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="541" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="681" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="682" r_stop="787" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="25685" g_stop="25642" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="788" r_stop="831" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E740756" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>831</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28465" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATT</genome_strand>
        <mrna_strand>CATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727060" ref_strand="+" ref_description="SGN-E727060 [LA13CE01]">
      <seq>aattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28758" stop="25342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28458" g_stop="28297" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="224" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="368" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="417" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="534" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="674" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="780" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="25685" g_stop="25642" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="781" r_stop="824" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E727060" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>824</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28458" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATT</genome_strand>
        <mrna_strand>AATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726587" ref_strand="+" ref_description="SGN-E726587 [LA12BA09]">
      <seq>ctagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaagaagctgtgaacgtttcacttggaaatctgcttacgtatcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28838" stop="25344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28538" g_stop="28297" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="304" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="448" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="497" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="614" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="754" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="755" r_stop="860" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="25685" g_stop="25644" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="861" r_stop="902" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E726587" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>902</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28538" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCA</genome_strand>
        <mrna_strand>CTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAA................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E289789" ref_strand="+" ref_description="SGN-E289789 [cLET-9-I12]">
      <seq>ggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="26585" stop="25348"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26285" g_stop="26174" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="252" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="358" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25685" g_stop="25648" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="396" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E289789" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26285" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTA</genome_strand>
        <mrna_strand>GGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E738243" ref_strand="+" ref_description="SGN-E738243 [LC12DF09]">
      <seq>attactagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28842" stop="25350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28542" g_stop="28297" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="308" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="452" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="501" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="618" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="758" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="759" r_stop="864" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="25685" g_stop="25651" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="865" r_stop="899" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E738243" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>899</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28542" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTAC</genome_strand>
        <mrna_strand>ATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731221" ref_strand="+" ref_description="SGN-E731221 [LA26CA04]">
      <seq>ctctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaagggagctgtgaacgtttcacttggaaatctgcttacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28748" stop="25350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28448" g_stop="28297" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="214" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="358" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="407" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="524" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="664" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="665" r_stop="770" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="25685" g_stop="25651" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="771" r_stop="805" r_length="35" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E731221" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28448" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTAC</genome_strand>
        <mrna_strand>CTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GGAGCTGTGAACGTTTCACTTGGAAATCTGCTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E739401" ref_strand="+" ref_description="SGN-E739401 [LC17BC04]">
      <seq>actattactagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaagaagctgtgaacgtttcacttggaaatctgctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28845" stop="25352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28545" g_stop="28297" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="311" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="455" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="504" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="621" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="761" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="762" r_stop="867" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="25685" g_stop="25652" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="868" r_stop="901" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E739401" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>901</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28545" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTA</genome_strand>
        <mrna_strand>ACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAA................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E736356" ref_strand="+" ref_description="SGN-E736356 [LC05BH06]">
      <seq>attactagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaagcaaaagttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaagaagctgtgaacgtttcactgggaaatctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28842" stop="25354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28542" g_stop="28297" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="308" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="452" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="501" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="618" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="758" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="759" r_stop="863" r_length="105" r_score="0.972"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="25685" g_stop="25654" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="864" r_stop="895" r_length="32" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E736356" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>896</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28542" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCT</genome_strand>
        <mrna_strand>ATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAAGCAAAAGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAA-................................................................................GAAGCTGTGAACGTTTCACTGGGAAATCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728537" ref_strand="+" ref_description="SGN-E728537 [LA18AF03]">
      <seq>ctattactagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28844" stop="25355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28544" g_stop="28297" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="310" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="454" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="503" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="620" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="760" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="761" r_stop="866" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="25685" g_stop="25655" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="867" r_stop="897" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E728537" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>897</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28544" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGC</genome_strand>
        <mrna_strand>CTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E739538" ref_strand="+" ref_description="SGN-E739538 [LC17DD07]">
      <seq>caactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaagaagctgtgaacgtttcacttggaaatctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28775" stop="25355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28475" g_stop="28297" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="241" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="385" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="434" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="551" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="691" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="692" r_stop="797" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="25685" g_stop="25655" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="798" r_stop="828" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E739538" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28475" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGC</genome_strand>
        <mrna_strand>CAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAA................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E296160" ref_strand="+" ref_description="SGN-E296160 [cLET-24-H18]">
      <seq>gcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="26883" stop="25361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26583" g_stop="26522" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="111" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="228" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="368" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="474" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="25685" g_stop="25661" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="499" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E296160" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296160" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26583" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAA</genome_strand>
        <mrna_strand>GCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727700" ref_strand="+" ref_description="SGN-E727700 [LA15CA01]">
      <seq>cgtgaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28646" stop="25365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28349" g_stop="28297" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="115" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="259" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="308" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="425" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="565" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="671" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="25685" g_stop="25665" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="692" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E727700" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28349" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTT</genome_strand>
        <mrna_strand>CGTGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E740848" ref_strand="+" ref_description="SGN-E740848 [LC23AF03]">
      <seq>cgcttttggcttctcccacccctgcgggggcttcggttaggaaattctactctgtcctgttgccttttaaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggaggggaagaatttgcacatcaatgcacagcttgtgagaaggaacctgtgaacgtttcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28693" stop="25366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28415" g_stop="28297" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="166" r_length="120" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="228" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="372" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="421" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="538" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="678" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25871" g_stop="25766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="784" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="25685" g_stop="25666" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="785" r_stop="804" r_length="20" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E740848" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28415" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25766"/>
          <exon e_start="25685" e_stop="25666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTC-GTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACT</genome_strand>
        <mrna_strand>CTACTCTGTCCTGTTGCCTTTTAAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGGAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAACCTGTGAACGTTTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725665" ref_strand="-" ref_description="SGN-E725665 [LA05AE01]">
      <seq>gccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactcctgcagcccggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="26500" stop="25665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26200" g_stop="26174" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26088" g_stop="25962" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="153" r_length="126" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25961" i_stop="25686" i_length="276">
            <donor d_prob="0.959" d_score="0.90"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25685" g_stop="25681" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="158" r_length="5" r_score="0.400"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E725665" ref_strand="-">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>159</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725665" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="26200" e_stop="26174"/>
          <exon e_start="26088" e_stop="25962"/>
          <exon e_start="25685" e_stop="25681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGC</genome_strand>
        <mrna_strand>GCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACT-CCTGCAGCCC....................................................................................................................................................................................................................................................................................GGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727443" ref_strand="+" ref_description="SGN-E727443 [LA14CH01]">
      <seq>ctagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28838" stop="25471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28538" g_stop="28297" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="304" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="448" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="497" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="614" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="754" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25871" g_stop="25771" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="755" r_stop="855" r_length="101" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E727443" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>855</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28538" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTG</genome_strand>
        <mrna_strand>CTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E736541" ref_strand="+" ref_description="SGN-E736541 [LC06AF08]">
      <seq>caaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaaatcactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaagttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28827" stop="25471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28527" g_stop="28297" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="293" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="437" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="486" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="603" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="743" r_length="140" r_score="0.979"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.948" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25871" g_stop="25771" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="744" r_stop="844" r_length="101" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E736541" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>844</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28527" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTG</genome_strand>
        <mrna_strand>CAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAAATCAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAAGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E737831" ref_strand="+" ref_description="SGN-E737831 [LC11BF01]">
      <seq>ggctgcaggaattcggcacgagggtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28777" stop="25471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28477" g_stop="28297" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="204" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="266" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="410" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="459" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="576" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="716" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25871" g_stop="25771" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="717" r_stop="817" r_length="101" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E737831" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28477" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTG</genome_strand>
        <mrna_strand>GTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730892" ref_strand="+" ref_description="SGN-E730892 [LA25CB03]">
      <seq>ccatttgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28775" stop="25476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28476" g_stop="28297" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="242" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="386" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="435" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="552" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="692" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25871" g_stop="25776" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="693" r_stop="788" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E730892" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28476" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGC</genome_strand>
        <mrna_strand>CCATTTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E289687" ref_strand="+" ref_description="SGN-E289687 [cLET-4-E23]">
      <seq>aaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcaccgagggaaagaatttgcacatcaatgcacagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="26720" stop="25476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26420" g_stop="26375" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="163" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="303" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25871" g_stop="25776" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="399" r_length="96" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E289687" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26420" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGC</genome_strand>
        <mrna_strand>AAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACCGAGGGAAAGAATTTGCACATCAATGCACAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E740437" ref_strand="+" ref_description="SGN-E740437 [LC21BG06]">
      <seq>ctatactattactagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28849" stop="25477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28549" g_stop="28297" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="315" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="459" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="508" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="625" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="765" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25871" g_stop="25777" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="766" r_stop="860" r_length="95" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E740437" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>860</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28549" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAG</genome_strand>
        <mrna_strand>CTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726717" ref_strand="+" ref_description="SGN-E726717 [LA12CE05]">
      <seq>gttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcanaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgcccaagcaaaggttctggccgatcacggagggaaaaaattttgcacatcaatgcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28835" stop="25479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28535" g_stop="28297" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="301" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="445" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="494" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="611" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="751" r_length="140" r_score="0.993"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.948" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25871" g_stop="25779" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="752" r_stop="845" r_length="94" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E726717" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>844</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28535" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAA-TTTGCACATCAATGCAC</genome_strand>
        <mrna_strand>GTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCANAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCCAAGCAAAGGTTCTGGCCGATCACGGAGGGAAAAAATTTTGCACATCAATGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726875" ref_strand="+" ref_description="SGN-E726875 [LA13AC12]">
      <seq>ctattactagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcaaaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcagaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgcgtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggaggggaaacaatttgcacatcaatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28844" stop="25480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28544" g_stop="28297" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="310" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="454" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="503" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="620" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="760" r_length="140" r_score="0.993"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.948" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25871" g_stop="25780" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="761" r_stop="853" r_length="93" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E726875" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>852</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28544" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGA-GGGAAAGAATTTGCACATCAATGCA</genome_strand>
        <mrna_strand>CTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAAAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAGAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGCGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGGAAACAATTTGCACATCAATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E475944" ref_strand="+" ref_description="SGN-E475944 [cSTB-42-F20]">
      <seq>caaggccttcgaccctgttgagcacatgaaaactggctttattcatttcaagactgagaaatatgatacaaacccagccttatatggtgaactagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcgcgagtgtgcccatcccatatcctcaacttccaacctggtgaggcattcatggttcgtaacattgccaacatggtccctgcttatgacaaggtgagatactctggagtgggagcagccattgagtacgctgttcttcatcttaaggtggagaacattgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtctctacctgaagatggtagtgaatcaactgcctttattgaagattgggtgaaaatttgtttacctgccaaggccaaagttctagccgatcacggagataaagaatttggacatcaatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="26887" stop="25480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26587" g_stop="26522" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="115" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.961" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="232" r_length="117" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="372" r_length="140" r_score="0.950"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.948" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25871" g_stop="25780" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="464" r_length="92" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E475944" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E475944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26587" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCA</genome_strand>
        <mrna_strand>CAAGGCCTTCGACCCTGTTGAGCACATGAAAACTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................TACAAACCCAGCCTTATATGGTGAACTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCGCGAGTGTGCCCATCCCATATCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATTGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTGAGATACTCTGGAGTGGGAGCAGCCATTGAGTACGCTGTTCTTCATCTTAAGGTGGAGAACATTGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCTCTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAAGATTGGGTGAAAATTTGTTTACCTGCCAAGGCCAAAGTTCTAGCCGATCACGGAGATAAAGAATTTGGACATCAATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731619" ref_strand="+" ref_description="SGN-E731619 [LA27CF11]">
      <seq>agctatactattactagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgangattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28851" stop="25487"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28551" g_stop="28297" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="317" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="461" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="510" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="627" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="767" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25871" g_stop="25787" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="768" r_stop="852" r_length="85" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E731619" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>852</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28551" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25787"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACAT</genome_strand>
        <mrna_strand>AGCTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGANGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E545775" ref_strand="+" ref_description="SGN-E545775 [TUS-68-M19]">
      <seq>ctgcttccattaacaattgcctcactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaggccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgatcagatcactgctgaattgaaatcagcagatggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgatacaaacccagccttatatggtgaactagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtgtgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcgactgcctttattgaggattgggtgaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagatttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28772" stop="25490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28472" g_stop="28297" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="241" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="385" r_length="144" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="434" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="551" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="691" r_length="140" r_score="0.993"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.948" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25871" g_stop="25790" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="692" r_stop="772" r_length="81" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E545775" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545775" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28472" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAA--C-TCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCA</genome_strand>
        <mrna_strand>CTGCTTCCATTAACAATTGCCTCACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAGGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGATCAGATCACTGCTGAATTGAAATCAGCAGATGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................TACAAACCCAGCCTTATATGGTGAACTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTGTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCGAC.............................................................................TGCCTTTATTGAGGATTGGGTGAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAG-ATTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730069" ref_strand="+" ref_description="SGN-E730069 [LA22DH04]">
      <seq>ctattactagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgnngtaaaatttgtttacctgccaaggcaaaagttctggccgatcacggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28844" stop="25504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28544" g_stop="28297" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="310" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="454" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="503" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="620" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="760" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25871" g_stop="25804" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="761" r_stop="828" r_length="68" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E730069" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28544" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAG</genome_strand>
        <mrna_strand>CTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGNNGTAAAATTTGTTTACCTGCCAAGGCAAAAGTTCTGGCCGATCACGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731699" ref_strand="+" ref_description="SGN-E731699 [LA27DF11]">
      <seq>agctatactattactagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaaatttgtttacctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28851" stop="25533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28551" g_stop="28297" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="317" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="461" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="510" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="627" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="767" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25871" g_stop="25833" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="768" r_stop="807" r_length="40" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E731699" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28551" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGT-AAAAATTTGTTTACCTGC</genome_strand>
        <mrna_strand>AGCTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAAATTTGTTTACCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E729975" ref_strand="+" ref_description="SGN-E729975 [LA22CF11]">
      <seq>attactagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtaatgaatcaactgcctttattgaggattgggtaaaaatttgtttacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28842" stop="25534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28542" g_stop="28297" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="308" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="452" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="501" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="618" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="758" r_length="140" r_score="0.993"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.948" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25871" g_stop="25834" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="759" r_stop="796" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E729975" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28542" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTG</genome_strand>
        <mrna_strand>ATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAATGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E296757" ref_strand="+" ref_description="SGN-E296757 [cLET-26-C19]">
      <seq>aagaagaagaagaagagttgccaagcctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28661" stop="25535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28359" g_stop="28297" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="83" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="145" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="289" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="338" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="455" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="595" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25871" g_stop="25835" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="632" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E296757" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28359" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCT</genome_strand>
        <mrna_strand>CCAAGCCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727952" ref_strand="+" ref_description="SGN-E727952 [LA16BA03]">
      <seq>agctctattattactagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28851" stop="25643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28551" g_stop="28297" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="317" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="461" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="510" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="627" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="767" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25871" g_stop="25850" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="768" r_stop="789" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E727952" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727952" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28551" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTA</genome_strand>
        <mrna_strand>AGCTCTATTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731133" ref_strand="+" ref_description="SGN-E731133 [LA26BA03]">
      <seq>ctatactattactagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaaatcactgcctttattgagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28849" stop="25643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28549" g_stop="28297" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="315" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="459" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="508" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="625" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="765" r_length="140" r_score="0.979"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.948" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25871" g_stop="25857" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="766" r_stop="780" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E731133" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28549" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGA</genome_strand>
        <mrna_strand>CTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAAATCAC.............................................................................TGCCTTTATTGAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728192" ref_strand="+" ref_description="SGN-E728192 [LA17AA07]">
      <seq>gctatactattactagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaaatcactgcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28850" stop="25643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28550" g_stop="28297" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="316" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="460" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="509" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="626" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="766" r_length="140" r_score="0.979"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.948" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25871" g_stop="25866" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="767" r_stop="772" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E728192" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28550" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
          <exon e_start="25871" e_stop="25866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTT</genome_strand>
        <mrna_strand>GCTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAAATCAC.............................................................................TGCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728472" ref_strand="+" ref_description="SGN-E728472 [LA17DG05]">
      <seq>actattactagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28845" stop="25649"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28545" g_stop="28297" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="311" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="455" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="504" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="621" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="761" r_length="140" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E728472" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728472" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28545" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC</genome_strand>
        <mrna_strand>ACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286970" ref_strand="+" ref_description="SGN-E286970 [cLES-6-C22]">
      <seq>aacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaaagatgtagtgaatcaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28761" stop="25649"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28461" g_stop="28297" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="227" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="371" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="420" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="537" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26088" g_stop="25949" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="677" r_length="140" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E286970" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286970" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28461" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="25949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC</genome_strand>
        <mrna_strand>AACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAAGATGTAGTGAATCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E290692" ref_strand="+" ref_description="SGN-E290692 [cLET-10-A12]">
      <seq>acgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="26564" stop="25651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26264" g_stop="26174" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26088" g_stop="25951" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="229" r_length="138" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E290692" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>229</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26264" e_stop="26174"/>
          <exon e_start="26088" e_stop="25951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCA</genome_strand>
        <mrna_strand>ACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E740554" ref_strand="+" ref_description="SGN-E740554 [LC21DG06]">
      <seq>ctatactattactagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28849" stop="25662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28549" g_stop="28297" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="315" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="459" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="508" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="625" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26088" g_stop="25962" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="752" r_length="127" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E740554" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740554" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28549" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="25962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATG</genome_strand>
        <mrna_strand>CTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E283453" ref_strand="+" ref_description="SGN-E283453 [cLER-12-N7]">
      <seq>tttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcgctcaagaaacttcttcttgagacatctgaacttggaccatttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28632" stop="25663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28332" g_stop="28297" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="98" r_length="62" r_score="0.903"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="242" r_length="144" r_score="0.965"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="291" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="408" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26088" g_stop="25963" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="534" r_length="126" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E283453" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283453" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28332" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="25963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGAT</genome_strand>
        <mrna_strand>TTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCGCTCAAGAAACTTCTTCT....................................................................................................................................................................................................................................................................................................................................................................................TGAGACATCTGAACTTGGACCATTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E294181" ref_strand="+" ref_description="SGN-E294181 [cLET-13-J6]">
      <seq>agaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28647" stop="25664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28347" g_stop="28297" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="113" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="257" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="306" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="423" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26088" g_stop="25964" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="548" r_length="125" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E294181" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28347" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="25964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGA</genome_strand>
        <mrna_strand>AGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E366716" ref_strand="+" ref_description="SGN-E366716 [cLPT-17-G4]">
      <seq>tcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaggccgttgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagatggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgatacaaacccagccttatatggtgaactagcaaagggccagagcccaaagttcatggttttcgcgtgctctgactcacgagtgtgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28613" stop="25664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28313" g_stop="28297" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="79" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="223" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="272" r_length="49" r_score="0.939"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="389" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26088" g_stop="25964" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="514" r_length="125" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E366716" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28313" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="25964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGA</genome_strand>
        <mrna_strand>TCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAGGCCGTTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGATGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................TACAAACCCAGCCTTATATGGTGAACTAGCAAAGGGCCAGAGCCCAAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTGTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E545782" ref_strand="+" ref_description="SGN-E545782 [TUS-68-M23]">
      <seq>ctgcttccattaacaattgcctcactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaggccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgatcagatcactgctgaattgaaatcagcagatggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgatacaaacccagccttatatggtgaactagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtgtgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggaggaaaacatcgttgtcattggccacagtgcttgtggaggtatcataagtctcatgtcacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28772" stop="25672"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28472" g_stop="28297" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="241" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="385" r_length="144" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="434" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="551" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26088" g_stop="25972" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="668" r_length="117" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E545782" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28472" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="25972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAA--C-TCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTA</genome_strand>
        <mrna_strand>CTGCTTCCATTAACAATTGCCTCACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAGGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGATCAGATCACTGCTGAATTGAAATCAGCAGATGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................TACAAACCCAGCCTTATATGGTGAACTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTGTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGAGGAAAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCATAAGTCTCATGTCACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E296748" ref_strand="+" ref_description="SGN-E296748 [cLET-26-A11]">
      <seq>agaaacgagcccgtctttgctgcccctactgccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcggtgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28647" stop="25672"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28347" g_stop="28297" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="113" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="257" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="306" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="423" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26088" g_stop="25972" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="540" r_length="117" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E296748" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28347" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="25972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTA</genome_strand>
        <mrna_strand>AGAAACGAGCCCGTCTTTGCTGCCCCTACTGCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGGTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278996" ref_strand="+" ref_description="SGN-E278996 [cLER-2-D20]">
      <seq>agaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="27382" stop="25693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27082" g_stop="27038" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="189" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="238" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="355" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26088" g_stop="25993" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="451" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E278996" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27082" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="25993"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGT</genome_strand>
        <mrna_strand>AGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735839" ref_strand="+" ref_description="SGN-E735839 [LC03BD05]">
      <seq>cgattactagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcataacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggaaaacatcgttgtcattggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28844" stop="25711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28544" g_stop="28297" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="310" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="454" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="503" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="620" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26088" g_stop="26011" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="698" r_length="78" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E735839" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28544" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="26011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGC</genome_strand>
        <mrna_strand>CGATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCATAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAAAACATCGTTGTCATTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E285248" ref_strand="+" ref_description="SGN-E285248 [cLER-20-J18]">
      <seq>gcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28811" stop="25713"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28511" g_stop="28297" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="277" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="421" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="470" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="587" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26088" g_stop="26013" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="663" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E285248" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28511" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="26013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTG</genome_strand>
        <mrna_strand>GCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E299392" ref_strand="+" ref_description="SGN-E299392 [cLET-43-C22]">
      <seq>agaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28647" stop="25714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28347" g_stop="28297" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="113" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="257" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="306" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="423" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26088" g_stop="26014" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="498" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E299392" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28347" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="26014"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATT</genome_strand>
        <mrna_strand>AGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726082" ref_strand="+" ref_description="SGN-E726082 [LA10BA11]">
      <seq>tcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgatacgccgttcttatcttaggtggagacatcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28671" stop="25721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28371" g_stop="28297" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="137" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="281" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="330" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="447" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26088" g_stop="26021" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="511" r_length="64" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E726082" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28371" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="26021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGT</genome_strand>
        <mrna_strand>TCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTG-ATACGCCGTTCTT-ATCTT-AGGTGGAG-ACATCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E282909" ref_strand="+" ref_description="SGN-E282909 [cLER-15-L10]">
      <seq>tcccatcatgaaccccattgtgagagaagaaatggcagaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgtccatcccatgtcctcaacttacaacctggtgaggcattcatggctcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccggtcttcatcttaaggtggagaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="27400" stop="25725"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="84" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="228" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="277" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="394" r_length="117" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26088" g_stop="26025" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="458" r_length="64" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E282909" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="26025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACA</genome_strand>
        <mrna_strand>AGAGAAGAAATGGCAGAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGTCCATCCCATGTCCTCAACTTACAACCTGGTGAGGCATTCATGGCTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGGTCTTCATCTTAAGGTGGAGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E365447" ref_strand="+" ref_description="SGN-E365447 [cLPT-2-K22]">
      <seq>gaggctcaagccttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttcttcttctattccaagtctcatcagaaaccagccccgtctttgctgcccctacctcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctaccgatcaggccgttgctgcacctcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcacctgctgaattgaaatcagcagatggcggcaaggcattcgacccctgttgagccaccatgaaagctggctttattcatttcaagactgagaaatatgatacaaacccagccttatatggtgaactagcaaagggccagagcccaaagttcatggttttcgcgtgcctctgactcacgagtgtgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28737" stop="25738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28440" g_stop="28297" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.847"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.971" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="217" r_length="64" r_score="0.903"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="365" r_length="148" r_score="0.938"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="414" r_length="49" r_score="0.939"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.961" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="532" r_length="118" r_score="0.974"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26088" g_stop="26038" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="583" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E365447" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28440" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="26038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGCTCAAG-CTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAA-----CT-CTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCC-GTCTTTGCTGCCCCTA-CTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTA-CGATCAAGCCATTGCTGCA-CTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCA-CTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGA-CCCTGTTGAG-CA-CATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTG-CTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTT</genome_strand>
        <mrna_strand>GAGGCTCAAGCCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACCAGCCCCGTCTTTGCTGCCCCTACCTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACCGATCAGGCCGTTGCTGCACCTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACCTGCTGAATTGAAATCAGCAGATGGCGGCAAGGCATTCGACCCCTGTTGAGCCACCATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................TACAAACCCAGCCTTATATGGTGAACTAGCAAAGGGCCAGAGCCCAAAG....................................................................................TTCATGGTTTTCGCGTGCCTCTGACTCACGAGTGTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278884" ref_strand="+" ref_description="SGN-E278884 [cLER-2-E21]">
      <seq>aaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatgggtttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="27400" stop="25753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="74" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="218" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="267" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="384" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26088" g_stop="26053" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="420" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E278884" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="26053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATAC</genome_strand>
        <mrna_strand>AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGGTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728772" ref_strand="+" ref_description="SGN-E728772 [LA18DF02]">
      <seq>ctattactagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccgttaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28844" stop="25754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28544" g_stop="28297" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="310" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="454" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="503" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="620" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26088" g_stop="26054" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="655" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E728772" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28544" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="26054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATA</genome_strand>
        <mrna_strand>CTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCGTTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E291514" ref_strand="+" ref_description="SGN-E291514 [cLET-6-G13]">
      <seq>taacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacanggtcaggtactctggagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28762" stop="25771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28462" g_stop="28297" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="228" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="372" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="421" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="538" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26088" g_stop="26071" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="556" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E291514" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291514" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28462" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="26071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTA</genome_strand>
        <mrna_strand>TAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACANG.....................................................................................GTCAGGTACTCTGGAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E395231" ref_strand="+" ref_description="SGN-E395231 [TUS-45-G22]">
      <seq>tagctatactattactagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28852" stop="25865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28552" g_stop="28297" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="318" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="462" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="511" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="628" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26088" g_stop="26079" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="638" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E395231" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28552" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
          <exon e_start="26088" e_stop="26079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACT</genome_strand>
        <mrna_strand>TAGCTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E290767" ref_strand="+" ref_description="SGN-E290767 [cLET-10-P17]">
      <seq>aactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28774" stop="25870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28474" g_stop="28297" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="240" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="384" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="433" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26174" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="550" r_length="117" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E290767" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28474" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG</genome_strand>
        <mrna_strand>AACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286966" ref_strand="+" ref_description="SGN-E286966 [cLES-6-C2]">
      <seq>ttactagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28841" stop="25876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28541" g_stop="28297" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="307" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="451" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="500" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26176" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="615" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E286966" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28541" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACA</genome_strand>
        <mrna_strand>TTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E358258" ref_strand="+" ref_description="SGN-E358258 [cLHT-28-G10]">
      <seq>tcaactgcttccattaacaattgcctcactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaggccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgatcagatcactgctgaattgaaatcagcagatggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgatacaaacccagccttatatggtgaactagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtgtgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28776" stop="25876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28476" g_stop="28297" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="245" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="389" r_length="144" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="438" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26176" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="553" r_length="115" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E358258" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28476" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAA--C-TCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACA</genome_strand>
        <mrna_strand>TCAACTGCTTCCATTAACAATTGCCTCACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAGGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGATCAGATCACTGCTGAATTGAAATCAGCAGATGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................TACAAACCCAGCCTTATATGGTGAACTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTGTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E366257" ref_strand="+" ref_description="SGN-E366257 [cLPT-1-B23]">
      <seq>ttagtaacaaagtagtataaagggaaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaggccgttgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagatggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgatacaaacccagccttatatggtgaactagcaaagggccagagcccaaagttcatggttttcgcgtgctctgactcacgagtgtgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28834" stop="25877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28534" g_stop="28297" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="306" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="450" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="499" r_length="49" r_score="0.939"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26177" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="613" r_length="114" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E366257" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28534" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAA-----C-TCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGAC</genome_strand>
        <mrna_strand>TTAGTAACAAAGTAGTATAAAGGGAAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAGGCCGTTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGATGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................TACAAACCCAGCCTTATATGGTGAACTAGCAAAGGGCCAGAGCCCAAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTGTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E268046" ref_strand="+" ref_description="SGN-E268046 [cLEI-15-N13]">
      <seq>tagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28833" stop="25877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28533" g_stop="28297" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="299" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="443" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="492" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26177" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="606" r_length="114" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E268046" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28533" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGAC</genome_strand>
        <mrna_strand>TAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355635" ref_strand="+" ref_description="SGN-E355635 [cLHT-1-F23]">
      <seq>tgcttccattaacaattgcctcactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaggccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgatcagatcactgctgaattgaaatcagcagatggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgatacaaacccagccttatatggtgaactagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtgtgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28771" stop="25877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28471" g_stop="28297" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="240" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="384" r_length="144" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="433" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26177" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="547" r_length="114" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E355635" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28471" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAA--C-TCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGAC</genome_strand>
        <mrna_strand>TGCTTCCATTAACAATTGCCTCACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAGGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGATCAGATCACTGCTGAATTGAAATCAGCAGATGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................TACAAACCCAGCCTTATATGGTGAACTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTGTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726107" ref_strand="+" ref_description="SGN-E726107 [LA10BD05]">
      <seq>gcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccacctggtgaggcattcatggttcgtacatcgccacatggtcctgctatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28770" stop="25878"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28470" g_stop="28297" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="236" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="380" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="429" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26178" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="537" r_length="108" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E726107" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28470" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGA</genome_strand>
        <mrna_strand>GCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCC-ACCTGGTGAGGCATTCATGGTTCGT-ACATCGCC-ACATGGT-CCTGC-TATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E323052" ref_strand="+" ref_description="SGN-E323052 [cTOB-28-M15]">
      <seq>aacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtccctcacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28829" stop="25879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28529" g_stop="28297" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="295" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="439" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="488" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26179" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="600" r_length="112" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E323052" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28529" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATG</genome_strand>
        <mrna_strand>AACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCCTCACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726000" ref_strand="+" ref_description="SGN-E726000 [LA10AA05]">
      <seq>agctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgcccacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28802" stop="25892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28502" g_stop="28297" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="268" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="412" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="461" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26192" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="560" r_length="99" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E726000" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28502" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATG</genome_strand>
        <mrna_strand>AGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCCACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E293576" ref_strand="-" ref_description="SGN-E293576 [cLET-15-L13](-)">
      <seq>tcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcgaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28776" stop="25900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28476" g_stop="28297" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="242" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="386" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="435" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26200" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="526" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E293576" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293576" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="28476" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCG</genome_strand>
        <mrna_strand>TCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCGAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E293575" ref_strand="+" ref_description="SGN-E293575 [cLET-15-L13]">
      <seq>tcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcgaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28776" stop="25900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28476" g_stop="28297" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="242" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="386" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="435" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26200" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="526" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E293575" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28476" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCG</genome_strand>
        <mrna_strand>TCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCGAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E325516" ref_strand="+" ref_description="SGN-E325516 [cTOC-15-C23]">
      <seq>tagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28837" stop="25902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28537" g_stop="28297" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="303" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="447" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="496" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26202" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="585" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E325516" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325516" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28537" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACAT</genome_strand>
        <mrna_strand>TAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E288399" ref_strand="+" ref_description="SGN-E288399 [cLES-16-F15]">
      <seq>caattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagcccgaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28759" stop="25902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28459" g_stop="28297" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="225" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="369" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="418" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26202" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="507" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E288399" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288399" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28459" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACAT</genome_strand>
        <mrna_strand>CAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCGAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E340927" ref_strand="+" ref_description="SGN-E340927 [cTOF-5-A14]">
      <seq>tgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctntattcatttcaagactgagaaatatgacacanacccagccttatatggtgagctagcaaagggccagagccctaaagtcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttcaacctggtgaggcattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28771" stop="25915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28471" g_stop="28297" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="237" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="381" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="430" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26215" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="505" r_length="75" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E340927" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28471" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCA</genome_strand>
        <mrna_strand>TGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTNTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACANACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAA....................................................................................GTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTT-CAACCTGGTGAGGCATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E366513" ref_strand="+" ref_description="SGN-E366513 [cLPT-13-F8]">
      <seq>ctattactagttagtaacaaagtagtataaagggaaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaggccgttgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagatggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgatacaaacccagccttatatggtgaactagcaaagggccagagcccaaagttcatggttttcgcgtgctctgactcacgagtgtgcccatcccatgtcctcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28844" stop="25937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28544" g_stop="28297" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="316" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="460" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="509" r_length="49" r_score="0.939"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26237" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="563" r_length="54" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E366513" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28544" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAA-----C-TCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAAC</genome_strand>
        <mrna_strand>CTATTACTAGTTAGTAACAAAGTAGTATAAAGGGAAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAGGCCGTTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGATGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................TACAAACCCAGCCTTATATGGTGAACTAGCAAAGGGCCAGAGCCCAAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTGTGCCCATCCCATGTCCTCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E367615" ref_strand="+" ref_description="SGN-E367615 [cLPT-14-I15]">
      <seq>actagttagtaacaaagtagtataaagggaaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaggccgttgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagatggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgatacaaacccagccttatatggtgaactagcaaagggccagagcccaaagttcatggttttcgcgtgctctgactcacgagtgtgcccatcccatgtcctcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28839" stop="25937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28539" g_stop="28297" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="311" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="455" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="504" r_length="49" r_score="0.939"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26237" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="558" r_length="54" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E367615" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28539" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAA-----C-TCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAAC</genome_strand>
        <mrna_strand>ACTAGTTAGTAACAAAGTAGTATAAAGGGAAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAGGCCGTTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGATGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................TACAAACCCAGCCTTATATGGTGAACTAGCAAAGGGCCAGAGCCCAAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTGTGCCCATCCCATGTCCTCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E283468" ref_strand="+" ref_description="SGN-E283468 [cLER-12-D14]">
      <seq>tagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28833" stop="25937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28533" g_stop="28297" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="299" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="443" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="492" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26237" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="546" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E283468" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28533" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAAC</genome_strand>
        <mrna_strand>TAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E283432" ref_strand="+" ref_description="SGN-E283432 [cLER-12-F23]">
      <seq>tagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28822" stop="25937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28522" g_stop="28297" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="288" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="432" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="481" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26237" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="535" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E283432" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283432" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28522" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAAC</genome_strand>
        <mrna_strand>TAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E295189" ref_strand="+" ref_description="SGN-E295189 [cLET-20-N23]">
      <seq>aaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28805" stop="25940"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28505" g_stop="28297" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="271" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="415" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="464" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26240" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="515" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E295189" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28505" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26240"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTC</genome_strand>
        <mrna_strand>AAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E365231" ref_strand="+" ref_description="SGN-E365231 [cLPT-16-C19]">
      <seq>ctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaggccgttgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagatggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgatacaaacccagccttatatggtgaactagcaaagggccagagcccaaagttcatggttttcgcgtgctctgactcacgagtgtgcccatcccatgtcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28790" stop="25940"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28490" g_stop="28297" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="262" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="406" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="455" r_length="49" r_score="0.939"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26240" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="506" r_length="51" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E365231" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28490" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26240"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAA-----C-TCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTC</genome_strand>
        <mrna_strand>CTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAGGCCGTTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGATGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................TACAAACCCAGCCTTATATGGTGAACTAGCAAAGGGCCAGAGCCCAAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTGTGCCCATCCCATGTCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355919" ref_strand="+" ref_description="SGN-E355919 [cLHT-12-N24]">
      <seq>tatactattactagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgcctcactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaggccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgatcagatcactgctgaattgaaatcagcagatggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgatacaaacccagccttatatggtgaactagcaaagggccagagccctaagttcatggttntcgcgtgctctgactcacgagtgtgcccatcccatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28848" stop="25944"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28548" g_stop="28297" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="317" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="461" r_length="144" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="510" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.961" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26244" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="557" r_length="47" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E355919" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28548" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAA--C-TCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGT</genome_strand>
        <mrna_strand>TATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTCACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAGGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGATCAGATCACTGCTGAATTGAAATCAGCAGATGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................TACAAACCCAGCCTTATATGGTGAACTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTNTCGCGTGCTCTGACTCACGAGTGTGCCCATCCCATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278143" ref_strand="+" ref_description="SGN-E278143 [cLER-9-A5]">
      <seq>taacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttntcgcgtgctctgactcacgagtctgcccatcccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28830" stop="25945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28530" g_stop="28297" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="296" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="440" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="489" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26245" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="535" r_length="46" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E278143" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278143" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28530" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATG</genome_strand>
        <mrna_strand>TAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTNTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E283565" ref_strand="+" ref_description="SGN-E283565 [cLER-12-L20]">
      <seq>gaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagctttccttaagaaacctactcgtaccgttgccttctcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcataaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccacttgctgcagcaagagttgaccagatcactgctgaattgaaatcaacagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28794" stop="25945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28494" g_stop="28297" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="260" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="404" r_length="144" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="453" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26245" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="499" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E283565" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28494" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATG</genome_strand>
        <mrna_strand>GAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTTCCTTAAGAAACCTACTCGTACCGTTGCCTTCTCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCATAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCACTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAACAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286453" ref_strand="+" ref_description="SGN-E286453 [cLES-12-K17]">
      <seq>gaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28794" stop="25945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28494" g_stop="28297" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="260" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="404" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="453" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26245" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="499" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E286453" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286453" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28494" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATG</genome_strand>
        <mrna_strand>GAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278895" ref_strand="+" ref_description="SGN-E278895 [cLER-2-I5]">
      <seq>aattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28758" stop="25945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28458" g_stop="28297" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="224" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="368" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="417" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26245" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="463" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E278895" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28458" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATG</genome_strand>
        <mrna_strand>AATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E292491" ref_strand="+" ref_description="SGN-E292491 [cLET-16-B6]">
      <seq>tcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28776" stop="25951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28476" g_stop="28297" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="242" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="386" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="435" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26251" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="475" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E292491" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28476" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26251"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCAT</genome_strand>
        <mrna_strand>TCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725560" ref_strand="+" ref_description="SGN-E725560 [LA04AC04]">
      <seq>gaaagccgagcgactactagatagtagcaaggcagtctgaagtgcaggcagcagctaagggacgcttattgagaaatgtgaactcgctttaattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaaagtcatggttttcgcgtgctctgactcacgagtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28844" stop="25956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28554" g_stop="28297" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="0.895"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="321" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="465" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="514" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.961" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26256" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="549" r_length="35" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E725560" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28554" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAGCTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACT-GCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTG</genome_strand>
        <mrna_strand>GAAAGCCGAGCGACTACTAGATAGTAGCAAGGCAGTCTGAAGTGCAGGCAGCAGCTAAGGGACGCTTATTGAGAAATGTGAACTCGCTTTAATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAA....................................................................................GTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E281776" ref_strand="+" ref_description="SGN-E281776 [cLER-14-B19]">
      <seq>aaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28826" stop="25958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28526" g_stop="28297" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="292" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="436" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="485" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26258" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="518" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E281776" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28526" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTC</genome_strand>
        <mrna_strand>AAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E298503" ref_strand="+" ref_description="SGN-E298503 [cLET-41-I4]">
      <seq>aagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="26932" stop="25961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26632" g_stop="26522" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="160" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26290" g_stop="26261" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="190" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E298503" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>190</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26632" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGA</genome_strand>
        <mrna_strand>AAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E283886" ref_strand="+" ref_description="SGN-E283886 [cLER-13-C2]">
      <seq>gtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28823" stop="25962"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28523" g_stop="28297" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="289" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="433" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="482" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26262" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="511" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E283886" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28523" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACG</genome_strand>
        <mrna_strand>GTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E321004" ref_strand="+" ref_description="SGN-E321004 [cTOB-13-H21]">
      <seq>ttactagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28841" stop="25964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28541" g_stop="28297" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="307" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="451" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="500" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26264" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="527" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E321004" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28541" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCA</genome_strand>
        <mrna_strand>TTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E358635" ref_strand="+" ref_description="SGN-E358635 [cLHT-22-A22]">
      <seq>tagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgcctcactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaggccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgatcagatcactgctgaattgaaatcagcagatggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgatacaaacccagccttatatggtgaactagcaaagggccagagccctaagttcatggttttcgcgtgctctgactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28837" stop="25964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28537" g_stop="28297" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="306" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="450" r_length="144" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="499" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.961" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26264" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="526" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E358635" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28537" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAA--C-TCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCA</genome_strand>
        <mrna_strand>TAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTCACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAGGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGATCAGATCACTGCTGAATTGAAATCAGCAGATGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................TACAAACCCAGCCTTATATGGTGAACTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E282086" ref_strand="+" ref_description="SGN-E282086 [cLES-2-P18]">
      <seq>aacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28829" stop="25964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28529" g_stop="28297" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="295" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="439" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="488" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26264" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="515" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E282086" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282086" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28529" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCA</genome_strand>
        <mrna_strand>AACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E359088" ref_strand="+" ref_description="SGN-E359088 [cLHT-11-P11]">
      <seq>gcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgcctcactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaggccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgatcagatcactgctgaattgaaatcagcagatggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgatacaaacccagccttatatggtgaactagcaaagggccagagccctaagttcatggttttcgcgtgctctgactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28811" stop="25964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28511" g_stop="28297" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="280" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="424" r_length="144" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="473" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.961" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26264" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="500" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E359088" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359088" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28511" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAA--C-TCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCA</genome_strand>
        <mrna_strand>GCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTCACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAGGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGATCAGATCACTGCTGAATTGAAATCAGCAGATGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................TACAAACCCAGCCTTATATGGTGAACTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E294951" ref_strand="+" ref_description="SGN-E294951 [cLET-17-H17]">
      <seq>agaaatgtctactgcttccattggcaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcaccagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaggactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaaggtcatggttttcggcgggctctgactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28783" stop="26070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28483" g_stop="28297" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="249" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="393" r_length="144" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="442" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26264" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="470" r_length="28" r_score="0.852"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E294951" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28483" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTC-GCGTGCTCTGACTCA</genome_strand>
        <mrna_strand>AGAAATGTCTACTGCTTCCATTGGCAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCACCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAGGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................GTCATGGTTTTCGGCGGGCTCTGACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E293347" ref_strand="+" ref_description="SGN-E293347 [cLET-18-K15]">
      <seq>tcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28776" stop="25966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28476" g_stop="28297" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="242" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="386" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="435" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26266" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="460" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E293347" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28476" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACT</genome_strand>
        <mrna_strand>TCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E319451" ref_strand="+" ref_description="SGN-E319451 [cTOB-15-J16]">
      <seq>ctattactagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28844" stop="25969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28544" g_stop="28297" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="310" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="454" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="503" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26290" g_stop="26269" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="525" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E319451" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28544" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTG</genome_strand>
        <mrna_strand>CTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278639" ref_strand="-" ref_description="SGN-E278639 [cLER-10-P6]">
      <seq>aaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="26968" stop="26070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="155" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="204" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26290" g_stop="26279" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="216" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E278639" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>205</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278639" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
          <exon e_start="26290" e_stop="26279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTC</genome_strand>
        <mrna_strand>CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E334497" ref_strand="+" ref_description="SGN-E334497 [cTOD-23-F11]">
      <seq>tgaaatgtaaggttcttggcttcttagccatatgatattaaggcaaaagtaagatacaacattgaatctccaacgtacaaacctcatctacaatggattgaagctctcatttgcttagccatcactttcaacattgtctattggattggttatatgtaagagttcaaaagcagcaataatcaagaacacatcactagctatactattactagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="29046" stop="26073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28746" g_stop="28297" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="512" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="656" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26375" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="705" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E334497" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28746" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26375"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATGTAAGGTTCTTGGCTTCTTAGCCATATGATATTAAGGCAAAAGTAAGATACAACATTGAATCTCCAACGTACAAACCTCATCTACAATGGATTGAAGCTCTCATTTGCTTAGCCATCACTTTCAACATTGTCTATTGGATTGGTTATATGTAAGAGTTCAAAAGCAGCAATAATCAAGAACACATCACTAGCTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG</genome_strand>
        <mrna_strand>TGAAATGTAAGGTTCTTGGCTTCTTAGCCATATGATATTAAGGCAAAAGTAAGATACAACATTGAATCTCCAACGTACAAACCTCATCTACAATGGATTGAAGCTCTCATTTGCTTAGCCATCACTTTCAACATTGTCTATTGGATTGGTTATATGTAAGAGTTCAAAAGCAGCAATAATCAAGAACACATCACTAGCTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E281775" ref_strand="+" ref_description="SGN-E281775 [cLER-14-B17]">
      <seq>ctgcataccttatacctacaatcatggcggaaagaggaggttgnnaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28786" stop="26091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28481" g_stop="28297" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="230" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="292" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="436" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26391" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="469" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E281775" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281775" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28481" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAA</genome_strand>
        <mrna_strand>AAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E300615" ref_strand="+" ref_description="SGN-E300615 [cLET-45-D9]">
      <seq>tagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28837" stop="26094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28537" g_stop="28297" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="303" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="447" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26394" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="477" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E300615" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28537" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGC</genome_strand>
        <mrna_strand>TAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E367431" ref_strand="+" ref_description="SGN-E367431 [cLPT-7-D10]">
      <seq>ttagtaacaaagtagtataaagggaaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttcttcttctattccaagtctcatcagaaacgagcccggctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaggccgttgctgcactcgagaaactcctcagcgagaaagcagaacttggaccacttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagatggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgatacaaacccagccttatatggtgaactagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28834" stop="26094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28534" g_stop="28297" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="306" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="450" r_length="144" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26394" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="480" r_length="30" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E367431" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28534" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAA-----C-TCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGC</genome_strand>
        <mrna_strand>TTAGTAACAAAGTAGTATAAAGGGAAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGGCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAGGCCGTTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCACTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGATGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................TACAAACCCAGCCTTATATGGTGAACTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E290827" ref_strand="+" ref_description="SGN-E290827 [cLET-10-G20]">
      <seq>tcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28776" stop="26094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28476" g_stop="28297" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="242" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="386" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26394" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="416" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E290827" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28476" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGC</genome_strand>
        <mrna_strand>TCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E367007" ref_strand="+" ref_description="SGN-E367007 [cLPT-6-J23]">
      <seq>tagttagtaacaaagtagtataaagggaaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtttttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaggccgttgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagatggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgatacaaacccagccttatatggtgaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28837" stop="26097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28537" g_stop="28297" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="309" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="453" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26397" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="480" r_length="27" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E367007" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28537" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAA-----C-TCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCT</genome_strand>
        <mrna_strand>TAGTTAGTAACAAAGTAGTATAAAGGGAAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTTTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAGGCCGTTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGATGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................TACAAACCCAGCCTTATATGGTGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E365622" ref_strand="+" ref_description="SGN-E365622 [cLPT-12-I14]">
      <seq>aacaagtattataaagggaaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgaatttgcagagagaagaaatggcaaaagaatcctacgatcaggccgttgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagatggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgatacaaacccagccttatatggtgaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28829" stop="26097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28529" g_stop="28297" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27109" i_length="1188">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.764" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27108" g_stop="27038" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="309" r_length="71" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="453" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26397" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="480" r_length="27" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E365622" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28529" e_stop="28297"/>
          <exon e_start="27108" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAA-----C-TCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCT</genome_strand>
        <mrna_strand>AACAA-GTATTATAAAGGGAAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAGGCCGTTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGATGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................TACAAACCCAGCCTTATATGGTGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E325877" ref_strand="+" ref_description="SGN-E325877 [cTOC-12-A9]">
      <seq>aagggcatgcaaaagctcaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28815" stop="26097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28515" g_stop="28297" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="281" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="425" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26397" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="452" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E325877" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28515" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCT</genome_strand>
        <mrna_strand>AAGGGCATGCAAAAGCTCAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E365748" ref_strand="+" ref_description="SGN-E365748 [cLPT-8-H2]">
      <seq>tagttagtaacaaagtagtataaagggaaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaggccgttgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagatggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgatacaaacccagccttatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28837" stop="26219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28537" g_stop="28297" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="309" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="453" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26404" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="473" r_length="20" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E365748" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28537" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAA-----C-TCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATG</genome_strand>
        <mrna_strand>TAGTTAGTAACAAAGTAGTATAAAGGGAAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAGGCCGTTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGATGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................TACAAACCCAGCCTTATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E366176" ref_strand="+" ref_description="SGN-E366176 [cLPT-1-E15]">
      <seq>gttagttacaaagtagtataaagggaaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaggccgttgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagatggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgatacaaacccagccttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28835" stop="26219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28535" g_stop="28297" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="307" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="451" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26406" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="469" r_length="18" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E366176" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28535" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAA-----C-TCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATA</genome_strand>
        <mrna_strand>GTTAGTTACAAAGTAGTATAAAGGGAAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAGGCCGTTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGATGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................TACAAACCCAGCCTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725585" ref_strand="+" ref_description="SGN-E725585 [LA04AE11]">
      <seq>ttgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaaatcctacgatcaagccattgctgcacttcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagaacactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacacgaaagctggctttaattcctttcaggctgagaaatatgacacaaacccagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28756" stop="26222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28456" g_stop="28297" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="224" r_length="64" r_score="0.935"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="368" r_length="144" r_score="0.951"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26412" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="380" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E725585" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28456" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAG-AATCCTACGATCAAGCCATTGCTGCAC-TCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTA-TTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGC</genome_strand>
        <mrna_strand>TTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAAATCCTACGATCAAGCCATTGCTGCACTTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGAACACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACACGAAAGCTGGCTTTAATTCCTTTC-AGGCTGAGAAATATGA..................................................................................................CACAAACCCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E354693" ref_strand="+" ref_description="SGN-E354693 [cLHT-5-N18]">
      <seq>tcaactgcttccattaacaattgcctcactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaggccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgatcagatcactgctgaattgaaatcagcagatggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgatacaaaccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28776" stop="26219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28476" g_stop="28297" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="245" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="389" r_length="144" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26414" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="399" r_length="10" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E354693" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28476" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAA--C-TCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCA</genome_strand>
        <mrna_strand>TCAACTGCTTCCATTAACAATTGCCTCACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAGGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGATCAGATCACTGCTGAATTGAAATCAGCAGATGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................TACAAACCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E476118" ref_strand="+" ref_description="SGN-E476118 [cSTB-43-K10]">
      <seq>aaagtagtataaaggtcaagcaaaagctaaaggaagctcattgagacatgtcaactgcttccattaacaattgccttactatctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttctattccaagtctcatcagaaacgagcccgtcttcgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcatacgatcaggccattgctgcactcgagaaactcctcagcgagaaggcagaacttggaccagttgctgcagcaagagttgaccagattactgctgaattgaaatcagcagatggcagcaaagccttcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgatacaaaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28826" stop="26219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28526" g_stop="28297" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="289" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="433" r_length="144" r_score="0.958"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26415" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="442" r_length="9" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E476118" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E476118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28526" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCC</genome_strand>
        <mrna_strand>AAAGTAGTATAAAGGTCAAGCAAAAGCTAAAGGAAGCTCATTGAGACATGTCAACTGCTTCCATTAACAATTGCCTTACTATCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAA--C-TCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTCGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCATACGATCAGGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAGGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATTACTGCTGAATTGAAATCAGCAGATGGCAGCAAAGCCTTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................TACAAACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E288897" ref_strand="+" ref_description="SGN-E288897 [cLES-17-P22]">
      <seq>aaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattctaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28816" stop="26222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28516" g_stop="28297" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="282" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="426" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26415" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="435" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E288897" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288897" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28516" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCC</genome_strand>
        <mrna_strand>AAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCTACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E289724" ref_strand="+" ref_description="SGN-E289724 [cLET-4-H17]">
      <seq>aaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgacccttgtgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="27400" stop="26222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="74" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="218" r_length="144" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26423" g_stop="26415" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="227" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E289724" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>215</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289724" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCC</genome_strand>
        <mrna_strand>AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTTGTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E471815" ref_strand="+" ref_description="SGN-E471815 [cSTB-25-D10]">
      <seq>gtgagtaacaaagtaatataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactatctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttctccttctattccaagtctcatcagaaacgagcccgtctttgctgctcctactcgcatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaggccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagattactgctgaattgaaatcagcagatggaagcaaggccttcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgatacaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28835" stop="26219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28535" g_stop="28297" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="298" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="442" r_length="144" r_score="0.965"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26416" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="450" r_length="8" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E471815" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E471815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28535" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACC</genome_strand>
        <mrna_strand>GTGAGTAACAAAGTAATATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTATCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTC-TC--CTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCTCCTACTCGCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAGGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATTACTGCTGAATTGAAATCAGCAGATGGAAGCAAGGCCTTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................TACAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355616" ref_strand="+" ref_description="SGN-E355616 [cLHT-1-I20]">
      <seq>tgcttccattaacaattgcctcactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaggccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgatcagatcactgctgaattgaaatcagcagatggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgatacaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28771" stop="26219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28471" g_stop="28297" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="240" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="384" r_length="144" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26416" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="392" r_length="8" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E355616" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28471" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAA--C-TCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACC</genome_strand>
        <mrna_strand>TGCTTCCATTAACAATTGCCTCACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAGGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGATCAGATCACTGCTGAATTGAAATCAGCAGATGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................TACAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E283210" ref_strand="+" ref_description="SGN-E283210 [cLER-17-D24]">
      <seq>cttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28752" stop="26222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28452" g_stop="28297" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="218" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="362" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26416" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="370" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E283210" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28452" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACC</genome_strand>
        <mrna_strand>CTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E471224" ref_strand="+" ref_description="SGN-E471224 [cSTB-23-A4]">
      <seq>gaagaaatggcaaaagaatcctacgatcaggccattgctgcactcgagaaactcctcagtgagaaagcagaacttggaccagttgctgcagcaagagttgaccagattactgctgaattgaaatcagcagatggcagcaaggccttcgaccctgttgagcacatgaaagctggctttattcatttcaaaactgagaaatatgatacaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="27396" stop="26219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27096" g_stop="27038" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="203" r_length="144" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26423" g_stop="26416" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="211" r_length="8" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E471224" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>211</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E471224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27096" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACC</genome_strand>
        <mrna_strand>GAAGAAATGGCAAAAGAATCCTACGATCAGGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................TGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATTACTGCTGAATTGAAATCAGCAGATGGCAGCAAGGCCTTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAAACTGAGAAATATGA..................................................................................................TACAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E358187" ref_strand="+" ref_description="SGN-E358187 [cLHT-23-B11]">
      <seq>atactattactagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgcctcactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaggccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccatttgctgcagcaagagttgatcagatcactgctgaattgaaatcagcagatggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgatacaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28847" stop="26219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28547" g_stop="28297" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="316" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="460" r_length="144" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26417" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="467" r_length="7" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E358187" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28547" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAA--C-TCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAAC</genome_strand>
        <mrna_strand>ATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTCACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAGGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCATTTGCTGCAGCAAGAGTTGATCAGATCACTGCTGAATTGAAATCAGCAGATGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................TACAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E475742" ref_strand="+" ref_description="SGN-E475742 [cSTB-41-J21]">
      <seq>attactagtgagtaacaaagtggtataaagggcaagcaaaagccaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactatctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtcttcgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaggccattgctgcactcgagaaactcctcactgagaaagcagaacttggaccagttgctgcagcaagagttgaccagattactgctgaattgaaatcagcagatggcagcaaggccttcgaccctgttgagcacatgaaagctggctttattcatttcaaaactgagaaatatgatacaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28842" stop="26219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28542" g_stop="28297" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="308" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="452" r_length="144" r_score="0.958"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26417" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="459" r_length="7" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E475742" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E475742" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28542" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAAC</genome_strand>
        <mrna_strand>ATTACTAGTGAGTAACAAAGTGGTATAAAGGGCAAGCAAAAGCCAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTATCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTCGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAGGCCATTGCTGCACTCGAGAAACTCCTCAC....................................................................................................................................................................................................................................................................................................................................................................................TGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATTACTGCTGAATTGAAATCAGCAGATGGCAGCAAGGCCTTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAAACTGAGAAATATGA..................................................................................................TACAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E470764" ref_strand="+" ref_description="SGN-E470764 [cSTB-20-O6]">
      <seq>attactagtgagtaacaaagtagtataaagggcaagcaaaagccaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactatctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtcttcgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaggccattgctgcactcgagaaactcctcagtgagaaagcagaacttggaccagttgctgcagcaagagttgaccagattactgctgaattgaaatcagcagatggcagcaaggccttcgaccctgttgagcacatgaaagctggctttattcatttcaaaactgagaaatatgatacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28842" stop="26219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28542" g_stop="28297" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="308" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="452" r_length="144" r_score="0.958"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26423" g_stop="26418" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="458" r_length="6" r_score="0.833"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E470764" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E470764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28542" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
          <exon e_start="26423" e_stop="26418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAA</genome_strand>
        <mrna_strand>ATTACTAGTGAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCCAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTATCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTCGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAGGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................TGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATTACTGCTGAATTGAAATCAGCAGATGGCAGCAAGGCCTTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAAACTGAGAAATATGA..................................................................................................TACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E295625" ref_strand="+" ref_description="SGN-E295625 [cLET-25-K21]">
      <seq>gctatactattactagttagagggaaagtagtataaagggcatgcaacacctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaaggctcatcataaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattccaccctgttgagcacatgaaagctggctttattcattttaagactgagaaatatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28850" stop="26222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28550" g_stop="28297" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="316" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="460" r_length="144" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E295625" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28550" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA</genome_strand>
        <mrna_strand>GCTATACTATTACTAGTTAGAGGGAAAGTAGTATAAAGGGCATGCAACACCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGGCTCATCATAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCCACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTTAAGACTGAGAAATATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E402664" ref_strand="+" ref_description="SGN-E402664 [PPC-8-I12]">
      <seq>gaatattactagtgagtaacaaagtagtataaaggtcaagcaaaagctaaaggaagctcattgagacatgtcaactgcttccattaacaattgccttactatctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttctattccaagtctcatcagaaacgagcccgtcttcgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcatacgatcaggccattgctgcactcgagaaactcctcagcgagaaggcagaacttggaccagttgctgcagcaagagttgaccagattactgctgaattgaaatcagcagatggcagcaaagccttcgaccctgttgagcacatgaaagctggctttattcatttcaagactgaaaaatatgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28845" stop="26219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28546" g_stop="28297" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="309" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="453" r_length="144" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E402664" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E402664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28546" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA</genome_strand>
        <mrna_strand>GAATATTACTAGTGAGTAACAAAGTAGTATAAAGGTCAAGCAAAAGCTAAAGGAAGCTCATTGAGACATGTCAACTGCTTCCATTAACAATTGCCTTACTATCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAA--C-TCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTCGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCATACGATCAGGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAGGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATTACTGCTGAATTGAAATCAGCAGATGGCAGCAAAGCCTTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAAAAATATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E477315" ref_strand="+" ref_description="SGN-E477315 [cSTB-47-H20]">
      <seq>taacaaagtaatataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactatctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttctccttctattccaagtctcatcagaaacgagcccgtctttgctgctcctactcgcatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaggccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagattactgctgaattgaaatcagcagatggaagcaaggccttcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28830" stop="26222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28530" g_stop="28297" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="293" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="437" r_length="144" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E477315" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E477315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28530" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA</genome_strand>
        <mrna_strand>TAACAAAGTAATATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTATCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTC-TC--CTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCTCCTACTCGCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAGGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATTACTGCTGAATTGAAATCAGCAGATGGAAGCAAGGCCTTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E468779" ref_strand="+" ref_description="SGN-E468779 [cSTB-6-I11]">
      <seq>gcaaagtagtataaagggccaagcaaaagccaaaggaagctcattgagaaatgtcaacctgcttccattaaccaattgccttactatctcccctgctcaagccttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaacctcttcttcttcttcttctattccaagtctcatcagaaaccgagcccgtcttcgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctaccgatcaggccattgctgcacctcgagaaactcctcagtgagaaagcagaacttggaccagttgctgcagcaagagttgaccagattacctgctgaattgaaatcagcagatggcagcaaggccttcgaccctgttgagccaccatgaaagctggctttattcatttcaaaactgagaaatatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28827" stop="26222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28528" g_stop="28297" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.971" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="302" r_length="64" r_score="0.919"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="449" r_length="147" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E468779" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E468779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28528" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAGTAGTATAAAGGG-CAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAA-CTGCTTCCATTAA-CAATTGCCTTACTCTCTCCCCTGCTCAAG-CTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAA-CTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAA-CGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTA-CGATCAAGCCATTGCTGCA-CTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCA-CTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAG-CA-CATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA</genome_strand>
        <mrna_strand>GCAAAGTAGTATAAAGGGCCAAGCAAAAGCCAAAGGAAGCTCATTGAGAAATGTCAACCTGCTTCCATTAACCAATTGCCTTACTATCTCCCCTGCTCAAGCCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACCTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACCGAGCCCGTCTTCGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACCGATCAGGCCATTGCTGCACCTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................TGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATTACCTGCTGAATTGAAATCAGCAGATGGCAGCAAGGCCTTCGACCCTGTTGAGCCACCATGAAAGCTGGCTTTATTCATTTCAAAACTGAGAAATATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E279852" ref_strand="+" ref_description="SGN-E279852 [cLER-8-N5]">
      <seq>taacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28762" stop="26222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28462" g_stop="28297" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="228" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="372" r_length="144" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E279852" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28462" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA</genome_strand>
        <mrna_strand>TAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E473444" ref_strand="+" ref_description="SGN-E473444 [cSTB-32-K20]">
      <seq>caattgccttactatctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtcttcgctgcccctactgccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctactatcaggccattgctgcactcgagaaactcctcagtgagaaagcagaacttggaccagttgctgcagcaagagttgaccacattactgctgaattgaaatcagcagatggcagcaaggccttcgaccctgttgagcacatgaaagctggctttattcatttcaaaactgagaaatatgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28759" stop="26219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28459" g_stop="28297" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="225" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26522" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="369" r_length="144" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E473444" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E473444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28459" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA</genome_strand>
        <mrna_strand>CAATTGCCTTACTATCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTCGCTGCCCCTACTGCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACTATCAGGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................TGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCACATTACTGCTGAATTGAAATCAGCAGATGGCAGCAAGGCCTTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAAACTGAGAAATATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E475744" ref_strand="+" ref_description="SGN-E475744 [cSTB-41-L5]">
      <seq>gctcattgagacatgtcaactgcttccattaacaattgccttactatctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttctattccaagtctcatcagaaacgagcccgtcttcgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcatacgatcaggccattgctgcactcgagaaactcctcagcgagaaggcagaacttggaccagttgctgcagcaagagttgaccagattactgctgaattgaaatcagcagatggcagcaaagccttcgaccctgttgagcacatgaaagctggctttattcatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28791" stop="26239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28491" g_stop="28297" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="254" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26539" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="381" r_length="127" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E475744" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E475744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28491" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTC</genome_strand>
        <mrna_strand>GCTCATTGAGACATGTCAACTGCTTCCATTAACAATTGCCTTACTATCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAA--C-TCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTCGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCATACGATCAGGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAGGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATTACTGCTGAATTGAAATCAGCAGATGGCAGCAAAGCCTTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E277760" ref_strand="-" ref_description="SGN-E277760 [cLEL-5-H13](-)">
      <seq>gcacgaggttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28839" stop="26251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28541" g_stop="28297" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="308" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26551" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="423" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E277760" ref_strand="-">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277760" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="28541" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTA-GTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGC</genome_strand>
        <mrna_strand>GCACGAGGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E470193" ref_strand="+" ref_description="SGN-E470193 [cSTB-17-C20]">
      <seq>ctagtgagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactatctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttctattccaagtctcatcagaaacgagcccgtcttcgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaggccattgctgcactcgagaaactcctcagcgagaaggcagaacttggaccagttgctgcagcaagagttgaccagattactgctgaattgaaatcagcagatggcagcaaggccttcgaccctgttgagcacatgaaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28838" stop="26254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28538" g_stop="28297" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="301" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26554" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="413" r_length="112" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E470193" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E470193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28538" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCT</genome_strand>
        <mrna_strand>CTAGTGAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTATCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAA--C-TCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTCGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAGGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAGGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATTACTGCTGAATTGAAATCAGCAGATGGCAGCAAGGCCTTCGACCCTGTTGAGCACATGAAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E470205" ref_strand="+" ref_description="SGN-E470205 [cSTB-17-E24]">
      <seq>ctagtgagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactatctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttctattccaagtctcatcagaaacgagcccgtcttcgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaggccattgctgcactcgagaaactcctcagcgagaaggcagaacttggaccagttgctgcagcaagagttgaccagattactgctgaattgaaatcagcagatggcagcaaggccttcgaccctgttgagcacatgaaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28838" stop="26254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28538" g_stop="28297" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="301" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26554" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="413" r_length="112" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E470205" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E470205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28538" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCT</genome_strand>
        <mrna_strand>CTAGTGAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTATCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAA--C-TCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTCGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAGGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAGGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATTACTGCTGAATTGAAATCAGCAGATGGCAGCAAGGCCTTCGACCCTGTTGAGCACATGAAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E471587" ref_strand="+" ref_description="SGN-E471587 [cSTB-24-F5]">
      <seq>taacaaagtagtataaagggcaagcaaaagccaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactatctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtcttcgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaggccattgctgcactcgagaaactcctcagtgagaaagcagaacttggaccagttgctgcagcaagagttgaccagattactgctgaattgaaatcagcagatggcagcaaggccttcgaccctgttgagcacatgaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28830" stop="26255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28530" g_stop="28297" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="296" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26555" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="407" r_length="111" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E471587" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E471587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28530" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGC</genome_strand>
        <mrna_strand>TAACAAAGTAGTATAAAGGGCAAGCAAAAGCCAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTATCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTCGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAGGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................TGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATTACTGCTGAATTGAAATCAGCAGATGGCAGCAAGGCCTTCGACCCTGTTGAGCACATGAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E476672" ref_strand="+" ref_description="SGN-E476672 [cSTB-45-J17]">
      <seq>atgattttaaggcaaaagtaagatgcaacattgaatctccaacgtacaaacctcatctacaatggattgaagctctcatttgcttagccatcactttcaacattgtctattggattggttatatgtaagagtcctcaagaagcaataatcaaggacccatccactagctataatattactagtgagtaacaaagtaatataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactatctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttctccttctattccaagtctcatcagaaacgagcccgtctttgctgctcctactcgcatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaggccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagattactgctgaattgaaatcagcagatggaagcaaggccttcgaccctgttgagcacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="29015" stop="26260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28715" g_stop="28297" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="417" r_length="417" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="479" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26560" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="585" r_length="106" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E476672" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E476672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28715" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26560"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATATTAAGGCAAAAGTAAGATACAACATTGAATCTCCAACGTACAAACCTCATCTACAATGGATTGAAGCTCTCATTTGCTTAGCCATCACTTTCAACATTGTCTATTGGATTGGTTATATGTAAGAGTTCAAAAGCAGCAATAATCAAGAACACAT-CACTAGCTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATG</genome_strand>
        <mrna_strand>ATGATTTTAAGGCAAAAGTAAGATGCAACATTGAATCTCCAACGTACAAACCTCATCTACAATGGATTGAAGCTCTCATTTGCTTAGCCATCACTTTCAACATTGTCTATTGGATTGGTTATATGTAAGAGTCCTCAAGAAGCAATAATCAAGGACCCATCCACTAGCTATAATATTACTAGTGAGTAACAAAGTAATATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTATCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTC-TC--CTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCTCCTACTCGCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAGGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATTACTGCTGAATTGAAATCAGCAGATGGAAGCAAGGCCTTCGACCCTGTTGAGCACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E202739" ref_strand="+" ref_description="SGN-E202739 [cLEB-1-E10]">
      <seq>gcacgagtagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28839" stop="26267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28541" g_stop="28297" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="306" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26567" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="405" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E202739" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28541" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGA</genome_strand>
        <mrna_strand>GCACGAGT-AGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E470418" ref_strand="+" ref_description="SGN-E470418 [cSTB-18-M3]">
      <seq>gtgagtaacaaagtagtataaaggtcaagcaaaagctaaaggaagctcattgagacatgtcaactgcttccattaacaattgccttactatctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttctattccaagtctcatcagaaacgagcccgtcttcgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcatacgatcaggccattgctgcactcgagaaactcctcagcgagaaggcagaacttggaccagttgctgcagcaagagttgaccagattactgctgaattgaaatcagcagatggcagcaaagccttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28835" stop="26277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28535" g_stop="28297" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="298" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26577" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="387" r_length="89" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E470418" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E470418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28535" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCG</genome_strand>
        <mrna_strand>GTGAGTAACAAAGTAGTATAAAGGTCAAGCAAAAGCTAAAGGAAGCTCATTGAGACATGTCAACTGCTTCCATTAACAATTGCCTTACTATCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAA--C-TCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTCGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCATACGATCAGGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAGGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATTACTGCTGAATTGAAATCAGCAGATGGCAGCAAAGCCTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E470425" ref_strand="+" ref_description="SGN-E470425 [cSTB-18-O3]">
      <seq>gacatgtcaactgcttccattaacaatcgccttactatctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttctattccaagtctcatcagaaacgagcccgtcttcgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcatacgatcaggccattgctgcactcgagaaactcctcagcgagaaggcagaacttggaccacttgctgcagcaagagttgaccagattactgctgaattgaaatcagcagatggcagcaaagcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28782" stop="26279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28482" g_stop="28297" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="245" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26579" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="332" r_length="87" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E470425" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E470425" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28482" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATT</genome_strand>
        <mrna_strand>GACATGTCAACTGCTTCCATTAACAATCGCCTTACTATCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAA--C-TCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTCGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCATACGATCAGGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAGGCAGAACTTGGACCACTTGCTGCAGCAAGAGTTGACCAGATTACTGCTGAATTGAAATCAGCAGATGGCAGCAAAGCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E333504" ref_strand="+" ref_description="SGN-E333504 [cTOD-20-F4]">
      <seq>tattactagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccaattgctgcagcaagagttgaccagatcactgctgaattgaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28843" stop="26300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28543" g_stop="28297" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="309" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26600" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="375" r_length="66" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E333504" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28543" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATC</genome_strand>
        <mrna_strand>TATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAATTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E367785" ref_strand="+" ref_description="SGN-E367785 [cLPT-14-B2]">
      <seq>caaagtagtataaagggaaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaggccgttgctgcactcgagaaactcctcagcgagaaagcagaacttggaccacttgctgcagcaagagttgaccagatcactgctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28827" stop="26308"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28527" g_stop="28297" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="299" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26608" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="357" r_length="58" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E367785" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28527" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAA-----C-TCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAA</genome_strand>
        <mrna_strand>CAAAGTAGTATAAAGGGAAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAGGCCGTTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCACTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284295" ref_strand="+" ref_description="SGN-E284295 [cLER-16-P23]">
      <seq>agtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28832" stop="26330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28532" g_stop="28297" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="298" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26630" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="334" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E284295" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>334</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28532" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAG</genome_strand>
        <mrna_strand>AGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E365679" ref_strand="+" ref_description="SGN-E365679 [cLPT-8-G7]">
      <seq>taaagggaaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaggccgttgctgcactcgagaaactcctcagcgagaaagcagaacttggacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28817" stop="26345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28517" g_stop="28297" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="289" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26645" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="310" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E365679" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>304</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28517" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAA-----C-TCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACC</genome_strand>
        <mrna_strand>TAAAGGGAAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAGGCCGTTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278276" ref_strand="-" ref_description="SGN-E278276 [cLEL-2-C11](-)">
      <seq>gcaccagtaacaaagtagtataaaggtcatgcaaaagctaaaggaagctcatggggaaatgtcaactgcttccatctacaactgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcagaagaatcctacgatcaagccattgctgcactcgagaaactactcagcgagaaagcagaacttggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28832" stop="26346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28537" g_stop="28297" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="303" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26665" g_stop="26646" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="323" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E278276" ref_strand="-">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278276" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="28537" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
          <exon e_start="26665" e_stop="26646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGAC</genome_strand>
        <mrna_strand>GCACCAGTAACAAAGTAGTATAAAGGTCATGCAAAAGCTAAAGGAAGCTCATGGGGAAATGTCAACTGCTTCCATCTACAACTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAGAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTACTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E281523" ref_strand="-" ref_description="SGN-E281523 [cLEL-1-H1](-)">
      <seq>gcacgagtagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactccttaacgagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28839" stop="26739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28541" g_stop="28297" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="306" r_length="62" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E281523" ref_strand="-">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>307</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281523" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="28541" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG</genome_strand>
        <mrna_strand>GCACGAGT-AGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E299136" ref_strand="+" ref_description="SGN-E299136 [cLET-42-J19]">
      <seq>tactatttagtaacatagtagtctaaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28840" stop="26738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28540" g_stop="28297" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27038" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="306" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E299136" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28540" e_stop="28297"/>
          <exon e_start="27099" e_stop="27038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG</genome_strand>
        <mrna_strand>TACTATTTAGTAACATAGTAGTCTAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726334" ref_strand="+" ref_description="SGN-E726334 [LA11CB03]">
      <seq>ctatactattactagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28849" stop="26740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28549" g_stop="28297" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27040" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="313" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E726334" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>313</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28549" e_stop="28297"/>
          <exon e_start="27099" e_stop="27040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTC</genome_strand>
        <mrna_strand>CTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E470939" ref_strand="+" ref_description="SGN-E470939 [cSTB-21-I20]">
      <seq>aatattactagtgagtaacaaagcagtttttagggcatgcaaaagccaaaggaagctcattgagaaatgtcaactgcttccatttacaattgccttactatctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacaagcccgtcttcgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatccttcgatctggccattgctgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28845" stop="26755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28545" g_stop="28297" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.971" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27055" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="294" r_length="45" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E470939" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>294</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E470939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28545" e_stop="28297"/>
          <exon e_start="27099" e_stop="27055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCA</genome_strand>
        <mrna_strand>AATATTACTAGTGAGTAACAAAGCAGTTTTTAGGGCATGCAAAAGCCAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTTACAATTGCCTTACTATCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACAAGCCCGTCTTCGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTTCGATCTGGCCATTGCTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725563" ref_strand="+" ref_description="SGN-E725563 [LA04AC08]">
      <seq>gttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28835" stop="26756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28535" g_stop="28297" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27056" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="283" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E725563" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>283</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28535" e_stop="28297"/>
          <exon e_start="27099" e_stop="27056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGC</genome_strand>
        <mrna_strand>GTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E280775" ref_strand="-" ref_description="SGN-E280775 [cLEL-6-I14](-)">
      <seq>gcacgagcaaagtagtataaagggcaagctaaagctaaaggaagctcattgagaaaggtcaactgcttccattaacaaccgctttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28829" stop="26766"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28534" g_stop="28297" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27066" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="272" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E280775" ref_strand="-">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>272</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280775" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="28534" e_stop="28297"/>
          <exon e_start="27099" e_stop="27066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAG</genome_strand>
        <mrna_strand>GCACGAGCAAAGTAGTATAAAGGGCAAGCTAAAGCTAAAGGAAGCTCATTGAGAAAGGTCAACTGCTTCCATTAACAACCGCTTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E378229" ref_strand="+" ref_description="SGN-E378229 [TUS-45-G22]">
      <seq>aaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactnccatcatcaacccattgtgagagaaaaatggcaaaagaatctacgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28798" stop="26769"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28498" g_stop="28297" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.971" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27069" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="230" r_length="29" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E378229" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>233</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28498" e_stop="28297"/>
          <exon e_start="27099" e_stop="27069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATC</genome_strand>
        <mrna_strand>AAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTNCCATCATCAA-CCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAA-AAATGGCAAAAGAAT-CTACGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E404588" ref_strand="+" ref_description="SGN-E404588 [PPC-14-F5]">
      <seq>agttttaaagcaaaagtaagatgcaacattgaatctccaacgtacaaacctcatctacaatggattgaagctctcatttgcttagccatcactttcaacattgtctattggattggttatatgtaagagtcctcaagaagcaataatcaaggacccatccactagctataatattactagtgagtaacaaagtaatataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactatctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttctccttctattccaagtctcatcagaaacgagcccgtctttgctgctcctactcgcatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="29011" stop="26771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28713" g_stop="28297" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.971" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27071" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="444" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E404588" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E404588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28713" e_stop="28297"/>
          <exon e_start="27099" e_stop="27071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATTAAGGCAAAAGTAAGATACAACATTGAATCTCCAACGTACAAACCTCATCTACAATGGATTGAAGCTCTCATTTGCTTAGCCATCACTTTCAACATTGTCTATTGGATTGGTTATATGTAAGAGTTCAAAAGCAGCAATAATCAAGAACACAT-CACTAGCTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGA</genome_strand>
        <mrna_strand>AGTTTTAAAGCAAAAGTAAGATGCAACATTGAATCTCCAACGTACAAACCTCATCTACAATGGATTGAAGCTCTCATTTGCTTAGCCATCACTTTCAACATTGTCTATTGGATTGGTTATATGTAAGAGTCCTCAAGAAGCAATAATCAAGGACCCATCCACTAGCTATAATATTACTAGTGAGTAACAAAGTAATATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTATCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTC-TC--CTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCTCCTACTCGCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284193" ref_strand="+" ref_description="SGN-E284193 [cLER-16-M13]">
      <seq>tgaaatgtaaggttcttggcttcttagccatatgatattaaggcaaaagtaagatacaacattgaatctccaacgtacaaacctcatctacaatggattgaagctctcatttgcttagccatcactttcaacattgtctattggattggttatatgtaagagttcaaaagcagcaataatcaagaacacatcactagctatactattactagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="29046" stop="26780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28746" g_stop="28297" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27080" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="470" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E284193" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28746" e_stop="28297"/>
          <exon e_start="27099" e_stop="27080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATGTAAGGTTCTTGGCTTCTTAGCCATATGATATTAAGGCAAAAGTAAGATACAACATTGAATCTCCAACGTACAAACCTCATCTACAATGGATTGAAGCTCTCATTTGCTTAGCCATCACTTTCAACATTGTCTATTGGATTGGTTATATGTAAGAGTTCAAAAGCAGCAATAATCAAGAACACATCACTAGCTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGA</genome_strand>
        <mrna_strand>TGAAATGTAAGGTTCTTGGCTTCTTAGCCATATGATATTAAGGCAAAAGTAAGATACAACATTGAATCTCCAACGTACAAACCTCATCTACAATGGATTGAAGCTCTCATTTGCTTAGCCATCACTTTCAACATTGTCTATTGGATTGGTTATATGTAAGAGTTCAAAAGCAGCAATAATCAAGAACACATCACTAGCTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E358322" ref_strand="+" ref_description="SGN-E358322 [cLHT-28-G20]">
      <seq>tcaactttttccattttcaattgcctcactctctccccgactcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttcttctattccaagtctcatcaaaaacgagcccggctttgctggccctactcccatcatcaaccccattgtgagagaagaaatggcaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28776" stop="26781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28476" g_stop="28297" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.971" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27099" g_stop="27081" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="202" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E358322" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>199</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28476" e_stop="28297"/>
          <exon e_start="27099" e_stop="27081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAA--C-TCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAG</genome_strand>
        <mrna_strand>TCAACTTTTTCCATTTTCAATTGCCTCACTCTCTCCCCGACTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAAAAACGAGCCCGGCTTTGCTGGCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E390600" ref_strand="+" ref_description="SGN-E390600 [TUS-47-C6]">
      <seq>ttgaaatgtaaggttcttggcttcttagccatatgatattaaggcaaaagtaagatacaacattgaatctccaacgtacaaacctcatctacaatggattgaagctctcatttgcttagccatcactttcaacattgtctattggattggttatatgtaagagttcaaaagcagcaataatcaagaacacatcactagctatactattactagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcacccccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="29047" stop="28000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28747" g_stop="28300" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E390600" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28747" e_stop="28300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAATGTAAGGTTCTTGGCTTCTTAGCCATATGATATTAAGGCAAAAGTAAGATACAACATTGAATCTCCAACGTACAAACCTCATCTACAATGGATTGAAGCTCTCATTTGCTTAGCCATCACTTTCAACATTGTCTATTGGATTGGTTATATGTAAGAGTTCAAAAGCAGCAATAATCAAGAACACATCACTAGCTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATT</genome_strand>
        <mrna_strand>TTGAAATGTAAGGTTCTTGGCTTCTTAGCCATATGATATTAAGGCAAAAGTAAGATACAACATTGAATCTCCAACGTACAAACCTCATCTACAATGGATTGAAGCTCTCATTTGCTTAGCCATCACTTTCAACATTGTCTATTGGATTGGTTATATGTAAGAGTTCAAAAGCAGCAATAATCAAGAACACATCACTAGCTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCACCCCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E289269" ref_strand="+" ref_description="SGN-E289269 [cLES-18-K18]">
      <seq>aagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28809" stop="28000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28509" g_stop="28300" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E289269" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>210</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289269" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28509" e_stop="28300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATT</genome_strand>
        <mrna_strand>AAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E472572" ref_strand="+" ref_description="SGN-E472572 [cSTB-29-A2]">
      <seq>attactagtgagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactatctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttctattccaagtctcatcagaaacgagcccgtcttcgctgcccctactcccatcatcaaccccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28842" stop="28001"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28542" g_stop="28301" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E472572" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>242</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E472572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28542" e_stop="28301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCAT</genome_strand>
        <mrna_strand>ATTACTAGTGAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTATCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAA--C-TCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTCGCTGCCCCTACTCCCATCATCAACCCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E470973" ref_strand="+" ref_description="SGN-E470973 [cSTB-21-P15]">
      <seq>agccaaagagaagctcatagagaaatgtcaactgcttccattaacaattgccttactatctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaagagctaggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtcttcgctgcccctactcccatcatcaacccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28802" stop="28002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28502" g_stop="28302" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E470973" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>201</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E470973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28502" e_stop="28302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTAAAG-GAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAG-GCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCA</genome_strand>
        <mrna_strand>AGCCAAAGAGAAGCTCATAGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTATCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGAGCTAGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTCGCTGCCCCTACTCCCATCATCAACCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E345097" ref_strand="+" ref_description="SGN-E345097 [cTOF-22-O16]">
      <seq>attactagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcagggctggggcactctcttcttcttcttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="28842" stop="28063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28542" g_stop="28363" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E345097" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>180</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28542" e_stop="28363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCT</genome_strand>
        <mrna_strand>ATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAGGGCTGGGGCACTC-TCTTCTTCTTCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E356679" ref_strand="+" ref_description="SGN-E356679 [cTOS-21-E23]">
      <seq>tcagttcaagtttcgttaaaggatttattcttagaagaacgggaaccgctgtcgtcgtcatcttccgaggtcgatgagttggagagtgtacctccgggaacgtattgtgtatggaagccgaatataaccgagccttcaccaagcagatgtaagaagagtaattcaacgggatcggcgtttaagcggtggaatatccgagatttgatgcgccggagcaacagtgacggtaaggacagttttttatttctgacgccggaaaaaggattgagaaatgaaacatccaaagcaaaggactcagcggaagcgtctaaaattgccggaaaattgaaggcaaagggcaacagtagcagcggtaacaaaacatcttcgatgacggacgtttatttacggaaccaagcggcaaaggaaatggataagaataggcgcaaatcatatttaccataccggcgagatctggtaggttttttcgctagtgccagcaatattggtagaacttttcctcctttttaacaaccttccattttttaatcaagtgtttgtaaatatctaaatgaaagaacatgtgcgatgattcctgaatgatttagttgttatgctcccatttgtttaaaggatgatcatccacctcgataataattttcgatgaattttcatattatctatgaattaaatttgataaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="36408" stop="35129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36108" g_stop="35423" g_length="686"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="685" r_length="685" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E356679" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36108" e_stop="35423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTTCAAGTTTCGTTAAAGGATTTATTCTTAGAAGAACGGGAACCGCTGTCGTCGTCATCTTCCGAGGTCGATGAGTTGGAGAGTGTACCTCCGGGAACGTATTGTGTATGGAAGCCGAATATAACCGAGCCTTCACCAAGCAGATGTAAGAAGAGTAATTCAACGGGATCGGCGTTTAAGCGGTGGAATATCCGAGATTTGATGCGCCGGAGCAACAGTGACGGTAAGGACAGTTTTTTATTTCTGACGCCGGAAAAAGGATTGAGAAATGAAACATCCAAAGCAAAGGACTCAGCGGAAGCGTCTAAAATTGCCGGAAAATTGAAGGCAAAGGGCAACAGTAGCAGCGGTAACAAAACATCTTCGATGACGGACGTTTATTTACGGAACCAAGCGGCAAAGGAAATGGATAAGAATAGGCGCAAATCATATTTACCATACCGGCGAGATCTGGTAGGTTTTTTCGCTAGTGCCAGCAATATTGGTAGAACTTTTCCTCCTTTTTAACAACCTTCCATTTTTTAATCAAGTGTTTGTAAATATCTAAATGAAAGAACATGTGCGATGATTCCTGAATGATTTAGTTGTTATGCTCCCATTTGTTTAAAGGATGATCATCCACCTCGATAATAATTTTCGATGAATTTTTCATATTATCTATGAATTAAATTTGATAATTTTTA</genome_strand>
        <mrna_strand>TCAGTTCAAGTTTCGTTAAAGGATTTATTCTTAGAAGAACGGGAACCGCTGTCGTCGTCATCTTCCGAGGTCGATGAGTTGGAGAGTGTACCTCCGGGAACGTATTGTGTATGGAAGCCGAATATAACCGAGCCTTCACCAAGCAGATGTAAGAAGAGTAATTCAACGGGATCGGCGTTTAAGCGGTGGAATATCCGAGATTTGATGCGCCGGAGCAACAGTGACGGTAAGGACAGTTTTTTATTTCTGACGCCGGAAAAAGGATTGAGAAATGAAACATCCAAAGCAAAGGACTCAGCGGAAGCGTCTAAAATTGCCGGAAAATTGAAGGCAAAGGGCAACAGTAGCAGCGGTAACAAAACATCTTCGATGACGGACGTTTATTTACGGAACCAAGCGGCAAAGGAAATGGATAAGAATAGGCGCAAATCATATTTACCATACCGGCGAGATCTGGTAGGTTTTTTCGCTAGTGCCAGCAATATTGGTAGAACTTTTCCTCCTTTTTAACAACCTTCCATTTTTTAATCAAGTGTTTGTAAATATCTAAATGAAAGAACATGTGCGATGATTCCTGAATGATTTAGTTGTTATGCTCCCATTTGTTTAAAGGATGATCATCCACCTCGATAATAATTTTCGATGAA-TTTTCATATTATCTATGAATTAAATTTGATAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355115" ref_strand="+" ref_description="SGN-E355115 [cTOS-18-B16]">
      <seq>tcagttcaagtttcgttaaaggatttattcttagaagaacgggaaccgctgtcgtcgtcatcttccgaggtcgatgagttggagagtgtacctccgggaacgtattgtgtatggaagccgaatataaccgagccttcaccaagcagatgtaagaagagtaattcaacgggatcggcgtttaagcggtggaatatccgagatttgatgcgccggagcaacagtgacggtaaggacagttttttatttctgacgccggaaaaaggattgagaaatgaaacatccaaagcaaaggactcagcggaagcgtctaaaattgccggaaaattgaaggcaaagggcaacagtagcagcggtaacaaaacatcttcgatgacggacgtttatttacggaaccaagcggcaaaggaaatggataagaataggcgcaaatcatatttaccataccggcgagatctggtaggttttttcgctagtgccagcaatattggtagaacttttcctcctttttaacaaccttccattttttaatcaagtgtttgtaaatatctaaatgaaagaacatgtgcgatgattcctgaatgatttagttgttatgctcccatttgtttaaaggatgatcatccacctcgataataattttcgatgaatttttcatattatctatgaattaaatttgataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="36408" stop="35129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36108" g_stop="35428" g_length="681"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="681" r_length="681" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E355115" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36108" e_stop="35428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTTCAAGTTTCGTTAAAGGATTTATTCTTAGAAGAACGGGAACCGCTGTCGTCGTCATCTTCCGAGGTCGATGAGTTGGAGAGTGTACCTCCGGGAACGTATTGTGTATGGAAGCCGAATATAACCGAGCCTTCACCAAGCAGATGTAAGAAGAGTAATTCAACGGGATCGGCGTTTAAGCGGTGGAATATCCGAGATTTGATGCGCCGGAGCAACAGTGACGGTAAGGACAGTTTTTTATTTCTGACGCCGGAAAAAGGATTGAGAAATGAAACATCCAAAGCAAAGGACTCAGCGGAAGCGTCTAAAATTGCCGGAAAATTGAAGGCAAAGGGCAACAGTAGCAGCGGTAACAAAACATCTTCGATGACGGACGTTTATTTACGGAACCAAGCGGCAAAGGAAATGGATAAGAATAGGCGCAAATCATATTTACCATACCGGCGAGATCTGGTAGGTTTTTTCGCTAGTGCCAGCAATATTGGTAGAACTTTTCCTCCTTTTTAACAACCTTCCATTTTTTAATCAAGTGTTTGTAAATATCTAAATGAAAGAACATGTGCGATGATTCCTGAATGATTTAGTTGTTATGCTCCCATTTGTTTAAAGGATGATCATCCACCTCGATAATAATTTTCGATGAATTTTTCATATTATCTATGAATTAAATTTGATAAT</genome_strand>
        <mrna_strand>TCAGTTCAAGTTTCGTTAAAGGATTTATTCTTAGAAGAACGGGAACCGCTGTCGTCGTCATCTTCCGAGGTCGATGAGTTGGAGAGTGTACCTCCGGGAACGTATTGTGTATGGAAGCCGAATATAACCGAGCCTTCACCAAGCAGATGTAAGAAGAGTAATTCAACGGGATCGGCGTTTAAGCGGTGGAATATCCGAGATTTGATGCGCCGGAGCAACAGTGACGGTAAGGACAGTTTTTTATTTCTGACGCCGGAAAAAGGATTGAGAAATGAAACATCCAAAGCAAAGGACTCAGCGGAAGCGTCTAAAATTGCCGGAAAATTGAAGGCAAAGGGCAACAGTAGCAGCGGTAACAAAACATCTTCGATGACGGACGTTTATTTACGGAACCAAGCGGCAAAGGAAATGGATAAGAATAGGCGCAAATCATATTTACCATACCGGCGAGATCTGGTAGGTTTTTTCGCTAGTGCCAGCAATATTGGTAGAACTTTTCCTCCTTTTTAACAACCTTCCATTTTTTAATCAAGTGTTTGTAAATATCTAAATGAAAGAACATGTGCGATGATTCCTGAATGATTTAGTTGTTATGCTCCCATTTGTTTAAAGGATGATCATCCACCTCGATAATAATTTTCGATGAATTTTTCATATTATCTATGAATTAAATTTGATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E354769" ref_strand="+" ref_description="SGN-E354769 [cTOS-19-I7]">
      <seq>agatgtaagaagagtaattcaacgggatcggcgtttaagcggtggaatatccgagatttgatgcgccggagcaacagtgacggtaaggacagttttttatttctgacgccggaaaaaggattgagaaatgaaacatccaaagcaaaggactcagcggaagcgtctaaaattgccggaaaattgaaggcaaagggcaacagtagcagcggtaacaaaacatcttcgatgacggacgtttatttacggaaccaagcggcaaaggaaatggataagaataggcgcaaatcatatttaccataccggcgagatctggtagggtttttcgctagtgccagcaatattggtagaacttttcctcctttttaacaaccttccattttttaatcaagtgtttgtaaatatctaaatgaaagaacatgtgcgatgattcctgaatgatttagttgttatgctcccatttgtttaaaggatgatcatccacctcgataataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="36264" stop="35173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35964" g_stop="35463" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E354769" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35964" e_stop="35463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGTAAGAAGAGTAATTCAACGGGATCGGCGTTTAAGCGGTGGAATATCCGAGATTTGATGCGCCGGAGCAACAGTGACGGTAAGGACAGTTTTTTATTTCTGACGCCGGAAAAAGGATTGAGAAATGAAACATCCAAAGCAAAGGACTCAGCGGAAGCGTCTAAAATTGCCGGAAAATTGAAGGCAAAGGGCAACAGTAGCAGCGGTAACAAAACATCTTCGATGACGGACGTTTATTTACGGAACCAAGCGGCAAAGGAAATGGATAAGAATAGGCGCAAATCATATTTACCATACCGGCGAGATCTGGTAGGTTTTTTCGCTAGTGCCAGCAATATTGGTAGAACTTTTCCTCCTTTTTAACAACCTTCCATTTTTTAATCAAGTGTTTGTAAATATCTAAATGAAAGAACATGTGCGATGATTCCTGAATGATTTAGTTGTTATGCTCCCATTTGTTTAAAGGATGATCATCCACCTCGATAATAATTTTCGATGA</genome_strand>
        <mrna_strand>AGATGTAAGAAGAGTAATTCAACGGGATCGGCGTTTAAGCGGTGGAATATCCGAGATTTGATGCGCCGGAGCAACAGTGACGGTAAGGACAGTTTTTTATTTCTGACGCCGGAAAAAGGATTGAGAAATGAAACATCCAAAGCAAAGGACTCAGCGGAAGCGTCTAAAATTGCCGGAAAATTGAAGGCAAAGGGCAACAGTAGCAGCGGTAACAAAACATCTTCGATGACGGACGTTTATTTACGGAACCAAGCGGCAAAGGAAATGGATAAGAATAGGCGCAAATCATATTTACCATACCGGCGAGATCTGGTAGGGTTTTTCGCTAGTGCCAGCAATATTGGTAGAACTTTTCCTCCTTTTTAACAACCTTCCATTTTTTAATCAAGTGTTTGTAAATATCTAAATGAAAGAACATGTGCGATGATTCCTGAATGATTTAGTTGTTATGCTCCCATTTGTTTAAAGGATGATCATCCACCTCGATAATAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E420647" ref_strand="+" ref_description="SGN-E420647 [STM-31-F19]">
      <seq>ttatgaaattacaactactccatgcaggaagaagaatatttttctcctagctttagcagctactcgtcaaatagagtggctgagattgccggaaaaatctccgatgaaattaaatgtgattctgagttgatagaagagaacgttgacggtgctgaaggagatgaagattttgaattctctttggtatgtgaaaatccagaggattcggtcggtgtattccccttcgaccgtcaaatccagcctatttaccccgttttcaaccgcgatctgttactaaacgacgtttcttatgacgtagatcgcgaaggtgttaacggtgaatcgtcggaaaacgtcaatagttcagttcaagtttcgttaaaggatttattcttagaagaacgggaaccgctgtcgtcatcatcttccgaggtcgatgagttggagagtgtacctccgggaacgtattgtgtatggaagccgaatatagccgagccttcaccgagcagatgtaagaagagtaattcaacgggatcggcgtttaagcggtggaatattcgagatttgatgcgccggagcaacagtgacggtaaggacagttttgtatttctgacaccggaaaaaggattgaaaagcgaaacgtccaaagcaaaggactcagcagaggcgtctaaagttgccggaaaattgaaggcaaaggggcacagtagcagcggtaacaaggcatcttcgatgacggacgtttatttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="36742" stop="35421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36442" g_stop="35721" g_length="722"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="730" r_length="730" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E420647" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E420647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36442" e_stop="35721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGAAATTACAACTACTCACATGCAGGAAGACGAATTTTTTTCTCCGAGCTTTAGTAGCTACTCTTCAAATAGAGTGGCCGAGATTGCCGGAAAAATCTCCGATGAAATTAAGCGTGATTCTCAGGTGGTAGAAGAGAACGTTGACGGTGCCGATGGAGATGAAGATTTTGAATTCTCTTTGGTTTGTGAAAATCCAGAGGATTCGGTCGGCGTATTCCCCTTCGACCG-----T----CCTATTTACCCCGTTTTCAACCGCGATCTGATACCAAACGATGTTTCTTATGGCGTAGATCGAGAAGGTGTTAACGGTGAATCGTCGGAAAACGTCAATAGTTCAGTTCAAGTTTCGTTAAAGGATTTATTCTTAGAAGAACGGGAACCGCTGTCGTCGTCATCTTCCGAGGTCGATGAGTTGGAGAGTGTACCTCCGGGAACGTATTGTGTATGGAAGCCGAATATAACCGAGCCTTCACCAAGCAGATGTAAGAAGAGTAATTCAACGGGATCGGCGTTTAAGCGGTGGAATATCCGAGATTTGATGCGCCGGAGCAACAGTGACGGTAAGGACAGTTTTTTATTTCTGACGCCGGAAAAAGGATTGAGAAATGAAACATCCAAAGCAAAGGACTCAGCGGAAGCGTCTAAAATTGCCGGAAAATTGAAGGCAAAGGGCAACAGTAGCAGCGGTAACAAAACATCTTCGATGACGGACGTTTATTTAC</genome_strand>
        <mrna_strand>TTATGAAATTACAACTACTC-CATGCAGGAAGAAGAATATTTTTCTCCTAGCTTTAGCAGCTACTCGTCAAATAGAGTGGCTGAGATTGCCGGAAAAATCTCCGATGAAATTAAATGTGATTCTGAGTTGATAGAAGAGAACGTTGACGGTGCTGAAGGAGATGAAGATTTTGAATTCTCTTTGGTATGTGAAAATCCAGAGGATTCGGTCGGTGTATTCCCCTTCGACCGTCAAATCCAGCCTATTTACCCCGTTTTCAACCGCGATCTGTTACTAAACGACGTTTCTTATGACGTAGATCGCGAAGGTGTTAACGGTGAATCGTCGGAAAACGTCAATAGTTCAGTTCAAGTTTCGTTAAAGGATTTATTCTTAGAAGAACGGGAACCGCTGTCGTCATCATCTTCCGAGGTCGATGAGTTGGAGAGTGTACCTCCGGGAACGTATTGTGTATGGAAGCCGAATATAGCCGAGCCTTCACCGAGCAGATGTAAGAAGAGTAATTCAACGGGATCGGCGTTTAAGCGGTGGAATATTCGAGATTTGATGCGCCGGAGCAACAGTGACGGTAAGGACAGTTTTGTATTTCTGACACCGGAAAAAGGATTGAAAAGCGAAACGTCCAAAGCAAAGGACTCAGCAGAGGCGTCTAAAGTTGCCGGAAAATTGAAGGCAAAGGGGCACAGTAGCAGCGGTAACAAGGCATCTTCGATGACGGACGTTTATTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E406566" ref_strand="+" ref_description="SGN-E406566 [PPI-4-A2]">
      <seq>ttatgaaattacaactactccatgcaggaagaagaatatttttctcctagctttagcagctactcgtcaaatagagtggctgagattgccggaaaaatctccgatgaaattaaatgtgattctgagttgatagaagagaacgttgacggtgctgaaggagatgaagattttgaattctctttggtatgtgaaaatccagaggattcggtcggtgtattccccttcgaccgtcaaatccagcctatttaccccgttttcaaccgcgatctgttactaaacgacgtttcttatgacgtagatcgcgaaggtgttaacggtgaatcgtcggaaaacgtcaatagttcagttcaagtttcgttaaaggatttattcttagaagaacgggaaccgctgtcgtcatcatcttccgaggtcgatgagttggagagtgtacctccgggaacgtattgtgtatggaagccgaatatagccgagccttcaccgagcagatgtaagaagagtaattcaacgggatcggcgtttaagcggtggaatattcgagatttgatgcgccggagcaacagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="36742" stop="35587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36442" g_stop="35887" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="564" r_length="564" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E406566" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E406566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36442" e_stop="35887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGAAATTACAACTACTCACATGCAGGAAGACGAATTTTTTTCTCCGAGCTTTAGTAGCTACTCTTCAAATAGAGTGGCCGAGATTGCCGGAAAAATCTCCGATGAAATTAAGCGTGATTCTCAGGTGGTAGAAGAGAACGTTGACGGTGCCGATGGAGATGAAGATTTTGAATTCTCTTTGGTTTGTGAAAATCCAGAGGATTCGGTCGGCGTATTCCCCTTCGACCG-----T----CCTATTTACCCCGTTTTCAACCGCGATCTGATACCAAACGATGTTTCTTATGGCGTAGATCGAGAAGGTGTTAACGGTGAATCGTCGGAAAACGTCAATAGTTCAGTTCAAGTTTCGTTAAAGGATTTATTCTTAGAAGAACGGGAACCGCTGTCGTCGTCATCTTCCGAGGTCGATGAGTTGGAGAGTGTACCTCCGGGAACGTATTGTGTATGGAAGCCGAATATAACCGAGCCTTCACCAAGCAGATGTAAGAAGAGTAATTCAACGGGATCGGCGTTTAAGCGGTGGAATATCCGAGATTTGATGCGCCGGAGCAACAGT</genome_strand>
        <mrna_strand>TTATGAAATTACAACTACTC-CATGCAGGAAGAAGAATATTTTTCTCCTAGCTTTAGCAGCTACTCGTCAAATAGAGTGGCTGAGATTGCCGGAAAAATCTCCGATGAAATTAAATGTGATTCTGAGTTGATAGAAGAGAACGTTGACGGTGCTGAAGGAGATGAAGATTTTGAATTCTCTTTGGTATGTGAAAATCCAGAGGATTCGGTCGGTGTATTCCCCTTCGACCGTCAAATCCAGCCTATTTACCCCGTTTTCAACCGCGATCTGTTACTAAACGACGTTTCTTATGACGTAGATCGCGAAGGTGTTAACGGTGAATCGTCGGAAAACGTCAATAGTTCAGTTCAAGTTTCGTTAAAGGATTTATTCTTAGAAGAACGGGAACCGCTGTCGTCATCATCTTCCGAGGTCGATGAGTTGGAGAGTGTACCTCCGGGAACGTATTGTGTATGGAAGCCGAATATAGCCGAGCCTTCACCGAGCAGATGTAAGAAGAGTAATTCAACGGGATCGGCGTTTAAGCGGTGGAATATTCGAGATTTGATGCGCCGGAGCAACAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E425597" ref_strand="+" ref_description="SGN-E425597 [STM-45-E20]">
      <seq>caaatccaaaatgagcttaatcaaatcctttttttccagggatgttttaagaatgttacaatgataataaatttcacctcaaaatgttagtttctactttcctagccccattcactcattattgttaaatatgtctactttacacaacttaattaactttacaaattgaacagtcatttatgtaatgtgacaaactacaaactattcttgaagatgtactttttgtttgcctctatcactggactcctcagcaaagtcactgtttaaactttcgaatcgattcctttgaatctgatcatgatacataggatggaactctgtttgaaatgccctgtgcgtaacgtatggtaacaaagtggcaacgacaaccacaagtgtgacaagccaatagaaaggactcggagcacaagcttccacaagaattttgtacgcggttgtagatattataggcgaaagagagccataaacaactaaaaacacgtaccaaatggcaatgctaccccaaataaagaagtgctgaatccaagtgaagtagttgatagagattgccatttgacaattgactgtccacaccacacacgtgtacatcatcactccgaggactccgtagtcaactggttgaccatctttccggaatacttgatgcgcgagtgaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="+" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="39185" stop="40394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39463" g_stop="40094" g_length="632"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="658" r_length="642" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="+" ref_id="SGN-E425597" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E425597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39463" e_stop="40094"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAATCAAATCCTTTACCAAAAGGGATGTTTTTAGAATGTTACAATGATAATAAATTCCACCTCAAAATGTTAGTTTCTACTTTCCTAGCCCTATTCACTCAGTATTGTT--ATATATCTACTTTACACAACTTGATTAACTTTACAAATTAAACAGTCAATTA--TAAACT-ACAAACT--AAA-TA---TTAAAGATCTATCTTTTGTTTGCCTCTGTCACTGGACTCCTCAGAAAAGTCACTGTTTAAACTTTCGAATTGTTTCCTTTGAATCTGATCATGGTACATAGGATGGAACTGTGTTTGAAATGCCCTGTACGTAACGTATGGTAACAAAGTGGCAACGACAACCAGGAGTGTGACAAGCCAAAAGAAAGGACTCGGAGCACAAGCTTCCACAAGAATTTTGTACGCGGTTGTAGATATTATAGGCGAAAGAGAGCCATAAACAACTAAAAACACGTACCAAATGGCAATGCTGCCCCAAATGAAGAAGTGCTGAATCCAAGTGAAGTAGTTGATAGAGATTGCCATTTGACAATTGACTGTCCACACCACACACGTGTACATCATCACCCCGAGGACTCCGTAGTCAACTGGTTGACCATCTTTTCGGAATACTTGATGCACGAGTGAATTG</genome_strand>
        <mrna_strand>TT-AATCAAATCCTTTTTTTCCAGGGATGTTTTAAGAATGTTACAATGATAATAAATTTCACCTCAAAATGTTAGTTTCTACTTTCCTAGCCCCATTCACTCATTATTGTTAAATATGTCTACTTTACACAACTTAATTAACTTTACAAATTGAACAGTCATTTATGTAATGTGACAAACTACAAACTATTCTTGAAGATGTACTTTTTGTTTGCCTCTATCACTGGACTCCTCAGCAAAGTCACTGTTTAAACTTTCGAATCGATTCCTTTGAATCTGATCATGATACATAGGATGGAACTCTGTTTGAAATGCCCTGTGCGTAACGTATGGTAACAAAGTGGCAACGACAACCACAAGTGTGACAAGCCAATAGAAAGGACTCGGAGCACAAGCTTCCACAAGAATTTTGTACGCGGTTGTAGATATTATAGGCGAAAGAGAGCCATAAACAACTAAAAACACGTACCAAATGGCAATGCTACCCCAAATAAAGAAGTGCTGAATCCAAGTGAAGTAGTTGATAGAGATTGCCATTTGACAATTGACTGTCCACACCACACACGTGTACATCATCACTCCGAGGACTCCGTAGTCAACTGGTTGACCATCTTTCCGGAATACTTGATGCGCGAGTGAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E565350" ref_strand="+" ref_description="SGN-E565350 [3791]">
      <seq>gtcatttgctcttgacaaaaaacttgaaaaatcattcttggagcttgcaataaattgtgcatctgttatttgctgccggtccactcctaaacaaaaagctcttatatgcaggttaccagactggtgaaagttgaaacacaccgaattacattagcaattggggatggggcaaatgatgtaagcatgctgcaagaggctgatgttggggttggcatcagtggtgttgaaggaatgcaggctgtcatgtcaagtgattatgcaatagctcaattccgttttcttgagcgcttgttattggtccatggccactggtgctacaggagaatatcgatgatgctatgctacttcttttacaagaacatcgccttcgggttgacccttttctggttcgagggctttgcttctttctctggccgacctgcttatcctgactggtatatgtcattcatatcctgtgttcttcacatcgcttcctgtgatttgctcctcggtgtccttgatcagggatgtttctgccaactatgtctcgagtttcctaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="43329" stop="40519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43029" g_stop="42927" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42926" i_stop="42809" i_length="118">
            <donor d_prob="0.407" d_score="0.98"/>
            <acceptor a_prob="0.689" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42808" g_stop="42675" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="237" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42674" i_stop="41436" i_length="1239">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.868" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41435" g_stop="41337" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="336" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41336" i_stop="41013" i_length="324">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41012" g_stop="40821" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="531" r_length="195" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E565350" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E565350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43029" e_stop="42927"/>
          <exon e_start="42808" e_stop="42675"/>
          <exon e_start="41435" e_stop="41337"/>
          <exon e_start="41012" e_stop="40821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATTTGCTCTTGACAAAAAACTAGAAAAATCGTTCTTGGAGCTTGCAATAAATTGTGCATCTGTTATTTGCTGCCGCTCCACTCCTAAACAAAAAGCTCTTGTGGGTGCTCTCCCTTACAGTTTTATATTTAGAGAAATTTTTTCTTGAGCTGTGTACAAAGTTTGTTCAATATTTTGTTTTGTTGGCCATTTGAATAATCTGACAGAAATATTTGAAGATATGCAGGTTACCAGACTGGTGAAAGTTGAAACACACCGAACTACATTAGCAATTGGGGATGGGGCAAATGATGTAAGCATGCTACAAGAGGCTGATGTTGGGGTTGGCATCAGTGGTGTTGAAGGAATGCAGGTTAAATATTTTTGTCTAGTTCTTCCTCTTTTGTATTATCCTTTTTCCTTCCTCCATTTCTCAGCATTTGGACCCTTCCCTTCCCTTTTCTTCGTTGTCCCACTTCACTTTACCTTTTCCTCGTTAGGGGTGGATATCTTTCCTCAAGTGGGGGTTTGGGTGAGAAATTAGGTAGTACCTTTGGCTGTCCTGTTTTTTCTGTACATATTACCATATCTATTCTCCCTCGATTGCGAGCACGTGTAATTTTGATATCTTTTATAAGGTCAGTTGGAGGCCTAAAAAGCTACTGAAAATGAGGATATAACTACATCATGCAACTGTAATATATTTTTCAGGGAAAAAACATGCAGTGTAAGACCCACCGGCACATGACTGTTTGATTATATAATGTAGTTTTTTTGGCACTCTACTCTTTCTATTGTATTATTTTTTCTGCATGAATTAACTTTCTGAGCAGAAACAAACTCTCTGTCTAATGAACTTGATGATAATTGTGTCTTCTACTTGGTGTGTTGCATGTCCACAAATTTCAAGTTCTTAATGTAAGAATTCTGCTAGCCCAGTAGCTGCTTATGATTGGTCTGCATTATGGATAGTCCGACTTTACAAATTGTAGCAAGCTTGAATTTAGTACGTTTTTATTCATCATTAATCATTGTTCTGGAGGATTAGGAATTTATAATCAAGGAGTCGAGACTTAATGAAGAACAGAAGTAACGTGCAGTACTTTAGTATATATTAGCTCTTTTGTGTGAGACACTTTTCCTCTGGAGCGCCTTATAACTGTTTCGTGTTCAGATTTGATGAATGGTTTCTCAGTTAACTTCTCTATATTTTTAGATTAACATTTTATTTTCTAACTTCCCATGTAAAACTTTTTATGCTTCTATATAGATGTGAATTGCATTAGCATGACAAACTGTCATTGCCCAAAGATGTATTGGCGTCGTTTCTCATTTCAACATTCTGCCATTGATATGGATTTTTGATTTAGCAGGAGCTGTAACATTGTTTTCCTCTTTCATTTGCTGCTGTTTTTTTGGGCATAAATATTATCTACGAAGTCGGTCAATGCTTAGAGTCATAAGCTTTTTCCAGAAGACATTCTGTTTTCTTGTCTCTCTTGATAGACAGTGATTTCTAATTGTGTAGTAGGCAATATGAGCACATATGCTTCTGCCTAACAATGCCAATGTTTTAGAGGAGTTAAACTGATGATTCTGCAAATCTTATTAGGCTGTCATGTCAAGTGATTATGCAATAGCTCAATTCCGTTTTCTTGAGCGCTTGTTATTGGTCCATGGCCACTGGTGCTACAGGAGAATATCGATGATGGTAAGTATTCAATATCTCTTCTTGGTGAAATAAAAATAAAATTGGATATGACCAGAAACCACATCAGGCATTTCGTTCATCTTGAATTGTACCCTTTTTTTAAACCTTATTTGTAAAAACTGAATTGATGTAATTAACATTTGCAGGATTGAGTTGAATATTTTTATTTAAACAGGCGTGCAAACATAATTATTTTAGCAGGCTTACAGTTTTCTTAAACCATTAAGAAGTATGACACATTATAAAGTGAATAGCCAGTTTCATGTTTGGTTTTGAATTAGAGACATTTATGATCTTCTTAATATCACCTCGGCATGGTTGCAGCTATGCTACTTCTTTTACAAGAACATCGCCTTCGGGTTGACCCTTTTCTGGTTCGAGGGCTTTGCTTCTTTCTCTGGCCGACCTGCTTATAATGACTGGTATATGTCATT-ATATAATGTGTTCTTCACATCGCTTCCTGTGA-TTGCT-CTCGGTGTCTTTGATCA-GGATGTTTCTGCCCGCCTATGTCTCGAG</genome_strand>
        <mrna_strand>GTCATTTGCTCTTGACAAAAAACTTGAAAAATCATTCTTGGAGCTTGCAATAAATTGTGCATCTGTTATTTGCTGCCGGTCCACTCCTAAACAAAAAGCTCTT......................................................................................................................ATATGCAGGTTACCAGACTGGTGAAAGTTGAAACACACCGAATTACATTAGCAATTGGGGATGGGGCAAATGATGTAAGCATGCTGCAAGAGGCTGATGTTGGGGTTGGCATCAGTGGTGTTGAAGGAATGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTCATGTCAAGTGATTATGCAATAGCTCAATTCCGTTTTCTTGAGCGCTTGTTATTGGTCCATGGCCACTGGTGCTACAGGAGAATATCGATGATG....................................................................................................................................................................................................................................................................................................................................CTATGCTACTTCTTTTACAAGAACATCGCCTTCGGGTTGACCCTTTTCTGGTTCGAGGGCTTTGCTTCTTTCTCTGGCCGACCTGCTTATCCTGACTGGTATATGTCATTCATATCCTGTGTTCTTCACATCGCTTCCTGTGATTTGCTCCTCGGTGTCCTTGATCAGGGATGTTTCTG-CCAACTATGTCTCGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E425596" ref_strand="+" ref_description="SGN-E425596 [STM-45-E20]">
      <seq>ggcaagatggttgacagatcatatcagctccttcatgtcttagagttcagtagttcgcggaagagaatgtctgtaattgtaaaaaatgctgagaaccagttgttgctcctcagcaaaggtgcagacagtgtgatgttcgaacagctttcaaaagatgggcgggtctttgagggtataacaagggaacatcttaaacaatatgctgaagcaggattgcgaactcttgttgtagcttaccgtgagcttgatgagaaagagttccaatcatgggaacaagagtttttgaatgcccaagcttctgtaacagcagatagagatgctttggtggatgctgctgctcagaagattgaacgggacataattctccttggtgttactgctgttgaggacaaacttcaaaaaggggtccctgaatgcattgataaacttgcaaaagctggaattaagatttgggtcttaactggtgataagatggaaacagctatcaatattgggtatgcttgtagtttattaagaccagatatgaggcaaatcataattactttagattctcaagacatattggacttggaaaaccaaggaaacaaggagactatagcaaaggcttcacatgatagcattacaaagcaaatacgggagggaatgttacaagtaagctcaagcagaggaactactgcatcatttggtttggtcattgatggcaaatcattgtcatttgctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="44436" stop="42717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44133" g_stop="44023" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="128" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44022" i_stop="43893" i_length="130">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.847" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43892" g_stop="43616" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="405" r_length="277" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43615" i_stop="43504" i_length="112">
            <donor d_prob="0.936" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43503" g_stop="43415" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="494" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43414" i_stop="43333" i_length="82">
            <donor d_prob="0.529" d_score="0.98"/>
            <acceptor a_prob="0.544" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43332" g_stop="43224" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="603" r_length="109" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43223" i_stop="43137" i_length="87">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43136" g_stop="43017" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="723" r_length="120" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E425596" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E425596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44133" e_stop="44023"/>
          <exon e_start="43892" e_stop="43616"/>
          <exon e_start="43503" e_stop="43415"/>
          <exon e_start="43332" e_stop="43224"/>
          <exon e_start="43136" e_stop="43017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATATCAGCTCCTTCATGTCTTAGAGTTCAGTAGTTCGCGGAAGCGAATGTCTGTAATTGTAAAAAATGCTGAGAACCAGTTGTTGCTCCTCAGCAAAGGTGCAGACAGGTCTGTATCTCCGTGCACTGCCCTTGCATGTGTCTAGTTTTTCTTATCAAGTGATCAATATGATTCAAATCCTCTGATTCTGTTTAATTTAGACTGATATCTTTTTGCTCGTAATATTTCCTTTTGTTAGTGTGATGTTCGAACAACTTTCAAAAGATGGGCGTGTCTTTGAGGGTATAACAAGGGAACATCTTAAACAATATGCTGAAGCAGGATTGCGAACTCTTGTCGTAGCTTACCGTGAGCTTGATGAGAAAGAGTTCCAATCATGGGAACAAGAGTTTTTGAATGCCCAAGCTTCTGTAACAGCAGATAGAGATGCTTTGGTGGATGTTGCTGCTCAGAAGATTGAACGGGACTTAATTCTCCTTGGTGTCACTGCTGTTGAGGACAAACTTCAAAAAGGGGTGAGCTTTAATCTTATGTTGCACATTGGTTGCAATTCAGAGTAGCTTGCAATCTCCTTTTTTTGCTTTGCGTTGTTTATGACTTGCTCCAATTCCAAACTGATTGCTGCAGGTCCCTGAATGCATTGATAAGCTTGCAAAAGCTGGAATTAAGATTTGGGTCTTAACTGGTGATAAGATGGAAACGGCTATCAATATTGGGTAGGGTTTACTAGTAAAATCATGCAACTTCTATAATCAAACGGTGAATGGAGTTCTCATCATCTTTCTGAATGTCCTGTAGGTATGCTTGTAGTTTATTAAGACCAGATATGAGGCAAATCATAATTACTTTAGATTCTCAAGACATATTGGACTTGGAAAACCGAGGAAACAAGGAGACTATAGCAAAGGTACAGGATTTTTGATTTGTTTTGCCTACAAAAACACAAATGTTTTTTTTTTAATTTTATGTTTTTCACCAAGTTCAACTGTCGTAGGCTTCACATGATAGCATTACAAAGCAAATACGGGAGGGAATGTCACAAGTAAGCTCAAGCAGAGGAACTACTGCATCATTTGGTTTGATCATTGATGGCAAATCATTGTCATTTGCTCTT</genome_strand>
        <mrna_strand>ATCATATCAGCTCCTTCATGTCTTAGAGTTCAGTAGTTCGCGGAAGAGAATGTCTGTAATTGTAAAAAATGCTGAGAACCAGTTGTTGCTCCTCAGCAAAGGTGCAGACAG..................................................................................................................................TGTGATGTTCGAACAGCTTTCAAAAGATGGGCGGGTCTTTGAGGGTATAACAAGGGAACATCTTAAACAATATGCTGAAGCAGGATTGCGAACTCTTGTTGTAGCTTACCGTGAGCTTGATGAGAAAGAGTTCCAATCATGGGAACAAGAGTTTTTGAATGCCCAAGCTTCTGTAACAGCAGATAGAGATGCTTTGGTGGATGCTGCTGCTCAGAAGATTGAACGGGACATAATTCTCCTTGGTGTTACTGCTGTTGAGGACAAACTTCAAAAAGGG................................................................................................................GTCCCTGAATGCATTGATAAACTTGCAAAAGCTGGAATTAAGATTTGGGTCTTAACTGGTGATAAGATGGAAACAGCTATCAATATTGG..................................................................................GTATGCTTGTAGTTTATTAAGACCAGATATGAGGCAAATCATAATTACTTTAGATTCTCAAGACATATTGGACTTGGAAAACCAAGGAAACAAGGAGACTATAGCAAAG.......................................................................................GCTTCACATGATAGCATTACAAAGCAAATACGGGAGGGAATGTTACAAGTAAGCTCAAGCAGAGGAACTACTGCATCATTTGGTTTGGTCATTGATGGCAAATCATTGTCATTTGCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E454982" ref_strand="+" ref_description="SGN-E454982 [cSTS-24-P22]">
      <seq>ggcaagatggttgacagatcatatcagctccttcatgtcttagagttcagtagttcgcggaagagaatgtctgtaattgtaaaaaatgctgagaaccagttgttgctcctcagcaaaggtgcagacagtgtgatgttcgaacagctttcaaaagatgggcgggtctttgagggtataacaagggaacatcttaaacaatatgctgaagcaggattgcgaactcttgttgtagcttaccgtgagcttgatgagaaagagttccaatcatgggaacaagagtttttgaatgcccaagcttctgtaacagcagatagagatgctttggtggatgctgctgctcagaagattgaacgggacataattctccttggtgttactgctgttgaggacaaacttcaaaaaggggtccctgaatgcattgataaacttgcaaaagctggaattaagatttgggtcttaactggtgataagatggaaacagctatcaatattgggtatgcttgtagtttattaagaccagatatgaggcaaatcataattactttagattctcaagacatattggacttggaaaaccaaggaaacaaggagactatagcaaaggcttcacatgatagcattacaaagcaaatacgggagggaatgttacaagtaagctcaagcagaggaactactgcatcatttggtttggtcattgatggcaaatcattgtcatttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="44436" stop="42721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44133" g_stop="44023" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="128" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44022" i_stop="43893" i_length="130">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.847" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43892" g_stop="43616" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="405" r_length="277" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43615" i_stop="43504" i_length="112">
            <donor d_prob="0.936" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43503" g_stop="43415" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="494" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43414" i_stop="43333" i_length="82">
            <donor d_prob="0.529" d_score="0.98"/>
            <acceptor a_prob="0.544" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43332" g_stop="43224" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="603" r_length="109" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43223" i_stop="43137" i_length="87">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43136" g_stop="43021" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="719" r_length="116" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E454982" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E454982" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44133" e_stop="44023"/>
          <exon e_start="43892" e_stop="43616"/>
          <exon e_start="43503" e_stop="43415"/>
          <exon e_start="43332" e_stop="43224"/>
          <exon e_start="43136" e_stop="43021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATATCAGCTCCTTCATGTCTTAGAGTTCAGTAGTTCGCGGAAGCGAATGTCTGTAATTGTAAAAAATGCTGAGAACCAGTTGTTGCTCCTCAGCAAAGGTGCAGACAGGTCTGTATCTCCGTGCACTGCCCTTGCATGTGTCTAGTTTTTCTTATCAAGTGATCAATATGATTCAAATCCTCTGATTCTGTTTAATTTAGACTGATATCTTTTTGCTCGTAATATTTCCTTTTGTTAGTGTGATGTTCGAACAACTTTCAAAAGATGGGCGTGTCTTTGAGGGTATAACAAGGGAACATCTTAAACAATATGCTGAAGCAGGATTGCGAACTCTTGTCGTAGCTTACCGTGAGCTTGATGAGAAAGAGTTCCAATCATGGGAACAAGAGTTTTTGAATGCCCAAGCTTCTGTAACAGCAGATAGAGATGCTTTGGTGGATGTTGCTGCTCAGAAGATTGAACGGGACTTAATTCTCCTTGGTGTCACTGCTGTTGAGGACAAACTTCAAAAAGGGGTGAGCTTTAATCTTATGTTGCACATTGGTTGCAATTCAGAGTAGCTTGCAATCTCCTTTTTTTGCTTTGCGTTGTTTATGACTTGCTCCAATTCCAAACTGATTGCTGCAGGTCCCTGAATGCATTGATAAGCTTGCAAAAGCTGGAATTAAGATTTGGGTCTTAACTGGTGATAAGATGGAAACGGCTATCAATATTGGGTAGGGTTTACTAGTAAAATCATGCAACTTCTATAATCAAACGGTGAATGGAGTTCTCATCATCTTTCTGAATGTCCTGTAGGTATGCTTGTAGTTTATTAAGACCAGATATGAGGCAAATCATAATTACTTTAGATTCTCAAGACATATTGGACTTGGAAAACCGAGGAAACAAGGAGACTATAGCAAAGGTACAGGATTTTTGATTTGTTTTGCCTACAAAAACACAAATGTTTTTTTTTTAATTTTATGTTTTTCACCAAGTTCAACTGTCGTAGGCTTCACATGATAGCATTACAAAGCAAATACGGGAGGGAATGTCACAAGTAAGCTCAAGCAGAGGAACTACTGCATCATTTGGTTTGATCATTGATGGCAAATCATTGTCATTTGC</genome_strand>
        <mrna_strand>ATCATATCAGCTCCTTCATGTCTTAGAGTTCAGTAGTTCGCGGAAGAGAATGTCTGTAATTGTAAAAAATGCTGAGAACCAGTTGTTGCTCCTCAGCAAAGGTGCAGACAG..................................................................................................................................TGTGATGTTCGAACAGCTTTCAAAAGATGGGCGGGTCTTTGAGGGTATAACAAGGGAACATCTTAAACAATATGCTGAAGCAGGATTGCGAACTCTTGTTGTAGCTTACCGTGAGCTTGATGAGAAAGAGTTCCAATCATGGGAACAAGAGTTTTTGAATGCCCAAGCTTCTGTAACAGCAGATAGAGATGCTTTGGTGGATGCTGCTGCTCAGAAGATTGAACGGGACATAATTCTCCTTGGTGTTACTGCTGTTGAGGACAAACTTCAAAAAGGG................................................................................................................GTCCCTGAATGCATTGATAAACTTGCAAAAGCTGGAATTAAGATTTGGGTCTTAACTGGTGATAAGATGGAAACAGCTATCAATATTGG..................................................................................GTATGCTTGTAGTTTATTAAGACCAGATATGAGGCAAATCATAATTACTTTAGATTCTCAAGACATATTGGACTTGGAAAACCAAGGAAACAAGGAGACTATAGCAAAG.......................................................................................GCTTCACATGATAGCATTACAAAGCAAATACGGGAGGGAATGTTACAAGTAAGCTCAAGCAGAGGAACTACTGCATCATTTGGTTTGGTCATTGATGGCAAATCATTGTCATTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E339796" ref_strand="+" ref_description="SGN-E339796 [cTOE-16-L4]">
      <seq>tctcttcaataaacggcgaagattcgatcagagtagccggggacgactaactgcaacgtaacaactataatatcttccgattcctaatcatcaatggcggagtagtccaaccgtttcatccccaaatttatcttccatacgtgttgttggatttcgattttccggtcaaggtctagtcagattcagtcctcgaaattcatcttttgcatatcacctcccatcggaaccctagattgctttgtcagttctggagtgtactcaggcatcagcttctagtggtagattgcatctagtcttcgactattttggtactccactgcatttcgggattgtactcaggtcgaatattagattatctctgtgagcagtctcactgaatatattggccagcgttcatctgtcttattttcacggacattttcaagttttttcagaaccgttgacggtaatattgtgtttgaaggtggtcaaggcaagtcattacgatcaaggttgttgggttataaaacttgtcaatctgagagataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="+" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="52575" stop="54178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52875" g_stop="53106" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53107" i_stop="53581" i_length="475">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53582" g_stop="53878" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="529" r_length="297" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="+" ref_id="SGN-E339796" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52875" e_stop="53106"/>
          <exon e_start="53582" e_stop="53878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTCAATAAACGGCGAAGATTCGATCAGAGTAGCCGGGGACGACTAACTGCAACGTAACAACTATAATATCTTCCGATTCCTAATCATCAATGGCGGAGTAGTCCAACCGTTTCATCCCCAAATTTATCTTCCATACGTGTTGTTGGATTTCGATTTTCCGGTCAAGGTCTAGTCAGATTCAGTCCTCGAAATTCATCTTTTGCATATCACCTCCCATCGGAACCCTAGGTCTGTACTCATTTCTGATTGAAATTGGTTGTTGCAATTCTCCGGATAACAGATTTATAGCTGTTATAGTTTGCAAAAGATCAAATTTATTGGCGATAGTGCAATATATGTTTCCTTTGCTTGTTTATTGGATTCGTTTTGTGTTAATTCCATGATGTGATACCTATGTGTTAGATTTATGAGACGATTTATTGAATTCAGCTGCATTGGACTTGAAGTCATTCGGACTCTACTTGTTTTGCGATACATGATATTAGATGTTGACTTATTTGCTTTGTTAGCTGAACTAATTCGTATCACATTAATTTCTCTTTTTTTTTCTTTTACTAGTTGGCATATTTCAACTTTTCTTTCTGTTTTATTGCTATTTTACAAATTTTATTGACCAATGACAGACACACACTCTTGTGTGTCTCATCTTATTTCAGTTTTCTTGTTTCTTCATTTCATTATCTTCATTCATTTGGCCCAGCAGATTGCTTTGTCAGTTCTGGAGTGTACTCAGGCATCAGCTTCTAGTGGTAGATTGCATCTAGTCTTCGACTATTTTGGTACTCCACTGCATTTCGGGATTGTACTCAGGTCGAATATTAGATTATCTCTGTGAGCAGTCTCACTGAATATATTGGCCAGCGTTCATCTGTCTTATTTTCACGGACATTTTCAAGTTTTTTCAGAACCGTTGACGGTAATATTGTGTTTGAAGGTGGTCAAGGCAAGTCATTACGATCAAGGTTGTTGGGTTATAAAACTTGTCAATCTGAGAGATAAA</genome_strand>
        <mrna_strand>TCTCTTCAATAAACGGCGAAGATTCGATCAGAGTAGCCGGGGACGACTAACTGCAACGTAACAACTATAATATCTTCCGATTCCTAATCATCAATGGCGGAGTAGTCCAACCGTTTCATCCCCAAATTTATCTTCCATACGTGTTGTTGGATTTCGATTTTCCGGTCAAGGTCTAGTCAGATTCAGTCCTCGAAATTCATCTTTTGCATATCACCTCCCATCGGAACCCTAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTTGTCAGTTCTGGAGTGTACTCAGGCATCAGCTTCTAGTGGTAGATTGCATCTAGTCTTCGACTATTTTGGTACTCCACTGCATTTCGGGATTGTACTCAGGTCGAATATTAGATTATCTCTGTGAGCAGTCTCACTGAATATATTGGCCAGCGTTCATCTGTCTTATTTTCACGGACATTTTCAAGTTTTTTCAGAACCGTTGACGGTAATATTGTGTTTGAAGGTGGTCAAGGCAAGTCATTACGATCAAGGTTGTTGGGTTATAAAACTTGTCAATCTGAGAGATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E411431" ref_strand="+" ref_description="SGN-E411431 [STM-14-N17]">
      <seq>caataaacggcgaagattcgatcagagtagccggggacgactaacttgcaacgtaacaactataatatcttccgattcctaatcatcaatggcggagtagtccaaccgtttcaaccccaaattcatcttccttaaacgtcgccgtttttatctggatttggattttccggtcaaagtctagtcagattgagtcctcgaaattcctcttttgcatatcagctcgcatcggaaccctagattgctttgtcagttctggagtgtactcaggcctcagcttctagtggcagattgcatctagccttcgactattttggtactccactgcatttctggattgtactcaggttgaatattagattatctctgtgagcggtctcactgaatatattggccaaggttcgttgtcttattttcgcggacattttcaagtattgttcagaatcgttgacggcaattttgtgtttgaaggtgatcaaggcaagtcattatgatcaaggttgttgggttataaaactagtcaaatctgagagataaaagtcgaccaattatatctagtgcattttaggaatttattcctgttgaagttattggtaggggaagttcatctcatgaggtagctggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="+" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="52581" stop="54267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52881" g_stop="53106" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.858"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53107" i_stop="53581" i_length="475">
            <donor d_prob="0.985" d_score="0.92"/>
            <acceptor a_prob="0.891" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53582" g_stop="53967" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="624" r_length="387" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="+" ref_id="SGN-E411431" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E411431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52881" e_stop="53106"/>
          <exon e_start="53582" e_stop="53967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATAAACGGCGAAGATTCGATCAGAGTAGCCGGGGACGACTAAC-TGCAACGTAACAACTATAATATCTTCCGATTCCTAATCATCAATGGCGGAGTAGTCCAACCGTTTCATCCCCAAATTTATCTTCC--ATACGT-G---TTG---T-TGGATTTCGATTTTCCGGTCAAGGTCTAGTCAGATTCAGTCCTCGAAATTCATCTTTTGCATATCACCTCCCATCGGAACCCTAGGTCTGTACTCATTTCTGATTGAAATTGGTTGTTGCAATTCTCCGGATAACAGATTTATAGCTGTTATAGTTTGCAAAAGATCAAATTTATTGGCGATAGTGCAATATATGTTTCCTTTGCTTGTTTATTGGATTCGTTTTGTGTTAATTCCATGATGTGATACCTATGTGTTAGATTTATGAGACGATTTATTGAATTCAGCTGCATTGGACTTGAAGTCATTCGGACTCTACTTGTTTTGCGATACATGATATTAGATGTTGACTTATTTGCTTTGTTAGCTGAACTAATTCGTATCACATTAATTTCTCTTTTTTTTTCTTTTACTAGTTGGCATATTTCAACTTTTCTTTCTGTTTTATTGCTATTTTACAAATTTTATTGACCAATGACAGACACACACTCTTGTGTGTCTCATCTTATTTCAGTTTTCTTGTTTCTTCATTTCATTATCTTCATTCATTTGGCCCAGCAGATTGCTTTGTCAGTTCTGGAGTGTACTCAGGCATCAGCTTCTAGTGGTAGATTGCATCTAGTCTTCGACTATTTTGGTACTCCACTGCATTTCGGGATTGTACTCAGGTCGAATATTAGATTATCTCTGTGAGCAGTCTCACTGAATATATTGGCCAGCGTTCATCTGTCTTATTTTCACGGACATTTTCAAGT-TTTTTCAGAACCGTTGACGGTAATATTGTGTTTGAAGGTGGTCAAGGCAAGTCATTACGATCAAGGTTGTTGGGTTATAAAACTTGTC-AATCTGAGAGATAAAAGTCGACCAATTATATCTAGTGCATTTTAGGAATTTATTCCTGTTGAAGTTATTGGTAGGGGAAGTTCATCTCATGAGGTAGCTGGAGC</genome_strand>
        <mrna_strand>CAATAAACGGCGAAGATTCGATCAGAGTAGCCGGGGACGACTAACTTGCAACGTAACAACTATAATATCTTCCGATTCCTAATCATCAATGGCGGAGTAGTCCAACCGTTTCAACCCCAAATTCATCTTCCTTAAACGTCGCCGTTTTTATCTGGATTTGGATTTTCCGGTCAAAGTCTAGTCAGATTGAGTCCTCGAAATTCCTCTTTTGCATATCAGCTCGCATCGGAACCCTAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTTGTCAGTTCTGGAGTGTACTCAGGCCTCAGCTTCTAGTGGCAGATTGCATCTAGCCTTCGACTATTTTGGTACTCCACTGCATTTCTGGATTGTACTCAGGTTGAATATTAGATTATCTCTGTGAGCGGTCTCACTGAATATATTGGCCAAGGTTCGT-TGTCTTATTTTCGCGGACATTTTCAAGTATTGTTCAGAATCGTTGACGGCAATTTTGTGTTTGAAGGTGATCAAGGCAAGTCATTATGATCAAGGTTGTTGGGTTATAAAACTAGTCAAATCTGAGAGATAAAAGTCGACCAATTATATCTAGTGCATTTTAGGAATTTATTCCTGTTGAAGTTATTGGTAGGGGAAGTTCATCTCATGAGGTAGCTGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E365780" ref_strand="+" ref_description="SGN-E365780 [cLPT-8-E13]">
      <seq>gaattcggcacgaggcgatcagagtcgccggggacgactaactgcaacgtaacaactataatatcttccgattcctaatcatcaatggcggagtagtccaaccgtttcatccccaaatttatcttccatacgtgttgtctggatttcgatcttccggtcaaagtctagtcagattcagtcctcgaaattcatcttttgcgtatcacctcgcatcggaaccctagattgctttgtcagtgctggagtgtactcaggcatcagcttctagtgggagattgcatctagtcttcgactattttggtactccactgcatttcgggattgtactcaggtcgaatattagattatctctgtgagcagtctcactgaatatattggccaacgttcgtctgtcttattttcacggacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="+" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="52588" stop="54067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52883" g_stop="53106" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53107" i_stop="53581" i_length="475">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.891" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53582" g_stop="53767" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="410" r_length="186" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="+" ref_id="SGN-E365780" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52883" e_stop="53106"/>
          <exon e_start="53582" e_stop="53767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAACGGCGAAGATTCGATCAGAGTAGCCGGGGACGACTAACTGCAACGTAACAACTATAATATCTTCCGATTCCTAATCATCAATGGCGGAGTAGTCCAACCGTTTCATCCCCAAATTTATCTTCCATACGTGTTGT-TGGATTTCGATTTTCCGGTCAAGGTCTAGTCAGATTCAGTCCTCGAAATTCATCTTTTGCATATCACCTCCCATCGGAACCCTAGGTCTGTACTCATTTCTGATTGAAATTGGTTGTTGCAATTCTCCGGATAACAGATTTATAGCTGTTATAGTTTGCAAAAGATCAAATTTATTGGCGATAGTGCAATATATGTTTCCTTTGCTTGTTTATTGGATTCGTTTTGTGTTAATTCCATGATGTGATACCTATGTGTTAGATTTATGAGACGATTTATTGAATTCAGCTGCATTGGACTTGAAGTCATTCGGACTCTACTTGTTTTGCGATACATGATATTAGATGTTGACTTATTTGCTTTGTTAGCTGAACTAATTCGTATCACATTAATTTCTCTTTTTTTTTCTTTTACTAGTTGGCATATTTCAACTTTTCTTTCTGTTTTATTGCTATTTTACAAATTTTATTGACCAATGACAGACACACACTCTTGTGTGTCTCATCTTATTTCAGTTTTCTTGTTTCTTCATTTCATTATCTTCATTCATTTGGCCCAGCAGATTGCTTTGTCAGTTCTGGAGTGTACTCAGGCATCAGCTTCTAGTGGTAGATTGCATCTAGTCTTCGACTATTTTGGTACTCCACTGCATTTCGGGATTGTACTCAGGTCGAATATTAGATTATCTCTGTGAGCAGTCTCACTGAATATATTGGCCAGCGTTCATCTGTCTTATTTTCACGGACAT</genome_strand>
        <mrna_strand>GAATTCGGC-ACGAGGCGATCAGAGTCGCCGGGGACGACTAACTGCAACGTAACAACTATAATATCTTCCGATTCCTAATCATCAATGGCGGAGTAGTCCAACCGTTTCATCCCCAAATTTATCTTCCATACGTGTTGTCTGGATTTCGATCTTCCGGTCAAAGTCTAGTCAGATTCAGTCCTCGAAATTCATCTTTTGCGTATCACCTCGCATCGGAACCCTAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTTGTCAGTGCTGGAGTGTACTCAGGCATCAGCTTCTAGTGGGAGATTGCATCTAGTCTTCGACTATTTTGGTACTCCACTGCATTTCGGGATTGTACTCAGGTCGAATATTAGATTATCTCTGTGAGCAGTCTCACTGAATATATTGGCCAACGTTCGTCTGTCTTATTTTCACGGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E708919" ref_strand="+" ref_description="SGN-E708919 [FA42AE11]">
      <seq>cttttatcagagtagccggggacgactaactgcaacgtaacccctataatatcttccgattcctaatcatcaatggcggagtagtccaaccgtttcatccccaaatttatcttccatacgtgttgttggatttcgattttccggtcaaggtctagtcagattcagtcctcgaaattcatcttttgcatatcacctcccatcggaaccctagattgctttgtcagttctggagtgtactcaggcatcagcttctagtggtagattgcatctagtcttcgactattttggtactccactgcatttcgggattgtactcaggtcgaatattagattatctctgtgagcagtctcactgaatatattggccagcgttcatctgtcttattttcacggacattttcaagttttttcagaaccgttgacggtaatattgtgtttgaaggtggtcaaggcaagtcattacgatcaaggttgttgggttataaaacttgtcaatctgagagataaaagtcgaccaattatatctagtgcattttaggaatttattcctgttgaagttattggtaggggaagttcatctcatgaggtagctggagctataaaatatctcgtggatcacaagcaaaatgttatataattggaagaagcctcacattcttttctctaaagtgcttgatgggttttatattgcaatataactagcaatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="+" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="52597" stop="54379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52896" g_stop="53106" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53107" i_stop="53581" i_length="475">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53582" g_stop="54079" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="709" r_length="498" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="+" ref_id="SGN-E708919" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52896" e_stop="53106"/>
          <exon e_start="53582" e_stop="54079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCGATCAGAGTAGCCGGGGACGACTAACTGCAACGTAACAACTATAATATCTTCCGATTCCTAATCATCAATGGCGGAGTAGTCCAACCGTTTCATCCCCAAATTTATCTTCCATACGTGTTGTTGGATTTCGATTTTCCGGTCAAGGTCTAGTCAGATTCAGTCCTCGAAATTCATCTTTTGCATATCACCTCCCATCGGAACCCTAGGTCTGTACTCATTTCTGATTGAAATTGGTTGTTGCAATTCTCCGGATAACAGATTTATAGCTGTTATAGTTTGCAAAAGATCAAATTTATTGGCGATAGTGCAATATATGTTTCCTTTGCTTGTTTATTGGATTCGTTTTGTGTTAATTCCATGATGTGATACCTATGTGTTAGATTTATGAGACGATTTATTGAATTCAGCTGCATTGGACTTGAAGTCATTCGGACTCTACTTGTTTTGCGATACATGATATTAGATGTTGACTTATTTGCTTTGTTAGCTGAACTAATTCGTATCACATTAATTTCTCTTTTTTTTTCTTTTACTAGTTGGCATATTTCAACTTTTCTTTCTGTTTTATTGCTATTTTACAAATTTTATTGACCAATGACAGACACACACTCTTGTGTGTCTCATCTTATTTCAGTTTTCTTGTTTCTTCATTTCATTATCTTCATTCATTTGGCCCAGCAGATTGCTTTGTCAGTTCTGGAGTGTACTCAGGCATCAGCTTCTAGTGGTAGATTGCATCTAGTCTTCGACTATTTTGGTACTCCACTGCATTTCGGGATTGTACTCAGGTCGAATATTAGATTATCTCTGTGAGCAGTCTCACTGAATATATTGGCCAGCGTTCATCTGTCTTATTTTCACGGACATTTTCAAGTTTTTTCAGAACCGTTGACGGTAATATTGTGTTTGAAGGTGGTCAAGGCAAGTCATTACGATCAAGGTTGTTGGGTTATAAAACTTGTCAATCTGAGAGATAAAAGTCGACCAATTATATCTAGTGCATTTTAGGAATTTATTCCTGTTGAAGTTATTGGTAGGGGAAGTTCATCTCATGAGGTAGCTGGAGCTATAAAATATCTCGTGGATCACAAGCAAAATGTTATATAATTGGAAGAAGCCTCACATTCTTTTCTCTAAAGTGCTTGATGGTTTTTATATTGCAATATAACTAGCAATGAT</genome_strand>
        <mrna_strand>CTTTTATCAGAGTAGCCGGGGACGACTAACTGCAACGTAACCCCTATAATATCTTCCGATTCCTAATCATCAATGGCGGAGTAGTCCAACCGTTTCATCCCCAAATTTATCTTCCATACGTGTTGTTGGATTTCGATTTTCCGGTCAAGGTCTAGTCAGATTCAGTCCTCGAAATTCATCTTTTGCATATCACCTCCCATCGGAACCCTAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTTGTCAGTTCTGGAGTGTACTCAGGCATCAGCTTCTAGTGGTAGATTGCATCTAGTCTTCGACTATTTTGGTACTCCACTGCATTTCGGGATTGTACTCAGGTCGAATATTAGATTATCTCTGTGAGCAGTCTCACTGAATATATTGGCCAGCGTTCATCTGTCTTATTTTCACGGACATTTTCAAGTTTTTTCAGAACCGTTGACGGTAATATTGTGTTTGAAGGTGGTCAAGGCAAGTCATTACGATCAAGGTTGTTGGGTTATAAAACTTGTCAATCTGAGAGATAAAAGTCGACCAATTATATCTAGTGCATTTTAGGAATTTATTCCTGTTGAAGTTATTGGTAGGGGAAGTTCATCTCATGAGGTAGCTGGAGCTATAAAATATCTCGTGGATCACAAGCAAAATGTTATATAATTGGAAGAAGCCTCACATTCTTTTCTCTAAAGTGCTTGATGGGTTTTATATTGCAATATAACTAGCAATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E348622" ref_strand="+" ref_description="SGN-E348622 [cTOF-30-I6]">
      <seq>tcgatcagagtagccggggacgaactaactgcaacgtaaccactataatatcttccgattcctaatcatcaatggcggagtagtccaaccgtttcatccccaaatttatcttccatacgtgttgttggatttcgattttccggtcaaggtctagtcagattcagtcctcgaaattcatcttttgcatatcacctcccatcggaaccctagattgctttgtcagttctggagtgtactcaggcatcagcttctagtggtagattgcatctagtcttcgactattttggtactccactgcatttcgggattgtactcaggtcgaatattagattatctctgtgagcagtctcactgaatatattggccagcgttcatctgtcttattttcacggacattttcaagttttttcagaaccgttgacggtaatattgtgtttgaaggtggtcaaggcaagtcattacgatcaaggttgttgggttataaaacttgtcaatctgagagataaaagtcgaccaattatatctagtgcattttaggaatttattcctgttgaagttattggagggggaagttcatctcatgaggtagctggagctataaaatatctcgtggatcacaagcaaaatgttatataattggaagaagcctcacattcttttctctaaagtgcttgatggtttttatattgcaatataactagcaatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="+" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="52598" stop="54379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52898" g_stop="53106" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53107" i_stop="53581" i_length="475">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53582" g_stop="54079" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="708" r_length="498" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="+" ref_id="SGN-E348622" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52898" e_stop="53106"/>
          <exon e_start="53582" e_stop="54079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATCAGAGTAGCCGGGGACG-ACTAACTGCAACGTAACAACTATAATATCTTCCGATTCCTAATCATCAATGGCGGAGTAGTCCAACCGTTTCATCCCCAAATTTATCTTCCATACGTGTTGTTGGATTTCGATTTTCCGGTCAAGGTCTAGTCAGATTCAGTCCTCGAAATTCATCTTTTGCATATCACCTCCCATCGGAACCCTAGGTCTGTACTCATTTCTGATTGAAATTGGTTGTTGCAATTCTCCGGATAACAGATTTATAGCTGTTATAGTTTGCAAAAGATCAAATTTATTGGCGATAGTGCAATATATGTTTCCTTTGCTTGTTTATTGGATTCGTTTTGTGTTAATTCCATGATGTGATACCTATGTGTTAGATTTATGAGACGATTTATTGAATTCAGCTGCATTGGACTTGAAGTCATTCGGACTCTACTTGTTTTGCGATACATGATATTAGATGTTGACTTATTTGCTTTGTTAGCTGAACTAATTCGTATCACATTAATTTCTCTTTTTTTTTCTTTTACTAGTTGGCATATTTCAACTTTTCTTTCTGTTTTATTGCTATTTTACAAATTTTATTGACCAATGACAGACACACACTCTTGTGTGTCTCATCTTATTTCAGTTTTCTTGTTTCTTCATTTCATTATCTTCATTCATTTGGCCCAGCAGATTGCTTTGTCAGTTCTGGAGTGTACTCAGGCATCAGCTTCTAGTGGTAGATTGCATCTAGTCTTCGACTATTTTGGTACTCCACTGCATTTCGGGATTGTACTCAGGTCGAATATTAGATTATCTCTGTGAGCAGTCTCACTGAATATATTGGCCAGCGTTCATCTGTCTTATTTTCACGGACATTTTCAAGTTTTTTCAGAACCGTTGACGGTAATATTGTGTTTGAAGGTGGTCAAGGCAAGTCATTACGATCAAGGTTGTTGGGTTATAAAACTTGTCAATCTGAGAGATAAAAGTCGACCAATTATATCTAGTGCATTTTAGGAATTTATTCCTGTTGAAGTTATTGGTAGGGGAAGTTCATCTCATGAGGTAGCTGGAGCTATAAAATATCTCGTGGATCACAAGCAAAATGTTATATAATTGGAAGAAGCCTCACATTCTTTTCTCTAAAGTGCTTGATGGTTTTTATATTGCAATATAACTAGCAATGAT</genome_strand>
        <mrna_strand>TCGATCAGAGTAGCCGGGGACGAACTAACTGCAACGTAACCACTATAATATCTTCCGATTCCTAATCATCAATGGCGGAGTAGTCCAACCGTTTCATCCCCAAATTTATCTTCCATACGTGTTGTTGGATTTCGATTTTCCGGTCAAGGTCTAGTCAGATTCAGTCCTCGAAATTCATCTTTTGCATATCACCTCCCATCGGAACCCTAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTTGTCAGTTCTGGAGTGTACTCAGGCATCAGCTTCTAGTGGTAGATTGCATCTAGTCTTCGACTATTTTGGTACTCCACTGCATTTCGGGATTGTACTCAGGTCGAATATTAGATTATCTCTGTGAGCAGTCTCACTGAATATATTGGCCAGCGTTCATCTGTCTTATTTTCACGGACATTTTCAAGTTTTTTCAGAACCGTTGACGGTAATATTGTGTTTGAAGGTGGTCAAGGCAAGTCATTACGATCAAGGTTGTTGGGTTATAAAACTTGTCAATCTGAGAGATAAAAGTCGACCAATTATATCTAGTGCATTTTAGGAATTTATTCCTGTTGAAGTTATTGGAGGGGGAAGTTCATCTCATGAGGTAGCTGGAGCTATAAAATATCTCGTGGATCACAAGCAAAATGTTATATAATTGGAAGAAGCCTCACATTCTTTTCTCTAAAGTGCTTGATGGTTTTTATATTGCAATATAACTAGCAATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E418774" ref_strand="+" ref_description="SGN-E418774 [STM-28-G10]">
      <seq>actaactgcaacgtaacaactataatatcttccgattcctaatcatcaatggcggaatagtccaatcgtttcatccccaaattcatcttccttaaacgtcgccgtttttatctggatttggattttccggtcaaagtctagtcagattcagtcctcgaaattcctcttttgcatatcagctcgcatcggaaccctagattgctttgtcagttctggagtgtactcaggcctcagctcctagtggcagattgcatctagccttcgactattttggtactccactgcatttctggattgtactcaggttgaatattagattatctctgtgagcggtctcactgaatatattggccaaggttcgttgtcttattttcgcggacattttcaagtattgttcagaatcgttgacggcaattttgtgtttgaaggtgatcaaggcaagtcattatgatcaaggttgttgggttataaaacttgtcaatctgagagataaaagtcgaccaattatatctagtgcattttaggaatttattcctgttgaagttattggtaggggaagttcatctcatgaggtagctggagctataaaatatctgtggatcacaagcaaaatgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="+" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="52620" stop="54302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52920" g_stop="53106" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="0.840"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53107" i_stop="53581" i_length="475">
            <donor d_prob="0.985" d_score="0.94"/>
            <acceptor a_prob="0.891" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53582" g_stop="54002" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="617" r_length="420" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="+" ref_id="SGN-E418774" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E418774" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52920" e_stop="53106"/>
          <exon e_start="53582" e_stop="54002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAACTGCAACGTAACAACTATAATATCTTCCGATTCCTAATCATCAATGGCGGAGTAGTCCAACCGTTTCATCCCCAAATTTATCTTCC--ATACGT----G---TTGT-TGGATTTCGATTTTCCGGTCAAGGTCTAGTCAGATTCAGTCCTCGAAATTCATCTTTTGCATATCACCTCCCATCGGAACCCTAGGTCTGTACTCATTTCTGATTGAAATTGGTTGTTGCAATTCTCCGGATAACAGATTTATAGCTGTTATAGTTTGCAAAAGATCAAATTTATTGGCGATAGTGCAATATATGTTTCCTTTGCTTGTTTATTGGATTCGTTTTGTGTTAATTCCATGATGTGATACCTATGTGTTAGATTTATGAGACGATTTATTGAATTCAGCTGCATTGGACTTGAAGTCATTCGGACTCTACTTGTTTTGCGATACATGATATTAGATGTTGACTTATTTGCTTTGTTAGCTGAACTAATTCGTATCACATTAATTTCTCTTTTTTTTTCTTTTACTAGTTGGCATATTTCAACTTTTCTTTCTGTTTTATTGCTATTTTACAAATTTTATTGACCAATGACAGACACACACTCTTGTGTGTCTCATCTTATTTCAGTTTTCTTGTTTCTTCATTTCATTATCTTCATTCATTTGGCCCAGCAGATTGCTTTGTCAGTTCTGGAGTGTACTCAGGCATCAGCTTCTAGTGGTAGATTGCATCTAGTCTTCGACTATTTTGGTACTCCACTGCATTTCGGGATTGTACTCAGGTCGAATATTAGATTATCTCTGTGAGCAGTCTCACTGAATATATTGGCCAGCGTTCATCTGTCTTATTTTCACGGACATTTTCAAGT-TTTTTCAGAACCGTTGACGGTAATATTGTGTTTGAAGGTGGTCAAGGCAAGTCATTACGATCAAGGTTGTTGGGTTATAAAACTTGTCAATCTGAGAGATAAAAGTCGACCAATTATATCTAGTGCATTTTAGGAATTTATTCCTGTTGAAGTTATTGGTAGGGGAAGTTCATCTCATGAGGTAGCTGGAGCTATAAAATATCTCGTGGATCACAAGCAAAATGTTA</genome_strand>
        <mrna_strand>ACTAACTGCAACGTAACAACTATAATATCTTCCGATTCCTAATCATCAATGGCGGAATAGTCCAATCGTTTCATCCCCAAATTCATCTTCCTTAAACGTCGCCGTTTTTATCTGGATTTGGATTTTCCGGTCAAAGTCTAGTCAGATTCAGTCCTCGAAATTCCTCTTTTGCATATCAGCTCGCATCGGAACCCTAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTTGTCAGTTCTGGAGTGTACTCAGGCCTCAGCTCCTAGTGGCAGATTGCATCTAGCCTTCGACTATTTTGGTACTCCACTGCATTTCTGGATTGTACTCAGGTTGAATATTAGATTATCTCTGTGAGCGGTCTCACTGAATATATTGGCCAAGGTTCGT-TGTCTTATTTTCGCGGACATTTTCAAGTATTGTTCAGAATCGTTGACGGCAATTTTGTGTTTGAAGGTGATCAAGGCAAGTCATTATGATCAAGGTTGTTGGGTTATAAAACTTGTCAATCTGAGAGATAAAAGTCGACCAATTATATCTAGTGCATTTTAGGAATTTATTCCTGTTGAAGTTATTGGTAGGGGAAGTTCATCTCATGAGGTAGCTGGAGCTATAAAATATCT-GTGGATCACAAGCAAAATGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E739423" ref_strand="+" ref_description="SGN-E739423 [LC17BF04]">
      <seq>cctttatttatcttccatacgtgttgttggatttcgattttccggtcaaggtctagtcagattcagtcctcgaaattcatcttttgcatatcacctcccatcggaaccctagattgctttgtcagttctggagtgtactcaggcatcagcttctagtggtagattgcatctagtcttcgactattttggtactccactgcatttcgggattgtactcaggtcgaatattagattatctctgtgagcagtctcactgaatatattggccagcgttcatctgtcttattttcacggacattttcaagttttttcagaaccgttgacggtaatattgtgtttgaaggtggtcaaggcaagtcattacgatcaaggttgttgggttataaaacttgtcaatctgagagataaaagtcgaccaattatatctagtgcattttaggaatttattcctgttgaagttattggtaggggaagttcatctcatgaggtagctggagctataaaatatctcgtggatcacaagcaaaatgttatataattggaagaagcctcacattcttttctctaaagtgcttgatggtttttatattgcaatataactagcaatgatggaacagctatcggagaaaaagttccctgtcaacgcaaaagattatacactatatgaggaagttggagatggtgtcagtgcaactgtgtatcgggctctgtgcattcctcttaatgaaattgttgcaatcaaggttctagatttggagaagtgcaacaatgatctggatggaatccggagagaggtgcagaccatgatcttgaatgatcatccaaatgtattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="+" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="52700" stop="55299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52995" g_stop="53106" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53107" i_stop="53581" i_length="475">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53582" g_stop="54245" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="776" r_length="664" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54246" i_stop="54942" i_length="697">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54943" g_stop="54999" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="777" r_stop="833" r_length="57" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="+" ref_id="SGN-E739423" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52995" e_stop="53106"/>
          <exon e_start="53582" e_stop="54245"/>
          <exon e_start="54943" e_stop="54999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAAATTTATCTTCCATACGTGTTGTTGGATTTCGATTTTCCGGTCAAGGTCTAGTCAGATTCAGTCCTCGAAATTCATCTTTTGCATATCACCTCCCATCGGAACCCTAGGTCTGTACTCATTTCTGATTGAAATTGGTTGTTGCAATTCTCCGGATAACAGATTTATAGCTGTTATAGTTTGCAAAAGATCAAATTTATTGGCGATAGTGCAATATATGTTTCCTTTGCTTGTTTATTGGATTCGTTTTGTGTTAATTCCATGATGTGATACCTATGTGTTAGATTTATGAGACGATTTATTGAATTCAGCTGCATTGGACTTGAAGTCATTCGGACTCTACTTGTTTTGCGATACATGATATTAGATGTTGACTTATTTGCTTTGTTAGCTGAACTAATTCGTATCACATTAATTTCTCTTTTTTTTTCTTTTACTAGTTGGCATATTTCAACTTTTCTTTCTGTTTTATTGCTATTTTACAAATTTTATTGACCAATGACAGACACACACTCTTGTGTGTCTCATCTTATTTCAGTTTTCTTGTTTCTTCATTTCATTATCTTCATTCATTTGGCCCAGCAGATTGCTTTGTCAGTTCTGGAGTGTACTCAGGCATCAGCTTCTAGTGGTAGATTGCATCTAGTCTTCGACTATTTTGGTACTCCACTGCATTTCGGGATTGTACTCAGGTCGAATATTAGATTATCTCTGTGAGCAGTCTCACTGAATATATTGGCCAGCGTTCATCTGTCTTATTTTCACGGACATTTTCAAGTTTTTTCAGAACCGTTGACGGTAATATTGTGTTTGAAGGTGGTCAAGGCAAGTCATTACGATCAAGGTTGTTGGGTTATAAAACTTGTCAATCTGAGAGATAAAAGTCGACCAATTATATCTAGTGCATTTTAGGAATTTATTCCTGTTGAAGTTATTGGTAGGGGAAGTTCATCTCATGAGGTAGCTGGAGCTATAAAATATCTCGTGGATCACAAGCAAAATGTTATATAATTGGAAGAAGCCTCACATTCTTTTCTCTAAAGTGCTTGATGGTTTTTATATTGCAATATAACTAGCAATGATGGAACAGCTATCGGAGAAAAAGTTCCCTGTCAACGCAAAAGATTATACACTATATGAGGAAGTTGGAGATGGTGTCAGTGCAACTGTGTATCGGGCTCTGTGCATTCCTCTTAATGAAATTGTTGCAATCAAGGTTCTAGATTTGGAGAAGTGCAACAATGATCTGGTAAGTCTGCTATCTATATATGTCTTTGAGATACGCTAGATGGAAAATGCCTTGGTGTTGAATATGGTTTAAAGTCAGAATGTTGGTGTTGCGAACCTCCTTTTTATTAGATATGTTCTTGTTACCTGATTATTTTTTATGAAGTGTCTTTTCTCTTGAAAAGGAATTGGGTGTATTGTTTGAAGGTCGCATGACTATATACTTATTTGATCCATCTACATAAGGAGGCAAGTCTCCAGACTCTTGTCTACTATAGATTCAGACCTGTACTAGTCTATACTATTAATAAAGCCCCAACTCTTTTGAGTAAATATCTTGTTCATGCATTTAAGTTTGAAGCACAATGTTCTCAGGTTTGCATTACTAGTTCCAATGAAGATAGGACTACATTAGTGTGTTACTATAATCTACTGTCTGCTTTTAGGCCATAGACTCTTTTAGTTTTTACATACACCTTTCTTATATTTTGTCCATCTTTTAAACAGCTTAATCTAATTAAATATAAAAATCAAAATTACGACATTCACCAGTGCAGACTGTACATCATATCCAGTAATTATTCTGGCAGAATGTGCCACATTTATTCATAATTAATACTCCCTTCAAAAGAAAATCTTTTAAGGAGCACTTGTGGGCCTAATGTATGCCTCCTTTCAATTGCTGAAGCTTCCAGAATATTTTTTTGTGATTTGAATAGGATGGAATCCGGAGAGAGGTGCAGACCATGATCTTGATTGATCATCCAAATGTATTG</genome_strand>
        <mrna_strand>CCTTTATTTATCTTCCATACGTGTTGTTGGATTTCGATTTTCCGGTCAAGGTCTAGTCAGATTCAGTCCTCGAAATTCATCTTTTGCATATCACCTCCCATCGGAACCCTAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTTGTCAGTTCTGGAGTGTACTCAGGCATCAGCTTCTAGTGGTAGATTGCATCTAGTCTTCGACTATTTTGGTACTCCACTGCATTTCGGGATTGTACTCAGGTCGAATATTAGATTATCTCTGTGAGCAGTCTCACTGAATATATTGGCCAGCGTTCATCTGTCTTATTTTCACGGACATTTTCAAGTTTTTTCAGAACCGTTGACGGTAATATTGTGTTTGAAGGTGGTCAAGGCAAGTCATTACGATCAAGGTTGTTGGGTTATAAAACTTGTCAATCTGAGAGATAAAAGTCGACCAATTATATCTAGTGCATTTTAGGAATTTATTCCTGTTGAAGTTATTGGTAGGGGAAGTTCATCTCATGAGGTAGCTGGAGCTATAAAATATCTCGTGGATCACAAGCAAAATGTTATATAATTGGAAGAAGCCTCACATTCTTTTCTCTAAAGTGCTTGATGGTTTTTATATTGCAATATAACTAGCAATGATGGAACAGCTATCGGAGAAAAAGTTCCCTGTCAACGCAAAAGATTATACACTATATGAGGAAGTTGGAGATGGTGTCAGTGCAACTGTGTATCGGGCTCTGTGCATTCCTCTTAATGAAATTGTTGCAATCAAGGTTCTAGATTTGGAGAAGTGCAACAATGATCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGAATCCGGAGAGAGGTGCAGACCATGATCTTGAATGATCATCCAAATGTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E285079" ref_strand="+" ref_description="SGN-E285079 [cLER-19-L8]">
      <seq>caaggtctagtcagattcagtcctcgaaattcatcttttgcatatcacctcccatcggaaccctagattgctttgtcagttctggagtgtactcaggcatcagcttctagtggtagattgcatctagtcttcgactattttggtactccactgcatttcgggattgtactcaggtcgaatattagattatctctgtgagcagtctcactgaatatattggccagcgttcatctgtcttattttcacggacattttcaagttttttcagaaccgttgacggtaatattgtgtttgaaggtggtcaaggcaagtcattacgatcaaggttgttgggttataaaacttgtcaatctgagagataaaagtcgaccaattatatctagtgcattttaggaatttattcctgttgaagttattggtaggggaagttcatctcatgaggtagctggagctataaaatatctcgtggatcacaagccaaatgttatataattggaagaagcctcacattcttttctctaaagtgcttgatggtttttatattgcaatataactagcaatgatggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="+" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="52741" stop="54383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53041" g_stop="53106" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53107" i_stop="53581" i_length="475">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53582" g_stop="54083" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="568" r_length="502" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="+" ref_id="SGN-E285079" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53041" e_stop="53106"/>
          <exon e_start="53582" e_stop="54083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGTCTAGTCAGATTCAGTCCTCGAAATTCATCTTTTGCATATCACCTCCCATCGGAACCCTAGGTCTGTACTCATTTCTGATTGAAATTGGTTGTTGCAATTCTCCGGATAACAGATTTATAGCTGTTATAGTTTGCAAAAGATCAAATTTATTGGCGATAGTGCAATATATGTTTCCTTTGCTTGTTTATTGGATTCGTTTTGTGTTAATTCCATGATGTGATACCTATGTGTTAGATTTATGAGACGATTTATTGAATTCAGCTGCATTGGACTTGAAGTCATTCGGACTCTACTTGTTTTGCGATACATGATATTAGATGTTGACTTATTTGCTTTGTTAGCTGAACTAATTCGTATCACATTAATTTCTCTTTTTTTTTCTTTTACTAGTTGGCATATTTCAACTTTTCTTTCTGTTTTATTGCTATTTTACAAATTTTATTGACCAATGACAGACACACACTCTTGTGTGTCTCATCTTATTTCAGTTTTCTTGTTTCTTCATTTCATTATCTTCATTCATTTGGCCCAGCAGATTGCTTTGTCAGTTCTGGAGTGTACTCAGGCATCAGCTTCTAGTGGTAGATTGCATCTAGTCTTCGACTATTTTGGTACTCCACTGCATTTCGGGATTGTACTCAGGTCGAATATTAGATTATCTCTGTGAGCAGTCTCACTGAATATATTGGCCAGCGTTCATCTGTCTTATTTTCACGGACATTTTCAAGTTTTTTCAGAACCGTTGACGGTAATATTGTGTTTGAAGGTGGTCAAGGCAAGTCATTACGATCAAGGTTGTTGGGTTATAAAACTTGTCAATCTGAGAGATAAAAGTCGACCAATTATATCTAGTGCATTTTAGGAATTTATTCCTGTTGAAGTTATTGGTAGGGGAAGTTCATCTCATGAGGTAGCTGGAGCTATAAAATATCTCGTGGATCACAAGCAAAATGTTATATAATTGGAAGAAGCCTCACATTCTTTTCTCTAAAGTGCTTGATGGTTTTTATATTGCAATATAACTAGCAATGATGGAA</genome_strand>
        <mrna_strand>CAAGGTCTAGTCAGATTCAGTCCTCGAAATTCATCTTTTGCATATCACCTCCCATCGGAACCCTAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTTGTCAGTTCTGGAGTGTACTCAGGCATCAGCTTCTAGTGGTAGATTGCATCTAGTCTTCGACTATTTTGGTACTCCACTGCATTTCGGGATTGTACTCAGGTCGAATATTAGATTATCTCTGTGAGCAGTCTCACTGAATATATTGGCCAGCGTTCATCTGTCTTATTTTCACGGACATTTTCAAGTTTTTTCAGAACCGTTGACGGTAATATTGTGTTTGAAGGTGGTCAAGGCAAGTCATTACGATCAAGGTTGTTGGGTTATAAAACTTGTCAATCTGAGAGATAAAAGTCGACCAATTATATCTAGTGCATTTTAGGAATTTATTCCTGTTGAAGTTATTGGTAGGGGAAGTTCATCTCATGAGGTAGCTGGAGCTATAAAATATCTCGTGGATCACAAGCCAAATGTTATATAATTGGAAGAAGCCTCACATTCTTTTCTCTAAAGTGCTTGATGGTTTTTATATTGCAATATAACTAGCAATGATGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E574304" ref_strand="+" ref_description="SGN-E574304 [33751]">
      <seq>aaaagattatacattatatgaggaagttggagatggtgtcagtgcaactgtgtatcgggctctgtgcattcctcttaatgaaattgttgcaatcaaggttctagatttggagaagtgcaacaatgatctggatggaatccggagagaggtccagaccatgatcttgattgatcatccaaatgtattgcgtgcacactgctcattcactgcaggtcacagtctttgggttgtcatgccattcatggctggaggatcttgccttcatatcatgaaatcttcttatcctgatggttttgaagagcctgtaattgctacactattgcgcgaggtcctcaaagcccttgtatatcttcattaccatggacacatccatagagatgtaaaggctgggaacattttgattgattcaaatggtgctattaaattggcagattttggagttgctgcttgcatgtttgatactggtgataggcagcgttcaagaaatacttttgttggaactccatgctggatggctcccgaagtgatgcagcaactgcatggatatgattttaaagcagatatatggtcgtttggaataacagcccttggaacttgctcatggctcatgcaccattctccaagtacccacccatgaaaggttctgctgatgaccctataagaatgcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="+" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="53816" stop="56437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54116" g_stop="54245" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54246" i_stop="54942" i_length="697">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54943" g_stop="55197" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="385" r_length="255" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55198" i_stop="55556" i_length="359">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55557" g_stop="55681" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="510" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55682" i_stop="55799" i_length="118">
            <donor d_prob="0.931" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55800" g_stop="55844" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="555" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55845" i_stop="55927" i_length="83">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.898" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="55928" g_stop="56009" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="640" r_length="85" r_score="0.915"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="56010" i_stop="56109" i_length="100">
            <donor d_prob="0.985" d_score="0.87"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="56110" g_stop="56138" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="670" r_length="30" r_score="0.862"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="+" ref_id="SGN-E574304" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E574304" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54116" e_stop="54245"/>
          <exon e_start="54943" e_stop="55197"/>
          <exon e_start="55557" e_stop="55681"/>
          <exon e_start="55800" e_stop="55844"/>
          <exon e_start="55928" e_stop="56009"/>
          <exon e_start="56110" e_stop="56138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGATTATACACTATATGAGGAAGTTGGAGATGGTGTCAGTGCAACTGTGTATCGGGCTCTGTGCATTCCTCTTAATGAAATTGTTGCAATCAAGGTTCTAGATTTGGAGAAGTGCAACAATGATCTGGTAAGTCTGCTATCTATATATGTCTTTGAGATACGCTAGATGGAAAATGCCTTGGTGTTGAATATGGTTTAAAGTCAGAATGTTGGTGTTGCGAACCTCCTTTTTATTAGATATGTTCTTGTTACCTGATTATTTTTTATGAAGTGTCTTTTCTCTTGAAAAGGAATTGGGTGTATTGTTTGAAGGTCGCATGACTATATACTTATTTGATCCATCTACATAAGGAGGCAAGTCTCCAGACTCTTGTCTACTATAGATTCAGACCTGTACTAGTCTATACTATTAATAAAGCCCCAACTCTTTTGAGTAAATATCTTGTTCATGCATTTAAGTTTGAAGCACAATGTTCTCAGGTTTGCATTACTAGTTCCAATGAAGATAGGACTACATTAGTGTGTTACTATAATCTACTGTCTGCTTTTAGGCCATAGACTCTTTTAGTTTTTACATACACCTTTCTTATATTTTGTCCATCTTTTAAACAGCTTAATCTAATTAAATATAAAAATCAAAATTACGACATTCACCAGTGCAGACTGTACATCATATCCAGTAATTATTCTGGCAGAATGTGCCACATTTATTCATAATTAATACTCCCTTCAAAAGAAAATCTTTTAAGGAGCACTTGTGGGCCTAATGTATGCCTCCTTTCAATTGCTGAAGCTTCCAGAATATTTTTTTGTGATTTGAATAGGATGGAATCCGGAGAGAGGTGCAGACCATGATCTTGATTGATCATCCAAATGTATTGCGTGCACACTGCTCATTCACTGCAGGTCACAGCCTTTGGGTTGTCATGCCATTCATGGCTGGAGGATCTTGCCTTCATATCATGAAATCTTCTTATCCTGATGGTTTTGAAGAGCCTGTAATTGCTACATTATTGCGCGAGGTCCTCAAAGCCCTTGTATATCTTCATTACCATGGACACATCCATAGAGATGTAAAGGTATCACTGTGTTATCTGCTTTTGTGGAACAACAGTTTAAGCATTCTTTACTAAATGTTTGCTGAAGAAGAGAGCTGATGCTAATTTTTTGTACATATGTTTTTTTAGTCTAGGATTTTGAGCCGCTGTCTTGATCATGTTTGTTAAGTTTCTCTTTCTCTTTACCCTTCTTCCTCCTCTTCTTTTCTCCCCATGGATAACATTTTCTCCCCTCACTATTAACCAAATTGGCAAAGTAATTAGCAAATGGGAATATTTTTTAGCTAATCTTATCTGAGCACTCTCATTTTCCTGACTCCAGCATGCATACTGATGCCAGTTTCAGCTTTGGCTTATATTTTGGTATGTCTTCTCTGCAGGCTGGGAACATTTTGATTGATTCAAATGGTGCTATTAAATTGGCAGATTTTGGAGTTGCTGCTTGCATGTTTGATACTGGTGATAGGCAGCGTTCAAGAAATACTTTTGTTGGAACTCCGTGCTGGTAAGTTCCCTAGGCTGCGGTGAGGTGCAATTTTTATTTGTTTGTGTCATCATAATAGGGACCAACTCTTTTACTTGTAATCAGGATTCTTTTTTTTTTCTTTTGAATTCTTGAATAGGATGGCTCCCGAAGTGATGCAGCAACTACATGGATATGATTTTAAGTAAGTACCTGATCTGCATATCTGTTCTATTATTGGTTCTAGGTCACGTCTCATGCCTTCAAATAATTGTTTCAAATCAACAGAGCAGATATATGGTCATTTGGAATAACAGCCCTTG-AACTTGCTCATGG-TCATGCACCATTCTCCAAGTACCCACCCATG-AAGGTTAATAGATGTTCTTTGCTGTACGAACAATCAATGAAGTGGTTTCAAGTTCTCTGAAAATTCGTTCTTTTGTGATCCTTTCTTTCTCCTTGTAATTCAGGTTCTGCTGATGACCCTA-CAGAATGCACC</genome_strand>
        <mrna_strand>AAAAGATTATACATTATATGAGGAAGTTGGAGATGGTGTCAGTGCAACTGTGTATCGGGCTCTGTGCATTCCTCTTAATGAAATTGTTGCAATCAAGGTTCTAGATTTGGAGAAGTGCAACAATGATCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGAATCCGGAGAGAGGTCCAGACCATGATCTTGATTGATCATCCAAATGTATTGCGTGCACACTGCTCATTCACTGCAGGTCACAGTCTTTGGGTTGTCATGCCATTCATGGCTGGAGGATCTTGCCTTCATATCATGAAATCTTCTTATCCTGATGGTTTTGAAGAGCCTGTAATTGCTACACTATTGCGCGAGGTCCTCAAAGCCCTTGTATATCTTCATTACCATGGACACATCCATAGAGATGTAAAG.......................................................................................................................................................................................................................................................................................................................................................................GCTGGGAACATTTTGATTGATTCAAATGGTGCTATTAAATTGGCAGATTTTGGAGTTGCTGCTTGCATGTTTGATACTGGTGATAGGCAGCGTTCAAGAAATACTTTTGTTGGAACTCCATGCTG......................................................................................................................GATGGCTCCCGAAGTGATGCAGCAACTGCATGGATATGATTTTAA...................................................................................AGCAGATATATGGTCGTTTGGAATAACAGCCCTTGGAACTTGCTCATGGCTCATGCACCATTCTCCAAGTACCCACCCATGAAAG....................................................................................................GTTCTGCTGATGACCCTATAAGAATGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E255151" ref_strand="+" ref_description="SGN-E255151 [cLEG-31-I17]">
      <seq>tcagtgcaactgtgtatcgggctctgtgcattcctcttaatgaaattgttgcaatcaaggttctagatttggagaagtgcaacaatgatctggatggaatccggagagaggtgcagaccatgatcttgattgatcatccaaatgtattgcgtgcacactgctcattcactgcaggtcacagcctttgggttgtcatgccattcatggctggaggatcttgccttcatatcatgaaatcttcttatcctgatggttttgaagagcctgtaattgctacattattgcgcgaggtcctcaaagcccttgtatatcttcattaccatggacacatccatagagatgtaaaggctgggaacattttgattgattcaaatggtgctattaaattggcagattttggagttgctgcttgcatgtttgatactggtgataggcagcgttcaagaaatacttttgttggaactccgtgctggatggctcccgaagtgatgcagcaactacatggatatgattttaaagcagatatatggtcatttggaataacagcccttgaacttgctcatggtcatgcaccattctccaagtacccacccatgaaggttctgctgatgaccctacagaatgcacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="+" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="53854" stop="56439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54154" g_stop="54245" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54246" i_stop="54942" i_length="697">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54943" g_stop="55197" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="347" r_length="255" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55198" i_stop="55556" i_length="359">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55557" g_stop="55681" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="472" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55682" i_stop="55799" i_length="118">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55800" g_stop="55844" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="517" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55845" i_stop="55927" i_length="83">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="55928" g_stop="56009" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="599" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="56010" i_stop="56109" i_length="100">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="56110" g_stop="56139" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="629" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="+" ref_id="SGN-E255151" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54154" e_stop="54245"/>
          <exon e_start="54943" e_stop="55197"/>
          <exon e_start="55557" e_stop="55681"/>
          <exon e_start="55800" e_stop="55844"/>
          <exon e_start="55928" e_stop="56009"/>
          <exon e_start="56110" e_stop="56139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTGCAACTGTGTATCGGGCTCTGTGCATTCCTCTTAATGAAATTGTTGCAATCAAGGTTCTAGATTTGGAGAAGTGCAACAATGATCTGGTAAGTCTGCTATCTATATATGTCTTTGAGATACGCTAGATGGAAAATGCCTTGGTGTTGAATATGGTTTAAAGTCAGAATGTTGGTGTTGCGAACCTCCTTTTTATTAGATATGTTCTTGTTACCTGATTATTTTTTATGAAGTGTCTTTTCTCTTGAAAAGGAATTGGGTGTATTGTTTGAAGGTCGCATGACTATATACTTATTTGATCCATCTACATAAGGAGGCAAGTCTCCAGACTCTTGTCTACTATAGATTCAGACCTGTACTAGTCTATACTATTAATAAAGCCCCAACTCTTTTGAGTAAATATCTTGTTCATGCATTTAAGTTTGAAGCACAATGTTCTCAGGTTTGCATTACTAGTTCCAATGAAGATAGGACTACATTAGTGTGTTACTATAATCTACTGTCTGCTTTTAGGCCATAGACTCTTTTAGTTTTTACATACACCTTTCTTATATTTTGTCCATCTTTTAAACAGCTTAATCTAATTAAATATAAAAATCAAAATTACGACATTCACCAGTGCAGACTGTACATCATATCCAGTAATTATTCTGGCAGAATGTGCCACATTTATTCATAATTAATACTCCCTTCAAAAGAAAATCTTTTAAGGAGCACTTGTGGGCCTAATGTATGCCTCCTTTCAATTGCTGAAGCTTCCAGAATATTTTTTTGTGATTTGAATAGGATGGAATCCGGAGAGAGGTGCAGACCATGATCTTGATTGATCATCCAAATGTATTGCGTGCACACTGCTCATTCACTGCAGGTCACAGCCTTTGGGTTGTCATGCCATTCATGGCTGGAGGATCTTGCCTTCATATCATGAAATCTTCTTATCCTGATGGTTTTGAAGAGCCTGTAATTGCTACATTATTGCGCGAGGTCCTCAAAGCCCTTGTATATCTTCATTACCATGGACACATCCATAGAGATGTAAAGGTATCACTGTGTTATCTGCTTTTGTGGAACAACAGTTTAAGCATTCTTTACTAAATGTTTGCTGAAGAAGAGAGCTGATGCTAATTTTTTGTACATATGTTTTTTTAGTCTAGGATTTTGAGCCGCTGTCTTGATCATGTTTGTTAAGTTTCTCTTTCTCTTTACCCTTCTTCCTCCTCTTCTTTTCTCCCCATGGATAACATTTTCTCCCCTCACTATTAACCAAATTGGCAAAGTAATTAGCAAATGGGAATATTTTTTAGCTAATCTTATCTGAGCACTCTCATTTTCCTGACTCCAGCATGCATACTGATGCCAGTTTCAGCTTTGGCTTATATTTTGGTATGTCTTCTCTGCAGGCTGGGAACATTTTGATTGATTCAAATGGTGCTATTAAATTGGCAGATTTTGGAGTTGCTGCTTGCATGTTTGATACTGGTGATAGGCAGCGTTCAAGAAATACTTTTGTTGGAACTCCGTGCTGGTAAGTTCCCTAGGCTGCGGTGAGGTGCAATTTTTATTTGTTTGTGTCATCATAATAGGGACCAACTCTTTTACTTGTAATCAGGATTCTTTTTTTTTTCTTTTGAATTCTTGAATAGGATGGCTCCCGAAGTGATGCAGCAACTACATGGATATGATTTTAAGTAAGTACCTGATCTGCATATCTGTTCTATTATTGGTTCTAGGTCACGTCTCATGCCTTCAAATAATTGTTTCAAATCAACAGAGCAGATATATGGTCATTTGGAATAACAGCCCTTGAACTTGCTCATGGTCATGCACCATTCTCCAAGTACCCACCCATGAAGGTTAATAGATGTTCTTTGCTGTACGAACAATCAATGAAGTGGTTTCAAGTTCTCTGAAAATTCGTTCTTTTGTGATCCTTTCTTTCTCCTTGTAATTCAGGTTCTGCTGATGACCCTACAGAATGCACCT</genome_strand>
        <mrna_strand>TCAGTGCAACTGTGTATCGGGCTCTGTGCATTCCTCTTAATGAAATTGTTGCAATCAAGGTTCTAGATTTGGAGAAGTGCAACAATGATCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGAATCCGGAGAGAGGTGCAGACCATGATCTTGATTGATCATCCAAATGTATTGCGTGCACACTGCTCATTCACTGCAGGTCACAGCCTTTGGGTTGTCATGCCATTCATGGCTGGAGGATCTTGCCTTCATATCATGAAATCTTCTTATCCTGATGGTTTTGAAGAGCCTGTAATTGCTACATTATTGCGCGAGGTCCTCAAAGCCCTTGTATATCTTCATTACCATGGACACATCCATAGAGATGTAAAG.......................................................................................................................................................................................................................................................................................................................................................................GCTGGGAACATTTTGATTGATTCAAATGGTGCTATTAAATTGGCAGATTTTGGAGTTGCTGCTTGCATGTTTGATACTGGTGATAGGCAGCGTTCAAGAAATACTTTTGTTGGAACTCCGTGCTG......................................................................................................................GATGGCTCCCGAAGTGATGCAGCAACTACATGGATATGATTTTAA...................................................................................AGCAGATATATGGTCATTTGGAATAACAGCCCTTGAACTTGCTCATGGTCATGCACCATTCTCCAAGTACCCACCCATGAAG....................................................................................................GTTCTGCTGATGACCCTACAGAATGCACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E248055" ref_strand="+" ref_description="SGN-E248055 [cLEF-47-D23]">
      <seq>agagaggtgcagaccatgatcttgattgatcatccaaatgtattgcgtgcacactgctcattcactgcaggtcacagcctttgggttgtcatgccattcatggctggaggatcttgccttcatatcatgaaatcttcttatcctgatggttttgaagagcctgtaattgctacattattgcgcgaggtcctcaaagcccttgtatatcttcattaccatggacacatccatagagatgtaaaggctgggaacattttgattgattcaaatggtgctattaaattggcagattttggagttgctgcttgcatgtttgatactggtgataggcagcgttcaagaaatacttttgttggaactccgtgctggatggctcccgaagtgatgcagcaactacatggatatgattttaaagcagatatatggtcatttggaataacagcccttgaacttgctcatggtcatgcaccattctccaagtacccacccatgaaggttctgctgatgaccctacagaatgcacctccaggcctggactatgaacgggacaagagattctctaagtcttttaaagaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="+" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="54655" stop="56484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54955" g_stop="55197" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55198" i_stop="55556" i_length="359">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55557" g_stop="55681" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="368" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55682" i_stop="55799" i_length="118">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55800" g_stop="55844" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="413" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55845" i_stop="55927" i_length="83">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55928" g_stop="56009" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="495" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56010" i_stop="56109" i_length="100">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56110" g_stop="56178" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="564" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="56179" i_stop="56244" i_length="66">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="56245" g_stop="56259" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="579" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="+" ref_id="SGN-E248055" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248055" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54955" e_stop="55197"/>
          <exon e_start="55557" e_stop="55681"/>
          <exon e_start="55800" e_stop="55844"/>
          <exon e_start="55928" e_stop="56009"/>
          <exon e_start="56110" e_stop="56178"/>
          <exon e_start="56245" e_stop="56259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGGTGCAGACCATGATCTTGATTGATCATCCAAATGTATTGCGTGCACACTGCTCATTCACTGCAGGTCACAGCCTTTGGGTTGTCATGCCATTCATGGCTGGAGGATCTTGCCTTCATATCATGAAATCTTCTTATCCTGATGGTTTTGAAGAGCCTGTAATTGCTACATTATTGCGCGAGGTCCTCAAAGCCCTTGTATATCTTCATTACCATGGACACATCCATAGAGATGTAAAGGTATCACTGTGTTATCTGCTTTTGTGGAACAACAGTTTAAGCATTCTTTACTAAATGTTTGCTGAAGAAGAGAGCTGATGCTAATTTTTTGTACATATGTTTTTTTAGTCTAGGATTTTGAGCCGCTGTCTTGATCATGTTTGTTAAGTTTCTCTTTCTCTTTACCCTTCTTCCTCCTCTTCTTTTCTCCCCATGGATAACATTTTCTCCCCTCACTATTAACCAAATTGGCAAAGTAATTAGCAAATGGGAATATTTTTTAGCTAATCTTATCTGAGCACTCTCATTTTCCTGACTCCAGCATGCATACTGATGCCAGTTTCAGCTTTGGCTTATATTTTGGTATGTCTTCTCTGCAGGCTGGGAACATTTTGATTGATTCAAATGGTGCTATTAAATTGGCAGATTTTGGAGTTGCTGCTTGCATGTTTGATACTGGTGATAGGCAGCGTTCAAGAAATACTTTTGTTGGAACTCCGTGCTGGTAAGTTCCCTAGGCTGCGGTGAGGTGCAATTTTTATTTGTTTGTGTCATCATAATAGGGACCAACTCTTTTACTTGTAATCAGGATTCTTTTTTTTTTCTTTTGAATTCTTGAATAGGATGGCTCCCGAAGTGATGCAGCAACTACATGGATATGATTTTAAGTAAGTACCTGATCTGCATATCTGTTCTATTATTGGTTCTAGGTCACGTCTCATGCCTTCAAATAATTGTTTCAAATCAACAGAGCAGATATATGGTCATTTGGAATAACAGCCCTTGAACTTGCTCATGGTCATGCACCATTCTCCAAGTACCCACCCATGAAGGTTAATAGATGTTCTTTGCTGTACGAACAATCAATGAAGTGGTTTCAAGTTCTCTGAAAATTCGTTCTTTTGTGATCCTTTCTTTCTCCTTGTAATTCAGGTTCTGCTGATGACCCTACAGAATGCACCTCCAGGCCTGGACTATGAACGGGACAAGAGATTCTCTAAGGTTTGTGTGTTTGACAAACTTTTCATTCACTTACAGTTTGGTTCTGAATATTTGGTGCTTTTGCAGTCTTTTAAAGAAATG</genome_strand>
        <mrna_strand>AGAGAGGTGCAGACCATGATCTTGATTGATCATCCAAATGTATTGCGTGCACACTGCTCATTCACTGCAGGTCACAGCCTTTGGGTTGTCATGCCATTCATGGCTGGAGGATCTTGCCTTCATATCATGAAATCTTCTTATCCTGATGGTTTTGAAGAGCCTGTAATTGCTACATTATTGCGCGAGGTCCTCAAAGCCCTTGTATATCTTCATTACCATGGACACATCCATAGAGATGTAAAG.......................................................................................................................................................................................................................................................................................................................................................................GCTGGGAACATTTTGATTGATTCAAATGGTGCTATTAAATTGGCAGATTTTGGAGTTGCTGCTTGCATGTTTGATACTGGTGATAGGCAGCGTTCAAGAAATACTTTTGTTGGAACTCCGTGCTG......................................................................................................................GATGGCTCCCGAAGTGATGCAGCAACTACATGGATATGATTTTAA...................................................................................AGCAGATATATGGTCATTTGGAATAACAGCCCTTGAACTTGCTCATGGTCATGCACCATTCTCCAAGTACCCACCCATGAAG....................................................................................................GTTCTGCTGATGACCCTACAGAATGCACCTCCAGGCCTGGACTATGAACGGGACAAGAGATTCTCTAAG..................................................................TCTTTTAAAGAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E410713" ref_strand="+" ref_description="SGN-E410713 [PPI-17-J4]">
      <seq>aggcaaagcccttgtatatcttcattaccatggacacatccatagagatgtaaaggctgggaacattttgattgattcaaatggtgctattaaattggcagattttggagttgctgcttgcatgtttgatactggtgataggcagcgttcaagaaatacttttgttggaactccatgctggatggctcccgaagtgatgcagcaactgcatggatatgattttaaagcagatatatggtcgtttggaataacagcccttgaacttgctcatggtcatgcaccattctccaagtacccacccatgaaggttctgctgatgaccctacagaatgcacctccaggcctggactatgaacgggacaagagattctctaagtcttttaaagaaatggttgctgcttgcttagtaaaagatccaaagaagcgtccgtcttctgagaagcttttgaagcaccctttctttaaacaagcacgaggacatgattatttggcacgtacaatccttgatggccttccacctctaggtgatcgttttaggatgcttaaggctaaagaagcagattatcttttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="+" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="54846" stop="56844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55143" g_stop="55197" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55198" i_stop="55556" i_length="359">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55557" g_stop="55681" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="180" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55682" i_stop="55799" i_length="118">
            <donor d_prob="0.931" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55800" g_stop="55844" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="225" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55845" i_stop="55927" i_length="83">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.898" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55928" g_stop="56009" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="307" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56010" i_stop="56109" i_length="100">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56110" g_stop="56178" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="376" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="56179" i_stop="56244" i_length="66">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="56245" g_stop="56415" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="547" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="56416" i_stop="56519" i_length="104">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="56520" g_stop="56544" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="572" r_length="25" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="+" ref_id="SGN-E410713" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E410713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55143" e_stop="55197"/>
          <exon e_start="55557" e_stop="55681"/>
          <exon e_start="55800" e_stop="55844"/>
          <exon e_start="55928" e_stop="56009"/>
          <exon e_start="56110" e_stop="56178"/>
          <exon e_start="56245" e_stop="56415"/>
          <exon e_start="56520" e_stop="56544"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCAAAGCCCTTGTATATCTTCATTACCATGGACACATCCATAGAGATGTAAAGGTATCACTGTGTTATCTGCTTTTGTGGAACAACAGTTTAAGCATTCTTTACTAAATGTTTGCTGAAGAAGAGAGCTGATGCTAATTTTTTGTACATATGTTTTTTTAGTCTAGGATTTTGAGCCGCTGTCTTGATCATGTTTGTTAAGTTTCTCTTTCTCTTTACCCTTCTTCCTCCTCTTCTTTTCTCCCCATGGATAACATTTTCTCCCCTCACTATTAACCAAATTGGCAAAGTAATTAGCAAATGGGAATATTTTTTAGCTAATCTTATCTGAGCACTCTCATTTTCCTGACTCCAGCATGCATACTGATGCCAGTTTCAGCTTTGGCTTATATTTTGGTATGTCTTCTCTGCAGGCTGGGAACATTTTGATTGATTCAAATGGTGCTATTAAATTGGCAGATTTTGGAGTTGCTGCTTGCATGTTTGATACTGGTGATAGGCAGCGTTCAAGAAATACTTTTGTTGGAACTCCGTGCTGGTAAGTTCCCTAGGCTGCGGTGAGGTGCAATTTTTATTTGTTTGTGTCATCATAATAGGGACCAACTCTTTTACTTGTAATCAGGATTCTTTTTTTTTTCTTTTGAATTCTTGAATAGGATGGCTCCCGAAGTGATGCAGCAACTACATGGATATGATTTTAAGTAAGTACCTGATCTGCATATCTGTTCTATTATTGGTTCTAGGTCACGTCTCATGCCTTCAAATAATTGTTTCAAATCAACAGAGCAGATATATGGTCATTTGGAATAACAGCCCTTGAACTTGCTCATGGTCATGCACCATTCTCCAAGTACCCACCCATGAAGGTTAATAGATGTTCTTTGCTGTACGAACAATCAATGAAGTGGTTTCAAGTTCTCTGAAAATTCGTTCTTTTGTGATCCTTTCTTTCTCCTTGTAATTCAGGTTCTGCTGATGACCCTACAGAATGCACCTCCAGGCCTGGACTATGAACGGGACAAGAGATTCTCTAAGGTTTGTGTGTTTGACAAACTTTTCATTCACTTACAGTTTGGTTCTGAATATTTGGTGCTTTTGCAGTCTTTTAAAGAAATGGTTGCTGCTTGCTTAGTAAAAGATCCAAAGAAGCGTCCGTCTTCTGAGAAGCTTTTGAAGCACCCTTTCTTTAAACAAGCACGAGGACATGATTATTTGGCACGTACAATCCTTGATGGCCTTCCACCTCTAGGTGATCGTTTTAGGATGCTTAAGGTCTTGTGCCCATCTTATACTGTGCTTTTCTGGCTGATAGCATTTCCCAATTATACTGAAATTACATGTGATTCTGATTTGTACAATTTGAACTGCTCTATCAGGCTAGAGAAGCAGATTATCTTTTAC</genome_strand>
        <mrna_strand>AGGCAAAGCCCTTGTATATCTTCATTACCATGGACACATCCATAGAGATGTAAAG.......................................................................................................................................................................................................................................................................................................................................................................GCTGGGAACATTTTGATTGATTCAAATGGTGCTATTAAATTGGCAGATTTTGGAGTTGCTGCTTGCATGTTTGATACTGGTGATAGGCAGCGTTCAAGAAATACTTTTGTTGGAACTCCATGCTG......................................................................................................................GATGGCTCCCGAAGTGATGCAGCAACTGCATGGATATGATTTTAA...................................................................................AGCAGATATATGGTCGTTTGGAATAACAGCCCTTGAACTTGCTCATGGTCATGCACCATTCTCCAAGTACCCACCCATGAAG....................................................................................................GTTCTGCTGATGACCCTACAGAATGCACCTCCAGGCCTGGACTATGAACGGGACAAGAGATTCTCTAAG..................................................................TCTTTTAAAGAAATGGTTGCTGCTTGCTTAGTAAAAGATCCAAAGAAGCGTCCGTCTTCTGAGAAGCTTTTGAAGCACCCTTTCTTTAAACAAGCACGAGGACATGATTATTTGGCACGTACAATCCTTGATGGCCTTCCACCTCTAGGTGATCGTTTTAGGATGCTTAAG........................................................................................................GCTAAAGAAGCAGATTATCTTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E300206" ref_strand="+" ref_description="SGN-E300206 [cLEW-17-C12]">
      <seq>gaataacagcccttgaacttgctcatggtcatgcaccattctccaagtaccccacccatgaaggttctgctgatgaccctacagaatgcacctccaggcctggactatgaacgggacaagagattctctaagtcttttaaagaaatggttgctgcttgcttagtaaaagatccaaagaagcgtccgtcttctgagaagcttttgaagcaccctttctttaaacaagcacgaggacatgattatttggcacgtacaatccttgatggccttccacctctaggtgatcgttttaggatgcttaaggctagagaagcagattatcttttacagaaccaggcaatgtatgaggacaaggaccatttatcacagcaagagtatattcgtggtatcagtgcttggaatttcaatctggaggatctgaagaaccaagctgctcttcttccagattttgacgacattccagatgctgaagattcaagtaacagggggaagctaagggaggggaatggtgacgttggttctgtagtagaaaggcataatcagtcgagtgtcctatctcacgaggatgagatgaatggcaatcatgatttggatggttctcttgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="+" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="55648" stop="58553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55948" g_stop="56009" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56010" i_stop="56109" i_length="100">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56110" g_stop="56178" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="132" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56179" i_stop="56244" i_length="66">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56245" g_stop="56415" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="303" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56416" i_stop="56519" i_length="104">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56520" g_stop="56585" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="369" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56586" i_stop="57715" i_length="1130">
            <donor d_prob="0.456" d_score="1.00"/>
            <acceptor a_prob="0.844" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="57716" g_stop="57784" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="438" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="57785" i_stop="57882" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="57883" g_stop="58008" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="564" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="58009" i_stop="58209" i_length="201">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="58210" g_stop="58253" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="608" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="+" ref_id="SGN-E300206" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55948" e_stop="56009"/>
          <exon e_start="56110" e_stop="56178"/>
          <exon e_start="56245" e_stop="56415"/>
          <exon e_start="56520" e_stop="56585"/>
          <exon e_start="57716" e_stop="57784"/>
          <exon e_start="57883" e_stop="58008"/>
          <exon e_start="58210" e_stop="58253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATAACAGCCCTTGAACTTGCTCATGGTCATGCACCATTCTCCAAGTA-CCCACCCATGAAGGTTAATAGATGTTCTTTGCTGTACGAACAATCAATGAAGTGGTTTCAAGTTCTCTGAAAATTCGTTCTTTTGTGATCCTTTCTTTCTCCTTGTAATTCAGGTTCTGCTGATGACCCTACAGAATGCACCTCCAGGCCTGGACTATGAACGGGACAAGAGATTCTCTAAGGTTTGTGTGTTTGACAAACTTTTCATTCACTTACAGTTTGGTTCTGAATATTTGGTGCTTTTGCAGTCTTTTAAAGAAATGGTTGCTGCTTGCTTAGTAAAAGATCCAAAGAAGCGTCCGTCTTCTGAGAAGCTTTTGAAGCACCCTTTCTTTAAACAAGCACGAGGACATGATTATTTGGCACGTACAATCCTTGATGGCCTTCCACCTCTAGGTGATCGTTTTAGGATGCTTAAGGTCTTGTGCCCATCTTATACTGTGCTTTTCTGGCTGATAGCATTTCCCAATTATACTGAAATTACATGTGATTCTGATTTGTACAATTTGAACTGCTCTATCAGGCTAGAGAAGCAGATTATCTTTTACAGAACCAGGCAATGTATGAGGACAAGGACCATTTATCACAGGTGAAAACTGAATGTGCCTAAACTGCAGAATGTGGTAGAGAAATCTCACGATTCACAAATGTGCCCACAGCATCTTTTTGTGTTTCATTGCTGGAATTAAAGCATTTTGCTGCTCTGGGTTTTTGGCCATTGGTTGCGAGTCTGTATTTTTTATTTATACTTGTGAAGCTTCAATCCTCCTAAGTAGCTTACTTCGTATATCAAATGAAAATGAAAAATTCCCCTCCCCTCCTCTCCTTTTTTTTTTTTGAATAAGCAAGAAAAAAAATGCCTTATTTATTCTAACTACCAAGAACTTTAGAATGATAAGAGGAAGGTCCTGAACTACACTTCATTTTGTACGTGTTATTACATTGACTTCATTTTTAATTCGCTCTTAATTTATTTTCAAAAACTTTCATAAACATGCTGTAACCTAGTATTTCTGCCTACAACATATGTTATTATCATACTTCCTCCATTATTGTTATTATTTATTATTATACACATACATAGAGTGTGTCAAAAATATCTACTATTATTCGAGTATACAGCAAATCTGGATAATAAGCAAGATGAGAGGCTGTATTCTTTCCTCTTTTTTCTCAAACATTCACCAATATTTTGGAGAACCATAGTTAGCACTGGTGTGCGTATTTGAAAGCTCACCAAGAGATGTAACCTTGTTTACAAATTGTATAGTTGAGAGACATGCTAGAATGTGTGTACAAATCTGAGAAGACTTCAATGAGTTTGGGGAGACTTATTACTGCTATCTGATATAATTCCATCACAAGCTTTATCACATAAAATAGCTATTTCTGTTTTAGTTGGGAGGTCAAAGTACACAAATGGCTTTTGTGTTTTGTTGTAAATATACTTCTAGCTCTTTTAATCATGAAAAAATTATTATTAGCATGAAATGGGCCCGAATAGAGTGAAACAGATTTAGATGATTCTTAGAGATGATACCAACTACGTTACAGATTGAGGTGAGTGATTCTATTTGGGAAAGAACCTTGATGTGTTTTATTCCATCGTATTTGAGAAATCAAACTTGGCATCAGATGTTTGTGTAGCTTATGCGAATATACACACAAAAATATATTCAAGGTCAATCTCAATATAATTCTGAATATTCACTGATGCAGCAAGAGTATATTCGTGGTATCAGTGCTTGGAATTTCAATCTGGAGGATCTGAAGAACCAAGCTGCTCTTGTATGTACTTATTGTCCATTCACTTAGAACTATTAATTTTAGGTAATAATGTCTGGTGTCTATTAAATTTATTTATCCTTTCTTTATGGTGTCTGTAGCTTCCAGATTTTGACGACATTCCAGATGCTGAAGATTCAAGTAACAGGGGGAAGCTAAGGGAGGGGAATGGTGACGTTGGTTCTGTAGTAGAAAGGCATAATCAGTCGAGTGTCCTATCTCACGAGGTATTCATATTAACCATGTTGAAGTTCTATATTACTATTCTTTATATACTATTCCTTCTCGATGGATTGATGCTGCTATAAGTCTTCTGAAACTCTTGTCATACTCAATTGCCTCCAGTCTGTTATCTCTTTGGATATTTTACAAGTTATTCAAATATGTCCTTCATTATCGGATATATAATTGTTGATATCTCCATTCAGGATGAGATGAATGGCAATCATGATTTGGATGGTTCTCTTGCTGC</genome_strand>
        <mrna_strand>GAATAACAGCCCTTGAACTTGCTCATGGTCATGCACCATTCTCCAAGTACCCCACCCATGAAG....................................................................................................GTTCTGCTGATGACCCTACAGAATGCACCTCCAGGCCTGGACTATGAACGGGACAAGAGATTCTCTAAG..................................................................TCTTTTAAAGAAATGGTTGCTGCTTGCTTAGTAAAAGATCCAAAGAAGCGTCCGTCTTCTGAGAAGCTTTTGAAGCACCCTTTCTTTAAACAAGCACGAGGACATGATTATTTGGCACGTACAATCCTTGATGGCCTTCCACCTCTAGGTGATCGTTTTAGGATGCTTAAG........................................................................................................GCTAGAGAAGCAGATTATCTTTTACAGAACCAGGCAATGTATGAGGACAAGGACCATTTATCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGAGTATATTCGTGGTATCAGTGCTTGGAATTTCAATCTGGAGGATCTGAAGAACCAAGCTGCTCTT..................................................................................................CTTCCAGATTTTGACGACATTCCAGATGCTGAAGATTCAAGTAACAGGGGGAAGCTAAGGGAGGGGAATGGTGACGTTGGTTCTGTAGTAGAAAGGCATAATCAGTCGAGTGTCCTATCTCACGAG.........................................................................................................................................................................................................GATGAGATGAATGGCAATCATGATTTGGATGGTTCTCTTGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E460412" ref_strand="+" ref_description="SGN-E460412 [cPRO-31-A2]">
      <seq>tgatgaccctacagaatgcacctccaggcctggactatgaacgggacaagagattctctaagtcttttaaagaaatggttgctgcttgcttagtaaaagatccaaagaagcgtccgtcttctgagaagcttttgaagcaccctttctttaaacaagcacgaggacatgattatttggcacgtacaatccttgatggccttccacctctaggtgatcgttttaggatgcttaaggctaaagaagcagattatcttttacagaaccaggcaatgtatgaggacaaggaccatttgtcacagcaagagtatattcgtggtatcagtgcttggaatttcaatctggaggatctgaagaaccaagctgctcttcttccagattttgacgacattccagatgctgaagattcaagtaccagggggaagctaagggagggaaatggtgacgttggttctgtagcagaaaggcataatcagtcgagtgtcctatctcacgaggatgagatgaatgacaatcatgatttggatggttcacttgctgcatttcctattaagcctcttcaagcactcaagggatgttttgatatgtgtgaagatgacataactgctagtagtccangttggggagatactatgcaatcagagtctactcagcagaatgatatgctgtcactagcgaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="+" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="55817" stop="59462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56117" g_stop="56178" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56179" i_stop="56244" i_length="66">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56245" g_stop="56415" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="233" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56416" i_stop="56519" i_length="104">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56520" g_stop="56585" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="299" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56586" i_stop="57715" i_length="1130">
            <donor d_prob="0.456" d_score="0.98"/>
            <acceptor a_prob="0.844" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57716" g_stop="57784" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="368" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="57785" i_stop="57882" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="57883" g_stop="58008" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="494" r_length="126" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="58009" i_stop="58209" i_length="201">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="58210" g_stop="58283" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="568" r_length="74" r_score="0.973"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="58284" i_stop="59053" i_length="770">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="59054" g_stop="59164" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="679" r_length="111" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="+" ref_id="SGN-E460412" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E460412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56117" e_stop="56178"/>
          <exon e_start="56245" e_stop="56415"/>
          <exon e_start="56520" e_stop="56585"/>
          <exon e_start="57716" e_stop="57784"/>
          <exon e_start="57883" e_stop="58008"/>
          <exon e_start="58210" e_stop="58283"/>
          <exon e_start="59054" e_stop="59164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGACCCTACAGAATGCACCTCCAGGCCTGGACTATGAACGGGACAAGAGATTCTCTAAGGTTTGTGTGTTTGACAAACTTTTCATTCACTTACAGTTTGGTTCTGAATATTTGGTGCTTTTGCAGTCTTTTAAAGAAATGGTTGCTGCTTGCTTAGTAAAAGATCCAAAGAAGCGTCCGTCTTCTGAGAAGCTTTTGAAGCACCCTTTCTTTAAACAAGCACGAGGACATGATTATTTGGCACGTACAATCCTTGATGGCCTTCCACCTCTAGGTGATCGTTTTAGGATGCTTAAGGTCTTGTGCCCATCTTATACTGTGCTTTTCTGGCTGATAGCATTTCCCAATTATACTGAAATTACATGTGATTCTGATTTGTACAATTTGAACTGCTCTATCAGGCTAGAGAAGCAGATTATCTTTTACAGAACCAGGCAATGTATGAGGACAAGGACCATTTATCACAGGTGAAAACTGAATGTGCCTAAACTGCAGAATGTGGTAGAGAAATCTCACGATTCACAAATGTGCCCACAGCATCTTTTTGTGTTTCATTGCTGGAATTAAAGCATTTTGCTGCTCTGGGTTTTTGGCCATTGGTTGCGAGTCTGTATTTTTTATTTATACTTGTGAAGCTTCAATCCTCCTAAGTAGCTTACTTCGTATATCAAATGAAAATGAAAAATTCCCCTCCCCTCCTCTCCTTTTTTTTTTTTGAATAAGCAAGAAAAAAAATGCCTTATTTATTCTAACTACCAAGAACTTTAGAATGATAAGAGGAAGGTCCTGAACTACACTTCATTTTGTACGTGTTATTACATTGACTTCATTTTTAATTCGCTCTTAATTTATTTTCAAAAACTTTCATAAACATGCTGTAACCTAGTATTTCTGCCTACAACATATGTTATTATCATACTTCCTCCATTATTGTTATTATTTATTATTATACACATACATAGAGTGTGTCAAAAATATCTACTATTATTCGAGTATACAGCAAATCTGGATAATAAGCAAGATGAGAGGCTGTATTCTTTCCTCTTTTTTCTCAAACATTCACCAATATTTTGGAGAACCATAGTTAGCACTGGTGTGCGTATTTGAAAGCTCACCAAGAGATGTAACCTTGTTTACAAATTGTATAGTTGAGAGACATGCTAGAATGTGTGTACAAATCTGAGAAGACTTCAATGAGTTTGGGGAGACTTATTACTGCTATCTGATATAATTCCATCACAAGCTTTATCACATAAAATAGCTATTTCTGTTTTAGTTGGGAGGTCAAAGTACACAAATGGCTTTTGTGTTTTGTTGTAAATATACTTCTAGCTCTTTTAATCATGAAAAAATTATTATTAGCATGAAATGGGCCCGAATAGAGTGAAACAGATTTAGATGATTCTTAGAGATGATACCAACTACGTTACAGATTGAGGTGAGTGATTCTATTTGGGAAAGAACCTTGATGTGTTTTATTCCATCGTATTTGAGAAATCAAACTTGGCATCAGATGTTTGTGTAGCTTATGCGAATATACACACAAAAATATATTCAAGGTCAATCTCAATATAATTCTGAATATTCACTGATGCAGCAAGAGTATATTCGTGGTATCAGTGCTTGGAATTTCAATCTGGAGGATCTGAAGAACCAAGCTGCTCTTGTATGTACTTATTGTCCATTCACTTAGAACTATTAATTTTAGGTAATAATGTCTGGTGTCTATTAAATTTATTTATCCTTTCTTTATGGTGTCTGTAGCTTCCAGATTTTGACGACATTCCAGATGCTGAAGATTCAAGTAACAGGGGGAAGCTAAGGGAGGGGAATGGTGACGTTGGTTCTGTAGTAGAAAGGCATAATCAGTCGAGTGTCCTATCTCACGAGGTATTCATATTAACCATGTTGAAGTTCTATATTACTATTCTTTATATACTATTCCTTCTCGATGGATTGATGCTGCTATAAGTCTTCTGAAACTCTTGTCATACTCAATTGCCTCCAGTCTGTTATCTCTTTGGATATTTTACAAGTTATTCAAATATGTCCTTCATTATCGGATATATAATTGTTGATATCTCCATTCAGGATGAGATGAATGGCAATCATGATTTGGATGGTTCTCTTGCTGCATTTCCTATTAAGCCTCTTCAAGCACTCAAGTAAGAATTTTGTCTTCCTCCTGGTTCTGCTTCTTCTATTGGCATTTGATAGTAAATCCATCATCACCAACTCAAATTATAGCCAGTTGGTTTCATTAACCAGATGTGTGTGTGTGTGTTTACATATATAATTATATTTTGCCATTTGGAATGTGGTATTCCTTGGAAGCACAACCCTGTTTGCATTATAGGTATGTCTTGCTGAGTCTGGTACATTAAGGAATGTGATGTTGAAATATTACAACCTTTCTTGATGCTCAAGTGCTGTGGGTATAATGATCCGAGGTATAGAATTAGCATAGTCGTCATGCTAGTAATTGAGTTAAATGTGTATAAAATTAGCCAGTAATTGAGTTAAAGGTACAGAATTAGCCAGTTGGTTTTATGATCAAGGTCTACAGATTTTACTATGTGAAAGATTTAAAAGTTTTGGTTCTCATTGAGTGAAATAATGTGGTCTAACCTTCATTTTGGCCGGAATTTCTTTCAATTAGCTCCTCCTCCCGTGATTGGCCTTGAAAGCATGCTTGCATCAGATTAACAGATGAATGTAGTAACCTGCTCACAAAGTAGAAAGTGAGGATAAGTTTGTTGAAGGACCCATTGTCGAAGACAAGGGAAAGTCAGTTAAGCAAAAAAGTTCCAGAAATAGTGGAATTGTTATTATTAATAATCCTATGTAAAGAAAAAGTGGAATTATTATATTTCCGACTTATTAGTTTTTGTTCCTTCTGAAATTTATGTGTATATAAAATGTTGTACCAATGCAGGGGATGTTTTGATATGTGTGAAGATGACATAACTGCTAGTAGTCCAAGTTGGGAAGATACTATGCAATCAGAGTCTAATCAGCAGAATGATATGCTATCACTAGCAAAAGT</genome_strand>
        <mrna_strand>TGATGACCCTACAGAATGCACCTCCAGGCCTGGACTATGAACGGGACAAGAGATTCTCTAAG..................................................................TCTTTTAAAGAAATGGTTGCTGCTTGCTTAGTAAAAGATCCAAAGAAGCGTCCGTCTTCTGAGAAGCTTTTGAAGCACCCTTTCTTTAAACAAGCACGAGGACATGATTATTTGGCACGTACAATCCTTGATGGCCTTCCACCTCTAGGTGATCGTTTTAGGATGCTTAAG........................................................................................................GCTAAAGAAGCAGATTATCTTTTACAGAACCAGGCAATGTATGAGGACAAGGACCATTTGTCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGAGTATATTCGTGGTATCAGTGCTTGGAATTTCAATCTGGAGGATCTGAAGAACCAAGCTGCTCTT..................................................................................................CTTCCAGATTTTGACGACATTCCAGATGCTGAAGATTCAAGTACCAGGGGGAAGCTAAGGGAGGGAAATGGTGACGTTGGTTCTGTAGCAGAAAGGCATAATCAGTCGAGTGTCCTATCTCACGAG.........................................................................................................................................................................................................GATGAGATGAATGACAATCATGATTTGGATGGTTCACTTGCTGCATTTCCTATTAAGCCTCTTCAAGCACTCAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATGTTTTGATATGTGTGAAGATGACATAACTGCTAGTAGTCCANGTTGGGGAGATACTATGCAATCAGAGTCTACTCAGCAGAATGATATGCTGTCACTAGCGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E452595" ref_strand="+" ref_description="SGN-E452595 [cSTS-17-G4]">
      <seq>attctctaagtcttttaaagaaatggttgctgcttgcttagtaaaagatccaaagaagcgtccgtcttctgagaagcttttgaagcaccctttctttaaacaagcacgaggacatgattatttggcacgtacaatccttgatggccttccacctctaggtgatcgttttaggatgcttaaggctaaagaagcagattatcttttacagaaccaggcaatgtatgaggacaaggaccatttgtcacagcaagaagtatattcgtggtatcagtgcttggaatttcaatctggaggatctgaagaaccaagctgctcttcttccagattttgacgacattccagatgctgaagattcaagtaccagggggaagctaagggagggaaatggtgacgttggttctgtagcagaaaggcataatcagtcgagtgtcctatctcacgaggatgagatgaatgacaatcatgatttggatggttcacttgctgcatttcctattaagcctcttcaagcactcaagggatgttttgatatgtgtgaagatgacataactgctagtagtccaagttgggaagatactatgcnatcagagtctactcagcagaatgatatgctgtcactagcgaaaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="+" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="55943" stop="59466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56169" g_stop="56178" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56179" i_stop="56244" i_length="66">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56245" g_stop="56415" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="181" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56416" i_stop="56519" i_length="104">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56520" g_stop="56585" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="247" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56586" i_stop="57715" i_length="1130">
            <donor d_prob="0.456" d_score="0.98"/>
            <acceptor a_prob="0.844" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57716" g_stop="57784" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="317" r_length="70" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="57785" i_stop="57882" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="57883" g_stop="58008" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="443" r_length="126" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="58009" i_stop="58209" i_length="201">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="58210" g_stop="58283" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="517" r_length="74" r_score="0.973"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="58284" i_stop="59053" i_length="770">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="59054" g_stop="59166" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="630" r_length="113" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="+" ref_id="SGN-E452595" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E452595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56169" e_stop="56178"/>
          <exon e_start="56245" e_stop="56415"/>
          <exon e_start="56520" e_stop="56585"/>
          <exon e_start="57716" e_stop="57784"/>
          <exon e_start="57883" e_stop="58008"/>
          <exon e_start="58210" e_stop="58283"/>
          <exon e_start="59054" e_stop="59166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTCTAAGGTTTGTGTGTTTGACAAACTTTTCATTCACTTACAGTTTGGTTCTGAATATTTGGTGCTTTTGCAGTCTTTTAAAGAAATGGTTGCTGCTTGCTTAGTAAAAGATCCAAAGAAGCGTCCGTCTTCTGAGAAGCTTTTGAAGCACCCTTTCTTTAAACAAGCACGAGGACATGATTATTTGGCACGTACAATCCTTGATGGCCTTCCACCTCTAGGTGATCGTTTTAGGATGCTTAAGGTCTTGTGCCCATCTTATACTGTGCTTTTCTGGCTGATAGCATTTCCCAATTATACTGAAATTACATGTGATTCTGATTTGTACAATTTGAACTGCTCTATCAGGCTAGAGAAGCAGATTATCTTTTACAGAACCAGGCAATGTATGAGGACAAGGACCATTTATCACAGGTGAAAACTGAATGTGCCTAAACTGCAGAATGTGGTAGAGAAATCTCACGATTCACAAATGTGCCCACAGCATCTTTTTGTGTTTCATTGCTGGAATTAAAGCATTTTGCTGCTCTGGGTTTTTGGCCATTGGTTGCGAGTCTGTATTTTTTATTTATACTTGTGAAGCTTCAATCCTCCTAAGTAGCTTACTTCGTATATCAAATGAAAATGAAAAATTCCCCTCCCCTCCTCTCCTTTTTTTTTTTTGAATAAGCAAGAAAAAAAATGCCTTATTTATTCTAACTACCAAGAACTTTAGAATGATAAGAGGAAGGTCCTGAACTACACTTCATTTTGTACGTGTTATTACATTGACTTCATTTTTAATTCGCTCTTAATTTATTTTCAAAAACTTTCATAAACATGCTGTAACCTAGTATTTCTGCCTACAACATATGTTATTATCATACTTCCTCCATTATTGTTATTATTTATTATTATACACATACATAGAGTGTGTCAAAAATATCTACTATTATTCGAGTATACAGCAAATCTGGATAATAAGCAAGATGAGAGGCTGTATTCTTTCCTCTTTTTTCTCAAACATTCACCAATATTTTGGAGAACCATAGTTAGCACTGGTGTGCGTATTTGAAAGCTCACCAAGAGATGTAACCTTGTTTACAAATTGTATAGTTGAGAGACATGCTAGAATGTGTGTACAAATCTGAGAAGACTTCAATGAGTTTGGGGAGACTTATTACTGCTATCTGATATAATTCCATCACAAGCTTTATCACATAAAATAGCTATTTCTGTTTTAGTTGGGAGGTCAAAGTACACAAATGGCTTTTGTGTTTTGTTGTAAATATACTTCTAGCTCTTTTAATCATGAAAAAATTATTATTAGCATGAAATGGGCCCGAATAGAGTGAAACAGATTTAGATGATTCTTAGAGATGATACCAACTACGTTACAGATTGAGGTGAGTGATTCTATTTGGGAAAGAACCTTGATGTGTTTTATTCCATCGTATTTGAGAAATCAAACTTGGCATCAGATGTTTGTGTAGCTTATGCGAATATACACACAAAAATATATTCAAGGTCAATCTCAATATAATTCTGAATATTCACTGATGCAGCAAG-AGTATATTCGTGGTATCAGTGCTTGGAATTTCAATCTGGAGGATCTGAAGAACCAAGCTGCTCTTGTATGTACTTATTGTCCATTCACTTAGAACTATTAATTTTAGGTAATAATGTCTGGTGTCTATTAAATTTATTTATCCTTTCTTTATGGTGTCTGTAGCTTCCAGATTTTGACGACATTCCAGATGCTGAAGATTCAAGTAACAGGGGGAAGCTAAGGGAGGGGAATGGTGACGTTGGTTCTGTAGTAGAAAGGCATAATCAGTCGAGTGTCCTATCTCACGAGGTATTCATATTAACCATGTTGAAGTTCTATATTACTATTCTTTATATACTATTCCTTCTCGATGGATTGATGCTGCTATAAGTCTTCTGAAACTCTTGTCATACTCAATTGCCTCCAGTCTGTTATCTCTTTGGATATTTTACAAGTTATTCAAATATGTCCTTCATTATCGGATATATAATTGTTGATATCTCCATTCAGGATGAGATGAATGGCAATCATGATTTGGATGGTTCTCTTGCTGCATTTCCTATTAAGCCTCTTCAAGCACTCAAGTAAGAATTTTGTCTTCCTCCTGGTTCTGCTTCTTCTATTGGCATTTGATAGTAAATCCATCATCACCAACTCAAATTATAGCCAGTTGGTTTCATTAACCAGATGTGTGTGTGTGTGTTTACATATATAATTATATTTTGCCATTTGGAATGTGGTATTCCTTGGAAGCACAACCCTGTTTGCATTATAGGTATGTCTTGCTGAGTCTGGTACATTAAGGAATGTGATGTTGAAATATTACAACCTTTCTTGATGCTCAAGTGCTGTGGGTATAATGATCCGAGGTATAGAATTAGCATAGTCGTCATGCTAGTAATTGAGTTAAATGTGTATAAAATTAGCCAGTAATTGAGTTAAAGGTACAGAATTAGCCAGTTGGTTTTATGATCAAGGTCTACAGATTTTACTATGTGAAAGATTTAAAAGTTTTGGTTCTCATTGAGTGAAATAATGTGGTCTAACCTTCATTTTGGCCGGAATTTCTTTCAATTAGCTCCTCCTCCCGTGATTGGCCTTGAAAGCATGCTTGCATCAGATTAACAGATGAATGTAGTAACCTGCTCACAAAGTAGAAAGTGAGGATAAGTTTGTTGAAGGACCCATTGTCGAAGACAAGGGAAAGTCAGTTAAGCAAAAAAGTTCCAGAAATAGTGGAATTGTTATTATTAATAATCCTATGTAAAGAAAAAGTGGAATTATTATATTTCCGACTTATTAGTTTTTGTTCCTTCTGAAATTTATGTGTATATAAAATGTTGTACCAATGCAGGGGATGTTTTGATATGTGTGAAGATGACATAACTGCTAGTAGTCCAAGTTGGGAAGATACTATGCAATCAGAGTCTAATCAGCAGAATGATATGCTATCACTAGCAAAAGTTG</genome_strand>
        <mrna_strand>ATTCTCTAAG..................................................................TCTTTTAAAGAAATGGTTGCTGCTTGCTTAGTAAAAGATCCAAAGAAGCGTCCGTCTTCTGAGAAGCTTTTGAAGCACCCTTTCTTTAAACAAGCACGAGGACATGATTATTTGGCACGTACAATCCTTGATGGCCTTCCACCTCTAGGTGATCGTTTTAGGATGCTTAAG........................................................................................................GCTAAAGAAGCAGATTATCTTTTACAGAACCAGGCAATGTATGAGGACAAGGACCATTTGTCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGAAGTATATTCGTGGTATCAGTGCTTGGAATTTCAATCTGGAGGATCTGAAGAACCAAGCTGCTCTT..................................................................................................CTTCCAGATTTTGACGACATTCCAGATGCTGAAGATTCAAGTACCAGGGGGAAGCTAAGGGAGGGAAATGGTGACGTTGGTTCTGTAGCAGAAAGGCATAATCAGTCGAGTGTCCTATCTCACGAG.........................................................................................................................................................................................................GATGAGATGAATGACAATCATGATTTGGATGGTTCACTTGCTGCATTTCCTATTAAGCCTCTTCAAGCACTCAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATGTTTTGATATGTGTGAAGATGACATAACTGCTAGTAGTCCAAGTTGGGAAGATACTATGCNATCAGAGTCTACTCAGCAGAATGATATGCTGTCACTAGCGAAAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E466870" ref_strand="+" ref_description="SGN-E466870 [cPRO-26-I2]">
      <seq>gtcttttaaagaaatggttgctgcttgcttagtaaaagatccaaagaagcgtccgtcttctgagaagcttttgaagcaccctttctttaaacaagcacgaggacatgattatttggcacgtacaatccttgatggccttccacctctaggtgatcgttttaggatgcttaaggctaaagaagcagattatcttttacagaaccaggcaatgtatgaggacaaggaccatttgtcacagcaagagtatattcgtggtatcagtgcttggaatttcaatctggaggatctgaagaaccaagctgctcttcttccagattttgacgacattccagatgctgaagattcaagtaccagggggaagctaagggagggaaatggtgacgttggttctgtagcagaaaggcataatcagtcgagtgtcctatctcacgaggatgagatgaatgacnatcatgatttggatgggtcacttgctgcatttcctattaagcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="+" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="55944" stop="58570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56244" g_stop="56415" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56416" i_stop="56519" i_length="104">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56520" g_stop="56585" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="238" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56586" i_stop="57715" i_length="1130">
            <donor d_prob="0.456" d_score="0.98"/>
            <acceptor a_prob="0.844" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57716" g_stop="57784" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="307" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57785" i_stop="57882" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57883" g_stop="58008" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="433" r_length="126" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58009" i_stop="58209" i_length="201">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58210" g_stop="58270" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="494" r_length="61" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="+" ref_id="SGN-E466870" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E466870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56244" e_stop="56415"/>
          <exon e_start="56520" e_stop="56585"/>
          <exon e_start="57716" e_stop="57784"/>
          <exon e_start="57883" e_stop="58008"/>
          <exon e_start="58210" e_stop="58270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTTTAAAGAAATGGTTGCTGCTTGCTTAGTAAAAGATCCAAAGAAGCGTCCGTCTTCTGAGAAGCTTTTGAAGCACCCTTTCTTTAAACAAGCACGAGGACATGATTATTTGGCACGTACAATCCTTGATGGCCTTCCACCTCTAGGTGATCGTTTTAGGATGCTTAAGGTCTTGTGCCCATCTTATACTGTGCTTTTCTGGCTGATAGCATTTCCCAATTATACTGAAATTACATGTGATTCTGATTTGTACAATTTGAACTGCTCTATCAGGCTAGAGAAGCAGATTATCTTTTACAGAACCAGGCAATGTATGAGGACAAGGACCATTTATCACAGGTGAAAACTGAATGTGCCTAAACTGCAGAATGTGGTAGAGAAATCTCACGATTCACAAATGTGCCCACAGCATCTTTTTGTGTTTCATTGCTGGAATTAAAGCATTTTGCTGCTCTGGGTTTTTGGCCATTGGTTGCGAGTCTGTATTTTTTATTTATACTTGTGAAGCTTCAATCCTCCTAAGTAGCTTACTTCGTATATCAAATGAAAATGAAAAATTCCCCTCCCCTCCTCTCCTTTTTTTTTTTTGAATAAGCAAGAAAAAAAATGCCTTATTTATTCTAACTACCAAGAACTTTAGAATGATAAGAGGAAGGTCCTGAACTACACTTCATTTTGTACGTGTTATTACATTGACTTCATTTTTAATTCGCTCTTAATTTATTTTCAAAAACTTTCATAAACATGCTGTAACCTAGTATTTCTGCCTACAACATATGTTATTATCATACTTCCTCCATTATTGTTATTATTTATTATTATACACATACATAGAGTGTGTCAAAAATATCTACTATTATTCGAGTATACAGCAAATCTGGATAATAAGCAAGATGAGAGGCTGTATTCTTTCCTCTTTTTTCTCAAACATTCACCAATATTTTGGAGAACCATAGTTAGCACTGGTGTGCGTATTTGAAAGCTCACCAAGAGATGTAACCTTGTTTACAAATTGTATAGTTGAGAGACATGCTAGAATGTGTGTACAAATCTGAGAAGACTTCAATGAGTTTGGGGAGACTTATTACTGCTATCTGATATAATTCCATCACAAGCTTTATCACATAAAATAGCTATTTCTGTTTTAGTTGGGAGGTCAAAGTACACAAATGGCTTTTGTGTTTTGTTGTAAATATACTTCTAGCTCTTTTAATCATGAAAAAATTATTATTAGCATGAAATGGGCCCGAATAGAGTGAAACAGATTTAGATGATTCTTAGAGATGATACCAACTACGTTACAGATTGAGGTGAGTGATTCTATTTGGGAAAGAACCTTGATGTGTTTTATTCCATCGTATTTGAGAAATCAAACTTGGCATCAGATGTTTGTGTAGCTTATGCGAATATACACACAAAAATATATTCAAGGTCAATCTCAATATAATTCTGAATATTCACTGATGCAGCAAGAGTATATTCGTGGTATCAGTGCTTGGAATTTCAATCTGGAGGATCTGAAGAACCAAGCTGCTCTTGTATGTACTTATTGTCCATTCACTTAGAACTATTAATTTTAGGTAATAATGTCTGGTGTCTATTAAATTTATTTATCCTTTCTTTATGGTGTCTGTAGCTTCCAGATTTTGACGACATTCCAGATGCTGAAGATTCAAGTAACAGGGGGAAGCTAAGGGAGGGGAATGGTGACGTTGGTTCTGTAGTAGAAAGGCATAATCAGTCGAGTGTCCTATCTCACGAGGTATTCATATTAACCATGTTGAAGTTCTATATTACTATTCTTTATATACTATTCCTTCTCGATGGATTGATGCTGCTATAAGTCTTCTGAAACTCTTGTCATACTCAATTGCCTCCAGTCTGTTATCTCTTTGGATATTTTACAAGTTATTCAAATATGTCCTTCATTATCGGATATATAATTGTTGATATCTCCATTCAGGATGAGATGAATGGCAATCATGATTTGGATGGTTCTCTTGCTGCATTTCCTATTAAGCCTC</genome_strand>
        <mrna_strand>GTCTTTTAAAGAAATGGTTGCTGCTTGCTTAGTAAAAGATCCAAAGAAGCGTCCGTCTTCTGAGAAGCTTTTGAAGCACCCTTTCTTTAAACAAGCACGAGGACATGATTATTTGGCACGTACAATCCTTGATGGCCTTCCACCTCTAGGTGATCGTTTTAGGATGCTTAAG........................................................................................................GCTAAAGAAGCAGATTATCTTTTACAGAACCAGGCAATGTATGAGGACAAGGACCATTTGTCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGAGTATATTCGTGGTATCAGTGCTTGGAATTTCAATCTGGAGGATCTGAAGAACCAAGCTGCTCTT..................................................................................................CTTCCAGATTTTGACGACATTCCAGATGCTGAAGATTCAAGTACCAGGGGGAAGCTAAGGGAGGGAAATGGTGACGTTGGTTCTGTAGCAGAAAGGCATAATCAGTCGAGTGTCCTATCTCACGAG.........................................................................................................................................................................................................GATGAGATGAATGACNATCATGATTTGGATGGGTCACTTGCTGCATTTCCTATTAAGCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E466859" ref_strand="+" ref_description="SGN-E466859 [cPRO-26-G2]">
      <seq>gtcttttaaagaaatggttgctgcttgcttagtaaaagatccaaagaagcgtccgtcttctgagaagcttttgaagcaccctttctttaaacaagcacgaggacatgattatttggcacgtacaatccttgatggccttccacctctaggtgatcgttttaggatgcttaaggctaaagaagcagattatcttttacagaaccaggcaatgtatgaggacaaggaccatttgtcacagcaagagtatattcgtggtatcagtgcttggaatttcaatctggaggatctgaagaaccaagctgctcttcttccagattttgacgacattccagatgctgaagattcaagtaccagggggaagctaagggagggaaatggtgacgttggttctgtagcagaaacgcataatcagtcgagtgtcctatctcacgaggatgagatgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="+" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="55944" stop="58312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56244" g_stop="56415" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56416" i_stop="56519" i_length="104">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56520" g_stop="56585" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="238" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56586" i_stop="57715" i_length="1130">
            <donor d_prob="0.456" d_score="0.98"/>
            <acceptor a_prob="0.844" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57716" g_stop="57784" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="307" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57785" i_stop="57882" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57883" g_stop="58008" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="433" r_length="126" r_score="0.968"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58009" i_stop="58209" i_length="201">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58210" g_stop="58221" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="445" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="+" ref_id="SGN-E466859" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E466859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56244" e_stop="56415"/>
          <exon e_start="56520" e_stop="56585"/>
          <exon e_start="57716" e_stop="57784"/>
          <exon e_start="57883" e_stop="58008"/>
          <exon e_start="58210" e_stop="58221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTTTAAAGAAATGGTTGCTGCTTGCTTAGTAAAAGATCCAAAGAAGCGTCCGTCTTCTGAGAAGCTTTTGAAGCACCCTTTCTTTAAACAAGCACGAGGACATGATTATTTGGCACGTACAATCCTTGATGGCCTTCCACCTCTAGGTGATCGTTTTAGGATGCTTAAGGTCTTGTGCCCATCTTATACTGTGCTTTTCTGGCTGATAGCATTTCCCAATTATACTGAAATTACATGTGATTCTGATTTGTACAATTTGAACTGCTCTATCAGGCTAGAGAAGCAGATTATCTTTTACAGAACCAGGCAATGTATGAGGACAAGGACCATTTATCACAGGTGAAAACTGAATGTGCCTAAACTGCAGAATGTGGTAGAGAAATCTCACGATTCACAAATGTGCCCACAGCATCTTTTTGTGTTTCATTGCTGGAATTAAAGCATTTTGCTGCTCTGGGTTTTTGGCCATTGGTTGCGAGTCTGTATTTTTTATTTATACTTGTGAAGCTTCAATCCTCCTAAGTAGCTTACTTCGTATATCAAATGAAAATGAAAAATTCCCCTCCCCTCCTCTCCTTTTTTTTTTTTGAATAAGCAAGAAAAAAAATGCCTTATTTATTCTAACTACCAAGAACTTTAGAATGATAAGAGGAAGGTCCTGAACTACACTTCATTTTGTACGTGTTATTACATTGACTTCATTTTTAATTCGCTCTTAATTTATTTTCAAAAACTTTCATAAACATGCTGTAACCTAGTATTTCTGCCTACAACATATGTTATTATCATACTTCCTCCATTATTGTTATTATTTATTATTATACACATACATAGAGTGTGTCAAAAATATCTACTATTATTCGAGTATACAGCAAATCTGGATAATAAGCAAGATGAGAGGCTGTATTCTTTCCTCTTTTTTCTCAAACATTCACCAATATTTTGGAGAACCATAGTTAGCACTGGTGTGCGTATTTGAAAGCTCACCAAGAGATGTAACCTTGTTTACAAATTGTATAGTTGAGAGACATGCTAGAATGTGTGTACAAATCTGAGAAGACTTCAATGAGTTTGGGGAGACTTATTACTGCTATCTGATATAATTCCATCACAAGCTTTATCACATAAAATAGCTATTTCTGTTTTAGTTGGGAGGTCAAAGTACACAAATGGCTTTTGTGTTTTGTTGTAAATATACTTCTAGCTCTTTTAATCATGAAAAAATTATTATTAGCATGAAATGGGCCCGAATAGAGTGAAACAGATTTAGATGATTCTTAGAGATGATACCAACTACGTTACAGATTGAGGTGAGTGATTCTATTTGGGAAAGAACCTTGATGTGTTTTATTCCATCGTATTTGAGAAATCAAACTTGGCATCAGATGTTTGTGTAGCTTATGCGAATATACACACAAAAATATATTCAAGGTCAATCTCAATATAATTCTGAATATTCACTGATGCAGCAAGAGTATATTCGTGGTATCAGTGCTTGGAATTTCAATCTGGAGGATCTGAAGAACCAAGCTGCTCTTGTATGTACTTATTGTCCATTCACTTAGAACTATTAATTTTAGGTAATAATGTCTGGTGTCTATTAAATTTATTTATCCTTTCTTTATGGTGTCTGTAGCTTCCAGATTTTGACGACATTCCAGATGCTGAAGATTCAAGTAACAGGGGGAAGCTAAGGGAGGGGAATGGTGACGTTGGTTCTGTAGTAGAAAGGCATAATCAGTCGAGTGTCCTATCTCACGAGGTATTCATATTAACCATGTTGAAGTTCTATATTACTATTCTTTATATACTATTCCTTCTCGATGGATTGATGCTGCTATAAGTCTTCTGAAACTCTTGTCATACTCAATTGCCTCCAGTCTGTTATCTCTTTGGATATTTTACAAGTTATTCAAATATGTCCTTCATTATCGGATATATAATTGTTGATATCTCCATTCAGGATGAGATGAAT</genome_strand>
        <mrna_strand>GTCTTTTAAAGAAATGGTTGCTGCTTGCTTAGTAAAAGATCCAAAGAAGCGTCCGTCTTCTGAGAAGCTTTTGAAGCACCCTTTCTTTAAACAAGCACGAGGACATGATTATTTGGCACGTACAATCCTTGATGGCCTTCCACCTCTAGGTGATCGTTTTAGGATGCTTAAG........................................................................................................GCTAAAGAAGCAGATTATCTTTTACAGAACCAGGCAATGTATGAGGACAAGGACCATTTGTCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGAGTATATTCGTGGTATCAGTGCTTGGAATTTCAATCTGGAGGATCTGAAGAACCAAGCTGCTCTT..................................................................................................CTTCCAGATTTTGACGACATTCCAGATGCTGAAGATTCAAGTACCAGGGGGAAGCTAAGGGAGGGAAATGGTGACGTTGGTTCTGTAGCAGAAACGCATAATCAGTCGAGTGTCCTATCTCACGAG.........................................................................................................................................................................................................GATGAGATGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E338512" ref_strand="+" ref_description="SGN-E338512 [cTOE-15-J8]">
      <seq>attatcttttaccagaaccaggcaatgtatgaggacaaggaccatttatcacagcaagagtatattcgtggtatcagtgcttggaatttcaatctggaggatctgaagaaccaagctgctcttcttccagattttgacgacattccagatgctgaagattcaagtaacagggggaagctaagggaggggaatggtgacgttggttctgtagtagaaaggcataatcagtcgagtgtcctatctcacgaggatgagatgaatggcaatcatgatttggatggttctcttgctgcatttcctattaagcctcttcaagcactcaagggatgttttgatatgtgtgaagatgacataactgctagtagtccaagttgggaagatactatgcaatcagagtctaatcagcagaatgatatgctatcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="+" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="56233" stop="59455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56533" g_stop="56585" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56586" i_stop="57715" i_length="1130">
            <donor d_prob="0.456" d_score="0.96"/>
            <acceptor a_prob="0.844" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57716" g_stop="57784" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="123" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57785" i_stop="57882" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57883" g_stop="58008" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="249" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58009" i_stop="58209" i_length="201">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58210" g_stop="58283" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="323" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58284" i_stop="59053" i_length="770">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59054" g_stop="59155" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="425" r_length="102" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="+" ref_id="SGN-E338512" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56533" e_stop="56585"/>
          <exon e_start="57716" e_stop="57784"/>
          <exon e_start="57883" e_stop="58008"/>
          <exon e_start="58210" e_stop="58283"/>
          <exon e_start="59054" e_stop="59155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATCTTTTA-CAGAACCAGGCAATGTATGAGGACAAGGACCATTTATCACAGGTGAAAACTGAATGTGCCTAAACTGCAGAATGTGGTAGAGAAATCTCACGATTCACAAATGTGCCCACAGCATCTTTTTGTGTTTCATTGCTGGAATTAAAGCATTTTGCTGCTCTGGGTTTTTGGCCATTGGTTGCGAGTCTGTATTTTTTATTTATACTTGTGAAGCTTCAATCCTCCTAAGTAGCTTACTTCGTATATCAAATGAAAATGAAAAATTCCCCTCCCCTCCTCTCCTTTTTTTTTTTTGAATAAGCAAGAAAAAAAATGCCTTATTTATTCTAACTACCAAGAACTTTAGAATGATAAGAGGAAGGTCCTGAACTACACTTCATTTTGTACGTGTTATTACATTGACTTCATTTTTAATTCGCTCTTAATTTATTTTCAAAAACTTTCATAAACATGCTGTAACCTAGTATTTCTGCCTACAACATATGTTATTATCATACTTCCTCCATTATTGTTATTATTTATTATTATACACATACATAGAGTGTGTCAAAAATATCTACTATTATTCGAGTATACAGCAAATCTGGATAATAAGCAAGATGAGAGGCTGTATTCTTTCCTCTTTTTTCTCAAACATTCACCAATATTTTGGAGAACCATAGTTAGCACTGGTGTGCGTATTTGAAAGCTCACCAAGAGATGTAACCTTGTTTACAAATTGTATAGTTGAGAGACATGCTAGAATGTGTGTACAAATCTGAGAAGACTTCAATGAGTTTGGGGAGACTTATTACTGCTATCTGATATAATTCCATCACAAGCTTTATCACATAAAATAGCTATTTCTGTTTTAGTTGGGAGGTCAAAGTACACAAATGGCTTTTGTGTTTTGTTGTAAATATACTTCTAGCTCTTTTAATCATGAAAAAATTATTATTAGCATGAAATGGGCCCGAATAGAGTGAAACAGATTTAGATGATTCTTAGAGATGATACCAACTACGTTACAGATTGAGGTGAGTGATTCTATTTGGGAAAGAACCTTGATGTGTTTTATTCCATCGTATTTGAGAAATCAAACTTGGCATCAGATGTTTGTGTAGCTTATGCGAATATACACACAAAAATATATTCAAGGTCAATCTCAATATAATTCTGAATATTCACTGATGCAGCAAGAGTATATTCGTGGTATCAGTGCTTGGAATTTCAATCTGGAGGATCTGAAGAACCAAGCTGCTCTTGTATGTACTTATTGTCCATTCACTTAGAACTATTAATTTTAGGTAATAATGTCTGGTGTCTATTAAATTTATTTATCCTTTCTTTATGGTGTCTGTAGCTTCCAGATTTTGACGACATTCCAGATGCTGAAGATTCAAGTAACAGGGGGAAGCTAAGGGAGGGGAATGGTGACGTTGGTTCTGTAGTAGAAAGGCATAATCAGTCGAGTGTCCTATCTCACGAGGTATTCATATTAACCATGTTGAAGTTCTATATTACTATTCTTTATATACTATTCCTTCTCGATGGATTGATGCTGCTATAAGTCTTCTGAAACTCTTGTCATACTCAATTGCCTCCAGTCTGTTATCTCTTTGGATATTTTACAAGTTATTCAAATATGTCCTTCATTATCGGATATATAATTGTTGATATCTCCATTCAGGATGAGATGAATGGCAATCATGATTTGGATGGTTCTCTTGCTGCATTTCCTATTAAGCCTCTTCAAGCACTCAAGTAAGAATTTTGTCTTCCTCCTGGTTCTGCTTCTTCTATTGGCATTTGATAGTAAATCCATCATCACCAACTCAAATTATAGCCAGTTGGTTTCATTAACCAGATGTGTGTGTGTGTGTTTACATATATAATTATATTTTGCCATTTGGAATGTGGTATTCCTTGGAAGCACAACCCTGTTTGCATTATAGGTATGTCTTGCTGAGTCTGGTACATTAAGGAATGTGATGTTGAAATATTACAACCTTTCTTGATGCTCAAGTGCTGTGGGTATAATGATCCGAGGTATAGAATTAGCATAGTCGTCATGCTAGTAATTGAGTTAAATGTGTATAAAATTAGCCAGTAATTGAGTTAAAGGTACAGAATTAGCCAGTTGGTTTTATGATCAAGGTCTACAGATTTTACTATGTGAAAGATTTAAAAGTTTTGGTTCTCATTGAGTGAAATAATGTGGTCTAACCTTCATTTTGGCCGGAATTTCTTTCAATTAGCTCCTCCTCCCGTGATTGGCCTTGAAAGCATGCTTGCATCAGATTAACAGATGAATGTAGTAACCTGCTCACAAAGTAGAAAGTGAGGATAAGTTTGTTGAAGGACCCATTGTCGAAGACAAGGGAAAGTCAGTTAAGCAAAAAAGTTCCAGAAATAGTGGAATTGTTATTATTAATAATCCTATGTAAAGAAAAAGTGGAATTATTATATTTCCGACTTATTAGTTTTTGTTCCTTCTGAAATTTATGTGTATATAAAATGTTGTACCAATGCAGGGGATGTTTTGATATGTGTGAAGATGACATAACTGCTAGTAGTCCAAGTTGGGAAGATACTATGCAATCAGAGTCTAATCAGCAGAATGATATGCTATCACT</genome_strand>
        <mrna_strand>ATTATCTTTTACCAGAACCAGGCAATGTATGAGGACAAGGACCATTTATCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGAGTATATTCGTGGTATCAGTGCTTGGAATTTCAATCTGGAGGATCTGAAGAACCAAGCTGCTCTT..................................................................................................CTTCCAGATTTTGACGACATTCCAGATGCTGAAGATTCAAGTAACAGGGGGAAGCTAAGGGAGGGGAATGGTGACGTTGGTTCTGTAGTAGAAAGGCATAATCAGTCGAGTGTCCTATCTCACGAG.........................................................................................................................................................................................................GATGAGATGAATGGCAATCATGATTTGGATGGTTCTCTTGCTGCATTTCCTATTAAGCCTCTTCAAGCACTCAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATGTTTTGATATGTGTGAAGATGACATAACTGCTAGTAGTCCAAGTTGGGAAGATACTATGCAATCAGAGTCTAATCAGCAGAATGATATGCTATCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E709049" ref_strand="+" ref_description="SGN-E709049 [FA42CB11]">
      <seq>cggttaccatttatcacagcaagagtatattcgtggtatcagtgcttggaatttcaatctggaggatctgaagaaccaagctgctcttcttccagattttgacgacattccagatgctgaagattcaagtaacagggggaagctaagggaggggaatggtgacgttggttctgtagtagaaaggcataatcagtcgagtgtcctatctcacgaggatgagatgaatggcaatcatgatttggatggttctcttgctgcatttcctattaagcctcttcaagcactcaagggatgttttgatatgtgtgaagatgacataactgctagtagtccaagttgggaagatactatgcaatcagagtctaatcagcagaatgatatgctatcactagcaaaagttgaggaccaagatggtggaaaagatgatggtgagaatctgcgacagagtagctccttgccacgttctgttattcctgggcataaaaagttttttagtggttcactgctacaggataacgctctttcacccaaaaaagttgttactgatggagagagggaatatcaacatccaaagtaccagtctgagcgaaactatagcggcccactgcagtatcgacataaaaaagatttaggagaagattcatcagaaggagctattgtccaacgcaagggacgttttcaagtcacatcagcagatctaagtcccaaggaacctacaagctatttccttaacccagttcagggaggttctactattgcaattaatctaggtctagcagctgcttcactactttccacattgcaatgcattctacagcaaaatactttgcaaagggagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="+" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="57413" stop="62131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57716" g_stop="57784" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="88" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57785" i_stop="57882" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57883" g_stop="58008" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="214" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58009" i_stop="58209" i_length="201">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58210" g_stop="58283" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="288" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58284" i_stop="59053" i_length="770">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59054" g_stop="59320" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="555" r_length="267" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59321" i_stop="59920" i_length="600">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59921" g_stop="59997" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="632" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="59998" i_stop="60357" i_length="360">
            <donor d_prob="0.611" d_score="1.00"/>
            <acceptor a_prob="0.798" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="60358" g_stop="60434" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="709" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="60435" i_stop="61704" i_length="1270">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="61705" g_stop="61830" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="710" r_stop="835" r_length="126" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="+" ref_id="SGN-E709049" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>816</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709049" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57716" e_stop="57784"/>
          <exon e_start="57883" e_stop="58008"/>
          <exon e_start="58210" e_stop="58283"/>
          <exon e_start="59054" e_stop="59320"/>
          <exon e_start="59921" e_stop="59997"/>
          <exon e_start="60358" e_stop="60434"/>
          <exon e_start="61705" e_stop="61830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAGTATATTCGTGGTATCAGTGCTTGGAATTTCAATCTGGAGGATCTGAAGAACCAAGCTGCTCTTGTATGTACTTATTGTCCATTCACTTAGAACTATTAATTTTAGGTAATAATGTCTGGTGTCTATTAAATTTATTTATCCTTTCTTTATGGTGTCTGTAGCTTCCAGATTTTGACGACATTCCAGATGCTGAAGATTCAAGTAACAGGGGGAAGCTAAGGGAGGGGAATGGTGACGTTGGTTCTGTAGTAGAAAGGCATAATCAGTCGAGTGTCCTATCTCACGAGGTATTCATATTAACCATGTTGAAGTTCTATATTACTATTCTTTATATACTATTCCTTCTCGATGGATTGATGCTGCTATAAGTCTTCTGAAACTCTTGTCATACTCAATTGCCTCCAGTCTGTTATCTCTTTGGATATTTTACAAGTTATTCAAATATGTCCTTCATTATCGGATATATAATTGTTGATATCTCCATTCAGGATGAGATGAATGGCAATCATGATTTGGATGGTTCTCTTGCTGCATTTCCTATTAAGCCTCTTCAAGCACTCAAGTAAGAATTTTGTCTTCCTCCTGGTTCTGCTTCTTCTATTGGCATTTGATAGTAAATCCATCATCACCAACTCAAATTATAGCCAGTTGGTTTCATTAACCAGATGTGTGTGTGTGTGTTTACATATATAATTATATTTTGCCATTTGGAATGTGGTATTCCTTGGAAGCACAACCCTGTTTGCATTATAGGTATGTCTTGCTGAGTCTGGTACATTAAGGAATGTGATGTTGAAATATTACAACCTTTCTTGATGCTCAAGTGCTGTGGGTATAATGATCCGAGGTATAGAATTAGCATAGTCGTCATGCTAGTAATTGAGTTAAATGTGTATAAAATTAGCCAGTAATTGAGTTAAAGGTACAGAATTAGCCAGTTGGTTTTATGATCAAGGTCTACAGATTTTACTATGTGAAAGATTTAAAAGTTTTGGTTCTCATTGAGTGAAATAATGTGGTCTAACCTTCATTTTGGCCGGAATTTCTTTCAATTAGCTCCTCCTCCCGTGATTGGCCTTGAAAGCATGCTTGCATCAGATTAACAGATGAATGTAGTAACCTGCTCACAAAGTAGAAAGTGAGGATAAGTTTGTTGAAGGACCCATTGTCGAAGACAAGGGAAAGTCAGTTAAGCAAAAAAGTTCCAGAAATAGTGGAATTGTTATTATTAATAATCCTATGTAAAGAAAAAGTGGAATTATTATATTTCCGACTTATTAGTTTTTGTTCCTTCTGAAATTTATGTGTATATAAAATGTTGTACCAATGCAGGGGATGTTTTGATATGTGTGAAGATGACATAACTGCTAGTAGTCCAAGTTGGGAAGATACTATGCAATCAGAGTCTAATCAGCAGAATGATATGCTATCACTAGCAAAAGTTGAGGACCAAGATGGTGGAAAAGATGATGGTGAGAATCTGCGACAGAGTAGCTCCTTGCCACGTTCTGTTATTCCTGGGCATAAAAAGTTTTTTAGTGGTTCACTGCTACAGGATAACGCTCTTTCACCCAAAAAAGTTGTTACTGATGGAGAGAGGTATATTTCTTTGTTGTGTTCACAATTGAACTGCTAGAGTTGGTCAAGATTTTCTGAAAACAAAAAATAGTTGCAATATGGATGAAGATAGCTATTATAGGATGGTAATACTACTAATTTGCCAGTAGATCATGGTATTCTCTCAGAAAGAAAGGAAGGGTAGTGAAAATGTGCAACCCCAAGTTAGTCGATGCTTGTTCCTGAAGTAAATGTTATTCAGCTGAGTTTTTTAAAAAAAAACGTCTGCGAAGATTACTAACCAGGAAGTAGTGGGATTCTTGTGCTTTATGAGTTCTGAATATTTTGAGTGTTCTAATTGTGTAATGCTGACTGAATTGTTAGAGTACTTAGGTGCTTCAAGTTCCTGCCAATTTTACTTATAATCTTGACATCAGTGATGATAGTTTTTCTAGAATGCACATTATCTACGACCTACATGGTTAGAGTTTTGATGTTAGCTGCATGTAGAACTTTTTATTGAAGTCCTTGTCATCTTAAAATCACATGCAATGATTGGCAATGGTTCAGTCTACATTTTCCATATTTCAAGCAGCAAACTGTTGTTTCAAGCTGTGTTACATTGTTTAGTTCTATATGTAGGGAATATCAACATCCAAAGTACCAGTCTGAGCGAAACTATAGCGGCCCACTGCAGTATCGACATAAAAAAGATTTAGGTAATCCAGTTTCTGTCAATGAATTTTTTGTTTGATGACAAGAGAAATCCGCAGCCCCTTTGGGTGCGCACAGGTGAAAACCCTCGCTCCTATGCAATAACTCGCAAACCACATAGGAGAGGTAACCCGCACCAGGCTCGACCCAGAAGGCAAACCCGGGGTTTCGAACTTGAGACCTCCAACATGAAAGTCCCAAGCTCAAACCATTGGGCCATCCCGAAGGGTTTTCTGACAATGAATTTAGACTGGGTGATGTTTAAAAAACACCAATTCTTCCAGATAATTATGAGTTCTGATTTTCTAGATAACTTAGTTTTGTTACCTTTCCTTCTGAGTCTCTGGATAATATGCTTGTCGCAGGAGAAGATTCATCAGAAGGAGCTATTGTCCAACGCAAGGGACGTTTTCAAGTCACATCAGCAGATCTAAGTCCCAAGGTATACATACTGTGCCTTCTTGCATTGATTGTCAGGTCAGCTATAATAATGCATTATGAAGGGGATTTTTCTTCAGTGACCAGATTTGGATTTTTCTTCAGTGACCAGATTCCGTCTCTAATACATGTGAATTAACACCAAATCATTCGCAGCATGAAAAAAAAACACCAAATCACTTGCAAATTAAACAGAGACACACAAATTCATTAGTGCCATACAGACATTGGTTTATTCAAAGATATGAACAAGAGTGGAAAAGGTTGCGTTAGGGGGTAAACTGTGGATAACTTTTAAACTGTTTTTTTTATGACCATGCTTTGTTTTCTTGTTACAAGCTTTCTGCATACCTGGGTAAGTGATTTTTACCTGAGCGGCAGCCCGTTTAATATAAGTGAAGCTGAATATTTGCCGCTTTGTTGATCACCAAGATAAAAAATTTAGCATTTAGTGGCAATATTTCCTTCCACATACTTGAGTTTATAGTGCATTTAGAGCGAATATTTGTTCATGATTTATCCATTTAAATCTTTTTTTTCTTTAAAAAAAAAGAAAAGAAAAATCCTTCCATGTTGGTTTGGGAGAAATTTGCTCTTTGGGTTTTGTTGGATTCTGAGCTTTTCTATTAAAGATCTTTAATTAAGAGGAGTTAACACTGTTTGCTTTGTGATGTGAGCATAAAATGATTTGTAAGGAAATTTGCTTTTTAGTTCTTTCAGCTGCTGTCTCCTTTCTATTTCCTTAATAAAGTTGCATTCTTCATGGGTTTCTTTAGTCTCACTTTCAGCATTGACTTCCCTGTTTGGTGTTTGTGAGAAATATAGTTCGCCGGTGAAAATCCTACCGGTGGCGCGTGACTGCGCGTGTAGCACTGTTTTCCGGTGGGGATGACTGGGCTTTGCTCGTCGGGAAATTCCGCAGCTAGTGGTGGTGTCAATTTTATGAAAACAATGAGGGAAAATAATAATTATCAGGACAGCAACTAGGTTACCAGATTTTTATTTTTTTTTGATTTCTTTTTTCTCACAATTTCTCTGATACCATGTGAGAAATATTGGAGAAAATATTATTGAATTGCGTATCTAAATTGTTGCATGAAGACCCTATTTATAGATACTACGTTGGAAACCTTTTCCAACTAGAATTCCTATTCTTATTCCTATTCTAATTCTTATTCTTATTCTAACAGTGTTCTCATGGTAAGTATCAAACTTTGCAATCTCTCTTTAGGTGATGGCTTCGTAACCATTGCCCTTTTTTTTCACTTGTTCAGGAACCTACAAGCTATTTCCTTAACCCAGTTCAGGGAGGTTCTACTAGTGCAATTAATCTAGGTCTAGCAGCTGCTTCACTACTTCCAACATTGCAATGCATTCTACAGCAGAATACTTTGCAAAGG</genome_strand>
        <mrna_strand>CAAGAGTATATTCGTGGTATCAGTGCTTGGAATTTCAATCTGGAGGATCTGAAGAACCAAGCTGCTCTT..................................................................................................CTTCCAGATTTTGACGACATTCCAGATGCTGAAGATTCAAGTAACAGGGGGAAGCTAAGGGAGGGGAATGGTGACGTTGGTTCTGTAGTAGAAAGGCATAATCAGTCGAGTGTCCTATCTCACGAG.........................................................................................................................................................................................................GATGAGATGAATGGCAATCATGATTTGGATGGTTCTCTTGCTGCATTTCCTATTAAGCCTCTTCAAGCACTCAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATGTTTTGATATGTGTGAAGATGACATAACTGCTAGTAGTCCAAGTTGGGAAGATACTATGCAATCAGAGTCTAATCAGCAGAATGATATGCTATCACTAGCAAAAGTTGAGGACCAAGATGGTGGAAAAGATGATGGTGAGAATCTGCGACAGAGTAGCTCCTTGCCACGTTCTGTTATTCCTGGGCATAAAAAGTTTTTTAGTGGTTCACTGCTACAGGATAACGCTCTTTCACCCAAAAAAGTTGTTACTGATGGAGAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATATCAACATCCAAAGTACCAGTCTGAGCGAAACTATAGCGGCCCACTGCAGTATCGACATAAAAAAGATTTAG........................................................................................................................................................................................................................................................................................................................................................................GAGAAGATTCATCAGAAGGAGCTATTGTCCAACGCAAGGGACGTTTTCAAGTCACATCAGCAGATCTAAGTCCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCTACAAGCTATTTCCTTAACCCAGTTCAGGGAGGTTCTACTATTGCAATTAATCTAGGTCTAGCAGCTGCTTCACTACTTTCCACATTGCAATGCATTCTACAGCAAAATACTTTGCAAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E407710" ref_strand="+" ref_description="SGN-E407710 [PPI-8-E4]">
      <seq>gtggtatcagtgcttggaatttcaatctggaggatctgaagaaccaagctgctcttcttccagattttgacgacattccagatgctgaagattcaagtaccagggggaagctaagggagggaaatggtgacgttggttctgtagcagaaaggcataatcagtcgagtgtcctatctcacgaggatgagatgaatgacaatcatgatttggatggttcacttgctgcatttcctattaagcctcttcaagcactcaagggatgttttgatatgtgtgaagatgacataactgctagtagtccaagttgggaagatactatgcaatcagagtctaatcagcagaatgatatgctgtcactagcgaaaattgaggaccaagaaggtggaaaagatgatggtgagaatctgcgacagagtagctccttgccacgttctgttattcctgggcataaaaagttttttagtggttcactgctacaggataacgctctttcacccaaaaaagttgttactgatggagagagggaatatcaacatccgaagtaccagtctgagcgaaactatagcggcccattgcagtaccgacataaaaaagatttaggagaagattcatcagaaggagctgttgtccaacgcnagggacgttttcaagtcacatcagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="+" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="57429" stop="60719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57729" g_stop="57784" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57785" i_stop="57882" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57883" g_stop="58008" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="182" r_length="126" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58009" i_stop="58209" i_length="201">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58210" g_stop="58283" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="256" r_length="74" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58284" i_stop="59053" i_length="770">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59054" g_stop="59320" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="523" r_length="267" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59321" i_stop="59920" i_length="600">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59921" g_stop="59997" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="600" r_length="77" r_score="0.961"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="59998" i_stop="60357" i_length="360">
            <donor d_prob="0.611" d_score="0.96"/>
            <acceptor a_prob="0.798" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="60358" g_stop="60419" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="662" r_length="62" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="+" ref_id="SGN-E407710" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E407710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57729" e_stop="57784"/>
          <exon e_start="57883" e_stop="58008"/>
          <exon e_start="58210" e_stop="58283"/>
          <exon e_start="59054" e_stop="59320"/>
          <exon e_start="59921" e_stop="59997"/>
          <exon e_start="60358" e_stop="60419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGTATCAGTGCTTGGAATTTCAATCTGGAGGATCTGAAGAACCAAGCTGCTCTTGTATGTACTTATTGTCCATTCACTTAGAACTATTAATTTTAGGTAATAATGTCTGGTGTCTATTAAATTTATTTATCCTTTCTTTATGGTGTCTGTAGCTTCCAGATTTTGACGACATTCCAGATGCTGAAGATTCAAGTAACAGGGGGAAGCTAAGGGAGGGGAATGGTGACGTTGGTTCTGTAGTAGAAAGGCATAATCAGTCGAGTGTCCTATCTCACGAGGTATTCATATTAACCATGTTGAAGTTCTATATTACTATTCTTTATATACTATTCCTTCTCGATGGATTGATGCTGCTATAAGTCTTCTGAAACTCTTGTCATACTCAATTGCCTCCAGTCTGTTATCTCTTTGGATATTTTACAAGTTATTCAAATATGTCCTTCATTATCGGATATATAATTGTTGATATCTCCATTCAGGATGAGATGAATGGCAATCATGATTTGGATGGTTCTCTTGCTGCATTTCCTATTAAGCCTCTTCAAGCACTCAAGTAAGAATTTTGTCTTCCTCCTGGTTCTGCTTCTTCTATTGGCATTTGATAGTAAATCCATCATCACCAACTCAAATTATAGCCAGTTGGTTTCATTAACCAGATGTGTGTGTGTGTGTTTACATATATAATTATATTTTGCCATTTGGAATGTGGTATTCCTTGGAAGCACAACCCTGTTTGCATTATAGGTATGTCTTGCTGAGTCTGGTACATTAAGGAATGTGATGTTGAAATATTACAACCTTTCTTGATGCTCAAGTGCTGTGGGTATAATGATCCGAGGTATAGAATTAGCATAGTCGTCATGCTAGTAATTGAGTTAAATGTGTATAAAATTAGCCAGTAATTGAGTTAAAGGTACAGAATTAGCCAGTTGGTTTTATGATCAAGGTCTACAGATTTTACTATGTGAAAGATTTAAAAGTTTTGGTTCTCATTGAGTGAAATAATGTGGTCTAACCTTCATTTTGGCCGGAATTTCTTTCAATTAGCTCCTCCTCCCGTGATTGGCCTTGAAAGCATGCTTGCATCAGATTAACAGATGAATGTAGTAACCTGCTCACAAAGTAGAAAGTGAGGATAAGTTTGTTGAAGGACCCATTGTCGAAGACAAGGGAAAGTCAGTTAAGCAAAAAAGTTCCAGAAATAGTGGAATTGTTATTATTAATAATCCTATGTAAAGAAAAAGTGGAATTATTATATTTCCGACTTATTAGTTTTTGTTCCTTCTGAAATTTATGTGTATATAAAATGTTGTACCAATGCAGGGGATGTTTTGATATGTGTGAAGATGACATAACTGCTAGTAGTCCAAGTTGGGAAGATACTATGCAATCAGAGTCTAATCAGCAGAATGATATGCTATCACTAGCAAAAGTTGAGGACCAAGATGGTGGAAAAGATGATGGTGAGAATCTGCGACAGAGTAGCTCCTTGCCACGTTCTGTTATTCCTGGGCATAAAAAGTTTTTTAGTGGTTCACTGCTACAGGATAACGCTCTTTCACCCAAAAAAGTTGTTACTGATGGAGAGAGGTATATTTCTTTGTTGTGTTCACAATTGAACTGCTAGAGTTGGTCAAGATTTTCTGAAAACAAAAAATAGTTGCAATATGGATGAAGATAGCTATTATAGGATGGTAATACTACTAATTTGCCAGTAGATCATGGTATTCTCTCAGAAAGAAAGGAAGGGTAGTGAAAATGTGCAACCCCAAGTTAGTCGATGCTTGTTCCTGAAGTAAATGTTATTCAGCTGAGTTTTTTAAAAAAAAACGTCTGCGAAGATTACTAACCAGGAAGTAGTGGGATTCTTGTGCTTTATGAGTTCTGAATATTTTGAGTGTTCTAATTGTGTAATGCTGACTGAATTGTTAGAGTACTTAGGTGCTTCAAGTTCCTGCCAATTTTACTTATAATCTTGACATCAGTGATGATAGTTTTTCTAGAATGCACATTATCTACGACCTACATGGTTAGAGTTTTGATGTTAGCTGCATGTAGAACTTTTTATTGAAGTCCTTGTCATCTTAAAATCACATGCAATGATTGGCAATGGTTCAGTCTACATTTTCCATATTTCAAGCAGCAAACTGTTGTTTCAAGCTGTGTTACATTGTTTAGTTCTATATGTAGGGAATATCAACATCCAAAGTACCAGTCTGAGCGAAACTATAGCGGCCCACTGCAGTATCGACATAAAAAAGATTTAGGTAATCCAGTTTCTGTCAATGAATTTTTTGTTTGATGACAAGAGAAATCCGCAGCCCCTTTGGGTGCGCACAGGTGAAAACCCTCGCTCCTATGCAATAACTCGCAAACCACATAGGAGAGGTAACCCGCACCAGGCTCGACCCAGAAGGCAAACCCGGGGTTTCGAACTTGAGACCTCCAACATGAAAGTCCCAAGCTCAAACCATTGGGCCATCCCGAAGGGTTTTCTGACAATGAATTTAGACTGGGTGATGTTTAAAAAACACCAATTCTTCCAGATAATTATGAGTTCTGATTTTCTAGATAACTTAGTTTTGTTACCTTTCCTTCTGAGTCTCTGGATAATATGCTTGTCGCAGGAGAAGATTCATCAGAAGGAGCTATTGTCCAACGCAAGGGACGTTTTCAAGTCACATCAGCA</genome_strand>
        <mrna_strand>GTGGTATCAGTGCTTGGAATTTCAATCTGGAGGATCTGAAGAACCAAGCTGCTCTT..................................................................................................CTTCCAGATTTTGACGACATTCCAGATGCTGAAGATTCAAGTACCAGGGGGAAGCTAAGGGAGGGAAATGGTGACGTTGGTTCTGTAGCAGAAAGGCATAATCAGTCGAGTGTCCTATCTCACGAG.........................................................................................................................................................................................................GATGAGATGAATGACAATCATGATTTGGATGGTTCACTTGCTGCATTTCCTATTAAGCCTCTTCAAGCACTCAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATGTTTTGATATGTGTGAAGATGACATAACTGCTAGTAGTCCAAGTTGGGAAGATACTATGCAATCAGAGTCTAATCAGCAGAATGATATGCTGTCACTAGCGAAAATTGAGGACCAAGAAGGTGGAAAAGATGATGGTGAGAATCTGCGACAGAGTAGCTCCTTGCCACGTTCTGTTATTCCTGGGCATAAAAAGTTTTTTAGTGGTTCACTGCTACAGGATAACGCTCTTTCACCCAAAAAAGTTGTTACTGATGGAGAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATATCAACATCCGAAGTACCAGTCTGAGCGAAACTATAGCGGCCCATTGCAGTACCGACATAAAAAAGATTTAG........................................................................................................................................................................................................................................................................................................................................................................GAGAAGATTCATCAGAAGGAGCTGTTGTCCAACGCNAGGGACGTTTTCAAGTCACATCAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E486837" ref_strand="+" ref_description="SGN-E486837 [cSTE-23-K16]">
      <seq>ctaagggagggaaatggtgacgttggttctgtagcagaaaggcataatcagtcgagtgtcctatctcacgaggatgagatgaatgacaatcatgatttggatggttcacttgctgcatttcctattaagcctcttcaagcactcaagggatgttttgatatgtgtgaagatgacataactgctagtagtccaagttgggaagatactatgcaatcagagtctactcagcagaatgatatgctgtcactagcgaaaattgaggaccaagatggtggaaaagatgatggtgagaatctgcgacagagtagctccttgccacgttctgttattcctgggcataaaaagttttttagtggttcactgctacaggataacgctctttcaccgaaaaaagttgttactgatggagagagggaatatcaacatccgaagtaccagtctgagcgaaactatagcggcccattgcagtaccgacataaaaaagatttaggagaagattcatcagaaggagctgttgtccaacgcaagggacgttttcaagtcacatcagcagatctaagtcccaaggaacctacaagctatttctttaacccagttcagggaggttctactagtgcaattaatctaggtctagcagctgcttcactacttccaacattgcaatgcattctacagcagaatacttttgcaagggaggaattagtgaagctgatncagttcgcagagcgaggatctgtcaaccctatagacttggctgaagctgggaccagtgatcttccgcagatgcctgctacttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="+" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="57637" stop="62773"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57937" g_stop="58008" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58009" i_stop="58209" i_length="201">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58210" g_stop="58283" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="146" r_length="74" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58284" i_stop="59053" i_length="770">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59054" g_stop="59320" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="413" r_length="267" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59321" i_stop="59920" i_length="600">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.961" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59921" g_stop="59997" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="490" r_length="77" r_score="0.961"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59998" i_stop="60357" i_length="360">
            <donor d_prob="0.611" d_score="0.96"/>
            <acceptor a_prob="0.798" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="60358" g_stop="60434" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="567" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="60435" i_stop="61704" i_length="1270">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="61705" g_stop="61830" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="693" r_length="126" r_score="0.968"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="61831" i_stop="61900" i_length="70">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="61901" g_stop="61943" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="694" r_stop="736" r_length="43" r_score="0.953"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="61944" i_stop="62066" i_length="123">
            <donor d_prob="0.886" d_score="0.95"/>
            <acceptor a_prob="0.991" a_score="0.91"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="62067" g_stop="62113" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="737" r_stop="783" r_length="47" r_score="0.915"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="62114" i_stop="62458" i_length="345">
            <donor d_prob="0.998" d_score="0.91"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="62459" g_stop="62473" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="784" r_stop="798" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="+" ref_id="SGN-E486837" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E486837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57937" e_stop="58008"/>
          <exon e_start="58210" e_stop="58283"/>
          <exon e_start="59054" e_stop="59320"/>
          <exon e_start="59921" e_stop="59997"/>
          <exon e_start="60358" e_stop="60434"/>
          <exon e_start="61705" e_stop="61830"/>
          <exon e_start="61901" e_stop="61943"/>
          <exon e_start="62067" e_stop="62113"/>
          <exon e_start="62459" e_stop="62473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGGGAGGGGAATGGTGACGTTGGTTCTGTAGTAGAAAGGCATAATCAGTCGAGTGTCCTATCTCACGAGGTATTCATATTAACCATGTTGAAGTTCTATATTACTATTCTTTATATACTATTCCTTCTCGATGGATTGATGCTGCTATAAGTCTTCTGAAACTCTTGTCATACTCAATTGCCTCCAGTCTGTTATCTCTTTGGATATTTTACAAGTTATTCAAATATGTCCTTCATTATCGGATATATAATTGTTGATATCTCCATTCAGGATGAGATGAATGGCAATCATGATTTGGATGGTTCTCTTGCTGCATTTCCTATTAAGCCTCTTCAAGCACTCAAGTAAGAATTTTGTCTTCCTCCTGGTTCTGCTTCTTCTATTGGCATTTGATAGTAAATCCATCATCACCAACTCAAATTATAGCCAGTTGGTTTCATTAACCAGATGTGTGTGTGTGTGTTTACATATATAATTATATTTTGCCATTTGGAATGTGGTATTCCTTGGAAGCACAACCCTGTTTGCATTATAGGTATGTCTTGCTGAGTCTGGTACATTAAGGAATGTGATGTTGAAATATTACAACCTTTCTTGATGCTCAAGTGCTGTGGGTATAATGATCCGAGGTATAGAATTAGCATAGTCGTCATGCTAGTAATTGAGTTAAATGTGTATAAAATTAGCCAGTAATTGAGTTAAAGGTACAGAATTAGCCAGTTGGTTTTATGATCAAGGTCTACAGATTTTACTATGTGAAAGATTTAAAAGTTTTGGTTCTCATTGAGTGAAATAATGTGGTCTAACCTTCATTTTGGCCGGAATTTCTTTCAATTAGCTCCTCCTCCCGTGATTGGCCTTGAAAGCATGCTTGCATCAGATTAACAGATGAATGTAGTAACCTGCTCACAAAGTAGAAAGTGAGGATAAGTTTGTTGAAGGACCCATTGTCGAAGACAAGGGAAAGTCAGTTAAGCAAAAAAGTTCCAGAAATAGTGGAATTGTTATTATTAATAATCCTATGTAAAGAAAAAGTGGAATTATTATATTTCCGACTTATTAGTTTTTGTTCCTTCTGAAATTTATGTGTATATAAAATGTTGTACCAATGCAGGGGATGTTTTGATATGTGTGAAGATGACATAACTGCTAGTAGTCCAAGTTGGGAAGATACTATGCAATCAGAGTCTAATCAGCAGAATGATATGCTATCACTAGCAAAAGTTGAGGACCAAGATGGTGGAAAAGATGATGGTGAGAATCTGCGACAGAGTAGCTCCTTGCCACGTTCTGTTATTCCTGGGCATAAAAAGTTTTTTAGTGGTTCACTGCTACAGGATAACGCTCTTTCACCCAAAAAAGTTGTTACTGATGGAGAGAGGTATATTTCTTTGTTGTGTTCACAATTGAACTGCTAGAGTTGGTCAAGATTTTCTGAAAACAAAAAATAGTTGCAATATGGATGAAGATAGCTATTATAGGATGGTAATACTACTAATTTGCCAGTAGATCATGGTATTCTCTCAGAAAGAAAGGAAGGGTAGTGAAAATGTGCAACCCCAAGTTAGTCGATGCTTGTTCCTGAAGTAAATGTTATTCAGCTGAGTTTTTTAAAAAAAAACGTCTGCGAAGATTACTAACCAGGAAGTAGTGGGATTCTTGTGCTTTATGAGTTCTGAATATTTTGAGTGTTCTAATTGTGTAATGCTGACTGAATTGTTAGAGTACTTAGGTGCTTCAAGTTCCTGCCAATTTTACTTATAATCTTGACATCAGTGATGATAGTTTTTCTAGAATGCACATTATCTACGACCTACATGGTTAGAGTTTTGATGTTAGCTGCATGTAGAACTTTTTATTGAAGTCCTTGTCATCTTAAAATCACATGCAATGATTGGCAATGGTTCAGTCTACATTTTCCATATTTCAAGCAGCAAACTGTTGTTTCAAGCTGTGTTACATTGTTTAGTTCTATATGTAGGGAATATCAACATCCAAAGTACCAGTCTGAGCGAAACTATAGCGGCCCACTGCAGTATCGACATAAAAAAGATTTAGGTAATCCAGTTTCTGTCAATGAATTTTTTGTTTGATGACAAGAGAAATCCGCAGCCCCTTTGGGTGCGCACAGGTGAAAACCCTCGCTCCTATGCAATAACTCGCAAACCACATAGGAGAGGTAACCCGCACCAGGCTCGACCCAGAAGGCAAACCCGGGGTTTCGAACTTGAGACCTCCAACATGAAAGTCCCAAGCTCAAACCATTGGGCCATCCCGAAGGGTTTTCTGACAATGAATTTAGACTGGGTGATGTTTAAAAAACACCAATTCTTCCAGATAATTATGAGTTCTGATTTTCTAGATAACTTAGTTTTGTTACCTTTCCTTCTGAGTCTCTGGATAATATGCTTGTCGCAGGAGAAGATTCATCAGAAGGAGCTATTGTCCAACGCAAGGGACGTTTTCAAGTCACATCAGCAGATCTAAGTCCCAAGGTATACATACTGTGCCTTCTTGCATTGATTGTCAGGTCAGCTATAATAATGCATTATGAAGGGGATTTTTCTTCAGTGACCAGATTTGGATTTTTCTTCAGTGACCAGATTCCGTCTCTAATACATGTGAATTAACACCAAATCATTCGCAGCATGAAAAAAAAACACCAAATCACTTGCAAATTAAACAGAGACACACAAATTCATTAGTGCCATACAGACATTGGTTTATTCAAAGATATGAACAAGAGTGGAAAAGGTTGCGTTAGGGGGTAAACTGTGGATAACTTTTAAACTGTTTTTTTTATGACCATGCTTTGTTTTCTTGTTACAAGCTTTCTGCATACCTGGGTAAGTGATTTTTACCTGAGCGGCAGCCCGTTTAATATAAGTGAAGCTGAATATTTGCCGCTTTGTTGATCACCAAGATAAAAAATTTAGCATTTAGTGGCAATATTTCCTTCCACATACTTGAGTTTATAGTGCATTTAGAGCGAATATTTGTTCATGATTTATCCATTTAAATCTTTTTTTTCTTTAAAAAAAAAGAAAAGAAAAATCCTTCCATGTTGGTTTGGGAGAAATTTGCTCTTTGGGTTTTGTTGGATTCTGAGCTTTTCTATTAAAGATCTTTAATTAAGAGGAGTTAACACTGTTTGCTTTGTGATGTGAGCATAAAATGATTTGTAAGGAAATTTGCTTTTTAGTTCTTTCAGCTGCTGTCTCCTTTCTATTTCCTTAATAAAGTTGCATTCTTCATGGGTTTCTTTAGTCTCACTTTCAGCATTGACTTCCCTGTTTGGTGTTTGTGAGAAATATAGTTCGCCGGTGAAAATCCTACCGGTGGCGCGTGACTGCGCGTGTAGCACTGTTTTCCGGTGGGGATGACTGGGCTTTGCTCGTCGGGAAATTCCGCAGCTAGTGGTGGTGTCAATTTTATGAAAACAATGAGGGAAAATAATAATTATCAGGACAGCAACTAGGTTACCAGATTTTTATTTTTTTTTGATTTCTTTTTTCTCACAATTTCTCTGATACCATGTGAGAAATATTGGAGAAAATATTATTGAATTGCGTATCTAAATTGTTGCATGAAGACCCTATTTATAGATACTACGTTGGAAACCTTTTCCAACTAGAATTCCTATTCTTATTCCTATTCTAATTCTTATTCTTATTCTAACAGTGTTCTCATGGTAAGTATCAAACTTTGCAATCTCTCTTTAGGTGATGGCTTCGTAACCATTGCCCTTTTTTTTCACTTGTTCAGGAACCTACAAGCTATTTCCTTAACCCAGTTCAGGGAGGTTCTACTAGTGCAATTAATCTAGGTCTAGCAGCTGCTTCACTACTTCCAACATTGCAATGCATTCTACAGCAGAATACTTTGCAAAGGGTAATTATTAATTCATCAAAATCTTGTGCATCACTGTTACCTGTTGCTTATCTGTTCTGCATCTTGTTAGGAGGAATTAGTGAAGCTGATCAAGTTCGCAGAGCGAGGATCTGGTAACTTATCCATTTACATTTGGTCATCACATTTGACCACTTCTGCTTTCGATGTTGAATGTTAAGTTGTTAACTATATTTATGTGTTGCCCCTGACTGGCTTGTTATTTGTATCTGTTTCAGTCAACCCCACAGACTTAGCTGAAGCTGGGACCAGTGATCTCCCGCAGGTAATTGTTTGTTTGTTATGTAATAAGATACGAGAAATGGTGCCACATTTTTTTGAAAATAATGTATTTTTAATTATTAAAAGAGATACGACCAAGTGATTAGGAAATAGAGTTTTGTAGGGTTCCATTAATATAATGTGAGAGTGGGGTTTATATCAAGTCTTTAACTCTTTTTCCATGAAGGTCTATAGGGATTAGAAGGTAGAACTTTTTTAGTAAAGGAAGGGGTTGGAGTTGGGGTGATGTGCCCTATCCCATGCTCAGTGTGTACAAGAAATGCATGGTGTATCTCTGAATTATGGCACGCTCCTGCATCCTCCTAACATCAGCACTTCCACTCTGCAGATGCCTGCTACTTCT</genome_strand>
        <mrna_strand>CTAAGGGAGGGAAATGGTGACGTTGGTTCTGTAGCAGAAAGGCATAATCAGTCGAGTGTCCTATCTCACGAG.........................................................................................................................................................................................................GATGAGATGAATGACAATCATGATTTGGATGGTTCACTTGCTGCATTTCCTATTAAGCCTCTTCAAGCACTCAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATGTTTTGATATGTGTGAAGATGACATAACTGCTAGTAGTCCAAGTTGGGAAGATACTATGCAATCAGAGTCTACTCAGCAGAATGATATGCTGTCACTAGCGAAAATTGAGGACCAAGATGGTGGAAAAGATGATGGTGAGAATCTGCGACAGAGTAGCTCCTTGCCACGTTCTGTTATTCCTGGGCATAAAAAGTTTTTTAGTGGTTCACTGCTACAGGATAACGCTCTTTCACCGAAAAAAGTTGTTACTGATGGAGAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATATCAACATCCGAAGTACCAGTCTGAGCGAAACTATAGCGGCCCATTGCAGTACCGACATAAAAAAGATTTAG........................................................................................................................................................................................................................................................................................................................................................................GAGAAGATTCATCAGAAGGAGCTGTTGTCCAACGCAAGGGACGTTTTCAAGTCACATCAGCAGATCTAAGTCCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCTACAAGCTATTTCTTTAACCCAGTTCAGGGAGGTTCTACTAGTGCAATTAATCTAGGTCTAGCAGCTGCTTCACTACTTCCAACATTGCAATGCATTCTACAGCAGAATACTTTTGCAAGG......................................................................GAGGAATTAGTGAAGCTGATNCAGTTCGCAGAGCGAGGATCTG...........................................................................................................................TCAACCCTATAGACTTGGCTGAAGCTGGGACCAGTGATCTTCCGCAG.........................................................................................................................................................................................................................................................................................................................................................ATGCCTGCTACTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E609886" ref_strand="+" ref_description="SGN-E609886 [46378]">
      <seq>cagaaaggcataatcagtcgagtgtcctatctcacgaggatgagatgaatgacaatcatgatttggatggttcacttgctgcatttcctattaagcctcttcaagcactcaagggatgttttgatatgtgtgaagatgacataactgctagtagtccaagttgggaagatactatgcaatcagagtctaatcagcaaaatggtatgctgtcactagcgaaaattgaggaccaagatggtggaaaagatgatggtgagaatctgcgacagagtagctccttgccacgttctgttattcctgggcataaaaagttttttagtggttcactgctacaggataacgctctttcacccaaaaaagttgttactgatggagagagggaatatcaacatccgaagtaccagtctgagcgaaactatagcggcccattgcagtaccgacataaaaaagatttaggagaagattcatcagaaggagctgttgtccaacgcaagggacgttttcaagtcacatcagcagatctaagtcccaaggtatatatactgtgccttcttgcattgattgtcaagtcagctataataatgcattatgaaggggagttttcttcagtgatcagattccgtctataatacatgtgaattaacaccaaatcacttgcaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="+" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="57672" stop="60917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57971" g_stop="58008" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58009" i_stop="58209" i_length="201">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58210" g_stop="58283" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="112" r_length="74" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58284" i_stop="59053" i_length="770">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59054" g_stop="59320" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="379" r_length="267" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59321" i_stop="59920" i_length="600">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59921" g_stop="59997" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="456" r_length="77" r_score="0.961"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59998" i_stop="60357" i_length="360">
            <donor d_prob="0.611" d_score="0.96"/>
            <acceptor a_prob="0.798" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="60358" g_stop="60534" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="631" r_length="175" r_score="0.927"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="60535" i_stop="60586" i_length="52">
            <donor d_prob="0.000" d_score="0.80"/>
            <acceptor a_prob="0.651" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="60587" g_stop="60620" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="664" r_length="33" r_score="0.794"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="+" ref_id="SGN-E609886" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E609886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57971" e_stop="58008"/>
          <exon e_start="58210" e_stop="58283"/>
          <exon e_start="59054" e_stop="59320"/>
          <exon e_start="59921" e_stop="59997"/>
          <exon e_start="60358" e_stop="60534"/>
          <exon e_start="60587" e_stop="60620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAAAGGCATAATCAGTCGAGTGTCCTATCTCACGAGGTATTCATATTAACCATGTTGAAGTTCTATATTACTATTCTTTATATACTATTCCTTCTCGATGGATTGATGCTGCTATAAGTCTTCTGAAACTCTTGTCATACTCAATTGCCTCCAGTCTGTTATCTCTTTGGATATTTTACAAGTTATTCAAATATGTCCTTCATTATCGGATATATAATTGTTGATATCTCCATTCAGGATGAGATGAATGGCAATCATGATTTGGATGGTTCTCTTGCTGCATTTCCTATTAAGCCTCTTCAAGCACTCAAGTAAGAATTTTGTCTTCCTCCTGGTTCTGCTTCTTCTATTGGCATTTGATAGTAAATCCATCATCACCAACTCAAATTATAGCCAGTTGGTTTCATTAACCAGATGTGTGTGTGTGTGTTTACATATATAATTATATTTTGCCATTTGGAATGTGGTATTCCTTGGAAGCACAACCCTGTTTGCATTATAGGTATGTCTTGCTGAGTCTGGTACATTAAGGAATGTGATGTTGAAATATTACAACCTTTCTTGATGCTCAAGTGCTGTGGGTATAATGATCCGAGGTATAGAATTAGCATAGTCGTCATGCTAGTAATTGAGTTAAATGTGTATAAAATTAGCCAGTAATTGAGTTAAAGGTACAGAATTAGCCAGTTGGTTTTATGATCAAGGTCTACAGATTTTACTATGTGAAAGATTTAAAAGTTTTGGTTCTCATTGAGTGAAATAATGTGGTCTAACCTTCATTTTGGCCGGAATTTCTTTCAATTAGCTCCTCCTCCCGTGATTGGCCTTGAAAGCATGCTTGCATCAGATTAACAGATGAATGTAGTAACCTGCTCACAAAGTAGAAAGTGAGGATAAGTTTGTTGAAGGACCCATTGTCGAAGACAAGGGAAAGTCAGTTAAGCAAAAAAGTTCCAGAAATAGTGGAATTGTTATTATTAATAATCCTATGTAAAGAAAAAGTGGAATTATTATATTTCCGACTTATTAGTTTTTGTTCCTTCTGAAATTTATGTGTATATAAAATGTTGTACCAATGCAGGGGATGTTTTGATATGTGTGAAGATGACATAACTGCTAGTAGTCCAAGTTGGGAAGATACTATGCAATCAGAGTCTAATCAGCAGAATGATATGCTATCACTAGCAAAAGTTGAGGACCAAGATGGTGGAAAAGATGATGGTGAGAATCTGCGACAGAGTAGCTCCTTGCCACGTTCTGTTATTCCTGGGCATAAAAAGTTTTTTAGTGGTTCACTGCTACAGGATAACGCTCTTTCACCCAAAAAAGTTGTTACTGATGGAGAGAGGTATATTTCTTTGTTGTGTTCACAATTGAACTGCTAGAGTTGGTCAAGATTTTCTGAAAACAAAAAATAGTTGCAATATGGATGAAGATAGCTATTATAGGATGGTAATACTACTAATTTGCCAGTAGATCATGGTATTCTCTCAGAAAGAAAGGAAGGGTAGTGAAAATGTGCAACCCCAAGTTAGTCGATGCTTGTTCCTGAAGTAAATGTTATTCAGCTGAGTTTTTTAAAAAAAAACGTCTGCGAAGATTACTAACCAGGAAGTAGTGGGATTCTTGTGCTTTATGAGTTCTGAATATTTTGAGTGTTCTAATTGTGTAATGCTGACTGAATTGTTAGAGTACTTAGGTGCTTCAAGTTCCTGCCAATTTTACTTATAATCTTGACATCAGTGATGATAGTTTTTCTAGAATGCACATTATCTACGACCTACATGGTTAGAGTTTTGATGTTAGCTGCATGTAGAACTTTTTATTGAAGTCCTTGTCATCTTAAAATCACATGCAATGATTGGCAATGGTTCAGTCTACATTTTCCATATTTCAAGCAGCAAACTGTTGTTTCAAGCTGTGTTACATTGTTTAGTTCTATATGTAGGGAATATCAACATCCAAAGTACCAGTCTGAGCGAAACTATAGCGGCCCACTGCAGTATCGACATAAAAAAGATTTAGGTAATCCAGTTTCTGTCAATGAATTTTTTGTTTGATGACAAGAGAAATCCGCAGCCCCTTTGGGTGCGCACAGGTGAAAACCCTCGCTCCTATGCAATAACTCGCAAACCACATAGGAGAGGTAACCCGCACCAGGCTCGACCCAGAAGGCAAACCCGGGGTTTCGAACTTGAGACCTCCAACATGAAAGTCCCAAGCTCAAACCATTGGGCCATCCCGAAGGGTTTTCTGACAATGAATTTAGACTGGGTGATGTTTAAAAAACACCAATTCTTCCAGATAATTATGAGTTCTGATTTTCTAGATAACTTAGTTTTGTTACCTTTCCTTCTGAGTCTCTGGATAATATGCTTGTCGCAGGAGAAGATTCATCAGAAGGAGCTATTGTCCAACGCAAGGGACGTTTTCAAGTCACATCAGCAGATCTAAGTCCCAAGGTATACATACTGTGCCTTCTTGCATTGATTGTCAGGTCAGCTATAATAATGCATTATGAAGGGGATTTTTCTTCAGTGACCAGATTTGGATTTTTCTTCAGTGACCAGATTCCGTCTCTAATACATGTGAATTAACACCAAATCATTCGCAGCATGAAAAAAAAACACCAAATCACTTGCAAATTA</genome_strand>
        <mrna_strand>CAGAAAGGCATAATCAGTCGAGTGTCCTATCTCACGAG.........................................................................................................................................................................................................GATGAGATGAATGACAATCATGATTTGGATGGTTCACTTGCTGCATTTCCTATTAAGCCTCTTCAAGCACTCAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATGTTTTGATATGTGTGAAGATGACATAACTGCTAGTAGTCCAAGTTGGGAAGATACTATGCAATCAGAGTCTAATCAGCAAAATGGTATGCTGTCACTAGCGAAAATTGAGGACCAAGATGGTGGAAAAGATGATGGTGAGAATCTGCGACAGAGTAGCTCCTTGCCACGTTCTGTTATTCCTGGGCATAAAAAGTTTTTTAGTGGTTCACTGCTACAGGATAACGCTCTTTCACCCAAAAAAGTTGTTACTGATGGAGAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATATCAACATCCGAAGTACCAGTCTGAGCGAAACTATAGCGGCCCATTGCAGTACCGACATAAAAAAGATTTAG........................................................................................................................................................................................................................................................................................................................................................................GAGAAGATTCATCAGAAGGAGCTGTTGTCCAACGCAAGGGACGTTTTCAAGTCACATCAGCAGATCTAAGTCCCAAGGTATATATACTGTGCCTTCTTGCATTGATTGTCAAGTCAGCTATAATAATGCATTATGAAGGGGAGTTTTCTTCAGTGATCAGATTCCG-TCTATAAT-A....................................................CATG-TGAATTAACACCAAATCACTTGCAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E342474" ref_strand="+" ref_description="SGN-E342474 [cTOF-8-D1]">
      <seq>tgttttgatatgtgtgaagacgacataactgctagtagtccaagttgggaagacacctatgcaatcagagtctaatcagcagaatgactatgctatcactagcaaaagttgaggaccaagacggtggaaaagacgatggtgagaatctgcgacagagtagctccttgccacgttctgttattcctgggcataaaaaagttttttagtggttcactgctacaggataacgctctttcacccaaaaaagttgttactgatggagagagggaatatcaacatccaaagtaccagtctgagcgaaactatagcggcccactgcagtatcgacataaaaaagatttaggagaagaattatcagaaggaagctattgtccaacgcaagggacgttttcaagtcacatcagcagatctaagtcccaaggaacctacaagctatttccttaacccagttcagggaggttctactagtgcaattattctaggtctagcagctgcttcatatcttccaacattgcaatgcattctacagcagaatactttgcaaaggggaggaaattagtgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="+" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="58758" stop="62133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59058" g_stop="59320" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59321" i_stop="59920" i_length="600">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59921" g_stop="59997" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="343" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59998" i_stop="60357" i_length="360">
            <donor d_prob="0.611" d_score="1.00"/>
            <acceptor a_prob="0.798" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60358" g_stop="60434" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="421" r_length="78" r_score="0.948"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60435" i_stop="61704" i_length="1270">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61705" g_stop="61830" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="547" r_length="126" r_score="0.968"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61831" i_stop="61900" i_length="70">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61901" g_stop="61915" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="564" r_length="17" r_score="0.733"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="+" ref_id="SGN-E342474" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59058" e_stop="59320"/>
          <exon e_start="59921" e_stop="59997"/>
          <exon e_start="60358" e_stop="60434"/>
          <exon e_start="61705" e_stop="61830"/>
          <exon e_start="61901" e_stop="61915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTTGATATGTGTGAAGATGACATAACTGCTAGTAGTCCAAGTTGGGAAGATA-CTATGCAATCAGAGTCTAATCAGCAGAATGA-TATGCTATCACTAGCAAAAGTTGAGGACCAAGATGGTGGAAAAGATGATGGTGAGAATCTGCGACAGAGTAGCTCCTTGCCACGTTCTGTTATTCCTGGGCAT-AAAAAGTTTTTTAGTGGTTCACTGCTACAGGATAACGCTCTTTCACCCAAAAAAGTTGTTACTGATGGAGAGAGGTATATTTCTTTGTTGTGTTCACAATTGAACTGCTAGAGTTGGTCAAGATTTTCTGAAAACAAAAAATAGTTGCAATATGGATGAAGATAGCTATTATAGGATGGTAATACTACTAATTTGCCAGTAGATCATGGTATTCTCTCAGAAAGAAAGGAAGGGTAGTGAAAATGTGCAACCCCAAGTTAGTCGATGCTTGTTCCTGAAGTAAATGTTATTCAGCTGAGTTTTTTAAAAAAAAACGTCTGCGAAGATTACTAACCAGGAAGTAGTGGGATTCTTGTGCTTTATGAGTTCTGAATATTTTGAGTGTTCTAATTGTGTAATGCTGACTGAATTGTTAGAGTACTTAGGTGCTTCAAGTTCCTGCCAATTTTACTTATAATCTTGACATCAGTGATGATAGTTTTTCTAGAATGCACATTATCTACGACCTACATGGTTAGAGTTTTGATGTTAGCTGCATGTAGAACTTTTTATTGAAGTCCTTGTCATCTTAAAATCACATGCAATGATTGGCAATGGTTCAGTCTACATTTTCCATATTTCAAGCAGCAAACTGTTGTTTCAAGCTGTGTTACATTGTTTAGTTCTATATGTAGGGAATATCAACATCCAAAGTACCAGTCTGAGCGAAACTATAGCGGCCCACTGCAGTATCGACATAAAAAAGATTTAGGTAATCCAGTTTCTGTCAATGAATTTTTTGTTTGATGACAAGAGAAATCCGCAGCCCCTTTGGGTGCGCACAGGTGAAAACCCTCGCTCCTATGCAATAACTCGCAAACCACATAGGAGAGGTAACCCGCACCAGGCTCGACCCAGAAGGCAAACCCGGGGTTTCGAACTTGAGACCTCCAACATGAAAGTCCCAAGCTCAAACCATTGGGCCATCCCGAAGGGTTTTCTGACAATGAATTTAGACTGGGTGATGTTTAAAAAACACCAATTCTTCCAGATAATTATGAGTTCTGATTTTCTAGATAACTTAGTTTTGTTACCTTTCCTTCTGAGTCTCTGGATAATATGCTTGTCGCAGGAGAAGATTCATCAGAAGG-AGCTATTGTCCAACGCAAGGGACGTTTTCAAGTCACATCAGCAGATCTAAGTCCCAAGGTATACATACTGTGCCTTCTTGCATTGATTGTCAGGTCAGCTATAATAATGCATTATGAAGGGGATTTTTCTTCAGTGACCAGATTTGGATTTTTCTTCAGTGACCAGATTCCGTCTCTAATACATGTGAATTAACACCAAATCATTCGCAGCATGAAAAAAAAACACCAAATCACTTGCAAATTAAACAGAGACACACAAATTCATTAGTGCCATACAGACATTGGTTTATTCAAAGATATGAACAAGAGTGGAAAAGGTTGCGTTAGGGGGTAAACTGTGGATAACTTTTAAACTGTTTTTTTTATGACCATGCTTTGTTTTCTTGTTACAAGCTTTCTGCATACCTGGGTAAGTGATTTTTACCTGAGCGGCAGCCCGTTTAATATAAGTGAAGCTGAATATTTGCCGCTTTGTTGATCACCAAGATAAAAAATTTAGCATTTAGTGGCAATATTTCCTTCCACATACTTGAGTTTATAGTGCATTTAGAGCGAATATTTGTTCATGATTTATCCATTTAAATCTTTTTTTTCTTTAAAAAAAAAGAAAAGAAAAATCCTTCCATGTTGGTTTGGGAGAAATTTGCTCTTTGGGTTTTGTTGGATTCTGAGCTTTTCTATTAAAGATCTTTAATTAAGAGGAGTTAACACTGTTTGCTTTGTGATGTGAGCATAAAATGATTTGTAAGGAAATTTGCTTTTTAGTTCTTTCAGCTGCTGTCTCCTTTCTATTTCCTTAATAAAGTTGCATTCTTCATGGGTTTCTTTAGTCTCACTTTCAGCATTGACTTCCCTGTTTGGTGTTTGTGAGAAATATAGTTCGCCGGTGAAAATCCTACCGGTGGCGCGTGACTGCGCGTGTAGCACTGTTTTCCGGTGGGGATGACTGGGCTTTGCTCGTCGGGAAATTCCGCAGCTAGTGGTGGTGTCAATTTTATGAAAACAATGAGGGAAAATAATAATTATCAGGACAGCAACTAGGTTACCAGATTTTTATTTTTTTTTGATTTCTTTTTTCTCACAATTTCTCTGATACCATGTGAGAAATATTGGAGAAAATATTATTGAATTGCGTATCTAAATTGTTGCATGAAGACCCTATTTATAGATACTACGTTGGAAACCTTTTCCAACTAGAATTCCTATTCTTATTCCTATTCTAATTCTTATTCTTATTCTAACAGTGTTCTCATGGTAAGTATCAAACTTTGCAATCTCTCTTTAGGTGATGGCTTCGTAACCATTGCCCTTTTTTTTCACTTGTTCAGGAACCTACAAGCTATTTCCTTAACCCAGTTCAGGGAGGTTCTACTAGTGCAATTAATCTAGGTCTAGCAGCTGCTTCACTACTTCCAACATTGCAATGCATTCTACAGCAGAATACTTTGCAAAGGGTAATTATTAATTCATCAAAATCTTGTGCATCACTGTTACCTGTTGCTTATCTGTTCTGCATCTTGTTAG-GAGG-AATTAGTGAAG</genome_strand>
        <mrna_strand>TGTTTTGATATGTGTGAAGACGACATAACTGCTAGTAGTCCAAGTTGGGAAGACACCTATGCAATCAGAGTCTAATCAGCAGAATGACTATGCTATCACTAGCAAAAGTTGAGGACCAAGACGGTGGAAAAGACGATGGTGAGAATCTGCGACAGAGTAGCTCCTTGCCACGTTCTGTTATTCCTGGGCATAAAAAAGTTTTTTAGTGGTTCACTGCTACAGGATAACGCTCTTTCACCCAAAAAAGTTGTTACTGATGGAGAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATATCAACATCCAAAGTACCAGTCTGAGCGAAACTATAGCGGCCCACTGCAGTATCGACATAAAAAAGATTTAG........................................................................................................................................................................................................................................................................................................................................................................GAGAAGAATTATCAGAAGGAAGCTATTGTCCAACGCAAGGGACGTTTTCAAGTCACATCAGCAGATCTAAGTCCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCTACAAGCTATTTCCTTAACCCAGTTCAGGGAGGTTCTACTAGTGCAATTATTCTAGGTCTAGCAGCTGCTTCATATCTTCCAACATTGCAATGCATTCTACAGCAGAATACTTTGCAAAGG......................................................................GGAGGAAATTAGTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E348136" ref_strand="+" ref_description="SGN-E348136 [cTOF-27-I21]">
      <seq>ataactgctagtagtccaagttgggaagatactatgcaatcagagtctaatcagcagaatgatatgctatcactagcaaaagttgaggaccaagatggtggaaaagatgatgtggttcactgctacaggataacgctctttcacccaaaaaagttgttactgatggagagagggaatatcaacatccaaagtaccagtctgagcgaaactatagcggcccactgcagtatcgacataaaaaagatttaggagaagattcatcagaaggagctattgtccaacgcaagggacgttttcaagtcacatcagcagatctaagtcccaaggaacctacaagctatttccttaacccagttcagggaggttctactagtgcaattaatctaggtctagcagctgcttcactacttccaacattgcaatgcattctacagcagaatactttgcaaagggaggaattagtgaagctgatcaagttcgcagagcgaggatctgtcaaccccacagacttagctgaagctgggaccagtgatctcccgcagatgcctgctacttctgttagagagagagaactgcaatcaatggtcattcaattgcaacaaagcattggaagtcttgtggaagagttgcagagacaaaagatgaaaaatgttcagttngaaaagaaaattgatcgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="+" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="58782" stop="62944"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59082" g_stop="59193" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59194" i_stop="59260" i_length="67">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59261" g_stop="59320" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="172" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59321" i_stop="59920" i_length="600">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59921" g_stop="59997" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="249" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59998" i_stop="60357" i_length="360">
            <donor d_prob="0.611" d_score="1.00"/>
            <acceptor a_prob="0.798" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60358" g_stop="60434" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="326" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60435" i_stop="61704" i_length="1270">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61705" g_stop="61830" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="452" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="61831" i_stop="61900" i_length="70">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="61901" g_stop="61943" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="495" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="61944" i_stop="62066" i_length="123">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="62067" g_stop="62113" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="542" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="62114" i_stop="62458" i_length="345">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="62459" g_stop="62520" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="604" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="62521" i_stop="62590" i_length="70">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="62591" g_stop="62642" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="656" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="62643" i_stop="62829" i_length="187">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="62830" g_stop="62853" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="680" r_length="24" r_score="0.833"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="+" ref_id="SGN-E348136" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59082" e_stop="59193"/>
          <exon e_start="59261" e_stop="59320"/>
          <exon e_start="59921" e_stop="59997"/>
          <exon e_start="60358" e_stop="60434"/>
          <exon e_start="61705" e_stop="61830"/>
          <exon e_start="61901" e_stop="61943"/>
          <exon e_start="62067" e_stop="62113"/>
          <exon e_start="62459" e_stop="62520"/>
          <exon e_start="62591" e_stop="62642"/>
          <exon e_start="62830" e_stop="62853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAACTGCTAGTAGTCCAAGTTGGGAAGATACTATGCAATCAGAGTCTAATCAGCAGAATGATATGCTATCACTAGCAAAAGTTGAGGACCAAGATGGTGGAAAAGATGATGGTGAGAATCTGCGACAGAGTAGCTCCTTGCCACGTTCTGTTATTCCTGGGCATAAAAAGTTTTTTAGTGGTTCACTGCTACAGGATAACGCTCTTTCACCCAAAAAAGTTGTTACTGATGGAGAGAGGTATATTTCTTTGTTGTGTTCACAATTGAACTGCTAGAGTTGGTCAAGATTTTCTGAAAACAAAAAATAGTTGCAATATGGATGAAGATAGCTATTATAGGATGGTAATACTACTAATTTGCCAGTAGATCATGGTATTCTCTCAGAAAGAAAGGAAGGGTAGTGAAAATGTGCAACCCCAAGTTAGTCGATGCTTGTTCCTGAAGTAAATGTTATTCAGCTGAGTTTTTTAAAAAAAAACGTCTGCGAAGATTACTAACCAGGAAGTAGTGGGATTCTTGTGCTTTATGAGTTCTGAATATTTTGAGTGTTCTAATTGTGTAATGCTGACTGAATTGTTAGAGTACTTAGGTGCTTCAAGTTCCTGCCAATTTTACTTATAATCTTGACATCAGTGATGATAGTTTTTCTAGAATGCACATTATCTACGACCTACATGGTTAGAGTTTTGATGTTAGCTGCATGTAGAACTTTTTATTGAAGTCCTTGTCATCTTAAAATCACATGCAATGATTGGCAATGGTTCAGTCTACATTTTCCATATTTCAAGCAGCAAACTGTTGTTTCAAGCTGTGTTACATTGTTTAGTTCTATATGTAGGGAATATCAACATCCAAAGTACCAGTCTGAGCGAAACTATAGCGGCCCACTGCAGTATCGACATAAAAAAGATTTAGGTAATCCAGTTTCTGTCAATGAATTTTTTGTTTGATGACAAGAGAAATCCGCAGCCCCTTTGGGTGCGCACAGGTGAAAACCCTCGCTCCTATGCAATAACTCGCAAACCACATAGGAGAGGTAACCCGCACCAGGCTCGACCCAGAAGGCAAACCCGGGGTTTCGAACTTGAGACCTCCAACATGAAAGTCCCAAGCTCAAACCATTGGGCCATCCCGAAGGGTTTTCTGACAATGAATTTAGACTGGGTGATGTTTAAAAAACACCAATTCTTCCAGATAATTATGAGTTCTGATTTTCTAGATAACTTAGTTTTGTTACCTTTCCTTCTGAGTCTCTGGATAATATGCTTGTCGCAGGAGAAGATTCATCAGAAGGAGCTATTGTCCAACGCAAGGGACGTTTTCAAGTCACATCAGCAGATCTAAGTCCCAAGGTATACATACTGTGCCTTCTTGCATTGATTGTCAGGTCAGCTATAATAATGCATTATGAAGGGGATTTTTCTTCAGTGACCAGATTTGGATTTTTCTTCAGTGACCAGATTCCGTCTCTAATACATGTGAATTAACACCAAATCATTCGCAGCATGAAAAAAAAACACCAAATCACTTGCAAATTAAACAGAGACACACAAATTCATTAGTGCCATACAGACATTGGTTTATTCAAAGATATGAACAAGAGTGGAAAAGGTTGCGTTAGGGGGTAAACTGTGGATAACTTTTAAACTGTTTTTTTTATGACCATGCTTTGTTTTCTTGTTACAAGCTTTCTGCATACCTGGGTAAGTGATTTTTACCTGAGCGGCAGCCCGTTTAATATAAGTGAAGCTGAATATTTGCCGCTTTGTTGATCACCAAGATAAAAAATTTAGCATTTAGTGGCAATATTTCCTTCCACATACTTGAGTTTATAGTGCATTTAGAGCGAATATTTGTTCATGATTTATCCATTTAAATCTTTTTTTTCTTTAAAAAAAAAGAAAAGAAAAATCCTTCCATGTTGGTTTGGGAGAAATTTGCTCTTTGGGTTTTGTTGGATTCTGAGCTTTTCTATTAAAGATCTTTAATTAAGAGGAGTTAACACTGTTTGCTTTGTGATGTGAGCATAAAATGATTTGTAAGGAAATTTGCTTTTTAGTTCTTTCAGCTGCTGTCTCCTTTCTATTTCCTTAATAAAGTTGCATTCTTCATGGGTTTCTTTAGTCTCACTTTCAGCATTGACTTCCCTGTTTGGTGTTTGTGAGAAATATAGTTCGCCGGTGAAAATCCTACCGGTGGCGCGTGACTGCGCGTGTAGCACTGTTTTCCGGTGGGGATGACTGGGCTTTGCTCGTCGGGAAATTCCGCAGCTAGTGGTGGTGTCAATTTTATGAAAACAATGAGGGAAAATAATAATTATCAGGACAGCAACTAGGTTACCAGATTTTTATTTTTTTTTGATTTCTTTTTTCTCACAATTTCTCTGATACCATGTGAGAAATATTGGAGAAAATATTATTGAATTGCGTATCTAAATTGTTGCATGAAGACCCTATTTATAGATACTACGTTGGAAACCTTTTCCAACTAGAATTCCTATTCTTATTCCTATTCTAATTCTTATTCTTATTCTAACAGTGTTCTCATGGTAAGTATCAAACTTTGCAATCTCTCTTTAGGTGATGGCTTCGTAACCATTGCCCTTTTTTTTCACTTGTTCAGGAACCTACAAGCTATTTCCTTAACCCAGTTCAGGGAGGTTCTACTAGTGCAATTAATCTAGGTCTAGCAGCTGCTTCACTACTTCCAACATTGCAATGCATTCTACAGCAGAATACTTTGCAAAGGGTAATTATTAATTCATCAAAATCTTGTGCATCACTGTTACCTGTTGCTTATCTGTTCTGCATCTTGTTAGGAGGAATTAGTGAAGCTGATCAAGTTCGCAGAGCGAGGATCTGGTAACTTATCCATTTACATTTGGTCATCACATTTGACCACTTCTGCTTTCGATGTTGAATGTTAAGTTGTTAACTATATTTATGTGTTGCCCCTGACTGGCTTGTTATTTGTATCTGTTTCAGTCAACCCCACAGACTTAGCTGAAGCTGGGACCAGTGATCTCCCGCAGGTAATTGTTTGTTTGTTATGTAATAAGATACGAGAAATGGTGCCACATTTTTTTGAAAATAATGTATTTTTAATTATTAAAAGAGATACGACCAAGTGATTAGGAAATAGAGTTTTGTAGGGTTCCATTAATATAATGTGAGAGTGGGGTTTATATCAAGTCTTTAACTCTTTTTCCATGAAGGTCTATAGGGATTAGAAGGTAGAACTTTTTTAGTAAAGGAAGGGGTTGGAGTTGGGGTGATGTGCCCTATCCCATGCTCAGTGTGTACAAGAAATGCATGGTGTATCTCTGAATTATGGCACGCTCCTGCATCCTCCTAACATCAGCACTTCCACTCTGCAGATGCCTGCTACTTCTGTTAGAGAGAGAGAACTGCAATCAATGGTCATTCAATTGCAACAAAGGTATGATATTCGTTGATAAATTTGAACTTGGTTGCTTGTTATGGTAAACTGAAGTCTCATCAATTTTCAGCATTGGAAGTCTTGTGGAAGAGTTGCAGAGACAAAAGATGAAAAATGTTCAGGTATGTGCTGTACAATTGTGGGGGAAGTATTTTCCTTTATTTTCTTCTAAAGATATGATTTCTTTAGAACAAAGTTGAAAACCGAAAATGTAAATGCAGTGCTGCTTTATTCTTGGAATGTTATTATAAAATTTCCAAGAAACCATTGATAACATGTTTTTCTAAAGCTGTCATTTCTGGCTTGCAGTTGGAAAAGAAATTGAATCGCTGA</genome_strand>
        <mrna_strand>ATAACTGCTAGTAGTCCAAGTTGGGAAGATACTATGCAATCAGAGTCTAATCAGCAGAATGATATGCTATCACTAGCAAAAGTTGAGGACCAAGATGGTGGAAAAGATGATG...................................................................TGGTTCACTGCTACAGGATAACGCTCTTTCACCCAAAAAAGTTGTTACTGATGGAGAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATATCAACATCCAAAGTACCAGTCTGAGCGAAACTATAGCGGCCCACTGCAGTATCGACATAAAAAAGATTTAG........................................................................................................................................................................................................................................................................................................................................................................GAGAAGATTCATCAGAAGGAGCTATTGTCCAACGCAAGGGACGTTTTCAAGTCACATCAGCAGATCTAAGTCCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCTACAAGCTATTTCCTTAACCCAGTTCAGGGAGGTTCTACTAGTGCAATTAATCTAGGTCTAGCAGCTGCTTCACTACTTCCAACATTGCAATGCATTCTACAGCAGAATACTTTGCAAAGG......................................................................GAGGAATTAGTGAAGCTGATCAAGTTCGCAGAGCGAGGATCTG...........................................................................................................................TCAACCCCACAGACTTAGCTGAAGCTGGGACCAGTGATCTCCCGCAG.........................................................................................................................................................................................................................................................................................................................................................ATGCCTGCTACTTCTGTTAGAGAGAGAGAACTGCAATCAATGGTCATTCAATTGCAACAAAG......................................................................CATTGGAAGTCTTGTGGAAGAGTTGCAGAGACAAAAGATGAAAAATGTTCAG...........................................................................................................................................................................................TTNGAAAAGAAAATTGATCGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E250798" ref_strand="+" ref_description="SGN-E250798 [cLEG-13-C5]">
      <seq>gatggtgagaatctgcgacagagtagctccttgccacgttctgttattcctgggcgtaaaaagtggtttagtggttcactgctacaggataacgctctttcacccaaaaaagttgttactgatggagagagggaatatcaacatccaaagtaccagtctgagcgaaactatagcggcccactgcagtatcgacataaaaaagatttaggagaagattcatcagaaggagctattgtccaacgcaagggacgttttcaagtcacatcagcagatctaagtcccaaggaacctacaagctatttccttaacccagttcagggaggttctactagtgcaattaatctaggtctagcagctgcttcactacttccaacattgcaatgcattctacagcagaatactttgcaaagggaggaattagtgaagctgatcaagttcgcagagcgaggatctgtcaaccccacagacttagctgaagctgggaccagtgatctcccgcagatgcctgctacttctgttagagagagagaactgcaatcaatggtcatttaattgcaacaaagcattggaagtcttggggaagagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="+" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="58890" stop="62913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59190" g_stop="59320" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59321" i_stop="59920" i_length="600">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59921" g_stop="59997" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="208" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59998" i_stop="60357" i_length="360">
            <donor d_prob="0.611" d_score="1.00"/>
            <acceptor a_prob="0.798" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60358" g_stop="60434" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="285" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60435" i_stop="61704" i_length="1270">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61705" g_stop="61830" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="411" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61831" i_stop="61900" i_length="70">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61901" g_stop="61943" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="454" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="61944" i_stop="62066" i_length="123">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="62067" g_stop="62113" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="501" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="62114" i_stop="62458" i_length="345">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="62459" g_stop="62520" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="563" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="62521" i_stop="62590" i_length="70">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.954" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="62591" g_stop="62613" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="586" r_length="23" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="+" ref_id="SGN-E250798" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59190" e_stop="59320"/>
          <exon e_start="59921" e_stop="59997"/>
          <exon e_start="60358" e_stop="60434"/>
          <exon e_start="61705" e_stop="61830"/>
          <exon e_start="61901" e_stop="61943"/>
          <exon e_start="62067" e_stop="62113"/>
          <exon e_start="62459" e_stop="62520"/>
          <exon e_start="62591" e_stop="62613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGTGAGAATCTGCGACAGAGTAGCTCCTTGCCACGTTCTGTTATTCCTGGGCATAAAAAGTTTTTTAGTGGTTCACTGCTACAGGATAACGCTCTTTCACCCAAAAAAGTTGTTACTGATGGAGAGAGGTATATTTCTTTGTTGTGTTCACAATTGAACTGCTAGAGTTGGTCAAGATTTTCTGAAAACAAAAAATAGTTGCAATATGGATGAAGATAGCTATTATAGGATGGTAATACTACTAATTTGCCAGTAGATCATGGTATTCTCTCAGAAAGAAAGGAAGGGTAGTGAAAATGTGCAACCCCAAGTTAGTCGATGCTTGTTCCTGAAGTAAATGTTATTCAGCTGAGTTTTTTAAAAAAAAACGTCTGCGAAGATTACTAACCAGGAAGTAGTGGGATTCTTGTGCTTTATGAGTTCTGAATATTTTGAGTGTTCTAATTGTGTAATGCTGACTGAATTGTTAGAGTACTTAGGTGCTTCAAGTTCCTGCCAATTTTACTTATAATCTTGACATCAGTGATGATAGTTTTTCTAGAATGCACATTATCTACGACCTACATGGTTAGAGTTTTGATGTTAGCTGCATGTAGAACTTTTTATTGAAGTCCTTGTCATCTTAAAATCACATGCAATGATTGGCAATGGTTCAGTCTACATTTTCCATATTTCAAGCAGCAAACTGTTGTTTCAAGCTGTGTTACATTGTTTAGTTCTATATGTAGGGAATATCAACATCCAAAGTACCAGTCTGAGCGAAACTATAGCGGCCCACTGCAGTATCGACATAAAAAAGATTTAGGTAATCCAGTTTCTGTCAATGAATTTTTTGTTTGATGACAAGAGAAATCCGCAGCCCCTTTGGGTGCGCACAGGTGAAAACCCTCGCTCCTATGCAATAACTCGCAAACCACATAGGAGAGGTAACCCGCACCAGGCTCGACCCAGAAGGCAAACCCGGGGTTTCGAACTTGAGACCTCCAACATGAAAGTCCCAAGCTCAAACCATTGGGCCATCCCGAAGGGTTTTCTGACAATGAATTTAGACTGGGTGATGTTTAAAAAACACCAATTCTTCCAGATAATTATGAGTTCTGATTTTCTAGATAACTTAGTTTTGTTACCTTTCCTTCTGAGTCTCTGGATAATATGCTTGTCGCAGGAGAAGATTCATCAGAAGGAGCTATTGTCCAACGCAAGGGACGTTTTCAAGTCACATCAGCAGATCTAAGTCCCAAGGTATACATACTGTGCCTTCTTGCATTGATTGTCAGGTCAGCTATAATAATGCATTATGAAGGGGATTTTTCTTCAGTGACCAGATTTGGATTTTTCTTCAGTGACCAGATTCCGTCTCTAATACATGTGAATTAACACCAAATCATTCGCAGCATGAAAAAAAAACACCAAATCACTTGCAAATTAAACAGAGACACACAAATTCATTAGTGCCATACAGACATTGGTTTATTCAAAGATATGAACAAGAGTGGAAAAGGTTGCGTTAGGGGGTAAACTGTGGATAACTTTTAAACTGTTTTTTTTATGACCATGCTTTGTTTTCTTGTTACAAGCTTTCTGCATACCTGGGTAAGTGATTTTTACCTGAGCGGCAGCCCGTTTAATATAAGTGAAGCTGAATATTTGCCGCTTTGTTGATCACCAAGATAAAAAATTTAGCATTTAGTGGCAATATTTCCTTCCACATACTTGAGTTTATAGTGCATTTAGAGCGAATATTTGTTCATGATTTATCCATTTAAATCTTTTTTTTCTTTAAAAAAAAAGAAAAGAAAAATCCTTCCATGTTGGTTTGGGAGAAATTTGCTCTTTGGGTTTTGTTGGATTCTGAGCTTTTCTATTAAAGATCTTTAATTAAGAGGAGTTAACACTGTTTGCTTTGTGATGTGAGCATAAAATGATTTGTAAGGAAATTTGCTTTTTAGTTCTTTCAGCTGCTGTCTCCTTTCTATTTCCTTAATAAAGTTGCATTCTTCATGGGTTTCTTTAGTCTCACTTTCAGCATTGACTTCCCTGTTTGGTGTTTGTGAGAAATATAGTTCGCCGGTGAAAATCCTACCGGTGGCGCGTGACTGCGCGTGTAGCACTGTTTTCCGGTGGGGATGACTGGGCTTTGCTCGTCGGGAAATTCCGCAGCTAGTGGTGGTGTCAATTTTATGAAAACAATGAGGGAAAATAATAATTATCAGGACAGCAACTAGGTTACCAGATTTTTATTTTTTTTTGATTTCTTTTTTCTCACAATTTCTCTGATACCATGTGAGAAATATTGGAGAAAATATTATTGAATTGCGTATCTAAATTGTTGCATGAAGACCCTATTTATAGATACTACGTTGGAAACCTTTTCCAACTAGAATTCCTATTCTTATTCCTATTCTAATTCTTATTCTTATTCTAACAGTGTTCTCATGGTAAGTATCAAACTTTGCAATCTCTCTTTAGGTGATGGCTTCGTAACCATTGCCCTTTTTTTTCACTTGTTCAGGAACCTACAAGCTATTTCCTTAACCCAGTTCAGGGAGGTTCTACTAGTGCAATTAATCTAGGTCTAGCAGCTGCTTCACTACTTCCAACATTGCAATGCATTCTACAGCAGAATACTTTGCAAAGGGTAATTATTAATTCATCAAAATCTTGTGCATCACTGTTACCTGTTGCTTATCTGTTCTGCATCTTGTTAGGAGGAATTAGTGAAGCTGATCAAGTTCGCAGAGCGAGGATCTGGTAACTTATCCATTTACATTTGGTCATCACATTTGACCACTTCTGCTTTCGATGTTGAATGTTAAGTTGTTAACTATATTTATGTGTTGCCCCTGACTGGCTTGTTATTTGTATCTGTTTCAGTCAACCCCACAGACTTAGCTGAAGCTGGGACCAGTGATCTCCCGCAGGTAATTGTTTGTTTGTTATGTAATAAGATACGAGAAATGGTGCCACATTTTTTTGAAAATAATGTATTTTTAATTATTAAAAGAGATACGACCAAGTGATTAGGAAATAGAGTTTTGTAGGGTTCCATTAATATAATGTGAGAGTGGGGTTTATATCAAGTCTTTAACTCTTTTTCCATGAAGGTCTATAGGGATTAGAAGGTAGAACTTTTTTAGTAAAGGAAGGGGTTGGAGTTGGGGTGATGTGCCCTATCCCATGCTCAGTGTGTACAAGAAATGCATGGTGTATCTCTGAATTATGGCACGCTCCTGCATCCTCCTAACATCAGCACTTCCACTCTGCAGATGCCTGCTACTTCTGTTAGAGAGAGAGAACTGCAATCAATGGTCATTCAATTGCAACAAAGGTATGATATTCGTTGATAAATTTGAACTTGGTTGCTTGTTATGGTAAACTGAAGTCTCATCAATTTTCAGCATTGGAAGTCTTGTGGAAGAGT</genome_strand>
        <mrna_strand>GATGGTGAGAATCTGCGACAGAGTAGCTCCTTGCCACGTTCTGTTATTCCTGGGCGTAAAAAGTGGTTTAGTGGTTCACTGCTACAGGATAACGCTCTTTCACCCAAAAAAGTTGTTACTGATGGAGAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATATCAACATCCAAAGTACCAGTCTGAGCGAAACTATAGCGGCCCACTGCAGTATCGACATAAAAAAGATTTAG........................................................................................................................................................................................................................................................................................................................................................................GAGAAGATTCATCAGAAGGAGCTATTGTCCAACGCAAGGGACGTTTTCAAGTCACATCAGCAGATCTAAGTCCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCTACAAGCTATTTCCTTAACCCAGTTCAGGGAGGTTCTACTAGTGCAATTAATCTAGGTCTAGCAGCTGCTTCACTACTTCCAACATTGCAATGCATTCTACAGCAGAATACTTTGCAAAGG......................................................................GAGGAATTAGTGAAGCTGATCAAGTTCGCAGAGCGAGGATCTG...........................................................................................................................TCAACCCCACAGACTTAGCTGAAGCTGGGACCAGTGATCTCCCGCAG.........................................................................................................................................................................................................................................................................................................................................................ATGCCTGCTACTTCTGTTAGAGAGAGAGAACTGCAATCAATGGTCATTTAATTGCAACAAAG......................................................................CATTGGAAGTCTTGGGGAAGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E235706" ref_strand="+" ref_description="SGN-E235706 [cLED-15-B4]">
      <seq>ggaatatcaacatccaaagtaccagtctgagcgaaactatagcggcccactgcagtatcgacataaaaaagatttaggagaagattcatcagaaggagctattgtccaacgcaagggacgttttcaagtcacatcagcagatctaagtcccaaggaacctacaagctatttccttaacccagttcagggaggttctactagtgcaattaatctaggtctagcagctgcttcactacttncaacattgcaatgcattctacagcagaatactttgcaaagggaggaattagtgaagctgatcaagttcgcagagcgaggatctgtcaaccccacagacttagctgaagctgggaccagtgatcttccgcagatgcctgctacttctgttagagagagagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="+" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="59621" stop="62789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59921" g_stop="59997" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59998" i_stop="60357" i_length="360">
            <donor d_prob="0.611" d_score="1.00"/>
            <acceptor a_prob="0.798" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60358" g_stop="60434" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="154" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60435" i_stop="61704" i_length="1270">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61705" g_stop="61830" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="280" r_length="126" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61831" i_stop="61900" i_length="70">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61901" g_stop="61943" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="323" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61944" i_stop="62066" i_length="123">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62067" g_stop="62113" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="370" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="62114" i_stop="62458" i_length="345">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="62459" g_stop="62489" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="401" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="+" ref_id="SGN-E235706" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59921" e_stop="59997"/>
          <exon e_start="60358" e_stop="60434"/>
          <exon e_start="61705" e_stop="61830"/>
          <exon e_start="61901" e_stop="61943"/>
          <exon e_start="62067" e_stop="62113"/>
          <exon e_start="62459" e_stop="62489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATATCAACATCCAAAGTACCAGTCTGAGCGAAACTATAGCGGCCCACTGCAGTATCGACATAAAAAAGATTTAGGTAATCCAGTTTCTGTCAATGAATTTTTTGTTTGATGACAAGAGAAATCCGCAGCCCCTTTGGGTGCGCACAGGTGAAAACCCTCGCTCCTATGCAATAACTCGCAAACCACATAGGAGAGGTAACCCGCACCAGGCTCGACCCAGAAGGCAAACCCGGGGTTTCGAACTTGAGACCTCCAACATGAAAGTCCCAAGCTCAAACCATTGGGCCATCCCGAAGGGTTTTCTGACAATGAATTTAGACTGGGTGATGTTTAAAAAACACCAATTCTTCCAGATAATTATGAGTTCTGATTTTCTAGATAACTTAGTTTTGTTACCTTTCCTTCTGAGTCTCTGGATAATATGCTTGTCGCAGGAGAAGATTCATCAGAAGGAGCTATTGTCCAACGCAAGGGACGTTTTCAAGTCACATCAGCAGATCTAAGTCCCAAGGTATACATACTGTGCCTTCTTGCATTGATTGTCAGGTCAGCTATAATAATGCATTATGAAGGGGATTTTTCTTCAGTGACCAGATTTGGATTTTTCTTCAGTGACCAGATTCCGTCTCTAATACATGTGAATTAACACCAAATCATTCGCAGCATGAAAAAAAAACACCAAATCACTTGCAAATTAAACAGAGACACACAAATTCATTAGTGCCATACAGACATTGGTTTATTCAAAGATATGAACAAGAGTGGAAAAGGTTGCGTTAGGGGGTAAACTGTGGATAACTTTTAAACTGTTTTTTTTATGACCATGCTTTGTTTTCTTGTTACAAGCTTTCTGCATACCTGGGTAAGTGATTTTTACCTGAGCGGCAGCCCGTTTAATATAAGTGAAGCTGAATATTTGCCGCTTTGTTGATCACCAAGATAAAAAATTTAGCATTTAGTGGCAATATTTCCTTCCACATACTTGAGTTTATAGTGCATTTAGAGCGAATATTTGTTCATGATTTATCCATTTAAATCTTTTTTTTCTTTAAAAAAAAAGAAAAGAAAAATCCTTCCATGTTGGTTTGGGAGAAATTTGCTCTTTGGGTTTTGTTGGATTCTGAGCTTTTCTATTAAAGATCTTTAATTAAGAGGAGTTAACACTGTTTGCTTTGTGATGTGAGCATAAAATGATTTGTAAGGAAATTTGCTTTTTAGTTCTTTCAGCTGCTGTCTCCTTTCTATTTCCTTAATAAAGTTGCATTCTTCATGGGTTTCTTTAGTCTCACTTTCAGCATTGACTTCCCTGTTTGGTGTTTGTGAGAAATATAGTTCGCCGGTGAAAATCCTACCGGTGGCGCGTGACTGCGCGTGTAGCACTGTTTTCCGGTGGGGATGACTGGGCTTTGCTCGTCGGGAAATTCCGCAGCTAGTGGTGGTGTCAATTTTATGAAAACAATGAGGGAAAATAATAATTATCAGGACAGCAACTAGGTTACCAGATTTTTATTTTTTTTTGATTTCTTTTTTCTCACAATTTCTCTGATACCATGTGAGAAATATTGGAGAAAATATTATTGAATTGCGTATCTAAATTGTTGCATGAAGACCCTATTTATAGATACTACGTTGGAAACCTTTTCCAACTAGAATTCCTATTCTTATTCCTATTCTAATTCTTATTCTTATTCTAACAGTGTTCTCATGGTAAGTATCAAACTTTGCAATCTCTCTTTAGGTGATGGCTTCGTAACCATTGCCCTTTTTTTTCACTTGTTCAGGAACCTACAAGCTATTTCCTTAACCCAGTTCAGGGAGGTTCTACTAGTGCAATTAATCTAGGTCTAGCAGCTGCTTCACTACTTCCAACATTGCAATGCATTCTACAGCAGAATACTTTGCAAAGGGTAATTATTAATTCATCAAAATCTTGTGCATCACTGTTACCTGTTGCTTATCTGTTCTGCATCTTGTTAGGAGGAATTAGTGAAGCTGATCAAGTTCGCAGAGCGAGGATCTGGTAACTTATCCATTTACATTTGGTCATCACATTTGACCACTTCTGCTTTCGATGTTGAATGTTAAGTTGTTAACTATATTTATGTGTTGCCCCTGACTGGCTTGTTATTTGTATCTGTTTCAGTCAACCCCACAGACTTAGCTGAAGCTGGGACCAGTGATCTCCCGCAGGTAATTGTTTGTTTGTTATGTAATAAGATACGAGAAATGGTGCCACATTTTTTTGAAAATAATGTATTTTTAATTATTAAAAGAGATACGACCAAGTGATTAGGAAATAGAGTTTTGTAGGGTTCCATTAATATAATGTGAGAGTGGGGTTTATATCAAGTCTTTAACTCTTTTTCCATGAAGGTCTATAGGGATTAGAAGGTAGAACTTTTTTAGTAAAGGAAGGGGTTGGAGTTGGGGTGATGTGCCCTATCCCATGCTCAGTGTGTACAAGAAATGCATGGTGTATCTCTGAATTATGGCACGCTCCTGCATCCTCCTAACATCAGCACTTCCACTCTGCAGATGCCTGCTACTTCTGTTAGAGAGAGAGAAC</genome_strand>
        <mrna_strand>GGAATATCAACATCCAAAGTACCAGTCTGAGCGAAACTATAGCGGCCCACTGCAGTATCGACATAAAAAAGATTTAG........................................................................................................................................................................................................................................................................................................................................................................GAGAAGATTCATCAGAAGGAGCTATTGTCCAACGCAAGGGACGTTTTCAAGTCACATCAGCAGATCTAAGTCCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCTACAAGCTATTTCCTTAACCCAGTTCAGGGAGGTTCTACTAGTGCAATTAATCTAGGTCTAGCAGCTGCTTCACTACTTNCAACATTGCAATGCATTCTACAGCAGAATACTTTGCAAAGG......................................................................GAGGAATTAGTGAAGCTGATCAAGTTCGCAGAGCGAGGATCTG...........................................................................................................................TCAACCCCACAGACTTAGCTGAAGCTGGGACCAGTGATCTTCCGCAG.........................................................................................................................................................................................................................................................................................................................................................ATGCCTGCTACTTCTGTTAGAGAGAGAGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E346354" ref_strand="+" ref_description="SGN-E346354 [cTOF-23-E15]">
      <seq>tattgtccaacgcaagggacgttttcaagtcacatcagcagatctaagtcccaaggaacctacaagctatttccttaacccagttcagggaggttctactagtgcaattaatctaggtctagcagctgcttcactacttccaacattgcaatgcattctacagcagaatactttgcaaagggaggaattagtgaagctgatcaagttcgcagagcgaggatctgtcaaccccacagacttagctgaagctgggaccagtgatctcccgcagggattagaaggtagaacttttttagtaaaggaaggggttggagttggggtgatgtgccctatcccatgctcagtgtgtacaagaaatgcatggtgtatctctgaattatggcacgctcctgcatcctcctaacatcagcacttccactctgcagatgcctgctacttctgttagagagagagaactgcaatcaatggtcattcaattgcaacaaagcattggaagtcttgtggaagagttgcagagacaaaagatgaaaaatgttcagttggaaaagaaattgaatcgctgataaaaactagaggatatgaaggctacactacatggttggttaagttactacccatgggttgtgctggggcacatcgttaagttacttggcgagtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="+" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="60080" stop="63248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60380" g_stop="60434" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60435" i_stop="61704" i_length="1270">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61705" g_stop="61830" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="181" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61831" i_stop="61900" i_length="70">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61901" g_stop="61943" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="224" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61944" i_stop="62066" i_length="123">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62067" g_stop="62113" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="271" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="62114" i_stop="62304" i_length="191">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.377" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62305" g_stop="62520" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="487" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="62521" i_stop="62590" i_length="70">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="62591" g_stop="62642" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="539" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="62643" i_stop="62829" i_length="187">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="62830" g_stop="62948" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="659" r_length="120" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="+" ref_id="SGN-E346354" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60380" e_stop="60434"/>
          <exon e_start="61705" e_stop="61830"/>
          <exon e_start="61901" e_stop="61943"/>
          <exon e_start="62067" e_stop="62113"/>
          <exon e_start="62305" e_stop="62520"/>
          <exon e_start="62591" e_stop="62642"/>
          <exon e_start="62830" e_stop="62948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTGTCCAACGCAAGGGACGTTTTCAAGTCACATCAGCAGATCTAAGTCCCAAGGTATACATACTGTGCCTTCTTGCATTGATTGTCAGGTCAGCTATAATAATGCATTATGAAGGGGATTTTTCTTCAGTGACCAGATTTGGATTTTTCTTCAGTGACCAGATTCCGTCTCTAATACATGTGAATTAACACCAAATCATTCGCAGCATGAAAAAAAAACACCAAATCACTTGCAAATTAAACAGAGACACACAAATTCATTAGTGCCATACAGACATTGGTTTATTCAAAGATATGAACAAGAGTGGAAAAGGTTGCGTTAGGGGGTAAACTGTGGATAACTTTTAAACTGTTTTTTTTATGACCATGCTTTGTTTTCTTGTTACAAGCTTTCTGCATACCTGGGTAAGTGATTTTTACCTGAGCGGCAGCCCGTTTAATATAAGTGAAGCTGAATATTTGCCGCTTTGTTGATCACCAAGATAAAAAATTTAGCATTTAGTGGCAATATTTCCTTCCACATACTTGAGTTTATAGTGCATTTAGAGCGAATATTTGTTCATGATTTATCCATTTAAATCTTTTTTTTCTTTAAAAAAAAAGAAAAGAAAAATCCTTCCATGTTGGTTTGGGAGAAATTTGCTCTTTGGGTTTTGTTGGATTCTGAGCTTTTCTATTAAAGATCTTTAATTAAGAGGAGTTAACACTGTTTGCTTTGTGATGTGAGCATAAAATGATTTGTAAGGAAATTTGCTTTTTAGTTCTTTCAGCTGCTGTCTCCTTTCTATTTCCTTAATAAAGTTGCATTCTTCATGGGTTTCTTTAGTCTCACTTTCAGCATTGACTTCCCTGTTTGGTGTTTGTGAGAAATATAGTTCGCCGGTGAAAATCCTACCGGTGGCGCGTGACTGCGCGTGTAGCACTGTTTTCCGGTGGGGATGACTGGGCTTTGCTCGTCGGGAAATTCCGCAGCTAGTGGTGGTGTCAATTTTATGAAAACAATGAGGGAAAATAATAATTATCAGGACAGCAACTAGGTTACCAGATTTTTATTTTTTTTTGATTTCTTTTTTCTCACAATTTCTCTGATACCATGTGAGAAATATTGGAGAAAATATTATTGAATTGCGTATCTAAATTGTTGCATGAAGACCCTATTTATAGATACTACGTTGGAAACCTTTTCCAACTAGAATTCCTATTCTTATTCCTATTCTAATTCTTATTCTTATTCTAACAGTGTTCTCATGGTAAGTATCAAACTTTGCAATCTCTCTTTAGGTGATGGCTTCGTAACCATTGCCCTTTTTTTTCACTTGTTCAGGAACCTACAAGCTATTTCCTTAACCCAGTTCAGGGAGGTTCTACTAGTGCAATTAATCTAGGTCTAGCAGCTGCTTCACTACTTCCAACATTGCAATGCATTCTACAGCAGAATACTTTGCAAAGGGTAATTATTAATTCATCAAAATCTTGTGCATCACTGTTACCTGTTGCTTATCTGTTCTGCATCTTGTTAGGAGGAATTAGTGAAGCTGATCAAGTTCGCAGAGCGAGGATCTGGTAACTTATCCATTTACATTTGGTCATCACATTTGACCACTTCTGCTTTCGATGTTGAATGTTAAGTTGTTAACTATATTTATGTGTTGCCCCTGACTGGCTTGTTATTTGTATCTGTTTCAGTCAACCCCACAGACTTAGCTGAAGCTGGGACCAGTGATCTCCCGCAGGTAATTGTTTGTTTGTTATGTAATAAGATACGAGAAATGGTGCCACATTTTTTTGAAAATAATGTATTTTTAATTATTAAAAGAGATACGACCAAGTGATTAGGAAATAGAGTTTTGTAGGGTTCCATTAATATAATGTGAGAGTGGGGTTTATATCAAGTCTTTAACTCTTTTTCCATGAAGGTCTATAGGGATTAGAAGGTAGAACTTTTTTAGTAAAGGAAGGGGTTGGAGTTGGGGTGATGTGCCCTATCCCATGCTCAGTGTGTACAAGAAATGCATGGTGTATCTCTGAATTATGGCACGCTCCTGCATCCTCCTAACATCAGCACTTCCACTCTGCAGATGCCTGCTACTTCTGTTAGAGAGAGAGAACTGCAATCAATGGTCATTCAATTGCAACAAAGGTATGATATTCGTTGATAAATTTGAACTTGGTTGCTTGTTATGGTAAACTGAAGTCTCATCAATTTTCAGCATTGGAAGTCTTGTGGAAGAGTTGCAGAGACAAAAGATGAAAAATGTTCAGGTATGTGCTGTACAATTGTGGGGGAAGTATTTTCCTTTATTTTCTTCTAAAGATATGATTTCTTTAGAACAAAGTTGAAAACCGAAAATGTAAATGCAGTGCTGCTTTATTCTTGGAATGTTATTATAAAATTTCCAAGAAACCATTGATAACATGTTTTTCTAAAGCTGTCATTTCTGGCTTGCAGTTGGAAAAGAAATTGAATCGCTGATAAAAACTAGAGGATATGAAGGCTACACTACATGGTTGGTTAAGTTACTACCCAT-GGTTGTGCTGGGGCACATCGTTAAGTTACTTGGCGAGTGG</genome_strand>
        <mrna_strand>TATTGTCCAACGCAAGGGACGTTTTCAAGTCACATCAGCAGATCTAAGTCCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCTACAAGCTATTTCCTTAACCCAGTTCAGGGAGGTTCTACTAGTGCAATTAATCTAGGTCTAGCAGCTGCTTCACTACTTCCAACATTGCAATGCATTCTACAGCAGAATACTTTGCAAAGG......................................................................GAGGAATTAGTGAAGCTGATCAAGTTCGCAGAGCGAGGATCTG...........................................................................................................................TCAACCCCACAGACTTAGCTGAAGCTGGGACCAGTGATCTCCCGCAG...............................................................................................................................................................................................GGATTAGAAGGTAGAACTTTTTTAGTAAAGGAAGGGGTTGGAGTTGGGGTGATGTGCCCTATCCCATGCTCAGTGTGTACAAGAAATGCATGGTGTATCTCTGAATTATGGCACGCTCCTGCATCCTCCTAACATCAGCACTTCCACTCTGCAGATGCCTGCTACTTCTGTTAGAGAGAGAGAACTGCAATCAATGGTCATTCAATTGCAACAAAG......................................................................CATTGGAAGTCTTGTGGAAGAGTTGCAGAGACAAAAGATGAAAAATGTTCAG...........................................................................................................................................................................................TTGGAAAAGAAATTGAATCGCTGATAAAAACTAGAGGATATGAAGGCTACACTACATGGTTGGTTAAGTTACTACCCATGGGTTGTGCTGGGGCACATCGTTAAGTTACTTGGCGAGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E411432" ref_strand="-" ref_description="SGN-E411432 [STM-14-N17]">
      <seq>attgcaatgcattctacagcagaatactttgcaaagggaggaattagtgaagctgatcaagttcgcagagcgaggatctgtcaaccctatagacttggctgaagctgggaccagtgatcttctgcagatgcctgctacttctgttagggagagagaactgcaatcaatggtcattcaattgcaacaaagcattggaagtcttgtggaagagttgcagagacaaaagatgaaaaatgttcagttggaaaagaaattgaatcgctgataaaaactagaggatatgaaggctacactacatggttggtgaagttactacacatgcttgtgctggggcacatcgttaagttacttggcgagtgggttgttgtattttttgtgtaccatatgtgtgaatgtaaagtaggcacccaaattttgagatgctattcattgtcagaatcttgattatctattgtagtaacacaattgggtattgtaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="+" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="61494" stop="63365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61794" g_stop="61830" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61831" i_stop="61900" i_length="70">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61901" g_stop="61943" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="80" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61944" i_stop="62066" i_length="123">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.89"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62067" g_stop="62113" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="127" r_length="47" r_score="0.894"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62114" i_stop="62458" i_length="345">
            <donor d_prob="0.998" d_score="0.89"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62459" g_stop="62520" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="189" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="62521" i_stop="62590" i_length="70">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62591" g_stop="62642" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="241" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="62643" i_stop="62829" i_length="187">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="62830" g_stop="63067" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="479" r_length="238" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="+" ref_id="SGN-E411432" ref_strand="-">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E411432" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="61794" e_stop="61830"/>
          <exon e_start="61901" e_stop="61943"/>
          <exon e_start="62067" e_stop="62113"/>
          <exon e_start="62459" e_stop="62520"/>
          <exon e_start="62591" e_stop="62642"/>
          <exon e_start="62830" e_stop="63067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGCAATGCATTCTACAGCAGAATACTTTGCAAAGGGTAATTATTAATTCATCAAAATCTTGTGCATCACTGTTACCTGTTGCTTATCTGTTCTGCATCTTGTTAGGAGGAATTAGTGAAGCTGATCAAGTTCGCAGAGCGAGGATCTGGTAACTTATCCATTTACATTTGGTCATCACATTTGACCACTTCTGCTTTCGATGTTGAATGTTAAGTTGTTAACTATATTTATGTGTTGCCCCTGACTGGCTTGTTATTTGTATCTGTTTCAGTCAACCCCACAGACTTAGCTGAAGCTGGGACCAGTGATCTCCCGCAGGTAATTGTTTGTTTGTTATGTAATAAGATACGAGAAATGGTGCCACATTTTTTTGAAAATAATGTATTTTTAATTATTAAAAGAGATACGACCAAGTGATTAGGAAATAGAGTTTTGTAGGGTTCCATTAATATAATGTGAGAGTGGGGTTTATATCAAGTCTTTAACTCTTTTTCCATGAAGGTCTATAGGGATTAGAAGGTAGAACTTTTTTAGTAAAGGAAGGGGTTGGAGTTGGGGTGATGTGCCCTATCCCATGCTCAGTGTGTACAAGAAATGCATGGTGTATCTCTGAATTATGGCACGCTCCTGCATCCTCCTAACATCAGCACTTCCACTCTGCAGATGCCTGCTACTTCTGTTAGAGAGAGAGAACTGCAATCAATGGTCATTCAATTGCAACAAAGGTATGATATTCGTTGATAAATTTGAACTTGGTTGCTTGTTATGGTAAACTGAAGTCTCATCAATTTTCAGCATTGGAAGTCTTGTGGAAGAGTTGCAGAGACAAAAGATGAAAAATGTTCAGGTATGTGCTGTACAATTGTGGGGGAAGTATTTTCCTTTATTTTCTTCTAAAGATATGATTTCTTTAGAACAAAGTTGAAAACCGAAAATGTAAATGCAGTGCTGCTTTATTCTTGGAATGTTATTATAAAATTTCCAAGAAACCATTGATAACATGTTTTTCTAAAGCTGTCATTTCTGGCTTGCAGTTGGAAAAGAAATTGAATCGCTGATAAAAACTAGAGGATATGAAGGCTACACTACATGGTTGGTTAAGTTACTACCCATGGTTGTGCTGGGGCACATCGTTAAGTTACTTGGCGAGTGGGTGGTTGTATTTTTTGTGTACCATATGTGTGAATGTTAAGTAGGCACCCAAATTTTGAGATGCTATTCATTGTCAGAATCTTGATTATCTATTGTAATATACCAATTGGGTATTGTATT</genome_strand>
        <mrna_strand>ATTGCAATGCATTCTACAGCAGAATACTTTGCAAAGG......................................................................GAGGAATTAGTGAAGCTGATCAAGTTCGCAGAGCGAGGATCTG...........................................................................................................................TCAACCCTATAGACTTGGCTGAAGCTGGGACCAGTGATCTTCTGCAG.........................................................................................................................................................................................................................................................................................................................................................ATGCCTGCTACTTCTGTTAGGGAGAGAGAACTGCAATCAATGGTCATTCAATTGCAACAAAG......................................................................CATTGGAAGTCTTGTGGAAGAGTTGCAGAGACAAAAGATGAAAAATGTTCAG...........................................................................................................................................................................................TTGGAAAAGAAATTGAATCGCTGATAAAAACTAGAGGATATGAAGGCTACACTACATGGTTGGTGAAGTTACTACACATGCTTGTGCTGGGGCACATCGTTAAGTTACTTGGCGAGTGGGTTGTTGTATTTTTTGTGTACCATATGTGTGAATGTAAAGTAGGCACCCAAATTTTGAGATGCTATTCATTGTCAGAATCTTGATTATCTATTGTAGTAACACAATTGGGTATTGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E606067" ref_strand="+" ref_description="SGN-E606067 [22002]">
      <seq>catggtcattcaattgcaacaaagcattggaagtcttgtggaagagttgcagagacaaaagatgaaaaatgttcagttggaaaagaaattgaatcgctgataaaaactaaggatatgaaggctacactacatggttggtgatgttactacacatgcttgtgctggggcacatcgttaagttacttggcgagtgggttgttgtattttttgtgtaccatatgtgtgaatgtaaagtaggcacccaaattttgagatgctattcattgtcagaatcttgattatctattgtaatataccaattgggtattgtatttaagttgttcttcaatattaattgaaattctaggagcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="+" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="62198" stop="63412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62497" g_stop="62520" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62521" i_stop="62590" i_length="70">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62591" g_stop="62642" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="76" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62643" i_stop="62829" i_length="187">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62830" g_stop="63114" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="360" r_length="284" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="+" ref_id="SGN-E606067" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E606067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62497" e_stop="62520"/>
          <exon e_start="62591" e_stop="62642"/>
          <exon e_start="62830" e_stop="63114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGTCATTCAATTGCAACAAAGGTATGATATTCGTTGATAAATTTGAACTTGGTTGCTTGTTATGGTAAACTGAAGTCTCATCAATTTTCAGCATTGGAAGTCTTGTGGAAGAGTTGCAGAGACAAAAGATGAAAAATGTTCAGGTATGTGCTGTACAATTGTGGGGGAAGTATTTTCCTTTATTTTCTTCTAAAGATATGATTTCTTTAGAACAAAGTTGAAAACCGAAAATGTAAATGCAGTGCTGCTTTATTCTTGGAATGTTATTATAAAATTTCCAAGAAACCATTGATAACATGTTTTTCTAAAGCTGTCATTTCTGGCTTGCAGTTGGAAAAGAAATTGAATCGCTGATAAAAACTAGAGGATATGAAGGCTACACTACATGGTTGGTTAAGTTACTACCCATGGTTGTGCTGGGGCACATCGTTAAGTTACTTGGCGAGTGGGTGGTTGTATTTTTTGTGTACCATATGTGTGAATGTTAAGTAGGCACCCAAATTTTGAGATGCTATTCATTGTCAGAATCTTGATTATCTATTGTAATATACCAATTGGGTATTGTATTTAAGTTGTCCTTCAATATTAATTGAAATTCTAGGAGCAAAAAAAATG</genome_strand>
        <mrna_strand>CATGGTCATTCAATTGCAACAAAG......................................................................CATTGGAAGTCTTGTGGAAGAGTTGCAGAGACAAAAGATGAAAAATGTTCAG...........................................................................................................................................................................................TTGGAAAAGAAATTGAATCGCTGATAAAAACTA-AGGATATGAAGGCTACACTACATGGTTGGTGATGTTACTACACATGCTTGTGCTGGGGCACATCGTTAAGTTACTTGGCGAGTGGGTTGTTGTATTTTTTGTGTACCATATGTGTGAATGTAAAGTAGGCACCCAAATTTTGAGATGCTATTCATTGTCAGAATCTTGATTATCTATTGTAATATACCAATTGGGTATTGTATTTAAGTTGTTCTTCAATATTAATTGAAATTCTAGGAGCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E406633" ref_strand="+" ref_description="SGN-E406633 [PPI-4-O10]">
      <seq>cagagacaaaagatgaaaaatgttcagttggaaaagaaattgaatcgctgataaaaactagaggatatgaaggctacactacatggttggtgatgttactacacatgcttgtgctggggcacatcgttaagttacttggcgagtgggttgttgtattttttgtgtaccatatgtgtgaatgtaaagtaggcacccaaattttgagatgctattcattgtcagaatcttgattatctattgtaatataccaattgggtattgtatttaagttgttcttcaatattaattgaaattctaggagcaaaacaaatgcagcttgtgtaaatcacccttgcgaaacccatacccttgttccgaaataaacctaataaacctctatggaggagtttggtccgatanaaacaataacaataacaatatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="+" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="62316" stop="63473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62616" g_stop="62642" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62643" i_stop="62829" i_length="187">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62830" g_stop="63196" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="390" r_length="363" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="+" ref_id="SGN-E406633" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E406633" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62616" e_stop="62642"/>
          <exon e_start="62830" e_stop="63196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGACAAAAGATGAAAAATGTTCAGGTATGTGCTGTACAATTGTGGGGGAAGTATTTTCCTTTATTTTCTTCTAAAGATATGATTTCTTTAGAACAAAGTTGAAAACCGAAAATGTAAATGCAGTGCTGCTTTATTCTTGGAATGTTATTATAAAATTTCCAAGAAACCATTGATAACATGTTTTTCTAAAGCTGTCATTTCTGGCTTGCAGTTGGAAAAGAAATTGAATCGCTGATAAAAACTAGAGGATATGAAGGCTACACTACATGGTTGGTTAAGTTACTACCCATGGTTGTGCTGGGGCACATCGTTAAGTTACTTGGCGAGTGGGTGGTTGTATTTTTTGTGTACCATATGTGTGAATGTTAAGTAGGCACCCAAATTTTGAGATGCTATTCATTGTCAGAATCTTGATTATCTATTGTAATATACCAATTGGGTATTGTATTTAAGTTGTCCTTCAATATTAATTGAAATTCTAGGAGCAAAAAAAATGCAGCTTGTGTAAATCACCCTTGCGAAACCCAGAACCTTGTTCCGAAATAAACCTAATAATAAACCTCTTAAGGAGGAGTTTG</genome_strand>
        <mrna_strand>CAGAGACAAAAGATGAAAAATGTTCAG...........................................................................................................................................................................................TTGGAAAAGAAATTGAATCGCTGATAAAAACTAGAGGATATGAAGGCTACACTACATGGTTGGTGATGTTACTACACATGCTTGTGCTGGGGCACATCGTTAAGTTACTTGGCGAGTGGGTTGTTGTATTTTTTGTGTACCATATGTGTGAATGTAAAGTAGGCACCCAAATTTTGAGATGCTATTCATTGTCAGAATCTTGATTATCTATTGTAATATACCAATTGGGTATTGTATTTAAGTTGTTCTTCAATATTAATTGAAATTCTAGGAGCAAAACAAATGCAGCTTGTGTAAATCACCCTTGCGAAACCCATACCCTTGTTCCGAAATAAACC---TAATAAACCTC-TATGGAGGAGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E350834" ref_strand="+" ref_description="SGN-E350834 [cTOS-7-I5]">
      <seq>gcagattattgaacacataagtaatgccggatcttctaggtctttggttttatctcttggactacgcgaccattctctgcccactttgaagggtatcgtttcggctgtcactgagaactgcctttggtgacctaggctcttgtcaattttggattgttcatagttgttatagccagaagagagaaacttaatgattgattcagtcctgtgaagtgtttattgcttacttttcctcaatgatgttctattattatcagcaagacttctctagactgtaaaaaaagtgtttctattggtgtccttattgagagaggggctttatgactcactctagaaatgcatttattgtgatcattcgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="64999" stop="63850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64699" g_stop="64679" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64678" i_stop="64572" i_length="107">
            <donor d_prob="0.713" d_score="0.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64571" g_stop="64514" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="79" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64513" i_stop="64430" i_length="84">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.845" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64429" g_stop="64150" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="359" r_length="280" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E350834" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64699" e_stop="64679"/>
          <exon e_start="64571" e_stop="64514"/>
          <exon e_start="64429" e_stop="64150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGATTATTGAACACATAAGGTACTTGTGGGAACTGAAATTTATTAAGATTTCGACTCTCTGTGAGGGAAGATAGATGAATCAGATATTGATATTTCTCTACTAATGCAAACCATGTTTATATGCAGTAATGCCGGATCTTCTAGGTCTTTGGTTTTATCTCTTGGACTACGCGACCATTCTCTGGTTAGTAACATGGAGATATTTTACTCTCATTTGCACATAGAAGTGTTTCTTCCTTTTAATTCGTTGCATTATTTTTATACGCAGCCCACTTTGAAGGGTATCGTTTCGGCTGTCACTGAGAACTGCCTTTGGTGACCTAGGCTCTTGTCAATTTTGGATTGTTCATAGTTGTTATAGCCAGAAGAGAGAAACTTAATGATTGATTCAGTCCTGTGAAGTGTTTATTGCTTACTTTTCCTCAATGATGTTCTATTATTATCAGCAAGACTTCTCTAGACTGTAAAAAAAGTGTTTCTATTGGTGTCCTTATTGAGAGAGGGGCTTTATGACTCACTCTAGAAATGCATTTATTGTGATCATTCGA</genome_strand>
        <mrna_strand>GCAGATTATTGAACACATAAG...........................................................................................................TAATGCCGGATCTTCTAGGTCTTTGGTTTTATCTCTTGGACTACGCGACCATTCTCTG....................................................................................CCCACTTTGAAGGGTATCGTTTCGGCTGTCACTGAGAACTGCCTTTGGTGACCTAGGCTCTTGTCAATTTTGGATTGTTCATAGTTGTTATAGCCAGAAGAGAGAAACTTAATGATTGATTCAGTCCTGTGAAGTGTTTATTGCTTACTTTTCCTCAATGATGTTCTATTATTATCAGCAAGACTTCTCTAGACTGTAAAAAAAGTGTTTCTATTGGTGTCCTTATTGAGAGAGGGGCTTTATGACTCACTCTAGAAATGCATTTATTGTGATCATTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E222295" ref_strand="+" ref_description="SGN-E222295 [cLEL-16-K4](-)">
      <seq>ggtgtcgatccatccaacctttagtgtttctgtattactgggcaaacgcgaatagcccatgctggttgcatgcgctcggcagattattgaacacataagtaatgccggatcttctaggtctttggttttatctcttggactacgcgaccattctctgcccactttgaagggtatcgtttcggctgtcactgagaactgcctttggtgacctaggctcttgtcaattttggattgttcatagttgttatagccagaagagagaaacttaatgattgattcagtcctgtgaagtgtttattgcttacttttcctcaatgatgttctattattatcagcaagacttctctagactgtaaaaaaagtgtttctattggtgtccttattgagagaggggctttatgactcactctagaaatgcatttattgtgatcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="65158" stop="63855"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64858" g_stop="64804" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64803" i_stop="64723" i_length="81">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64722" g_stop="64679" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="99" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64678" i_stop="64572" i_length="107">
            <donor d_prob="0.713" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64571" g_stop="64514" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="157" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64513" i_stop="64430" i_length="84">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.845" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64429" g_stop="64156" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="431" r_length="274" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="432" polyA_stop="449"/>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E222295" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64858" e_stop="64804"/>
          <exon e_start="64722" e_stop="64679"/>
          <exon e_start="64571" e_stop="64514"/>
          <exon e_start="64429" e_stop="64156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGTCGATCCATCCAACCTTTAGTGTTTCTGTATTACTGGGCAAACGCGATGAGGTAATTGACAATATACTGCAGTAATTTCATGTCGTTTTGTGTATACTTATAAACTTGATAAAACTGCATTTTGCTCTGCAGCCCATGCTGGTTGCATGCGCTCGGCAGATTATTGAACACATAAGGTACTTGTGGGAACTGAAATTTATTAAGATTTCGACTCTCTGTGAGGGAAGATAGATGAATCAGATATTGATATTTCTCTACTAATGCAAACCATGTTTATATGCAGTAATGCCGGATCTTCTAGGTCTTTGGTTTTATCTCTTGGACTACGCGACCATTCTCTGGTTAGTAACATGGAGATATTTTACTCTCATTTGCACATAGAAGTGTTTCTTCCTTTTAATTCGTTGCATTATTTTTATACGCAGCCCACTTTGAAGGGTATCGTTTCGGCTGTCACTGAGAACTGCCTTTGGTGACCTAGGCTCTTGTCAATTTTGGATTGTTCATAGTTGTTATAGCCAGAAGAGAGAAACTTAATGATTGATTCAGTCCTGTGAAGTGTTTATTGCTTACTTTTCCTCAATGATGTTCTATTATTATCAGCAAGACTTCTCTAGACTGTAAAAAAAGTGTTTCTATTGGTGTCCTTATTGAGAGAGGGGCTTTATGACTCACTCTAGAAATGCATTTATTGTGATC</genome_strand>
        <mrna_strand>GGTGTCGATCCATCCAACCTTTAGTGTTTCTGTATTACTGGGCAAACGCGAATAG.................................................................................CCCATGCTGGTTGCATGCGCTCGGCAGATTATTGAACACATAAG...........................................................................................................TAATGCCGGATCTTCTAGGTCTTTGGTTTTATCTCTTGGACTACGCGACCATTCTCTG....................................................................................CCCACTTTGAAGGGTATCGTTTCGGCTGTCACTGAGAACTGCCTTTGGTGACCTAGGCTCTTGTCAATTTTGGATTGTTCATAGTTGTTATAGCCAGAAGAGAGAAACTTAATGATTGATTCAGTCCTGTGAAGTGTTTATTGCTTACTTTTCCTCAATGATGTTCTATTATTATCAGCAAGACTTCTCTAGACTGTAAAAAAAGTGTTTCTATTGGTGTCCTTATTGAGAGAGGGGCTTTATGACTCACTCTAGAAATGCATTTATTGTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E222386" ref_strand="+" ref_description="SGN-E222386 [cLEL-16-K6](-)">
      <seq>gtgtcgatccatccaacctttagtgtttctgtattactgggcaaacgcgatgagcccatgctggttgcatgcgctcggcagattattgaacacataagtaatgccggatcttctaggtctttggttttatctcttggactacgcgaccattctctgcccactttgaagggtatcgtttcggctgtcactgagaactgcctttggtgacctaggctcttgtcaattttggattgttcatagttgttatagccagaagagagaaacttaatgattgattcagtcctgtgaagtgtttattgcttacttttcctcaatgatgttctattattatcagcaagacttctctagactgtaaaaaaagtgtttctattggtgtccttattgagagaggggctttatgactcactctagaaatgcatttattgtgatcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="65157" stop="63855"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64857" g_stop="64804" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64803" i_stop="64723" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64722" g_stop="64679" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="98" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64678" i_stop="64572" i_length="107">
            <donor d_prob="0.713" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64571" g_stop="64514" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="156" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64513" i_stop="64430" i_length="84">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.845" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64429" g_stop="64156" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="430" r_length="274" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="431" polyA_stop="448"/>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E222386" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64857" e_stop="64804"/>
          <exon e_start="64722" e_stop="64679"/>
          <exon e_start="64571" e_stop="64514"/>
          <exon e_start="64429" e_stop="64156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTCGATCCATCCAACCTTTAGTGTTTCTGTATTACTGGGCAAACGCGATGAGGTAATTGACAATATACTGCAGTAATTTCATGTCGTTTTGTGTATACTTATAAACTTGATAAAACTGCATTTTGCTCTGCAGCCCATGCTGGTTGCATGCGCTCGGCAGATTATTGAACACATAAGGTACTTGTGGGAACTGAAATTTATTAAGATTTCGACTCTCTGTGAGGGAAGATAGATGAATCAGATATTGATATTTCTCTACTAATGCAAACCATGTTTATATGCAGTAATGCCGGATCTTCTAGGTCTTTGGTTTTATCTCTTGGACTACGCGACCATTCTCTGGTTAGTAACATGGAGATATTTTACTCTCATTTGCACATAGAAGTGTTTCTTCCTTTTAATTCGTTGCATTATTTTTATACGCAGCCCACTTTGAAGGGTATCGTTTCGGCTGTCACTGAGAACTGCCTTTGGTGACCTAGGCTCTTGTCAATTTTGGATTGTTCATAGTTGTTATAGCCAGAAGAGAGAAACTTAATGATTGATTCAGTCCTGTGAAGTGTTTATTGCTTACTTTTCCTCAATGATGTTCTATTATTATCAGCAAGACTTCTCTAGACTGTAAAAAAAGTGTTTCTATTGGTGTCCTTATTGAGAGAGGGGCTTTATGACTCACTCTAGAAATGCATTTATTGTGATC</genome_strand>
        <mrna_strand>GTGTCGATCCATCCAACCTTTAGTGTTTCTGTATTACTGGGCAAACGCGATGAG.................................................................................CCCATGCTGGTTGCATGCGCTCGGCAGATTATTGAACACATAAG...........................................................................................................TAATGCCGGATCTTCTAGGTCTTTGGTTTTATCTCTTGGACTACGCGACCATTCTCTG....................................................................................CCCACTTTGAAGGGTATCGTTTCGGCTGTCACTGAGAACTGCCTTTGGTGACCTAGGCTCTTGTCAATTTTGGATTGTTCATAGTTGTTATAGCCAGAAGAGAGAAACTTAATGATTGATTCAGTCCTGTGAAGTGTTTATTGCTTACTTTTCCTCAATGATGTTCTATTATTATCAGCAAGACTTCTCTAGACTGTAAAAAAAGTGTTTCTATTGGTGTCCTTATTGAGAGAGGGGCTTTATGACTCACTCTAGAAATGCATTTATTGTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E326459" ref_strand="+" ref_description="SGN-E326459 [cTOC-14-H24]">
      <seq>tccgtcattcaaaacaaaatagagagatgtggacctgggatgtataagtaattctaaagtaatacttaattttcgaggaaagtattatttttcatcattttaaatcgattcttatttttttaatatattattctgattattatgattgacggagcttgagtgcgtcattataggctatattgaaagctttatgtcccacactcgcaccatgtccatgtcaatttcgatgtacactacttcttctagaaaaaatgtcagccatttcatatgtggcccattccaacaccagtagtctggtcaaatatggccaacattcctaatttcctattaagtatagtgtagaagtctcattaattattgactttattggcgcttttggtagcgattttaattagctatgctaccaagacaaaatgaaccattgtctgatattttagtcatttgttaagcacttgcctttctgctacttagttatatcgtccctgcggtttatttttgaattgattgttattcttttatgtagaaatcaatggttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="+" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="65857" stop="66992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66157" g_stop="66692" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="537" r_length="537" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="+" ref_id="SGN-E326459" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66157" e_stop="66692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGTCATTCAAAACAAAATAGAGAGATGTTGACCTTAGATGTATAAGTAATTCTAAAGTAATACTTAATTTTCGAGGAAAGTATTATTTTTCATCATTTTAAATCGATTCTTATTTTTTTAATATATTATTCTGATTATTATGATTGACGGAGCTTGAGTGCGTCATTATAGGCTATATTGAAAGCTTTATGTCCCACACTCGCACCATGTCCATGTCAATTTCGATGTACACTACTTCTTCTAGAAAAAATGTCAGCCATTTCATATGTGGCCCATTCCAACACCAGTAGTCTGGTCAAATATGGCCAACATTCCTAATTTCCTATTAAGTATAGTGTAGAAGTCTCATTAATTATTGACTTTATTGGCGCTTTTGGTAGCGATTTTAATTAGCTATGCTACCAAGACAAAATGAACCATTGTCTGATATTTTAGTCATTTGTTAAGCACTTGCCTTTCTGCTACTTAGTTATATCGTCCCTGC-GTTTATTTTTGATTTGATTGTTATTCTTTTATGTAGAAATCAATGGTTGA</genome_strand>
        <mrna_strand>TCCGTCATTCAAAACAAAATAGAGAGATGTGGACCTGGGATGTATAAGTAATTCTAAAGTAATACTTAATTTTCGAGGAAAGTATTATTTTTCATCATTTTAAATCGATTCTTATTTTTTTAATATATTATTCTGATTATTATGATTGACGGAGCTTGAGTGCGTCATTATAGGCTATATTGAAAGCTTTATGTCCCACACTCGCACCATGTCCATGTCAATTTCGATGTACACTACTTCTTCTAGAAAAAATGTCAGCCATTTCATATGTGGCCCATTCCAACACCAGTAGTCTGGTCAAATATGGCCAACATTCCTAATTTCCTATTAAGTATAGTGTAGAAGTCTCATTAATTATTGACTTTATTGGCGCTTTTGGTAGCGATTTTAATTAGCTATGCTACCAAGACAAAATGAACCATTGTCTGATATTTTAGTCATTTGTTAAGCACTTGCCTTTCTGCTACTTAGTTATATCGTCCCTGCGGTTTATTTTTGAATTGATTGTTATTCTTTTATGTAGAAATCAATGGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E689270" ref_strand="+" ref_description="SGN-E689270 [t3_tus_80_N02]">
      <seq>gattgacggagcttgagtgcgtcattataggctatattgaaagctttatgtcccacactcgcaccatgtccatgtcaatttcgatgtacactacttcttctagaaaaaatgtcagccatttcatatgtggcccattccaacaccagtagtctggtcaaatatggccaacattcctaatttcctattaagtatagtgtagaagtctcattaattattgactttattggcgcttttggtagcgattttaattagctatgctaccaagacaaaatgaaccattgtctgatattttagtcatttgttaagcacttgcctttctgctacttagttatatcgtccctgcgtttatttttgatttgattgttattcttttatgtagaaatcaatggttgaagtagaagtgttggtaactaagaatgtgagtcaggcatgtgcaataacaccttcggtcagaaattgcgtgctcacatcctctcttgtagcctgtgtatggcaagatattaactcttcaacaataattgatcatgattgctggagtgacgagtccctctgcatagacnagaagctatggtatgctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="+" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="66000" stop="67181"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66300" g_stop="66864" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="565" r_length="565" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="+" ref_id="SGN-E689270" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66300" e_stop="66864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGACGGAGCTTGAGTGCGTCATTATAGGCTATATTGAAAGCTTTATGTCCCACACTCGCACCATGTCCATGTCAATTTCGATGTACACTACTTCTTCTAGAAAAAATGTCAGCCATTTCATATGTGGCCCATTCCAACACCAGTAGTCTGGTCAAATATGGCCAACATTCCTAATTTCCTATTAAGTATAGTGTAGAAGTCTCATTAATTATTGACTTTATTGGCGCTTTTGGTAGCGATTTTAATTAGCTATGCTACCAAGACAAAATGAACCATTGTCTGATATTTTAGTCATTTGTTAAGCACTTGCCTTTCTGCTACTTAGTTATATCGTCCCTGCGTTTATTTTTGATTTGATTGTTATTCTTTTATGTAGAAATCAATGGTTGAAGTAGAAGTGTTGGTAACTAAGAATGTGAGTCAGGCATGTGCAATAACACCTTCGGTCAGAAATTGCGTGCTCACATCCTCTCTTGTAGCCTGTGTATGGCAAGATATTAACTCTTCAACAATAATTGATCATGATTGCTGGAGTGACGAGTCCCTCTGCATAGACAAGAAG</genome_strand>
        <mrna_strand>GATTGACGGAGCTTGAGTGCGTCATTATAGGCTATATTGAAAGCTTTATGTCCCACACTCGCACCATGTCCATGTCAATTTCGATGTACACTACTTCTTCTAGAAAAAATGTCAGCCATTTCATATGTGGCCCATTCCAACACCAGTAGTCTGGTCAAATATGGCCAACATTCCTAATTTCCTATTAAGTATAGTGTAGAAGTCTCATTAATTATTGACTTTATTGGCGCTTTTGGTAGCGATTTTAATTAGCTATGCTACCAAGACAAAATGAACCATTGTCTGATATTTTAGTCATTTGTTAAGCACTTGCCTTTCTGCTACTTAGTTATATCGTCCCTGCGTTTATTTTTGATTTGATTGTTATTCTTTTATGTAGAAATCAATGGTTGAAGTAGAAGTGTTGGTAACTAAGAATGTGAGTCAGGCATGTGCAATAACACCTTCGGTCAGAAATTGCGTGCTCACATCCTCTCTTGTAGCCTGTGTATGGCAAGATATTAACTCTTCAACAATAATTGATCATGATTGCTGGAGTGACGAGTCCCTCTGCATAGACNAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E590893" ref_strand="-" ref_description="SGN-E590893 [44689]">
      <seq>caggcatgtgcaataacaccctcggtcagaaattgcgtgctcacatcctctcttgtagcctgtgtatggcaagatattaactcttcaagaacaattgatcatgattgctggagtgacgagtttatctgcatagacaagaagctatggtatgctctgggtaagctaaaggcagaaagagtagcgaggaacatagctagggagagtggattcaaactagctactatatgtcctggtctagtgactggtcctgaatttatcagcagaaatccaacccctaccattgcctatcttaaaggagctcaagaaatgtttagaaacggactactagcgacagtagacgttaacagattagcagtagaacatgtattggtgtttgaggatatgaagaacacatcatacaacagatacattagctttgatcaagttattaggagtgaagaggaacttgaaaaattagcaagagagaccggaatagatattaggacgacgagatcaaactcaaggactaattcctcaaacattgtcaatttgtcaaatgcaaagctttgcggcttaatgtctacaatacatagatgtcataacgagttctagttccaatcaatagacttattttacatactgaatacagaatctcctttccctttcttctgtatttaacaacttaagtaagagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="+" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="66424" stop="68445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66724" g_stop="66864" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66865" i_stop="67564" i_length="700">
            <donor d_prob="0.946" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67565" g_stop="67718" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="295" r_length="154" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67719" i_stop="67809" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67810" g_stop="68139" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="625" r_length="330" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="+" ref_id="SGN-E590893" ref_strand="-">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E590893" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="66724" e_stop="66864"/>
          <exon e_start="67565" e_stop="67718"/>
          <exon e_start="67810" e_stop="68139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGCATGTGCAATAACACCTTCGGTCAGAAATTGCGTGCTCACATCCTCTCTTGTAGCCTGTGTATGGCAAGATATTAACTCTTCAACAATAATTGATCATGATTGCTGGAGTGACGAGTCCCTCTGCATAGACAAGAAGGTATTGAGTTATTTTATTTGGCATTCTCTACCTACCACCACAAAAAGACTTGTCACACATGCTTAAAATAGTAAATAAGACAAATGTAGGGTATGGTCCTAATAAGATGATTGATATTCATCTGTCCTTAATCAAATGTTTCAAATTTTAGTAGTAGAAAAACTTTAGATTAGGGAGTGGTAGTAGAATATCATACATTTAGTGAGCCGACCCAACGTGAGCTCTTATAGATAGCGGCAATGGATTACAAATACAAAATACTAATTTGAAAAAGAAAAAATTGTAGCAGCCCATTGAAAAAGTATAGTTCATGATTAAAACAAGTTATAACTTTGCCAATCAGTAATCATTGTAAAGATAGCTCTAATACTTTTTCAAGTAAATATATTATTATCATTTCTACATGGGTTAGTAGTCCATTGAACTTAAAAATGTTAAGATAACTACGAAGCAACCACTAGTTCCCCACTAGACTGAAAATTAACAACCCATTAAAAGCTTATAATAGACCTTATCAGCTTCTTGCAAGTTGCAAGAATAAAAAGGGATTTCCCCCCTTTATTTTAATGTACATAATTAGCACTAACTTAGTGCTGTTATTTCAATGAATTATATTTTCTTACTAACTAAAGGAAAACAATAACACGTTTAAAACTTTTCTGGATATTAAATAATGTTATACTTGAACAAAAATTTGCAGCTATGGTATGCTCTGGGTAAGCTAAAGGCAGAAAGAGTAGCGTGTAACATCGCTAGGGAGAGTGGATTCAAACTAGCTACTATATGTCCTGGTCTAGTAACTGGTCCTGAATTTATCAGCAGAAATCCAACCCCTACCATTGCCTATCTTAAAGGTGATTACCAATTTTTTTTTTATTAGGTAATATAATTAATTAGTAACATTTCCGTACTTTCAGCTTATACACCTTAGTATGTGATTTTCAGGGGCTGAAGAAATGTTTAGAAACGGAGCATTGGCGACAGTAGACGTTAATAGATTAGCGGTAGAACATGTATTGGTGTTTGAAGATATGAAGAACACATCTTACAACAGATACATTAGCTTTGATCAAGTTGTTAGGAGTGAAGAGGAACTTGAAAAATTAGCAAGAGAGACGGGAATAGATATTAGGTCGATGAGATCAAACTGGAGGACTAATTCCTCAAACATTGTCAAATTGTCAAATGCAAAGCTTTGCTGCTTAATGTCTACAATACATAGATGTCATAACGAGATCTAGTTCTCATCAATAAATTTATTTTACATACTGAATA</genome_strand>
        <mrna_strand>CAGGCATGTGCAATAACACCCTCGGTCAGAAATTGCGTGCTCACATCCTCTCTTGTAGCCTGTGTATGGCAAGATATTAACTCTTCAAGAACAATTGATCATGATTGCTGGAGTGACGAGTTTATCTGCATAGACAAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGGTATGCTCTGGGTAAGCTAAAGGCAGAAAGAGTAGCGAGGAACATAGCTAGGGAGAGTGGATTCAAACTAGCTACTATATGTCCTGGTCTAGTGACTGGTCCTGAATTTATCAGCAGAAATCCAACCCCTACCATTGCCTATCTTAAAG...........................................................................................GAGCTCAAGAAATGTTTAGAAACGGACTACTAGCGACAGTAGACGTTAACAGATTAGCAGTAGAACATGTATTGGTGTTTGAGGATATGAAGAACACATCATACAACAGATACATTAGCTTTGATCAAGTTATTAGGAGTGAAGAGGAACTTGAAAAATTAGCAAGAGAGACCGGAATAGATATTAGGACGACGAGATCAAACTCAAGGACTAATTCCTCAAACATTGTCAATTTGTCAAATGCAAAGCTTTGCGGCTTAATGTCTACAATACATAGATGTCATAACGAGTTCTAGTTCCAATCAATAGACTTATTTTACATACTGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E377576" ref_strand="-" ref_description="SGN-E377576 [TUS-20-L13]">
      <seq>tttttttttttttttttttttccaaagtaatgcaaactttatagtaacttgagcaaatcaattgtacagagctagcatcctatgctcctacttcatacacgaacctaatacaagtgcattcagtatcctaatcaacataagctggacaatatactaacactatcaacaaaaggagaacacatcaagttgaagcaaccagcttcaggagatctcctatgggtttgttgaagtcactgcacttaccttctccaccaagccttttatctcattctccaactctgatttctcagcgcttgtaatcttacccttgcacttatccaatattgatgccatccctttcagcttctgcttgattagttgtacctgtgacttccccttacgagcttttagcgaggatagtggactctcagatttagaggaatagctgagcgtaaagttcacattagcagcaccaaaaggactttgccttaccgattctttaaaggcctgtgcagcatctgcaccatgcctgtagacaattcgaacagagttcgaatcacgaagcacttctgtttcctcttcattcagctctccaaacttgttatatattcgaatgatttcatcttctggtggcaaagaaaaaccagtcaaaaatgccaccaacagaatcacagatgaagcttctctaccatcatcctcatcttcttttccctgactagaaggaccatagtcttttttgagtttggtaacttctgattttgcataatttgtcttcctcttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="+" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="79497" stop="82732"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80691" g_stop="80717" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="0.815"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80718" i_stop="81696" i_length="979">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81697" g_stop="82432" g_length="736"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="763" r_length="736" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="+" ref_id="SGN-E377576" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377576" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="80691" e_stop="80717"/>
          <exon e_start="81697" e_stop="82432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTATTTTTATTTTATTTTCCAGATCATTCTTCTTTTCTTTGCATTTTCATGTTTGTTCTTGATATATAATGTCATTGTAAGGACAATCCAATAATTAATCCAAAATAGTAAATGCCATGAAATTGAATAAGTAAGCGTTCTAATCATTTTGGTTCTACTCAACTTTCCTTGATCCCTTGTAAACAATTGTAAAAAAATAAATAATCCAAAAAACATAGTTAATTCGAAATGGTACATTACAACAACAATTATAGTTCTGGAACTTCAATAACGGAAATAATAGTAGGGATAAATATTCTTCAAACATGTTTTGAAACCTACTACAATTCATTTTCTGCAAATCCTGAAATATTCTTTTCTAAAATGTCAGAATTTTAACTGGGTTGATATCCAAATCTAGAGTTACATAGCTAGTTCACAGCCTTATAGCTCCAATCAATGTTTGGCAAAGATTATGAGCCATTATTATGCCAAAGAATGAACTCTTGACTCCCTCTAATTGTAATTGATGTATTCGTAACTGCTTAATGCTTGATGCTGGACAATACCTTTCTTCACTATCTGTGCTTTGATATTATGGTTAGCAGAACTTCACGACTGTTTTGGGCTTATCACAGACATTCATTGGCACCCGGAAGGTACATTCTTGATAATTCATTAAAAGAAATATATAGAATGCCTTTGATATAGACACTAAACTTCTGCAGTCACGTGACAAATACAAACTTCACAAGGCTATTGTATCCATAAACAAGCTCATATCAGTATGATATTAACTCTGAATGTGCAAATAATAGACTCAGAAAACCGACTGTATCCCTGCATTCAACAAGCAATTCAAGCTACCATCTCTACAAGTGCAGTTCAGGATCTTTTGACAACGATACATTGACAAGAATATTCATAAATGCAAAACACAAACGCATTTTTACTTCCCTTTTAGTTTTGGTTGGTCAGGGGATGGCTGCAGATTCAGCTAACTCTTAACAAAAACTAATCAAAGTAATTGCAACTTTATAGTAACTTGAGCAAATCAATTGTACAGAGCTAGCATCCTATGCTCCTACTTCATACACGAACCTAATACAAGTGCATTCAGTATCCTAATCAACATAAGCTGGACAATATACTAACACTATCAACAAAAGGAGAACACATCAAGTTGAAGCAACCAGCTTCAGGAGATCTCCTATGGGTTTGTTGAAGTCACTGCACTTACCTTCTCCACCAAGCCTTTTATCTCATTCTCCAACTCTGATTTCTCAGCGCTTGTAATCTTACCCTTGCACTTATCCAATATTGATGCCATCCCTTTCAGCTTCTGCTTGATTAGTTGTACCTGTGACTTCCCCTTACGAGCTTTTAGCGAGGATAGTGGACTCTCAGATTTAGAGGAATAGCTGAGCGTAAAGTTCACATTAGCAGCACCAAAAGGACTTTGCCTTACCGATTCTTTAAAGGCCTGTGCAGCATCTGCACCATGCCTGTAGACAATTCGAACAGAGTTCGAATCACGAAGCACTTCTGTTTCCTCTTCATTCAGCTCTCCAAACTTGTTATATATTCGAATGATTTCATCTTCTGGTGGCAAAGAAAAACCAGTCAAAAATGCCACCAACAGAATCACAGATGAAGCTTCTCTACCATCATCCTCATCTTCTTTTCCCTGACTAGAAGGACCATAGTCTTTTTTGAGTTTGGTAACTTCTGATTTTGCATAATTTGTCTTCCTCTTCTTT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTCCAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGCAAACTTTATAGTAACTTGAGCAAATCAATTGTACAGAGCTAGCATCCTATGCTCCTACTTCATACACGAACCTAATACAAGTGCATTCAGTATCCTAATCAACATAAGCTGGACAATATACTAACACTATCAACAAAAGGAGAACACATCAAGTTGAAGCAACCAGCTTCAGGAGATCTCCTATGGGTTTGTTGAAGTCACTGCACTTACCTTCTCCACCAAGCCTTTTATCTCATTCTCCAACTCTGATTTCTCAGCGCTTGTAATCTTACCCTTGCACTTATCCAATATTGATGCCATCCCTTTCAGCTTCTGCTTGATTAGTTGTACCTGTGACTTCCCCTTACGAGCTTTTAGCGAGGATAGTGGACTCTCAGATTTAGAGGAATAGCTGAGCGTAAAGTTCACATTAGCAGCACCAAAAGGACTTTGCCTTACCGATTCTTTAAAGGCCTGTGCAGCATCTGCACCATGCCTGTAGACAATTCGAACAGAGTTCGAATCACGAAGCACTTCTGTTTCCTCTTCATTCAGCTCTCCAAACTTGTTATATATTCGAATGATTTCATCTTCTGGTGGCAAAGAAAAACCAGTCAAAAATGCCACCAACAGAATCACAGATGAAGCTTCTCTACCATCATCCTCATCTTCTTTTCCCTGACTAGAAGGACCATAGTCTTTTTTGAGTTTGGTAACTTCTGATTTTGCATAATTTGTCTTCCTCTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E390005" ref_strand="+" ref_description="SGN-E390005 [TUS-4-F11]">
      <seq>caaagaagaggaagacaattatgcaaaatcagaagttaccaaactcaaaaaagactatggtccttctagtcagggaaaagaagatgaggatgatggtagagaagcttcatctgtgattctgttggtggcatttttgactggtttttctttgccaccagaagatgaaatcattcgaatatataacaagtttggagagctgaatgaagaggaaacagaagtgcttcgtgattcgaactctgttcgaattgtctacaggcatggtgcagatgctgcacaggcctttaaagaatcggtaaggcaaagtccttttggtgctgctaatgtgaactttacgctcagctattcctctaaatctgagagtccactatcctcgctaaaagctcgtaaggggaagtcacaggtacaactaatcaagcagaagctgaaagggatggcatcaatattggataagtgcaagggtaagattacaagcgctgagaaatcagagttggagaatgagataaaaggcttggtggagaaggtaagtgcagtgacttcaacaaacccataggagatctcctgaagctggttgcttcaacttgatgtgttctccttttgttgatagtgttagtatattgtccagcttatgttgattangatactgaatgcacttgtattaggttcgtgtatgaagtaggagcataggatgctagctctgtacaattgatttgctncagttactataaagttgcaattactttgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="82733" stop="79502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82433" g_stop="81675" g_length="759"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="758" r_length="758" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E390005" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82433" e_stop="81675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGAAGAGGAAGACAAATTATGCAAAATCAGAAGTTACCAAACTCAAAAAAGACTATGGTCCTTCTAGTCAGGGAAAAGAAGATGAGGATGATGGTAGAGAAGCTTCATCTGTGATTCTGTTGGTGGCATTTTTGACTGGTTTTTCTTTGCCACCAGAAGATGAAATCATTCGAATATATAACAAGTTTGGAGAGCTGAATGAAGAGGAAACAGAAGTGCTTCGTGATTCGAACTCTGTTCGAATTGTCTACAGGCATGGTGCAGATGCTGCACAGGCCTTTAAAGAATCGGTAAGGCAAAGTCCTTTTGGTGCTGCTAATGTGAACTTTACGCTCAGCTATTCCTCTAAATCTGAGAGTCCACTATCCTCGCTAAAAGCTCGTAAGGGGAAGTCACAGGTACAACTAATCAAGCAGAAGCTGAAAGGGATGGCATCAATATTGGATAAGTGCAAGGGTAAGATTACAAGCGCTGAGAAATCAGAGTTGGAGAATGAGATAAAAGGCTTGGTGGAGAAGGTAAGTGCAGTGACTTCAACAAACCCATAGGAGATCTCCTGAAGCTGGTTGCTTCAACTTGATGTGTTCTCCTTTTGTTGATAGTGTTAGTATATTGTCCAGCTTATGTTGATTAGGATACTGAATGCACTTGTATTAGGTTCGTGTATGAAGTAGGAGCATAGGATGCTAGCTCTGTACAATTGATTTGCTCAAGTTACTATAAAGTTGCAATTACTTTGATTAGTTTTTGTTAAGA</genome_strand>
        <mrna_strand>CAAAGAAGAGGAAGACA-ATTATGCAAAATCAGAAGTTACCAAACTCAAAAAAGACTATGGTCCTTCTAGTCAGGGAAAAGAAGATGAGGATGATGGTAGAGAAGCTTCATCTGTGATTCTGTTGGTGGCATTTTTGACTGGTTTTTCTTTGCCACCAGAAGATGAAATCATTCGAATATATAACAAGTTTGGAGAGCTGAATGAAGAGGAAACAGAAGTGCTTCGTGATTCGAACTCTGTTCGAATTGTCTACAGGCATGGTGCAGATGCTGCACAGGCCTTTAAAGAATCGGTAAGGCAAAGTCCTTTTGGTGCTGCTAATGTGAACTTTACGCTCAGCTATTCCTCTAAATCTGAGAGTCCACTATCCTCGCTAAAAGCTCGTAAGGGGAAGTCACAGGTACAACTAATCAAGCAGAAGCTGAAAGGGATGGCATCAATATTGGATAAGTGCAAGGGTAAGATTACAAGCGCTGAGAAATCAGAGTTGGAGAATGAGATAAAAGGCTTGGTGGAGAAGGTAAGTGCAGTGACTTCAACAAACCCATAGGAGATCTCCTGAAGCTGGTTGCTTCAACTTGATGTGTTCTCCTTTTGTTGATAGTGTTAGTATATTGTCCAGCTTATGTTGATTANGATACTGAATGCACTTGTATTAGGTTCGTGTATGAAGTAGGAGCATAGGATGCTAGCTCTGTACAATTGATTTGCTNCAGTTACTATAAAGTTGCAATTACTTTGAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E550186" ref_strand="+" ref_description="SGN-E550186 [TUS-5-F11]">
      <seq>caaagatcaggaagacaaattatgcaaaatcagaagttaccaaactcaaaaaagactatggtccttctagtcagggaaaagaagatgaggatgatggtagagaagcttcatctgtgattctgttggtggcatttttgactggtttttctttgccaccagaagatgaaatcattcgaatatataacaagtttggagagctgaatgaagaggaaacagaagtgcttcgtgattcgaactctgttcgaattgtctacaggcatggtgcagatgctgcacaggcctttaaagaatcggtaaggcaaagtccttttggtgctgctaatgtgaactttacgctcagctattcctctaaatctgagagtccactatcctcgctaaaagctcgtaaggggaagtcacaggtacaactaatcaagcagaagctgaaagggatggcatcaatattggataagtgcaagggtaagattacaagcgctgagaaatcagagttggagaatgagataaaaggcttggtggagaaggtaagtgcagtgacttcaacaaacccataggagatctcctgaagctggttgcttcnacttgatgtgttctccttttgttgatagtgttagtatattgtccagcttatgttgattaggatactgaatgcacttgtattaggttcgtgtatgaagtaggagcataggatgctagctctgtacaatgatttgctnncagttactataagnntgcattactttgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="82733" stop="81421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82433" g_stop="81689" g_length="745"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="744" r_length="744" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E550186" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82433" e_stop="81689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGAAGAGGAAGACAAATTATGCAAAATCAGAAGTTACCAAACTCAAAAAAGACTATGGTCCTTCTAGTCAGGGAAAAGAAGATGAGGATGATGGTAGAGAAGCTTCATCTGTGATTCTGTTGGTGGCATTTTTGACTGGTTTTTCTTTGCCACCAGAAGATGAAATCATTCGAATATATAACAAGTTTGGAGAGCTGAATGAAGAGGAAACAGAAGTGCTTCGTGATTCGAACTCTGTTCGAATTGTCTACAGGCATGGTGCAGATGCTGCACAGGCCTTTAAAGAATCGGTAAGGCAAAGTCCTTTTGGTGCTGCTAATGTGAACTTTACGCTCAGCTATTCCTCTAAATCTGAGAGTCCACTATCCTCGCTAAAAGCTCGTAAGGGGAAGTCACAGGTACAACTAATCAAGCAGAAGCTGAAAGGGATGGCATCAATATTGGATAAGTGCAAGGGTAAGATTACAAGCGCTGAGAAATCAGAGTTGGAGAATGAGATAAAAGGCTTGGTGGAGAAGGTAAGTGCAGTGACTTCAACAAACCCATAGGAGATCTCCTGAAGCTGGTTGCTTCAACTTGATGTGTTCTCCTTTTGTTGATAGTGTTAGTATATTGTCCAGCTTATGTTGATTAGGATACTGAATGCACTTGTATTAGGTTCGTGTATGAAGTAGGAGCATAGGATGCTAGCTCTGTACAATTGATTTGCTCA-AGTTACTATAAAGTTGCAATTACTTTGATT</genome_strand>
        <mrna_strand>CAAAGATCAGGAAGACAAATTATGCAAAATCAGAAGTTACCAAACTCAAAAAAGACTATGGTCCTTCTAGTCAGGGAAAAGAAGATGAGGATGATGGTAGAGAAGCTTCATCTGTGATTCTGTTGGTGGCATTTTTGACTGGTTTTTCTTTGCCACCAGAAGATGAAATCATTCGAATATATAACAAGTTTGGAGAGCTGAATGAAGAGGAAACAGAAGTGCTTCGTGATTCGAACTCTGTTCGAATTGTCTACAGGCATGGTGCAGATGCTGCACAGGCCTTTAAAGAATCGGTAAGGCAAAGTCCTTTTGGTGCTGCTAATGTGAACTTTACGCTCAGCTATTCCTCTAAATCTGAGAGTCCACTATCCTCGCTAAAAGCTCGTAAGGGGAAGTCACAGGTACAACTAATCAAGCAGAAGCTGAAAGGGATGGCATCAATATTGGATAAGTGCAAGGGTAAGATTACAAGCGCTGAGAAATCAGAGTTGGAGAATGAGATAAAAGGCTTGGTGGAGAAGGTAAGTGCAGTGACTTCAACAAACCCATAGGAGATCTCCTGAAGCTGGTTGCTTCNACTTGATGTGTTCTCCTTTTGTTGATAGTGTTAGTATATTGTCCAGCTTATGTTGATTAGGATACTGAATGCACTTGTATTAGGTTCGTGTATGAAGTAGGAGCATAGGATGCTAGCTCTGTACAA-TGATTTGCTNNCAGTTACTATAAGNNTGC-ATTACTTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E550448" ref_strand="+" ref_description="SGN-E550448 [TUS-5-F11](-)">
      <seq>caaagaagaggaagacaaattatgcaaaatcagaagttaccaaactcaaaaaagactatggtccttctagtcagggaaaagaagatgaggatgatggtagagaagcttcatctgtgattctgttggtggcatttttgactggtttttctttgccaccagaagatgaaatcattcgaatatataacaagtttggagagctgaatgaagaggaaacagaagtgcttcgtgattcgaactctgttcgaattgtctacaggcatggtgcagatgctgcacaggcctttaaagaatcggtaaggcaaagtccttttggtgctgctaatgtgaactttacgctcagctattcctctaaatctgagagtccactatcctcgctaaaagctcgtaaggggaagtcacaggtacaactaatcaagcagaagctgaaagggatggcatcaatattggataagtgcaagggtaagattacaagcgctgagaaatcagagttggagaatgagataaaaggcttggtggagaaggtaagtgcagtgacttcaacaaacccataggagatctcctgaagctggttgcttcaacttgatgtgttctccttttgttgatagtgttagtatattgtccagcttatgttgattaggatactgaatgcacttgtattaggttcgtatatgaagtaggagcatacgatgctagcgatgtacaattgattgctcaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="82733" stop="81416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82433" g_stop="81716" g_length="718"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="717" r_length="717" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E550448" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82433" e_stop="81716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGAAGAGGAAGACAAATTATGCAAAATCAGAAGTTACCAAACTCAAAAAAGACTATGGTCCTTCTAGTCAGGGAAAAGAAGATGAGGATGATGGTAGAGAAGCTTCATCTGTGATTCTGTTGGTGGCATTTTTGACTGGTTTTTCTTTGCCACCAGAAGATGAAATCATTCGAATATATAACAAGTTTGGAGAGCTGAATGAAGAGGAAACAGAAGTGCTTCGTGATTCGAACTCTGTTCGAATTGTCTACAGGCATGGTGCAGATGCTGCACAGGCCTTTAAAGAATCGGTAAGGCAAAGTCCTTTTGGTGCTGCTAATGTGAACTTTACGCTCAGCTATTCCTCTAAATCTGAGAGTCCACTATCCTCGCTAAAAGCTCGTAAGGGGAAGTCACAGGTACAACTAATCAAGCAGAAGCTGAAAGGGATGGCATCAATATTGGATAAGTGCAAGGGTAAGATTACAAGCGCTGAGAAATCAGAGTTGGAGAATGAGATAAAAGGCTTGGTGGAGAAGGTAAGTGCAGTGACTTCAACAAACCCATAGGAGATCTCCTGAAGCTGGTTGCTTCAACTTGATGTGTTCTCCTTTTGTTGATAGTGTTAGTATATTGTCCAGCTTATGTTGATTAGGATACTGAATGCACTTGTATTAGGTTCGTGTATGAAGTAGGAGCATAGGATGCTAGCTCTGTACAATTGATTTGCTCAAGT</genome_strand>
        <mrna_strand>CAAAGAAGAGGAAGACAAATTATGCAAAATCAGAAGTTACCAAACTCAAAAAAGACTATGGTCCTTCTAGTCAGGGAAAAGAAGATGAGGATGATGGTAGAGAAGCTTCATCTGTGATTCTGTTGGTGGCATTTTTGACTGGTTTTTCTTTGCCACCAGAAGATGAAATCATTCGAATATATAACAAGTTTGGAGAGCTGAATGAAGAGGAAACAGAAGTGCTTCGTGATTCGAACTCTGTTCGAATTGTCTACAGGCATGGTGCAGATGCTGCACAGGCCTTTAAAGAATCGGTAAGGCAAAGTCCTTTTGGTGCTGCTAATGTGAACTTTACGCTCAGCTATTCCTCTAAATCTGAGAGTCCACTATCCTCGCTAAAAGCTCGTAAGGGGAAGTCACAGGTACAACTAATCAAGCAGAAGCTGAAAGGGATGGCATCAATATTGGATAAGTGCAAGGGTAAGATTACAAGCGCTGAGAAATCAGAGTTGGAGAATGAGATAAAAGGCTTGGTGGAGAAGGTAAGTGCAGTGACTTCAACAAACCCATAGGAGATCTCCTGAAGCTGGTTGCTTCAACTTGATGTGTTCTCCTTTTGTTGATAGTGTTAGTATATTGTCCAGCTTATGTTGATTAGGATACTGAATGCACTTGTATTAGGTTCGTATATGAAGTAGGAGCATACGATGCTAGCGATGTACAATTGA-TTGCTCAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E389533" ref_strand="+" ref_description="SGN-E389533 [TUS-4-F11](-)">
      <seq>caaagaagaggaagacaaattatgcaaaatcagaagttaccaaactcaaaaaagactatggtccttctagtcagggaaaagaagatgaggatgatggtagagaagcttcatctgtgattctgttggtggcatttttgactggtttttctttgccaccagaagatgaaatcattcgaatatataacaagtttggagagctgaatgaagaggaaacagaagtgcttcgtgattcgaactctgttcgaattgtctacaggcatggtgcagatgctgcacaggcctttaaagaatcggtaaggcaaagtccttttggtgctgctaatgtgaactttacgctcagctattcctctaaatctgagagtccactatcctcgctaaaagctcgtaaggggaagtcacaggtacaactaatcaagcagaagctgaaagggatggcatcaatattggataagtgcaagggtaagattacaagcgctgagaaatcagagttggagaatgagataaaaggcttggtggagaaggtaagtgcagtgacttcaacaaacccataggagatctcctgaagctggttgcttcaacttgatgtgttctccttttgttgatagtgttagtatattgtccagcttatgttgattaggatactgaatgcacttgtattaggttcgtgtatgaagtaggagcataggatgctagctcagtacaattgattgctcaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="82733" stop="81416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82433" g_stop="81716" g_length="718"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="717" r_length="717" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E389533" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82433" e_stop="81716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGAAGAGGAAGACAAATTATGCAAAATCAGAAGTTACCAAACTCAAAAAAGACTATGGTCCTTCTAGTCAGGGAAAAGAAGATGAGGATGATGGTAGAGAAGCTTCATCTGTGATTCTGTTGGTGGCATTTTTGACTGGTTTTTCTTTGCCACCAGAAGATGAAATCATTCGAATATATAACAAGTTTGGAGAGCTGAATGAAGAGGAAACAGAAGTGCTTCGTGATTCGAACTCTGTTCGAATTGTCTACAGGCATGGTGCAGATGCTGCACAGGCCTTTAAAGAATCGGTAAGGCAAAGTCCTTTTGGTGCTGCTAATGTGAACTTTACGCTCAGCTATTCCTCTAAATCTGAGAGTCCACTATCCTCGCTAAAAGCTCGTAAGGGGAAGTCACAGGTACAACTAATCAAGCAGAAGCTGAAAGGGATGGCATCAATATTGGATAAGTGCAAGGGTAAGATTACAAGCGCTGAGAAATCAGAGTTGGAGAATGAGATAAAAGGCTTGGTGGAGAAGGTAAGTGCAGTGACTTCAACAAACCCATAGGAGATCTCCTGAAGCTGGTTGCTTCAACTTGATGTGTTCTCCTTTTGTTGATAGTGTTAGTATATTGTCCAGCTTATGTTGATTAGGATACTGAATGCACTTGTATTAGGTTCGTGTATGAAGTAGGAGCATAGGATGCTAGCTCTGTACAATTGATTTGCTCAAGT</genome_strand>
        <mrna_strand>CAAAGAAGAGGAAGACAAATTATGCAAAATCAGAAGTTACCAAACTCAAAAAAGACTATGGTCCTTCTAGTCAGGGAAAAGAAGATGAGGATGATGGTAGAGAAGCTTCATCTGTGATTCTGTTGGTGGCATTTTTGACTGGTTTTTCTTTGCCACCAGAAGATGAAATCATTCGAATATATAACAAGTTTGGAGAGCTGAATGAAGAGGAAACAGAAGTGCTTCGTGATTCGAACTCTGTTCGAATTGTCTACAGGCATGGTGCAGATGCTGCACAGGCCTTTAAAGAATCGGTAAGGCAAAGTCCTTTTGGTGCTGCTAATGTGAACTTTACGCTCAGCTATTCCTCTAAATCTGAGAGTCCACTATCCTCGCTAAAAGCTCGTAAGGGGAAGTCACAGGTACAACTAATCAAGCAGAAGCTGAAAGGGATGGCATCAATATTGGATAAGTGCAAGGGTAAGATTACAAGCGCTGAGAAATCAGAGTTGGAGAATGAGATAAAAGGCTTGGTGGAGAAGGTAAGTGCAGTGACTTCAACAAACCCATAGGAGATCTCCTGAAGCTGGTTGCTTCAACTTGATGTGTTCTCCTTTTGTTGATAGTGTTAGTATATTGTCCAGCTTATGTTGATTAGGATACTGAATGCACTTGTATTAGGTTCGTGTATGAAGTAGGAGCATAGGATGCTAGCTCAGTACAATTGA-TTGCTCAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E232101" ref_strand="+" ref_description="SGN-E232101 [cLED-7-D10]">
      <seq>aaagaagaggaagacaaattatgcaaaatcagaagttaccaaactcaaaaaagactatggtccttctagtcagggaaaagaagatgaggatgatggtagagaagcttcatctgtgattctgttggaggcatttttgactggtttttctttgccaccagaagatgaaatcattcgaatatataacaagtttggagagctgcatgaagaggaaacagaagtgcttcgtgattcgaactctgttcgaattgtctacaggcatggtgcacatgctgcacaggcctttaaagaatcggtaaggcaaagtccttttggtgctgctaatgtgaactttacgctcagctgttcctctaaatctgagagtccactatcctcgctaaaagctcgtaaggggaagtcacaggtacaactaatcaagcagaagctgaaagggatggcatcaatattggataagtgcaagggtaagattacaagcgctgagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="82732" stop="81652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82432" g_stop="81952" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E232101" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82432" e_stop="81952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAAGAGGAAGACAAATTATGCAAAATCAGAAGTTACCAAACTCAAAAAAGACTATGGTCCTTCTAGTCAGGGAAAAGAAGATGAGGATGATGGTAGAGAAGCTTCATCTGTGATTCTGTTGGTGGCATTTTTGACTGGTTTTTCTTTGCCACCAGAAGATGAAATCATTCGAATATATAACAAGTTTGGAGAGCTGAATGAAGAGGAAACAGAAGTGCTTCGTGATTCGAACTCTGTTCGAATTGTCTACAGGCATGGTGCAGATGCTGCACAGGCCTTTAAAGAATCGGTAAGGCAAAGTCCTTTTGGTGCTGCTAATGTGAACTTTACGCTCAGCTATTCCTCTAAATCTGAGAGTCCACTATCCTCGCTAAAAGCTCGTAAGGGGAAGTCACAGGTACAACTAATCAAGCAGAAGCTGAAAGGGATGGCATCAATATTGGATAAGTGCAAGGGTAAGATTACAAGCGCTGAGAAA</genome_strand>
        <mrna_strand>AAAGAAGAGGAAGACAAATTATGCAAAATCAGAAGTTACCAAACTCAAAAAAGACTATGGTCCTTCTAGTCAGGGAAAAGAAGATGAGGATGATGGTAGAGAAGCTTCATCTGTGATTCTGTTGGAGGCATTTTTGACTGGTTTTTCTTTGCCACCAGAAGATGAAATCATTCGAATATATAACAAGTTTGGAGAGCTGCATGAAGAGGAAACAGAAGTGCTTCGTGATTCGAACTCTGTTCGAATTGTCTACAGGCATGGTGCACATGCTGCACAGGCCTTTAAAGAATCGGTAAGGCAAAGTCCTTTTGGTGCTGCTAATGTGAACTTTACGCTCAGCTGTTCCTCTAAATCTGAGAGTCCACTATCCTCGCTAAAAGCTCGTAAGGGGAAGTCACAGGTACAACTAATCAAGCAGAAGCTGAAAGGGATGGCATCAATATTGGATAAGTGCAAGGGTAAGATTACAAGCGCTGAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E590756" ref_strand="+" ref_description="SGN-E590756 [44358]">
      <seq>agaaagcgaagctctaagacttttgataccatggctatcaattcatctgtggatgaagtactgtccgaggttcagtctactgctctaaaccctcttttattgaggaatgaatctcttgagaaggccagaggtttcatttccactttcagaaactcagtatattttgatggatcaaactacaagcagtatcaccaagtggaaacaggaaagaagagaaaatctgtgggatcaggaaatgtaatttcccagagtgattctaaatcaccagactccgttcgttcaaagaagaggaagacaaatcatgcgaaatcagaagttaccaaactcaaaaaagaatctggtccttctagtcagggaaaagaagatgaggatgatggtagagaagcttcatctgtgattctcttggtgacatttttaactggtttttctttgccatcagaggatgaaatcattcgactgtataacaagtttggagagctgaatgaagaggaaacaaaagtgctatgtgatttgaactctgttcgaattgtctacaggcgtggttcagatgctgcacaggccttcaaagaatcagtaaggcaaagtccttttggtgctgctaatgtgaactttacgctcagctattcctccaaatctgagagtccactatcctcgctgaaagctcgtaaggggaagtcacaggtacaactaatcaagcagaagctgaaggggatggcatcaatattggataagtgtaaggataagattacaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="83010" stop="81661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82713" g_stop="81961" g_length="753"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="753" r_length="753" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E590756" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E590756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82713" e_stop="81961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAAGCGAAGCTCTAGGACTTTTGATACCGTGGCTATCAATTCATCTGTGGATGAAGTTTTGTCCGAGGTTCAGTCTACTGCTCTAAACCCTCTTCTGTTGAGGAATGGATCTCTTGAGAAGGCCAGAGGTTTCATTTCCACTTTCAGAAACTCGCTATATTATGATGGATCAAACTACAAGCAGTATCACCAAATGGAAACAGGAAAGAAGAGAAAATCCGCGGGATCAGGAAATCTAATTTCCCAGAGTGATACTGAATCACCAGACTCCATTCCTTCAAAGAAGAGGAAGACAAATTATGCAAAATCAGAAGTTACCAAACTCAAAAAAGACTATGGTCCTTCTAGTCAGGGAAAAGAAGATGAGGATGATGGTAGAGAAGCTTCATCTGTGATTCTGTTGGTGGCATTTTTGACTGGTTTTTCTTTGCCACCAGAAGATGAAATCATTCGAATATATAACAAGTTTGGAGAGCTGAATGAAGAGGAAACAGAAGTGCTTCGTGATTCGAACTCTGTTCGAATTGTCTACAGGCATGGTGCAGATGCTGCACAGGCCTTTAAAGAATCGGTAAGGCAAAGTCCTTTTGGTGCTGCTAATGTGAACTTTACGCTCAGCTATTCCTCTAAATCTGAGAGTCCACTATCCTCGCTAAAAGCTCGTAAGGGGAAGTCACAGGTACAACTAATCAAGCAGAAGCTGAAAGGGATGGCATCAATATTGGATAAGTGCAAGGGTAAGATTACAAGC</genome_strand>
        <mrna_strand>AGAAAGCGAAGCTCTAAGACTTTTGATACCATGGCTATCAATTCATCTGTGGATGAAGTACTGTCCGAGGTTCAGTCTACTGCTCTAAACCCTCTTTTATTGAGGAATGAATCTCTTGAGAAGGCCAGAGGTTTCATTTCCACTTTCAGAAACTCAGTATATTTTGATGGATCAAACTACAAGCAGTATCACCAAGTGGAAACAGGAAAGAAGAGAAAATCTGTGGGATCAGGAAATGTAATTTCCCAGAGTGATTCTAAATCACCAGACTCCGTTCGTTCAAAGAAGAGGAAGACAAATCATGCGAAATCAGAAGTTACCAAACTCAAAAAAGAATCTGGTCCTTCTAGTCAGGGAAAAGAAGATGAGGATGATGGTAGAGAAGCTTCATCTGTGATTCTCTTGGTGACATTTTTAACTGGTTTTTCTTTGCCATCAGAGGATGAAATCATTCGACTGTATAACAAGTTTGGAGAGCTGAATGAAGAGGAAACAAAAGTGCTATGTGATTTGAACTCTGTTCGAATTGTCTACAGGCGTGGTTCAGATGCTGCACAGGCCTTCAAAGAATCAGTAAGGCAAAGTCCTTTTGGTGCTGCTAATGTGAACTTTACGCTCAGCTATTCCTCCAAATCTGAGAGTCCACTATCCTCGCTGAAAGCTCGTAAGGGGAAGTCACAGGTACAACTAATCAAGCAGAAGCTGAAGGGGATGGCATCAATATTGGATAAGTGTAAGGATAAGATTACAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E706536" ref_strand="+" ref_description="SGN-E706536 [FA30BA01]">
      <seq>gagggaaaaaattggtaagagggtcaacaagaagtctggtgacagtgacttggtgaaaacaaagaaacttagtgtttcaattcctgagagtgatgaagttggcaaccagcaagacaatgcgggccctttatcaagggaaagaaagaagagcaagtatttgtcacctccttatacaagccccaagtggaatgcaggaaaatcaagctttaagagagaactggcaatagaatcacagaaattttctgataattccaagattggtgagaggatgacaaaggctgcacgtcttcttttgtcttctcctgattcgaatgggaaagaggccttcaaggatgacgttgacaagagttctgggatcaataagcgaagctctaggacttttgataccgtggctatcaattcatctgtggatgaagttttgtccgaggttcagtctactgctctaaaccctcttctgttgaggaatggatctcttgagaaggccagaggtttcatttccactttcagaaactcgctatattatgatggatcaaactacaagcagtatcaccaaatggaaacaggaaagaagagaaaatccgcgggatcaggaaatctaatttcccagagtgatactgaatcaccagactccattccttcaaagaagaggaagacaaattatgcaaaatcagaagttaccaaactcaaaaaagactatggtccttctagtcagggaaaagaagatgaggatgatggtagagaagcttcatctgtgattctgttggtggcatttttgactggtttttctttgccaccagaagatgaaatcattcgaatatataacaagtttggagagctgaatgaagaggaaacagaagtgcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="83367" stop="81909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83070" g_stop="82209" g_length="862"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="863" r_length="863" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E706536" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83070" e_stop="82209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GA-TGAAAAAATTGGTAAGAGGGTCAACAAGAAGTCTGGTGACAGTGACTTGGTGAAAACAAAGAAACTTAGTGTTTCAATTCCTGAGAGTGATGAAGTTGGCAACCAGCAAGACAATGCGGGCCCTTTATCAAGGGAAAGAAAGAAGAGCAAGTATTTGTCACCTCCTTATACAAGCCCCAAGTGGAATGCAGGAAAATCAAGCTTTAAGAGAGAACTGGCAATAGAATCACAGAAATTTTCTGATAATTCCAAGATTGGTGAGAGGATGACAAAGGCTGCACGTCTTCTTTTGTCTTCTCCTGATTCGAATGGGAAAGAGGCCTTCAAGGATGACGTTGACAAGAGTTCTGGGATCAATAAGCGAAGCTCTAGGACTTTTGATACCGTGGCTATCAATTCATCTGTGGATGAAGTTTTGTCCGAGGTTCAGTCTACTGCTCTAAACCCTCTTCTGTTGAGGAATGGATCTCTTGAGAAGGCCAGAGGTTTCATTTCCACTTTCAGAAACTCGCTATATTATGATGGATCAAACTACAAGCAGTATCACCAAATGGAAACAGGAAAGAAGAGAAAATCCGCGGGATCAGGAAATCTAATTTCCCAGAGTGATACTGAATCACCAGACTCCATTCCTTCAAAGAAGAGGAAGACAAATTATGCAAAATCAGAAGTTACCAAACTCAAAAAAGACTATGGTCCTTCTAGTCAGGGAAAAGAAGATGAGGATGATGGTAGAGAAGCTTCATCTGTGATTCTGTTGGTGGCATTTTTGACTGGTTTTTCTTTGCCACCAGAAGATGAAATCATTCGAATATATAACAAGTTTGGAGAGCTGAATGAAGAGGAAACAGAAGTGCTTC</genome_strand>
        <mrna_strand>GAGGGAAAAAATTGGTAAGAGGGTCAACAAGAAGTCTGGTGACAGTGACTTGGTGAAAACAAAGAAACTTAGTGTTTCAATTCCTGAGAGTGATGAAGTTGGCAACCAGCAAGACAATGCGGGCCCTTTATCAAGGGAAAGAAAGAAGAGCAAGTATTTGTCACCTCCTTATACAAGCCCCAAGTGGAATGCAGGAAAATCAAGCTTTAAGAGAGAACTGGCAATAGAATCACAGAAATTTTCTGATAATTCCAAGATTGGTGAGAGGATGACAAAGGCTGCACGTCTTCTTTTGTCTTCTCCTGATTCGAATGGGAAAGAGGCCTTCAAGGATGACGTTGACAAGAGTTCTGGGATCAATAAGCGAAGCTCTAGGACTTTTGATACCGTGGCTATCAATTCATCTGTGGATGAAGTTTTGTCCGAGGTTCAGTCTACTGCTCTAAACCCTCTTCTGTTGAGGAATGGATCTCTTGAGAAGGCCAGAGGTTTCATTTCCACTTTCAGAAACTCGCTATATTATGATGGATCAAACTACAAGCAGTATCACCAAATGGAAACAGGAAAGAAGAGAAAATCCGCGGGATCAGGAAATCTAATTTCCCAGAGTGATACTGAATCACCAGACTCCATTCCTTCAAAGAAGAGGAAGACAAATTATGCAAAATCAGAAGTTACCAAACTCAAAAAAGACTATGGTCCTTCTAGTCAGGGAAAAGAAGATGAGGATGATGGTAGAGAAGCTTCATCTGTGATTCTGTTGGTGGCATTTTTGACTGGTTTTTCTTTGCCACCAGAAGATGAAATCATTCGAATATATAACAAGTTTGGAGAGCTGAATGAAGAGGAAACAGAAGTGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E287818" ref_strand="+" ref_description="SGN-E287818 [cLES-19-H17]">
      <seq>tcgtctgtagaaacatccgagaagaaaaggaagaagtctggtgagaaagctaaaggtcaaactggcagctcgatgagtgttgatgaaaaaattggtaagagggtcaacaagaagtctggtgacagtgacttggtgaaaacaaagaaacttagtgtttcaattcctgagagtgatgaagttggcaaccagcaagacaatgcgggccctttatcaagggaaagaaagaagagcaagtatttgtcacctccttatacaagccccaagtggaatgcaggaaaatcaagctttaagagagaactggcaatagaatcacagaaattttctgataattccaagattggtgagaggatgacaaaggctgcacgtcttcttttgtcttctcctgattcgaatgggaaagaggccttcaaggatgacgttgacaagagttctgggatcaataagcgaagctctaggacttttgataccgtggctatcaattcatctgtggatgaagttttgtccgaggttcagtctactgctctaaaccctcttctgttgaggaatggatctcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="83451" stop="82295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83151" g_stop="82595" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="557" r_length="557" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E287818" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83151" e_stop="82595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTCTGTAGAAACATCCGAGAAGAAAAGGAAGAAGTCTGGTGAGAAAGCTAAAGGTCAAACTGGCAGCTCGATGAGTGTTGATGAAAAAATTGGTAAGAGGGTCAACAAGAAGTCTGGTGACAGTGACTTGGTGAAAACAAAGAAACTTAGTGTTTCAATTCCTGAGAGTGATGAAGTTGGCAACCAGCAAGACAATGCGGGCCCTTTATCAAGGGAAAGAAAGAAGAGCAAGTATTTGTCACCTCCTTATACAAGCCCCAAGTGGAATGCAGGAAAATCAAGCTTTAAGAGAGAACTGGCAATAGAATCACAGAAATTTTCTGATAATTCCAAGATTGGTGAGAGGATGACAAAGGCTGCACGTCTTCTTTTGTCTTCTCCTGATTCGAATGGGAAAGAGGCCTTCAAGGATGACGTTGACAAGAGTTCTGGGATCAATAAGCGAAGCTCTAGGACTTTTGATACCGTGGCTATCAATTCATCTGTGGATGAAGTTTTGTCCGAGGTTCAGTCTACTGCTCTAAACCCTCTTCTGTTGAGGAATGGATCTCTTGA</genome_strand>
        <mrna_strand>TCGTCTGTAGAAACATCCGAGAAGAAAAGGAAGAAGTCTGGTGAGAAAGCTAAAGGTCAAACTGGCAGCTCGATGAGTGTTGATGAAAAAATTGGTAAGAGGGTCAACAAGAAGTCTGGTGACAGTGACTTGGTGAAAACAAAGAAACTTAGTGTTTCAATTCCTGAGAGTGATGAAGTTGGCAACCAGCAAGACAATGCGGGCCCTTTATCAAGGGAAAGAAAGAAGAGCAAGTATTTGTCACCTCCTTATACAAGCCCCAAGTGGAATGCAGGAAAATCAAGCTTTAAGAGAGAACTGGCAATAGAATCACAGAAATTTTCTGATAATTCCAAGATTGGTGAGAGGATGACAAAGGCTGCACGTCTTCTTTTGTCTTCTCCTGATTCGAATGGGAAAGAGGCCTTCAAGGATGACGTTGACAAGAGTTCTGGGATCAATAAGCGAAGCTCTAGGACTTTTGATACCGTGGCTATCAATTCATCTGTGGATGAAGTTTTGTCCGAGGTTCAGTCTACTGCTCTAAACCCTCTTCTGTTGAGGAATGGATCTCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E431618" ref_strand="+" ref_description="SGN-E431618 [STM-55-D12]">
      <seq>cttgaggacaagaaggaagatcaagtcattgatgcaaatgacttcagtatacccattgaggttcctattcagggtccatcagaagaagaaattcctaattctggatcttcaaagtttcctatgactgcttgcgacaagatttatcagaagaggaagcagaaaagtgtggctgaacttatgggagagaacgccaagcccaaaggtaagaagacaactgaagacgattctacaccttcatctgtagaaacatccgagaagaaaaggaagaagtctggtgagaaagctaaaggtcacactggcagctcgaagagtgttgatgaaaaaattggtaagagggtcagcaagaagtctggtgacagtgacttggtgaaaaacaagaaacttagtggtttcatttcctgagcgtgatgaacttggcgaccagcaagacatgaatgcgggccctctatcgagggaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="83682" stop="82653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83382" g_stop="82928" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="462" r_length="462" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E431618" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E431618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83382" e_stop="82928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGAGGACAAGAAGGAAGATCAAGTCATTGATGCAAATGACTTCAGCATACCCATTGAGGTTCCCATTCAGGGTCCATCAGAAG-A--AATTCCTAATTCTGGATCTTCAAAGTTTCCTATGACTGCCTGCGACAAGATTTATCAGAAGAGGAAGCAGAAAAGTGTGGCTGAACTTATGGGAGAGAACGCCAAGCCCAAAGGTAAGAAGACAACTGAAGACGATTCTACACCTTCGTCTGTAGAAACATCCGAGAAGAAAAGGAAGAAGTCTGGTGAGAAAGCTAAAGGTCAAACTGGCAGCTCGATGAGTGTTGATGAAAAAATTGGTAAGAGGGTCAACAAGAAGTCTGGTGACAGTGACTTGGTGAAAACAAAGAAACTTAGT-GTTTCAATTCCTGAGAGTGATGAAGTTGGCAACCAGCAAGAC---AATGCGGGCCCTTTATCAAGGGAAAGAAA</genome_strand>
        <mrna_strand>CTTGAGGACAAGAAGGAAGATCAAGTCATTGATGCAAATGACTTCAGTATACCCATTGAGGTTCCTATTCAGGGTCCATCAGAAGAAGAAATTCCTAATTCTGGATCTTCAAAGTTTCCTATGACTGCTTGCGACAAGATTTATCAGAAGAGGAAGCAGAAAAGTGTGGCTGAACTTATGGGAGAGAACGCCAAGCCCAAAGGTAAGAAGACAACTGAAGACGATTCTACACCTTCATCTGTAGAAACATCCGAGAAGAAAAGGAAGAAGTCTGGTGAGAAAGCTAAAGGTCACACTGGCAGCTCGAAGAGTGTTGATGAAAAAATTGGTAAGAGGGTCAGCAAGAAGTCTGGTGACAGTGACTTGGTGAAAAACAAGAAACTTAGTGGTTTCATTTCCTGAGCGTGATGAACTTGGCGACCAGCAAGACATGAATGCGGGCCCTCTATCGAGGGAAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E464703" ref_strand="+" ref_description="SGN-E464703 [cPRO-18-H2]">
      <seq>cttgaggacaagaaggaagatcaagtcattgatgcaaatgacttcagtatacccattgaggttcctattcagggtccatcagaagaagaaattcctaattctggatcttcaaagtttcctatgactgcttgcgacaagatttatcagaagaggaagcagaaaagtgtggctgaacttatgggagagaacgccaagcccaaaggtaagaagacaactgaagacgattctacaccttcatctgtagaaacatccgagaagaaaaggaagaagtctggtgagaaagctaaaggtcacactggcagctcgaagagtgttgatgaaaaaattggtaagagggtcagcaagaagtctggtgacagtgacttggtgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="83682" stop="82714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83382" g_stop="83014" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E464703" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E464703" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83382" e_stop="83014"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGAGGACAAGAAGGAAGATCAAGTCATTGATGCAAATGACTTCAGCATACCCATTGAGGTTCCCATTCAGGGTCCATCAGAAG-A--AATTCCTAATTCTGGATCTTCAAAGTTTCCTATGACTGCCTGCGACAAGATTTATCAGAAGAGGAAGCAGAAAAGTGTGGCTGAACTTATGGGAGAGAACGCCAAGCCCAAAGGTAAGAAGACAACTGAAGACGATTCTACACCTTCGTCTGTAGAAACATCCGAGAAGAAAAGGAAGAAGTCTGGTGAGAAAGCTAAAGGTCAAACTGGCAGCTCGATGAGTGTTGATGAAAAAATTGGTAAGAGGGTCAACAAGAAGTCTGGTGACAGTGACTTGGTGAAA</genome_strand>
        <mrna_strand>CTTGAGGACAAGAAGGAAGATCAAGTCATTGATGCAAATGACTTCAGTATACCCATTGAGGTTCCTATTCAGGGTCCATCAGAAGAAGAAATTCCTAATTCTGGATCTTCAAAGTTTCCTATGACTGCTTGCGACAAGATTTATCAGAAGAGGAAGCAGAAAAGTGTGGCTGAACTTATGGGAGAGAACGCCAAGCCCAAAGGTAAGAAGACAACTGAAGACGATTCTACACCTTCATCTGTAGAAACATCCGAGAAGAAAAGGAAGAAGTCTGGTGAGAAAGCTAAAGGTCACACTGGCAGCTCGAAGAGTGTTGATGAAAAAATTGGTAAGAGGGTCAGCAAGAAGTCTGGTGACAGTGACTTGGTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E287766" ref_strand="-" ref_description="SGN-E287766 [cLES-19-E9]">
      <seq>tttttttttttttttttttttttttttttttnnnnnangcagaatcataaatattgattttagaaaattgggtacaactatctaatagctgaatgctcttacaaaaacaaaaaaaaactcagtaatttttcccagttcaaaaaaaaaaaaaggaataagaatgaacatttaccacaaattgatttaagcaatagagactttagcaccagcttcttcgagctgtttcttagcatcttcagcctcatccttggaaacaccctccttaaatttcttaggcaatccttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="+" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="79488" stop="87466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85554" g_stop="85591" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.500"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85592" i_stop="86918" i_length="1327">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86919" g_stop="87166" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="286" r_length="248" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="+" ref_id="SGN-E287766" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287766" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="85554" e_stop="85591"/>
          <exon e_start="86919" e_stop="87166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTTAGTTGTATTTATCTGTTTTACTTCATGATATATATTCTTGTATTAACCCTATGCCTTGGTCTTTTAGCACATTTTTTGGTTTTCCATTATCTCGTTGCTGAATTCTGAACCTTCTTGTATAGCTCTATTCGAAGAGTAGTATCAATGACTACTTTTTCTCCTAAAAACCAAATATTTGAAACAATTTAATATACAACATTTATAAATTTCAAGAATTTTTTAAAATACAGTAGAAGAAGAATACACTAAACTAGTCTGGTAATATAACCAAGTTATAGCTACAAAGTCATTTAAAAACTAAACCCTATATACACAATGAAAATTCCGTACAAATATTTTGCAAGAAATTGAGAAGTAGAATTCCAAAAATTTCAAGAATTTAAAAATCATCCGAAGAAAAGTATAACTCACAAAAATCTTAAAAACCTCATTATTCAAATATTATTTTTCACTTTGAAAATAAAAATTACTTTTTTATCATATACTCACAATTTTTACGACCAAATATTTCTGAAATTCGTCCCTTTTTTTCGATGATCTCATAAATACAAGAAAGTACATCCTAATTGTGTTGCCAAACATGTTACTAACTTAGTTCTGAAAACAGGCTTCCTACTACAGATAGGTTGTCTAAATGGAGATTGTATTCACATACAATCATTCTATGTGAATACAATGTATAAATTCTGTCAAACACACTCGAAAAATAGAGAACATCTTTATCTTCTGTAATTTTGACTTGGATCAATAGACCAAGTTTCATTGCTAACACATGTTTGCAGCACTTAGATTGAGCAATCAACAACTCCAAAGGTAAGTCTCAAAGTGCTTAACTAAACAGAATATTATATGCTAAATGCATTCATGCTCTGTGGATGGAGAGAAACCAGACAACATTTTAAGCCCACTGTGATTATATAGCCAAAGAAGTAGCATTTATGGAGGCTGATGCATTCTCCAACAAATTCATTCAACATTGACTATTTGCCCTCTGTTGAAGGTGTTCTAAAAATCTGTGCTATCGTCTATCGAGTACATAGCTCAAACAAATGAATGAATTGGGTCAAACTTATGAAAACCAAAAAAATAAAATTGTACCAGTTATAAGTTTCATCTGCTAGGCTTCACTCTAGATTTTCATGTAAGATGGCACAGGCATGGCTTAGGTCAATTTTGGGACAAGAGATTTTTCAACTATTATTACAACTCATACAAACTTGAGGAAATAGACACCGGTGATATAAGTTACGAGCCTAGTGTTACTTTGAGCAAACTTGCGCGCACATTGACTATTTCATCGAGTACAATTTACGAGGATGAGAAGAAATTGAAACACACAATAACAATTACAAAATTATGCAGAATCATAAATATTGATTTTAGAAAATTGGGTACAACTATCTAATAGCTGAATGCTCTTACAAAAACAAAAAAAAACTCAGTAATTTTTCCCAGTTCAAAAAAAAAAAAAGGAATAAGAATGAACATTTACCACAAATTGATTTAAGCAATAGAGACTTTAGCACCAGCTTCTTCGAGCTGTTTCTTAGCATCTTCAGCCTCATCCTTGGAAACACCCTCCTTAAATTTCTTAGGCAATCCTTCA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNAN...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAATCATAAATATTGATTTTAGAAAATTGGGTACAACTATCTAATAGCTGAATGCTCTTACAAAAACAAAAAAAAACTCAGTAATTTTTCCCAGTTCAAAAAAAAAAAAAGGAATAAGAATGAACATTTACCACAAATTGATTTAAGCAATAGAGACTTTAGCACCAGCTTCTTCGAGCTGTTTCTTAGCATCTTCAGCCTCATCCTTGGAAACACCCTCCTTAAATTTCTTAGGCAATCCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E616179" ref_strand="+" ref_description="SGN-E616179 [65986]">
      <seq>cgatgaagtgccgagtaatgctagaattgcgactattaaggctgttagggctttaacaagtttggctttgaaagaagctaaggaattgatcgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacagctagaagaagctggtgctaaagtttctattgcttaaatgagtttgtggtaaatgttcattcttatttggttttgattatctgggcaaattactgtaagtttttgtgtttttgcaagagaattcagttgttagatagttgtacccaattttctaaaatctagatttttcacccctttttgcttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="91653" stop="79502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87256" g_stop="86935" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="0.904"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86934" i_stop="86850" i_length="85">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.572" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86849" g_stop="86824" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="342" r_length="26" r_score="0.577"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86823" i_stop="85721" i_length="1103">
            <donor d_prob="0.180" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85720" g_stop="85706" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="357" r_length="15" r_score="0.533"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E616179" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="1.017" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E616179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87256" e_stop="86935"/>
          <exon e_start="86849" e_stop="86824"/>
          <exon e_start="85720" e_stop="85706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGAACTGGGAAAAATTACTGAGTTTTTTTTTGTTTTTGTAAGAGCATTCAGCTATTAGATAGTTGTACCCAATTTTCTAAAATCAATATTTATGATTCTGCATAATTTTGTAATTGTTATTGTGTGTTTCAATTTCTTCTCATCCTCGTAAATTGTACTCGATGAAATAGTCAATGTGCGCGCAAGTTTGCTCAAAGTAACACTAGGCTCGTAACTTATATCACCGGTGTCTATTTCCTCAAGTTTGTATGAGTTGTAATAATAGTTGAAAAATCTCTTGTCCCAAAATTGACCTAAGCCATGCCTGTGCCATCTTACATGAAAATCTAGAGTGAAGCCTAGCAGATGAAACTTATAACTGGTACAATTTTATTTTTTTGGTTTTCATAAGTTTGACCCAATTCATTCATTTGTTTGAGCTATGTACTCGATAGACGATAGCACAGATTTTTAGAACACCTTCAACAGAGGGCAAATAGTCAATGTTGAATGAATTTGTTGGAGAATGCATCAGCCTCCATAAATGCTACTTCTTTGGCTATATAATCACAGTGGGCTTAAAATGTTGTCTGGTTTCTCTCCATCCACAGAGCATGAATGCATTTAGCATATAATATTCTGTTTAGTTAAGCACTTTGAGACTTACCTTTGGAGTTGTTGATTGCTCAATCTAAGTGCTGCAAACATGTGTTAGCAATGAAACTTGGTCTATTGATCCAAGTCAAAATTACAGAAGATAAAGATGTTCTCTATTTTTCGAGTGTGTTTGACAGAATTTATACATTGTATTCACATAGAATGATTGTATGTGAATACAATCTCCATTTAGACAACCTATCTGTAGTAGGAAGCCTGTTTTCAGAACTAAGTTAGTAACATGTTTGGCAACACAATTAGGATGTACTTTCTTGTATTTATGAGATCATCGAAAAAAAGGGACGAATTTCAGAAATATTTGGTCGTAAAAATTGTGAGTATATGATAAAAAAGTAATTTTTATTTTCAAAGTGAAAAATAATATTTGAATAATGAGGTTTTTAAGATTTTTGTGAGTTATACTTTTCTTCGGATGATTTTTAAATTCTTGAAATTTTTGGAATTCTACTTCTCAATTTCTTGCAAAATATTTGTACGGAATTTTCATTGTGTATATAGGGTTTAGTTTTTAAATGACTTTGTAGCTATAACTTGGTTATATTACCAGACTAGTTTAGTGTATTCTTCTTCTACTGTATTTTAAAAAATTCTTGAAATTTATAAATGTTGTATATTAAATTGTTTCAAATATTTGGTTTTTAGGAGAAAAAGTAGTCA</genome_strand>
        <mrna_strand>CGATGAAGTGCCGAGTAATGCTAGAATTGCGACTATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCTTTGAAAGAAGCTAAGGAATTGATCGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTAGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAATGAGTTTGTGGTAAATGTTCATTCTTA----TTTGGTTTTGATT-ATCTGGG-CAAATTACTGTAAGTTTTTGTGTTTTTGCAAGAGAATTCAGTTGTTAGATAGTTGTACCCAATTTTCTAAAATCT.....................................................................................AGATTTTTCACCCCTTTTTGCTTAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E280479" ref_strand="+" ref_description="SGN-E280479 [cLER-1-C19](-)">
      <seq>gaaggtagtccagctcggggatgaaatctccactttaaccctagctgacgcccagaaactggttgagtaccttcaggataagcttggtgtttcagccgcatccttcgctcctgctgccgttgtcgctgcccctggtggcgcagccgcagatgctccagctgtggttgaagagaagccggaatttgacgtagtcatcgatgaagtgccgagtaatgctagaattgctaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacagctcgaagaagctggtgctaaagtctctattgcttaaatcaatttgtggtaaatgttcattcttattccttttttttttttttgaactgggaaaaattactgagtttttttttgtttttgtaagagcattcagctattagatagttgtacccaattttctaaaatcaatatttatgattctgcataattttgtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="87751" stop="13982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87451" g_stop="86905" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="548" r_length="548" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86904" i_stop="85721" i_length="1184">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.977" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85720" g_stop="85713" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="556" r_length="8" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E280479" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87451" e_stop="86905"/>
          <exon e_start="85720" e_stop="85713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCC-TTTTTTTTTTTTTGAACTGGGAAAAATTACTGAGTTTTTTTTTGTTTTTGTAAGAGCATTCAGCTATTAGATAGTTGTACCCAATTTTCTAAAATCAATATTTATGATTCTGCATAATTTTGTAATTGTTATTGTGTGTTTCAATTTCTTCTCATCCTCGTAAATTGTACTCGATGAAATAGTCAATGTGCGCGCAAGTTTGCTCAAAGTAACACTAGGCTCGTAACTTATATCACCGGTGTCTATTTCCTCAAGTTTGTATGAGTTGTAATAATAGTTGAAAAATCTCTTGTCCCAAAATTGACCTAAGCCATGCCTGTGCCATCTTACATGAAAATCTAGAGTGAAGCCTAGCAGATGAAACTTATAACTGGTACAATTTTATTTTTTTGGTTTTCATAAGTTTGACCCAATTCATTCATTTGTTTGAGCTATGTACTCGATAGACGATAGCACAGATTTTTAGAACACCTTCAACAGAGGGCAAATAGTCAATGTTGAATGAATTTGTTGGAGAATGCATCAGCCTCCATAAATGCTACTTCTTTGGCTATATAATCACAGTGGGCTTAAAATGTTGTCTGGTTTCTCTCCATCCACAGAGCATGAATGCATTTAGCATATAATATTCTGTTTAGTTAAGCACTTTGAGACTTACCTTTGGAGTTGTTGATTGCTCAATCTAAGTGCTGCAAACATGTGTTAGCAATGAAACTTGGTCTATTGATCCAAGTCAAAATTACAGAAGATAAAGATGTTCTCTATTTTTCGAGTGTGTTTGACAGAATTTATACATTGTATTCACATAGAATGATTGTATGTGAATACAATCTCCATTTAGACAACCTATCTGTAGTAGGAAGCCTGTTTTCAGAACTAAGTTAGTAACATGTTTGGCAACACAATTAGGATGTACTTTCTTGTATTTATGAGATCATCGAAAAAAAGGGACGAATTTCAGAAATATTTGGTCGTAAAAATTGTGAGTATATGATAAAAAAGTAATTTTTATTTTCAAAGTGAAAAATAATATTTGAATAATGAGGTTTTTAAGATTTTTGTGAGTTATACTTTTCTTCGGATGATTTTTAAATTCTTGAAATTTTTGGAATTCTACTTCTCAATTTCTTGCAAAATATTTGTACGGAATTTTCATTGTGTATATAGGGTTTAGTTTTTAAATGACTTTGTAGCTATAACTTGGTTATATTACCAGACTAGTTTAGTGTATTCTTCTTCTACTGTATTTTAAAAAATTCTTGAAATTTATAAATGTTGTATATTAAATTGTTTCAAATATTTGGTTTTTAGGAGAAAAA</genome_strand>
        <mrna_strand>GAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGCCGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTTGAACTGGGAAAAATTACTGAGTTTTTTTTTGTTTTTGTAAGAGCATTCAGCTATTAGATAGTTGTACCCAATTTTCTAAAATCAATATTTATGATTCTGCATAATTTTGTAAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E293515" ref_strand="+" ref_description="SGN-E293515 [cLET-15-J16]">
      <seq>tcgctcctgctgccgttgtcgctgcccctggtggcgcagccgcagatgctccagctgtggttgaagagaagacggaatttgacgtagtcatcgatgaagtgccgagtaatgctagaattgctaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacagctcgaagaagctggtgctaaagtctctattgcttaaatcaatttgtggtaaatgttcattcttattcctttttttttttttgaactgggaaaaattactgagtttttttttgtttttgtaagagcattcagctattagatagttgtacccaattttctaaaatcaatatttatgattctgcataattttgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="87647" stop="13982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87347" g_stop="86905" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86904" i_stop="85721" i_length="1184">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.977" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85720" g_stop="85714" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="450" r_length="7" r_score="0.714"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E293515" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87347" e_stop="86905"/>
          <exon e_start="85720" e_stop="85714"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGAACTGGGAAAAATTACTGAGTTTTTTTTTGTTTTTGTAAGAGCATTCAGCTATTAGATAGTTGTACCCAATTTTCTAAAATCAATATTTATGATTCTGCATAATTTTGTAATTGTTATTGTGTGTTTCAATTTCTTCTCATCCTCGTAAATTGTACTCGATGAAATAGTCAATGTGCGCGCAAGTTTGCTCAAAGTAACACTAGGCTCGTAACTTATATCACCGGTGTCTATTTCCTCAAGTTTGTATGAGTTGTAATAATAGTTGAAAAATCTCTTGTCCCAAAATTGACCTAAGCCATGCCTGTGCCATCTTACATGAAAATCTAGAGTGAAGCCTAGCAGATGAAACTTATAACTGGTACAATTTTATTTTTTTGGTTTTCATAAGTTTGACCCAATTCATTCATTTGTTTGAGCTATGTACTCGATAGACGATAGCACAGATTTTTAGAACACCTTCAACAGAGGGCAAATAGTCAATGTTGAATGAATTTGTTGGAGAATGCATCAGCCTCCATAAATGCTACTTCTTTGGCTATATAATCACAGTGGGCTTAAAATGTTGTCTGGTTTCTCTCCATCCACAGAGCATGAATGCATTTAGCATATAATATTCTGTTTAGTTAAGCACTTTGAGACTTACCTTTGGAGTTGTTGATTGCTCAATCTAAGTGCTGCAAACATGTGTTAGCAATGAAACTTGGTCTATTGATCCAAGTCAAAATTACAGAAGATAAAGATGTTCTCTATTTTTCGAGTGTGTTTGACAGAATTTATACATTGTATTCACATAGAATGATTGTATGTGAATACAATCTCCATTTAGACAACCTATCTGTAGTAGGAAGCCTGTTTTCAGAACTAAGTTAGTAACATGTTTGGCAACACAATTAGGATGTACTTTCTTGTATTTATGAGATCATCGAAAAAAAGGGACGAATTTCAGAAATATTTGGTCGTAAAAATTGTGAGTATATGATAAAAAAGTAATTTTTATTTTCAAAGTGAAAAATAATATTTGAATAATGAGGTTTTTAAGATTTTTGTGAGTTATACTTTTCTTCGGATGATTTTTAAATTCTTGAAATTTTTGGAATTCTACTTCTCAATTTCTTGCAAAATATTTGTACGGAATTTTCATTGTGTATATAGGGTTTAGTTTTTAAATGACTTTGTAGCTATAACTTGGTTATATTACCAGACTAGTTTAGTGTATTCTTCTTCTACTGTATTTTAAAAAATTCTTGAAATTTATAAATGTTGTATATTAAATTGTTTCAAATATTTGGTTTTTAGGAGAAAA</genome_strand>
        <mrna_strand>TCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGAACTGGGAAAAATTACTGAGTTTTTTTTTGTTTTTGTAAGAGCATTCAGCTATTAGATAGTTGTACCCAATTTTCTAAAATCAATATTTATGATTCTGCATAATTTTGTAAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E734200" ref_strand="+" ref_description="SGN-E734200 [LB12AB11]">
      <seq>atttcctctcctcaatttctcttttgctctgctacaatggcttccacattatccactattgccctttgttcaccttctcacatttccccctccacacacgcttcaatttctttccccaccaaaaccctacaactccccattcgcacttccaaactccaccaccgccgagccacttttgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggggatgaaatctccactttaaccctagctgacgcccagaaactggttgagtaccttcaggataagcttggtgtttcagccgcatccttcgctcctgctgccgttgtcgctgcccctggtggcgcagccgcagatgctccagctgtggttgaagagaagacggaatttgacgtagtcatcgatgaagtgccgagtaatgctagaattgctaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacagctcgaagaagctggtgctaaagtctctattgcttaaatcaatttgtggtaaatgttcattcttattcctttttttttttttgaactgggaaaaattactgagtttttttttgtttttgaaaaagcattcagctattagatagttgtacccaattttctaaaatcaatatttatgattcggcataattttgaaattgttattgggggttccaattaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="87960" stop="86586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87660" g_stop="86899" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="762" r_length="762" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="776" polyA_stop="790"/>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E734200" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87660" e_stop="86899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCCTCTCCTCAATTTCTCTTTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGAACTGGGAAAAATTACTGAGTTTTTTTTTGTTTTTGTAAGAGCATTCAGCTATTAGATAGTTGTACCCAATTTTCTAAAATCAATATTTATGATTCTGCATAATTTTGTAATTGTTATT</genome_strand>
        <mrna_strand>ATTTCCTCTCCTCAATTTCTCTTTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGAACTGGGAAAAATTACTGAGTTTTTTTTTGTTTTTGAAAAAGCATTCAGCTATTAGATAGTTGTACCCAATTTTCTAAAATCAATATTTATGATTCGGCATAATTTTGAAATTGTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733193" ref_strand="+" ref_description="SGN-E733193 [LB04AH06]">
      <seq>gctccctctttcatttcctctcctcaatttctcttttgctctgctacaatggcttccacattatccactattgccctttgttcaccttctcacatttccccctccacacacgcttcaatttctttccccaccaaaaccctacaactccccattcgcacttccaaactccaccaccgccgagccacttttgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggggatgaaatctccactttaaccctagctgacgcccagaaactggttgagtaccttcaggataagcttggtgtttcagccgcatccttcgctcctgctgccgttgtcgctgcccctggtggcgcagccgcagatgctccagctgtggttgaagagaagacggaatttgacgtagtcatcgatgaagtgccgagtaatgctagaattgctaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacagctcgaagaagctggtgctaaagtctctattgcttaaatcaatttgtggtaaatgttcattcttattcctttttttttttttaaactggaaaaaattactgagtttttttttgtttttgtaaaaccattcacctattaaaaagttgtacccaattttctaaaatcaatatttatgattctgcataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="87972" stop="86615"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87672" g_stop="86906" g_length="767"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="767" r_length="767" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E733193" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87672" e_stop="86906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCCCTCTTTCATTTCCTCTCCTCAATTTCTCTTTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGAACTGGGAAAAATTACTGAGTTTTTTTTTGTTTTTGTAAGAGCATTCAGCTATTAGATAGTTGTACCCAATTTTCTAAAATCAATATTTATGATTCTGCATAATTTTGTAAT</genome_strand>
        <mrna_strand>GCTCCCTCTTTCATTTCCTCTCCTCAATTTCTCTTTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTAAACTGGAAAAAATTACTGAGTTTTTTTTTGTTTTTGTAAAACCATTCACCTATTAAAAAGTTGTACCCAATTTTCTAAAATCAATATTTATGATTCTGCATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E738950" ref_strand="+" ref_description="SGN-E738950 [LC15CC10]">
      <seq>gccctttgttcaccttctcacatttccccctccacacacgcttcaatttctttccccaccaaaaccctacaactccccattcgcacttccaaactccaccaccgccgagccacttttgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggggatgaaatctccactttaaccctagctgacgcccagaaactggttgagtaccttcaggataagcttggtgtttcagccgcatccttcgctcctgctgccgttgtcgctgcccctggtggcgcagccgcagatgctccagctgtggttgaagagaagacggaatttgacgtagtcatcgatgaagtgccgagtaatgctagaattgctaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacagctcgaagaagctggtgctaaagtctctattgcttaaatcaatttgtggtaaatgttcattcttattcctttttttttttttgaacggggaaaaattacggagttttttttgtttttgtaaaagcattcacctattaaatagttgtacccaattttctaaaatcaatatttatgattcggcaaaattttgtaaaaaaaaaaaaaaaaaaaaaacccccggggggggggcggggacccaattccccccaagggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="87900" stop="79498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87600" g_stop="86908" g_length="693"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="692" r_length="692" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E738950" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87600" e_stop="86908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGAACTGGGAAAAATTACTGAGTTTTTTTTTGTTTTTGTAAGAGCATTCAGCTATTAGATAGTTGTACCCAATTTTCTAAAATCAATATTTATGATTCTGCATAATTTTGTA</genome_strand>
        <mrna_strand>GCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGAACGGGGAAAAATTACGGAG-TTTTTTTTGTTTTTGTAAAAGCATTCACCTATTAAATAGTTGTACCCAATTTTCTAAAATCAATATTTATGATTCGGCAAAATTTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E390620" ref_strand="+" ref_description="SGN-E390620 [TUS-47-G10](-)">
      <seq>ccctccacacacgcttcaatttctttccccaccaaaaccgtacaactctccattcgcacttccaaactccaccaccgccgagccacttttgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggggatgaaatctccactttaaccctagctgacgcccagaaactggttgagtaccttcaggataagcttggtgtttcagccgcatccttcgctcctgctgccgttgtcgctgcccctggtggcgcagccgcagatgctccagctgtggttgaagagaagacggaatttgacgtagtcatcgatgaagtgccgagtaatgctagaattgctaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacagctcgaagaagctggtgctaaagtctctattgcttaaatcaatttgtggtaaatgttcattcttattcctttttttttttttgaactgggaaaaattactgagtttttttttgtttttgtaagagcattcagctattagatagttgtacccaattttctaaaatcaatatttatgattctgcataattttgtaacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="87873" stop="86607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87573" g_stop="86908" g_length="666"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="666" r_length="666" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="667" polyA_stop="679"/>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E390620" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390620" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87573" e_stop="86908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGAACTGGGAAAAATTACTGAGTTTTTTTTTGTTTTTGTAAGAGCATTCAGCTATTAGATAGTTGTACCCAATTTTCTAAAATCAATATTTATGATTCTGCATAATTTTGTA</genome_strand>
        <mrna_strand>CCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCGTACAACTCTCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGAACTGGGAAAAATTACTGAGTTTTTTTTTGTTTTTGTAAGAGCATTCAGCTATTAGATAGTTGTACCCAATTTTCTAAAATCAATATTTATGATTCTGCATAATTTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E293512" ref_strand="+" ref_description="SGN-E293512 [cLET-15-H16]">
      <seq>tcgctcctgctgccgttgtcgctgcccctggtggcgcagccgcagatgctccagctgtggttgaagagaagacggaatttgacgtagtcatcgatgaagtgccgagtaatgctagaattgctaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacagctcgaagaagctggtgctaaagtctctattgcttaaatcaatttgtggtaaatgttcattcttattcctttttttttttttgaactgggaaaaattactgagtttttttttgtttttgtaagagcattcagcttttagatagttgtacccaattttctaaaatcaataattatgattctgcttattttgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="87647" stop="86607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87347" g_stop="86908" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="440" polyA_stop="449"/>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E293512" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87347" e_stop="86908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGAACTGGGAAAAATTACTGAGTTTTTTTTTGTTTTTGTAAGAGCATTCAGCTATTAGATAGTTGTACCCAATTTTCTAAAATCAATATTTATGATTCTGCATAATTTTGTA</genome_strand>
        <mrna_strand>TCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGAACTGGGAAAAATTACTGAGTTTTTTTTTGTTTTTGTAAGAGCATTCAGCTTTTAGATAGTTGTACCCAATTTTCTAAAATCAATAATTATGATTCTGC-TTATTTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733416" ref_strand="+" ref_description="SGN-E733416 [LB04DG02]">
      <seq>cccatttcctctcctcaatttctcttttgctctgctacaatggcttccacattatccactattgccctttgttcaccttctcacatttccccctccacacacgcttcaatttctttccccaccaaaaccctacaactccccattcgcacttccaaactccaccaccgccgagccacttttgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggggatgaaatctccactttaaccctagctgacgcccagaaactggttgagtaccttcaggataagcttggtgtttcagccgcatccttcgctcctgctgccgttgtcgctgcccctggtggcgcagccgcagatgctccagctgtggttgaagagaagacggaatttgacgtagtcatcgatgaagtgccgagtaatgctagaattgctaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacagctcgaagaagctggtgctaaagtctctattgcttaaatcaatttgtggtaaatgttcattcttattcctttttttttttttgaactggaaaaaattactgagtttttttttgtttttgaaaaagcattcacctattaaatagttgtacccatttttcaaaaatcaatatttatgattcggcaaaattttgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="87961" stop="86607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87663" g_stop="86911" g_length="753"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="753" r_length="753" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="755" polyA_stop="769"/>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E733416" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87663" e_stop="86911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTTCCTCTCCTCAATTTCTCTTTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGAACTGGGAAAAATTACTGAGTTTTTTTTTGTTTTTGTAAGAGCATTCAGCTATTAGATAGTTGTACCCAATTTTCTAAAATCAATATTTATGATTCTGCATAATTTT</genome_strand>
        <mrna_strand>CCCATTTCCTCTCCTCAATTTCTCTTTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGAACTGGAAAAAATTACTGAGTTTTTTTTTGTTTTTGAAAAAGCATTCACCTATTAAATAGTTGTACCCATTTTTCAAAAATCAATATTTATGATTCGGCAAAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E738584" ref_strand="+" ref_description="SGN-E738584 [LC14AH04]">
      <seq>ctcaatttctcttttgctctgctacaatgggttccacattatccactattgccctttgttcaccttctcacatttccccctccacacacgcttcaatttctttccccaccaaaaccctacaactccccattcgcacttccaaactccaccaccgccgagccacttttgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggggatgaaatctccactttaaccctagctgacgcccagaaactggttgagtaccttcaggataagcttggtgtttcagccgcatccttcgctcctgctgccgttgtcgctgcccctggtggcgcagccgcagatgctccagctgtggttgaagagaagacggaatttgacgtagtcatcgatgaagtgccgagtaatgctagaattgctaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacagctcgaagaagctggtgctaaagtctctattgcttaaatcaatttgtggtaaatgttcattcttattcctttttttttttttggaacggggaaaaattacggagtttttttttgtttttgaaaaagcattcacctattaaaaagttgtacccaattttcaaaaatcaatatttatgattcggcaaaattttgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="87950" stop="86607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87650" g_stop="86911" g_length="740"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="741" r_length="741" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="743" polyA_stop="753"/>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E738584" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87650" e_stop="86911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAATTTCTCTTTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTT-GAACTGGGAAAAATTACTGAGTTTTTTTTTGTTTTTGTAAGAGCATTCAGCTATTAGATAGTTGTACCCAATTTTCTAAAATCAATATTTATGATTCTGCATAATTTT</genome_strand>
        <mrna_strand>CTCAATTTCTCTTTTGCTCTGCTACAATGGGTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGGAACGGGGAAAAATTACGGAGTTTTTTTTTGTTTTTGAAAAAGCATTCACCTATTAAAAAGTTGTACCCAATTTTCAAAAATCAATATTTATGATTCGGCAAAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E716386" ref_strand="+" ref_description="SGN-E716386 [FB16DF06]">
      <seq>cactattgccctttgttcaccttctcacatttccccctccacacacgcttcaatttctttccccaccaaaaccctacaactccccattcgcacttccaaactccaccaccgccgagccacttttgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggggatgaaatctccactttaaccctagctgacgcccagaaactggttgagtaccttcaggataagcttggtgtttcagccgcatccttcgctcctgctgccgttgtcgctgcccctggtggcgcagccgcagatgctccagctgtggttgaagagaagacggaatttgacgtagtcatcgatgaagtgccgagtaatgctagaattgctaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacagctcgaagaagctggtgctaaagtctctattgcttaaatcaatttgtggtaaatgttcattcttattcctttttttttttttgaacggggaaaaattactgagtttttttttgtttttgaaaaagcattcagctattaaatagtggtacccaattttctaaaatcaatatttatgattcggcataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="87907" stop="86615"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87607" g_stop="86916" g_length="692"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="692" r_length="692" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="693" polyA_stop="705"/>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E716386" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87607" e_stop="86916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGAACTGGGAAAAATTACTGAGTTTTTTTTTGTTTTTGTAAGAGCATTCAGCTATTAGATAGTTGTACCCAATTTTCTAAAATCAATATTTATGATTCTGCATA</genome_strand>
        <mrna_strand>CACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGAACGGGGAAAAATTACTGAGTTTTTTTTTGTTTTTGAAAAAGCATTCAGCTATTAAATAGTGGTACCCAATTTTCTAAAATCAATATTTATGATTCGGCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E734484" ref_strand="+" ref_description="SGN-E734484 [LB12DB09]">
      <seq>ctccctctttcatttcctctcctcaatttctcttttgctctgctacaatggcttccacattatccactattgccctttgttcaccttctcacatttccccctccacacacgcttcaatttctttccccaccaaaaccctacaactccccattcgcacttccaaactccaccaccgccgagccacttttgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggggatgaaatctccactttaaccctagctgacgcccagaaactggttgagtaccttcaggataagcttggtgtttcagccgcatccttcgctcctgctgccgttgtcgctgcccctggtggcgcagccgcagatgctccagctgtggttgaagagaagacggaatttgacgtagtcatcgatgaagtgccgagtaatgctagaattgctaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacagctcgaagaagctggtgctaaagtctctattgcttaaatcaatttgtggtaaatgttcattcttattcctttttttttttttgaactggaaaaaattactgagtttttttttgtttttgaaaaagcattcacctattaaatagttgaacccatttttctaaaatcaatatttatgattctgctttnnnaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="87971" stop="86617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87671" g_stop="86919" g_length="753"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="753" r_length="753" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="760" polyA_stop="774"/>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E734484" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87671" e_stop="86919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCTCTTTCATTTCCTCTCCTCAATTTCTCTTTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGAACTGGGAAAAATTACTGAGTTTTTTTTTGTTTTTGTAAGAGCATTCAGCTATTAGATAGTTGTACCCAATTTTCTAAAATCAATATTTATGATTCTGC</genome_strand>
        <mrna_strand>CTCCCTCTTTCATTTCCTCTCCTCAATTTCTCTTTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGAACTGGAAAAAATTACTGAGTTTTTTTTTGTTTTTGAAAAAGCATTCACCTATTAAATAGTTGAACCCATTTTTCTAAAATCAATATTTATGATTCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E738892" ref_strand="+" ref_description="SGN-E738892 [LC15BD02]">
      <seq>ctccctcttttatttcctctcctcaatttctcttttgctctgctacaatggcttccacattatccactattgccctttgttcaccttctcacatttccccctccacacacgcttcaatttctttccccaccaaaaccctacaactccccattcgcacttccaaactccaccaccgccgagccacttttgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggggatgaaatctccactttaaccctagctgacgcccagaaactggttgagtaccttcaggataagcttggtgtttcagccgcatccttcgctcctgctgccgttgtcgctgcccctggtggcgcagccgcagatgctccagctgtggttgaagagaagacggaatttgacgtagtcatcgatgaagtgccgagtaatgctagaattgctaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacagctcgaagaagctggtgctaaagtctctattgcttaaatcaatttgtggtaaatgttcattcttattcctttttttttttttgaactggaaaaaattacggagtttttttttgtttttgtaaaaccattcacctattaaatagttgtacccaattttcaaaaatcaatatttatgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="87971" stop="86623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87671" g_stop="86923" g_length="749"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="749" r_length="749" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E738892" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87671" e_stop="86923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCTCTTTCATTTCCTCTCCTCAATTTCTCTTTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGAACTGGGAAAAATTACTGAGTTTTTTTTTGTTTTTGTAAGAGCATTCAGCTATTAGATAGTTGTACCCAATTTTCTAAAATCAATATTTATGATT</genome_strand>
        <mrna_strand>CTCCCTCTTTTATTTCCTCTCCTCAATTTCTCTTTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGAACTGGAAAAAATTACGGAGTTTTTTTTTGTTTTTGTAAAACCATTCACCTATTAAATAGTTGTACCCAATTTTCAAAAATCAATATTTATGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E408596" ref_strand="+" ref_description="SGN-E408596 [PPI-11-H17]">
      <seq>ctagaactccccattggctctcccaaactccaccaccgccgagccactttcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtacagctcggagatgaaatctccactctaactctcgctgatgcgcagaaactcgttgagtaccttcaggataagcttggtgtttcggccgcatccttcgctcctgctgcggtcgtcgccgctcctggtggcgcagccgcagatgctccagctgtggttgaagagaagacggaatttgacgtagtcatcgatgaagtgccgagtaatgctagaattgcgactattaaggctgttagggctttaacaagtttggctttgaaagaagctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacagctagaagaagctggtgctaaagtttctattgcttaaatgagtttacggtaaatgttcattcttatttggttttgattatctgggcaaattactgtaagttttttgtgtttttgtaagagaattcagttgttagatagttgtacccaattttctaaaatcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="87834" stop="86632"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87534" g_stop="86926" g_length="609"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="604" r_length="604" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E408596" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E408596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87534" e_stop="86926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGAACTGGGAAAAATTACTG-AGTTTTTTTTTGTTTTTGTAAGAGCATTCAGCTATTAGATAGTTGTACCCAATTTTCTAAAATCAATATTTATG</genome_strand>
        <mrna_strand>CTAGAACTCCCCATTGGCTCTCCCAAACTCCACCACCGCCGAGCCACTTTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTACAGCTCGGAGATGAAATCTCCACTCTAACTCTCGCTGATGCGCAGAAACTCGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCGGCCGCATCCTTCGCTCCTGCTGCGGTCGTCGCCGCTCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACTATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCTTTGAAAGAAGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTAGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAATGAGTTTACGGTAAATGTTCATTCTTA----TTTGGTTTTGATT-ATCTGGG-CAAATTACTGTAAGTTTTTTGTGTTTTTGTAAGAGAATTCAGTTGTTAGATAGTTGTACCCAATTTTCTAAAATCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E407668" ref_strand="+" ref_description="SGN-E407668 [PPI-8-I17]">
      <seq>ctagaactccccattggctctcccaaactccaccaccgccgagccactttcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtacagctcggagatgaaatctccactctaactctcgctgatgcgcagaaactcgttgagtaccttcaggataagcttggtgtttcggccgcatccttcgctcctgctgcggtcgtcgccgctcctggtggcgcagccgcagatgctccagctgtggttgaagagaagacggaatttgacgtagtcatcgatgaagtgccgagtaatgctagaattgcgactattaaggctgttagggctttaacaagtttggctttgaaagaagctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacagctagaagaagctggtgctaaagtttctattgcttaaatgagtttacggtaaatgttcattcttatttggttttgattatctgggcaaattactgtaagttttttgtgtttttgtaagagaattcagttgttagatagttgtacccaaatttctaaaatcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="87834" stop="86632"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87534" g_stop="86927" g_length="608"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="603" r_length="603" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E407668" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E407668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87534" e_stop="86927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGAACTGGGAAAAATTACTG-AGTTTTTTTTTGTTTTTGTAAGAGCATTCAGCTATTAGATAGTTGTACCCAATTTTCTAAAATCAATATTTAT</genome_strand>
        <mrna_strand>CTAGAACTCCCCATTGGCTCTCCCAAACTCCACCACCGCCGAGCCACTTTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTACAGCTCGGAGATGAAATCTCCACTCTAACTCTCGCTGATGCGCAGAAACTCGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCGGCCGCATCCTTCGCTCCTGCTGCGGTCGTCGCCGCTCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACTATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCTTTGAAAGAAGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTAGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAATGAGTTTACGGTAAATGTTCATTCTTA----TTTGGTTTTGATT-ATCTGGG-CAAATTACTGTAAGTTTTTTGTGTTTTTGTAAGAGAATTCAGTTGTTAGATAGTTGTACCCAAATTTCTAAAATCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E614123" ref_strand="+" ref_description="SGN-E614123 [63906]">
      <seq>cactttcgtccgccctctcgccgccgtcgaagcacctgagaaggtagtacagctcggagatgaaatatccactctaaccctcgctgatgcccagaaactcgtcgagtaccttcaggataagcttggtgtttcagccgcatccttcgctcctgctgccgtcgtcgccgcccctggtggcgcagccgcagatgctccacctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtaccgagtaatgctagaattgcgactattaaggctgttagggctttaacaagtttggctttgaaagaagcgaaggaattgattgaaggattgcctaagaaatttacaggagggtgtttccaaggatgaggctgaagatgctaagaaacagctagaagaagctggtgctaaagtttctattgcttaaatgaatttgtggtaaatgttcattcttatttggttttgattatctgggcaaattactgtaagtttttgtgtttttgtaagagaattcagttgttagatagttgtacccaattttctaaaaaaaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="91886" stop="86632"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87490" g_stop="86931" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E614123" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E614123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87490" e_stop="86931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTA-AGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGAACTGGGAAAAATTACTGAGTTTTTTTTTGTTTTTGTAAGAGCATTCAGCTATTAGATAGTTGTACCCAATTTTCTAAAATCAATAT</genome_strand>
        <mrna_strand>CACTTTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCTGAGAAGGTAGTACAGCTCGGAGATGAAATATCCACTCTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTCGTCGCCGCCCCTGGTGGCGCAGCCGCAGATGCTCCACCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTACCGAGTAATGCTAGAATTGCGACTATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCTTTGAAAGAAGCGAAGGAATTGATTGAAGGATTGCCTAAGAAATTTACAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTAGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAATGAATTTGTGGTAAATGTTCATTCTTA----TTTGGTTTTGATT-ATCTGGG-CAAATTACTGTAAGTTTTTGTGTTTTTGTAAGAGAATTCAGTTGTTAGATAGTTGTACCCAATTTTCTAAAAAAAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E410418" ref_strand="+" ref_description="SGN-E410418 [PPI-16-P24]">
      <seq>ccgcaagctccacgtacgcatcaatttccttccctaccaaaaccctagaactccccattggctctcccaaactccaccaccgccgagccactttcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtacagctcggagatgaaatctccactctaactctcgctgatgcgcagaaactcgttgagtaccttcaggataagcttggtgtttcggccgcatccttcgctcctgctgcggtcgtcgccgctcctggtggcgcagccgcagatgctccagctgtggttgaagagaagacggaatttgacgtagtcatcgatgaagtgccgagtaatgctagaattgcgactattaaggctgttagggctttaacaagtttggctttgaaagaagctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacagctagaagaagctggtgctaaagtttctattgcttaaatgagtttacggtaaatgttcattcttatttggttttgattatctgggcaaattactgtaagttttttgtgtttttgtaagagaattcagttgttagatagttgtacccaattttctaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="91975" stop="86634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87578" g_stop="86933" g_length="646"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="641" r_length="641" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E410418" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E410418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87578" e_stop="86933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGAACTGGGAAAAATTACTG-AGTTTTTTTTTGTTTTTGTAAGAGCATTCAGCTATTAGATAGTTGTACCCAATTTTCTAAAATCAAT</genome_strand>
        <mrna_strand>CCGCAAGCTCCACGTACGCATCAATTTCCTTCCCTACCAAAACCCTAGAACTCCCCATTGGCTCTCCCAAACTCCACCACCGCCGAGCCACTTTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTACAGCTCGGAGATGAAATCTCCACTCTAACTCTCGCTGATGCGCAGAAACTCGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCGGCCGCATCCTTCGCTCCTGCTGCGGTCGTCGCCGCTCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACTATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCTTTGAAAGAAGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTAGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAATGAGTTTACGGTAAATGTTCATTCTTA----TTTGGTTTTGATT-ATCTGGG-CAAATTACTGTAAGTTTTTTGTGTTTTTGTAAGAGAATTCAGTTGTTAGATAGTTGTACCCAATTTTCTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E407643" ref_strand="+" ref_description="SGN-E407643 [PPI-8-E1]">
      <seq>ggcttccacattatccacaattacccttcgttctccctctcctatttctccagcaaccgcaagctccacgtacgcatcaatttccttccctaccaaaaccctagaactccccattggctctcccaaactccaccaccgccgagccactttcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtacagctcggagatgaaatctccactctaactctcgctgatgcgcagaaactcgttgagtaccttcaggataagcttggtgtttcggccgcatccttcgctcctgctgcggtcgtcgccgctcctggtggcgcagccgcagatgctccagctgtggttgaagagaagacggaatttgacgtagtcatcgatgaagtgccgagtaatgctagaattgcgactattaaggctgttagggctttaacaagtttggctttgaaagaagctaaggaattgattgaaggattgcctaagaaattaagggaggggtgtttccaaggatgaggctgaagatgctaagaaacagctagaagaagctggtgctaaagtttctattggctaaatgagtttacggtaaatgttcattcttatttgggttttgattatctgggcaaattactggtagtttttttgtggtttttgtaagagaattcaggttgtagaatagttgtccccaattttctaaaatcaagattattcaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="92031" stop="86627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91731" g_stop="91663" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91662" i_stop="87566" i_length="4097">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87565" g_stop="86935" g_length="631"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="700" r_length="631" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E407643" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E407643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91731" e_stop="91663"/>
          <exon e_start="87565" e_stop="86935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTATGATTTGTGATTGTTCCAGTTTTAATTGTTAGTGTGTTTGTTGTTTGATGACTTGGTCTCACAATCAGGCAGGCGAGCAGACATAATCTTAGCTTGAGCCTACTGTCGCACACCTCTGTTGAGTGTTAATAATGTGAGTGATATAACTAATTGGGATCACTCTATGCTTGAATTATGATCCAAAAATTATTGGTTCTTATGTTGATCAATCTCAACAATATGCAACTCCACTGTATAATATGAGTTAGGTTATCTCATTTTGGTCATGAAAAATAAGCTGATAACTGAAATGCAATCAACTGTTGAACCATGTGACCTCTCTGTACTCTGCTATAGTGCAAAGATCACAGGGCTTAAACCAGCAATTGAGGGCTATGGATTTCGCATTGACATTGAGTAGTTAAGCACAGCCATCAGAGGCTGTTGTTGTCAGATTCCAGTCTTGTACATGCTTGGCTGCATCAATTGATGCTTTTGCATACTATATTGTTGAAGAAGCATTTCCCCTACAACATTTTACACATCAATTCTAGTTGTGTCGTATTATTTTAGCTTTTACTTAATTCGGAATACTTAGCCTGAAATGGCTTACAAATATGTGTTGTCTTTTAGGGGATATATCAGTATCCCCAGAATGCTCTCTCATGTCCATAATGCTTATGACACTGGTAGCTGTAATAGGAGAAAAAGGCAGCTTCAAAATGTCTGTGAAGAAAGTAGTGAATTCATGCATTTTTTGTTTCAACGTCAGGCAGGCATTTTGAATGCTAAATCTCATACTTGAAAAGGAAAATTCTAGTTTGAAGTGAATAGCACTTAAACCTGTGACCAATTGACCATTTCAATTTGGAACTTGGTATAAATACAATACTATCTGCAAGATAGTTCTTTTTCTCTAGTAAAGATGATAGTTTAAGGATGGGAATATATCTCATTTGCTCCAAGAAGATTTTGCAGCCCCCTTTCATTAGGAAATCATTAAGGTTTTACGATAAATATAAATAGTACTCCCTCCGTCCGGTATTATTTGTCATGATTTTTATTTTTAGAGTCAAACCACAAAAATTTTGACTAACAATTTAAGATGTATTTTGCGATCATATTAATATGCAAAAAATTATAATTTGTAGTATTTTTTAATATAGTTTTAAAATATCTAATTTTTTGGTTCAAACTATCGAATTGTGATCTTATTTACCTTTAAAAATTAGTCAAATTAATTTTCGATAAATACAATATGACAAACAATTTCGAATAAATAATTCTGAACGGAGAAAGTAGTCTAGAACTATGAGTACACGAATATCGAAGCAGGGCATTTGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGAGTTCGATTCTCGGAATGCCCCGCTATTTTTTTTTATATTTTGGAACACCACTAAAAATATATATATCTAATTTGGTACTTAGGATCGAAAGAAAAATATATATTTAAATCTTCTTAATTTCATAGATATGTAAATTAGTGAGGTTAACGTTCTTCCAGCATCTCATTACATAAAGATGAGCCCCACCCACCCAATTAGAGGCTCCGAGGAATTAATAAATCAACAGAAAAAGCTCAAAAATATCTTAAATTATTTTTGAAATAGTTTATACTTACTTTTAAATTATATTTCGATTTAAAATTATCCTTCCCATCATACTATTGATCAAAAATATCCTTCTTGTTAACTGAAAATATTAAATGTCACATGTCATGCCACGTACATACCACAATTTCATTCATTCCACATAGACTAATATTCTTAATCCCACTTTTTTCCCTCATTTCTCAATTTCCATTTGAAACCAATTTCACGCCCCCATTTCCCCTCATTTCTCCATTTCCCTTAGAAACGATTTCATTCATTTCCCAAAAATTTCACTCATTTCTCCATTTCCCTTAGATGGATTAAAACTTATTTGAAATCATTTATGTTGGAGAGTCCTAACTAGAAAGTAAACTCTGTAATGGAAAAAGAAGTTAGTTTTCAGTATTTTCACACTGTAAATGGATAGATGATAACAGAATTTCAACTGAAAATAGAAGTAAAACCTAGAGATTTAATGTCTTACTTGACTCTAGGAAACTTGATTATTACTTCTCAGGAAAATTTTAAAAATATGAGAAATTTTGTGAGGAATTTTCATGAATTGCACTCTACATAGTTAGTTATAACTATTCTAGACAGTTACATCAATGTAAATGAATTATCCAGTAACATTATTCACTATAGTTTGAAAAACAAACACTTGCCATTACTCAATCCACTAAGCCATGAAATTGAACATGTAAACAGAAATAAGCTAAAACTAAGACAATGTTACTGCAATGAGTGGAAAATTAGGGAGATGGATTAAATCATTTATAAGGGAATTAGAGAAATGAGGGGGAAAGGGGTGGGTGAAATGGCGGCTTCAAATGGAAATTGAGTAATGAGGGGAAAAATTTGGGATCAGGAGTATTCGTCTATATGGAAATGAATGAAATTATTGTGCTTACGTGCATGTCGGTATTTATCAGTTTCAGTTAATAAGAAGGGTATTTTTGATTCAATAGTATAATCAAAAGGATAGTTTTGAATCGAAATATAGTTTAAGAATATATATGAGCTATTTCAAATAGTTTAAAGGTATTGTTAAGCCTTTTTCGTAAATCAAATAATATTCAACGGAGAGCCTTAGTGATTACTTTCTCCGTTTAAAAAAGAATGTCCATATTTCTTTTTTAGTTTGTTTAAAAAAGAATTACCCCTTTCCTTCTTTGACAATAATTTAACTTTAACTTTTCACATGTCATGTTTAAGAACACAAGATTAAAGGACACTTTGATACATTTACATAACTTTAATTTAGACACAAAATTAATAAAATCTTTTTTTTTTCTTAAATTCTATTCCATATCAAACTATATCATATTTTTAAAATGGAGGATGTAATATATATACTATTAATTTTTTTTAAAACAGGTAAATAAGAGAGAGAAAATCTCTCAAATTCACATTCTTGTGGAGTTTCCCAAGGTTGGATTTTTTAAAGAAATTATTACTACAGCGAAATAGTAATATTAGTGTTTATTATAAATATTAAATTATTTTAGTTTAGCTTAGTTTATATCTCTAAAAAGTAAAAACCTACGAAGAGCCTGTTTGAATTGGTGTTTAGTTTGACTTATTTTTTTTTAATCATTTTAGTTTAATTTAGCTCGTTAAAAATAAGTGAATCAGGCCCTCACTAAATTTCTTTTTTCTCCAATAAAATTTCAATAATAATGGATTAAAATAAAAAATAAAAAAATGAGACCCTATATATAACCTTATCAACACAATATTCATTCCTCTTATCCTATTTTTTCTTGCTCCCTCTTTCATTTCCTCTCCTCAATTTCTCTTTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGA-GGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGAACTGGGAAAAATTACT-G-AGTTTTTTT-TTGTTTTTGTAAGAGCATTCAGCTATTAG-ATAGTTGTACCCAATTTTCTAAAATCA</genome_strand>
        <mrna_strand>GGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGCATCAATTTCCTTCCCTACCAAAACCCTAGAACTCCCCATTGGCTCTCCCAAACTCCACCACCGCCGAGCCACTTTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTACAGCTCGGAGATGAAATCTCCACTCTAACTCTCGCTGATGCGCAGAAACTCGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCGGCCGCATCCTTCGCTCCTGCTGCGGTCGTCGCCGCTCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACTATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCTTTGAAAGAAGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTAAGGGAGGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTAGAAGAAGCTGGTGCTAAAGTTTCTATTGGCTAAATGAGTTTACGGTAAATGTTCATTCTTA-T--TTGGGTTTTGATT-ATCTGGG-CAAATTACTGGTAGTTTTTTTGTGGTTTTTGTAAGAGAATTCAGGTTGTAGAATAGTTGTCCCCAATTTTCTAAAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E615458" ref_strand="+" ref_description="SGN-E615458 [65257]">
      <seq>ctcaattcctctttagctctgctacaatggcttccacattatccacaattacccttcgttctccctctcctatttctccagcaaccgcaagctccacgcacgcatcaatttccttccctaccaaaaccctagaactccccattggttcgcccaaactccaccaccgccgagccactttcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtacagcttggagatgaaatctccactctaactctcgctgatgcgcagaaactcgttgagtaccttcaggataagcttggtgtttcagccgcatccttcgctcctgctgcggtcgtcgccgctcctggtggcgcagccgcagatgctccagctgtggttgaagagaagacggaatttgacgtagtcatcgatgaagtgccgagtaatgctagaattgcgactattaaggctgttagggctttaacaagtttggctttgaaagaagctaaggaattgatcgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacagctagaagaagctggtgctaaagtttctattgcttaaatgagtttgtggtaaatgttcattcttatttggttttgattatctgggcaaattactgtaagcttctgtgtttttgcaagagaattcagttgtcagatagttgtacccaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="92059" stop="86645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91759" g_stop="91663" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91662" i_stop="87566" i_length="4097">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87565" g_stop="86945" g_length="621"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="712" r_length="615" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E615458" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E615458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91759" e_stop="91663"/>
          <exon e_start="87565" e_stop="86945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTATGATTTGTGATTGTTCCAGTTTTAATTGTTAGTGTGTTTGTTGTTTGATGACTTGGTCTCACAATCAGGCAGGCGAGCAGACATAATCTTAGCTTGAGCCTACTGTCGCACACCTCTGTTGAGTGTTAATAATGTGAGTGATATAACTAATTGGGATCACTCTATGCTTGAATTATGATCCAAAAATTATTGGTTCTTATGTTGATCAATCTCAACAATATGCAACTCCACTGTATAATATGAGTTAGGTTATCTCATTTTGGTCATGAAAAATAAGCTGATAACTGAAATGCAATCAACTGTTGAACCATGTGACCTCTCTGTACTCTGCTATAGTGCAAAGATCACAGGGCTTAAACCAGCAATTGAGGGCTATGGATTTCGCATTGACATTGAGTAGTTAAGCACAGCCATCAGAGGCTGTTGTTGTCAGATTCCAGTCTTGTACATGCTTGGCTGCATCAATTGATGCTTTTGCATACTATATTGTTGAAGAAGCATTTCCCCTACAACATTTTACACATCAATTCTAGTTGTGTCGTATTATTTTAGCTTTTACTTAATTCGGAATACTTAGCCTGAAATGGCTTACAAATATGTGTTGTCTTTTAGGGGATATATCAGTATCCCCAGAATGCTCTCTCATGTCCATAATGCTTATGACACTGGTAGCTGTAATAGGAGAAAAAGGCAGCTTCAAAATGTCTGTGAAGAAAGTAGTGAATTCATGCATTTTTTGTTTCAACGTCAGGCAGGCATTTTGAATGCTAAATCTCATACTTGAAAAGGAAAATTCTAGTTTGAAGTGAATAGCACTTAAACCTGTGACCAATTGACCATTTCAATTTGGAACTTGGTATAAATACAATACTATCTGCAAGATAGTTCTTTTTCTCTAGTAAAGATGATAGTTTAAGGATGGGAATATATCTCATTTGCTCCAAGAAGATTTTGCAGCCCCCTTTCATTAGGAAATCATTAAGGTTTTACGATAAATATAAATAGTACTCCCTCCGTCCGGTATTATTTGTCATGATTTTTATTTTTAGAGTCAAACCACAAAAATTTTGACTAACAATTTAAGATGTATTTTGCGATCATATTAATATGCAAAAAATTATAATTTGTAGTATTTTTTAATATAGTTTTAAAATATCTAATTTTTTGGTTCAAACTATCGAATTGTGATCTTATTTACCTTTAAAAATTAGTCAAATTAATTTTCGATAAATACAATATGACAAACAATTTCGAATAAATAATTCTGAACGGAGAAAGTAGTCTAGAACTATGAGTACACGAATATCGAAGCAGGGCATTTGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGAGTTCGATTCTCGGAATGCCCCGCTATTTTTTTTTATATTTTGGAACACCACTAAAAATATATATATCTAATTTGGTACTTAGGATCGAAAGAAAAATATATATTTAAATCTTCTTAATTTCATAGATATGTAAATTAGTGAGGTTAACGTTCTTCCAGCATCTCATTACATAAAGATGAGCCCCACCCACCCAATTAGAGGCTCCGAGGAATTAATAAATCAACAGAAAAAGCTCAAAAATATCTTAAATTATTTTTGAAATAGTTTATACTTACTTTTAAATTATATTTCGATTTAAAATTATCCTTCCCATCATACTATTGATCAAAAATATCCTTCTTGTTAACTGAAAATATTAAATGTCACATGTCATGCCACGTACATACCACAATTTCATTCATTCCACATAGACTAATATTCTTAATCCCACTTTTTTCCCTCATTTCTCAATTTCCATTTGAAACCAATTTCACGCCCCCATTTCCCCTCATTTCTCCATTTCCCTTAGAAACGATTTCATTCATTTCCCAAAAATTTCACTCATTTCTCCATTTCCCTTAGATGGATTAAAACTTATTTGAAATCATTTATGTTGGAGAGTCCTAACTAGAAAGTAAACTCTGTAATGGAAAAAGAAGTTAGTTTTCAGTATTTTCACACTGTAAATGGATAGATGATAACAGAATTTCAACTGAAAATAGAAGTAAAACCTAGAGATTTAATGTCTTACTTGACTCTAGGAAACTTGATTATTACTTCTCAGGAAAATTTTAAAAATATGAGAAATTTTGTGAGGAATTTTCATGAATTGCACTCTACATAGTTAGTTATAACTATTCTAGACAGTTACATCAATGTAAATGAATTATCCAGTAACATTATTCACTATAGTTTGAAAAACAAACACTTGCCATTACTCAATCCACTAAGCCATGAAATTGAACATGTAAACAGAAATAAGCTAAAACTAAGACAATGTTACTGCAATGAGTGGAAAATTAGGGAGATGGATTAAATCATTTATAAGGGAATTAGAGAAATGAGGGGGAAAGGGGTGGGTGAAATGGCGGCTTCAAATGGAAATTGAGTAATGAGGGGAAAAATTTGGGATCAGGAGTATTCGTCTATATGGAAATGAATGAAATTATTGTGCTTACGTGCATGTCGGTATTTATCAGTTTCAGTTAATAAGAAGGGTATTTTTGATTCAATAGTATAATCAAAAGGATAGTTTTGAATCGAAATATAGTTTAAGAATATATATGAGCTATTTCAAATAGTTTAAAGGTATTGTTAAGCCTTTTTCGTAAATCAAATAATATTCAACGGAGAGCCTTAGTGATTACTTTCTCCGTTTAAAAAAGAATGTCCATATTTCTTTTTTAGTTTGTTTAAAAAAGAATTACCCCTTTCCTTCTTTGACAATAATTTAACTTTAACTTTTCACATGTCATGTTTAAGAACACAAGATTAAAGGACACTTTGATACATTTACATAACTTTAATTTAGACACAAAATTAATAAAATCTTTTTTTTTTCTTAAATTCTATTCCATATCAAACTATATCATATTTTTAAAATGGAGGATGTAATATATATACTATTAATTTTTTTTAAAACAGGTAAATAAGAGAGAGAAAATCTCTCAAATTCACATTCTTGTGGAGTTTCCCAAGGTTGGATTTTTTAAAGAAATTATTACTACAGCGAAATAGTAATATTAGTGTTTATTATAAATATTAAATTATTTTAGTTTAGCTTAGTTTATATCTCTAAAAAGTAAAAACCTACGAAGAGCCTGTTTGAATTGGTGTTTAGTTTGACTTATTTTTTTTTAATCATTTTAGTTTAATTTAGCTCGTTAAAAATAAGTGAATCAGGCCCTCACTAAATTTCTTTTTTCTCCAATAAAATTTCAATAATAATGGATTAAAATAAAAAATAAAAAAATGAGACCCTATATATAACCTTATCAACACAATATTCATTCCTCTTATCCTATTTTTTCTTGCTCCCTCTTTCATTTCCTCTCCTCAATTTCTCTTTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGAACTGGGAAAAATTACTGAGTTTTTTTTTGTTTTTGTAAGAGCATTCAGCTATTAGATAGTTGTACCCAATTT</genome_strand>
        <mrna_strand>CTCAATTCCTCTTTAGCTCTGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACGCATCAATTTCCTTCCCTACCAAAACCCTAGAACTCCCCATTGGTTCGCCCAAACTCCACCACCGCCGAGCCACTTTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTACAGCTTGGAGATGAAATCTCCACTCTAACTCTCGCTGATGCGCAGAAACTCGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCGGTCGTCGCCGCTCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACTATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCTTTGAAAGAAGCTAAGGAATTGATCGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTAGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAATGAGTTTGTGGTAAATGTTCATTCTTA----TTTGGTTTTGATT-ATCTGGG-CAAATTACTGTAAGCTTCTGTGTTTTTGCAAGAGAATTCAGTTGTCAGATAGTTGTACCCAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727873" ref_strand="+" ref_description="SGN-E727873 [LA16AA09]">
      <seq>ctttcatttcctctcctcaatttctcttttgctctgctacaatggcttccacattatccactattgccctttgttcaccttctcacatttccccctccacacacgcttcaatttctttccccaccaaaaccctacaactccccattcgcacttccaaactccaccaccgccgagccacttttgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggggatgaaatctccactttaaccctagctgacgcccagaaactggttgagtaccttcaggataagcttggtgtttcagccgcatccttcgctcctgctgccgttgtcgctgcccctggtggcgcagccgcagatgctccagctgtggttgaagagaagacggaatttgacgtagtcatcgatgaagtgccgagtaatgctagaattgctaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacagctcgaagaagctggtgctaaagtctctattgcttaaatcaatttgtggtaaatgttcattcttattccttttttttttttttaaactggaaaaaattactgagtttttttttgtttttgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="87965" stop="86679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87665" g_stop="86978" g_length="688"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="689" r_length="689" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E727873" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87665" e_stop="86978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCATTTCCTCTCCTCAATTTCTCTTTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCC-TTTTTTTTTTTTTGAACTGGGAAAAATTACTGAGTTTTTTTTTGTTTTTGTAAG</genome_strand>
        <mrna_strand>CTTTCATTTCCTCTCCTCAATTTCTCTTTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTTAAACTGGAAAAAATTACTGAGTTTTTTTTTGTTTTTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E290464" ref_strand="+" ref_description="SGN-E290464 [cLES-20-J22]">
      <seq>tttgctctgctacaatggcttccacattatccactattgccctttgttcaccttctcacatttccccctccacacacgcttcaatttctttccccaccaaaaccctacaactccccattcgcacttccaaactccaccaccgccgagccacttttgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggggatgaaatctccactttaaccctagctgacgcccagaaactggttgagtaccttcaggataagcttggtgtttcagccgcatccttcgctcctgctgccgttgtcgctgcccctggtggcgcagccgcagatgctccagctgtggttgaagagaagacggaatttgacgtagtcatcgatgaagtgccgagtaatgctagaattgctaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacagctcgaagaagctggtgctaaagtctctattgcttaaatcaatttgtggtaaatgttcattcttattcctttttttttttttttgaactgggaaaaattactgagtttttttttgttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="87938" stop="86683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87638" g_stop="86983" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E290464" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290464" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87638" e_stop="86983"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCC--TTTTTTTTTTTTTGAACTGGGAAAAATTACTGAGTTTTTTTTTGTTTTT</genome_strand>
        <mrna_strand>TTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTTTGAACTGGGAAAAATTACTGAGTTTTTTTTTGTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E289331" ref_strand="+" ref_description="SGN-E289331 [cLES-18-F4]">
      <seq>gcacttccaaactgcaccaccgccgagccacttttgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggggatgaaatctccactttaaccctagctgacgcccagaaactggttgagtaccttcaggataagcttggtgtttcagccgcatccttcgctcctgctgccgttgtcgctgcccctggtggcgcagccgcagatgctccagctgtggttgaagagaagacggaatttgacgtagtcatcgatgaagtgccgagtaatgctagaattgctaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacagctcgaagaagctggtgctaaagtctctattgcttaaatcaatttggggtgaatgttcattcttattccttttttttttttttttgaactgggaaaaattactgagttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="87818" stop="86719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87518" g_stop="86989" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E289331" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87518" e_stop="86989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCC---TTTTTTTTTTTTTGAACTGGGAAAAATTACTGAGTTTTTTTTT</genome_strand>
        <mrna_strand>GCACTTCCAAACTGCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGGGGTGAATGTTCATTCTTATTCCTTTTTTTTTTTTTTTTGAACTGGGAAAAATTACTGAGTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E390621" ref_strand="+" ref_description="SGN-E390621 [TUS-47-G10]">
      <seq>atttcctctcctcaatttctcttttgctctgctacaatggcttccacattatccactattgccctttgttcaccttctcacatttccccctccacacacgcttcaatttctttccccaccaaaaccctacaactccccattcgcacttccaaactccaccaccgccgagccacttttgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggggatgaaatctccactttaaccctagctgacgcccagaaactggttgagtaccttcaggataagcttggtgtttcagccgcatccttcgctcctgctgccgttgtcgctgcccctggtggcgcagccgcagatgctccagctgtggttgaagagaagacggaatttgacgtagtcatcgatgaagtgccgagtaatgctagaattgctaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacagctcgaagaagctggtgctaaagtctctattgcttaaatcaatttgtggaaaatgttcattcttattcctttttttttttttgaactgggaaaaattactgagtttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="87960" stop="86690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87660" g_stop="86990" g_length="671"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="671" r_length="671" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E390621" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87660" e_stop="86990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCCTCTCCTCAATTTCTCTTTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGAACTGGGAAAAATTACTGAGTTTTTTTT</genome_strand>
        <mrna_strand>ATTTCCTCTCCTCAATTTCTCTTTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGAAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGAACTGGGAAAAATTACTGAGTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347246" ref_strand="+" ref_description="SGN-E347246 [cTOF-25-N5]">
      <seq>tcaatttctcttttgctctgctacaatggcttccacattatccactattgccctttgttcaccttctcacatttccccctccacacacgcttcaatttctttccccaccaaaaccctacaactccccattcgcacttccaaactccaccaccgccgagccacttttgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggggatgaaatctccactttaaccctagctgacgcccagaaactggttgagtaccttcaggataagcttggtgtttcagccgcatccttcgctcctgctgccgttgtcgctgcccctggtggcgcagccgcagatgctccagctgtggttgaagagaagacggaatttgacgtagtcatcgatgaagtgccgagtaatgctagaattgctaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacagctcgaagaagctggtgctaaagtctctattgcttaaatcaatttgtggtaaatgttcattctaattcccttttttttttttgaactgggaaaaatactgagttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="87949" stop="86691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87649" g_stop="86991" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E347246" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87649" e_stop="86991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTTCTCTTTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGAACTGGGAAAAATTACTGAGTTTTTTT</genome_strand>
        <mrna_strand>TCAATTTCTCTTTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTAATTCCCTTTTTTTTTTTTGAACTGGGAAAAA-TACTGAGTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E266872" ref_strand="+" ref_description="SGN-E266872 [cLEI-7-P16]">
      <seq>tcatttcctctcctcaatttctcttttgctctgctacaatggcttccacattatccactattgccctttgttcaccttctcacatttccccctccacacacgcttcaatttctttccccaccaaaaccctacaactccccattcgcacttccaaactccaccaccgccgagccacttttgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggggatgaaatctccactttaaccctagctgacgcccagaaactggttgagtaccttcaggataagcttggtgtttcagccgcatccttcgctcctgctgccgttgtcgctgcccctggtggcgcagccgcagatgctccagctgtggttgaagagaagacggaatttgacgtagtcatcgatgaagtgccgagtaatgctagaattgctaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="87962" stop="86831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87662" g_stop="87131" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="532" r_length="532" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E266872" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266872" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87662" e_stop="87131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTCCTCTCCTCAATTTCTCTTTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTC</genome_strand>
        <mrna_strand>TCATTTCCTCTCCTCAATTTCTCTTTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E289045" ref_strand="+" ref_description="SGN-E289045 [cLES-17-P16]">
      <seq>tcctctcctcaatttctcttttgctctgctacaatggcttccacattatccactattgccctttgttcaccttctcacatttccccctccacacacgcttcaatttctttccccaccaaaaccctacaactccccattcgcacttccaaactccaccaccgccgagccacttttgtccgccctctcgccgccgtcgaagcaccggaganagtagtccagctcggggatgaaatctccactttaaccctagctgacgcccagaaactggttgagtaccttcaggataagcttggtgtttcagccgcatccttcgctcctgctgccgttgtcgctgcccctggtggcgcagccgcagatgctccagctgtggttgaagagaagacggaatttgacgtagtcatcgatgaagtgccgagtaatgctagaattgctaccattaaggctgttagggctttaacaaatttggcattgaaagaggctaaggaattgattgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="87957" stop="86863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87657" g_stop="87163" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E289045" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87657" e_stop="87163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCTCCTCAATTTCTCTTTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAA</genome_strand>
        <mrna_strand>TCCTCTCCTCAATTTCTCTTTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGANAGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAATTTGGCATTGAAAGAGGCTAAGGAATTGATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E266345" ref_strand="+" ref_description="SGN-E266345 [cLEI-3-G7]">
      <seq>tcatttcctctcctcaatttctcttttgctctgctacaatggcttccacattatccactattgccctttgttcaccttctcacatttccccctccacacacgcttcaatttctttccccaccaaaaccctacaactccccattcgcacttgcaaactccaccaccgccgagccacttttgtccgccctctcgccgccgtcaaagcaccggagaaggtagtccagctcggggatgaaatctccactttaaccctagctgacgcccagaaactggttgagtaccttcaggataagcttggtgtttcagccgcatccttcgctcctgctgccgttgtcgctgcccctggtggcgcagccgcagatgctccagctgtggttgaagagaagacggaatttgacgtagtcatcgatgaagtgccgagtaatgctagaattgctaccattaacgctgttagggctttaacaagtttggcattgaaagacgctaaggaattgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="87962" stop="86866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87662" g_stop="87166" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="497" r_length="497" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E266345" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87662" e_stop="87166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTCCTCTCCTCAATTTCTCTTTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATT</genome_strand>
        <mrna_strand>TCATTTCCTCTCCTCAATTTCTCTTTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTGCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCAAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAACGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGACGCTAAGGAATTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E283645" ref_strand="+" ref_description="SGN-E283645 [cLES-1-D5]">
      <seq>tttcctctcctcaatttctcttttgctctgctacaatggcttccacattatccactattgccctttgttcaccttctcacatttccccctccacacacgcttcaatttctttccccaccaaaaccctacaactccccattcgcacttccaaactccaccaccgccgagccacttttgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggggatgaaatctccactttaaccctagctgacgcccagaaactggttgagtaccttcaggataagcttggtgtttcagccgcatccttcgctcctgctgccgttgtcgctgcccctggtggcgcagccgcagatgctccagctgtggttgaagagaagacggaatttgacgtagtcatcgatgaagtgccgagtaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="87959" stop="86936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87659" g_stop="87236" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E283645" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87659" e_stop="87236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCTCTCCTCAATTTCTCTTTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGC</genome_strand>
        <mrna_strand>TTTCCTCTCCTCAATTTCTCTTTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E280408" ref_strand="+" ref_description="SGN-E280408 [cLER-1-N15]">
      <seq>tcattttctctcctcaatttctcttttgctctgctacaatggcttccacattatccactattgccctttgttcaccttctcacatttccccctccacacacgcttcaatttctttccccaccaaaaccctacaactccccattcgcacttccaaactccaccaccgccgagccacttttgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggggatgaaatctccactttaaccctagctgacgcccagaaactggttgagtaccttcaggataagcttggtgtttcagccgcatccttcgctcctgctgccgntgtcgctgcccctggtggcgcagccgcagatgctccagctgtggttgaagagaagacggaatttgacgtagtcatcgatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="87962" stop="86950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87662" g_stop="87250" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E280408" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87662" e_stop="87250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTCCTCTCCTCAATTTCTCTTTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAA</genome_strand>
        <mrna_strand>TCATTTTCTCTCCTCAATTTCTCTTTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGNTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278811" ref_strand="+" ref_description="SGN-E278811 [cLER-2-J7]">
      <seq>tttgctctgctacaatggcttccacattatccactattgccctttgttcaccttctcacatttccccctccacacacgcttcaatttctttccccaccaaaaccctacaactccccattcgcacttccaaactccaccaccgccgagccacttttgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggggatgaaatctccactttaaccctagctgacgcccagaaactggttgagtaccttcaggataagcttggtgtttcagccgcatccttcgctcctgctgccgttgtcgctgcccctggtggcgcagccgcagatgctccagctgtggttgaagagaagacggaatttgacgtagtcatcgatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="87938" stop="86950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87638" g_stop="87250" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E278811" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87638" e_stop="87250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAA</genome_strand>
        <mrna_strand>TTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E552131" ref_strand="+" ref_description="SGN-E552131 [cTSB-2-O9]">
      <seq>gtcgcttcccctggcgcagccgcagatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctagaattgcgaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacaacttgaagaagctggtgctaaagtttctattgcttaaacaaatttgtggtaaatgttcgttcttagttgtgttttcgcaagagaattcagttgttagatatacttgtactcaattttctcaaatcaagttttttcagtaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="91713" stop="79495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91427" g_stop="91062" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91061" i_stop="88061" i_length="3001">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88060" g_stop="88032" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="392" r_length="29" r_score="0.586"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E552131" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91427" e_stop="91062"/>
          <exon e_start="88060" e_stop="88032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTATGATTTGTGATTGTTCCAGTTTTAATTGTTAGTGTGTTTGTTGTTTGATGACTTGGTCTCACAATCAGGCAGGCGAGCAGACATAATCTTAGCTTGAGCCTACTGTCGCACACCTCTGTTGAGTGTTAATAATGTGAGTGATATAACTAATTGGGATCACTCTATGCTTGAATTATGATCCAAAAATTATTGGTTCTTATGTTGATCAATCTCAACAATATGCAACTCCACTGTATAATATGAGTTAGGTTATCTCATTTTGGTCATGAAAAATAAGCTGATAACTGAAATGCAATCAACTGTTGAACCATGTGACCTCTCTGTACTCTGCTATAGTGCAAAGATCACAGGGCTTAAACCAGCAATTGAGGGCTATGGATTTCGCATTGACATTGAGTAGTTAAGCACAGCCATCAGAGGCTGTTGTTGTCAGATTCCAGTCTTGTACATGCTTGGCTGCATCAATTGATGCTTTTGCATACTATATTGTTGAAGAAGCATTTCCCCTACAACATTTTACACATCAATTCTAGTTGTGTCGTATTATTTTAGCTTTTACTTAATTCGGAATACTTAGCCTGAAATGGCTTACAAATATGTGTTGTCTTTTAGGGGATATATCAGTATCCCCAGAATGCTCTCTCATGTCCATAATGCTTATGACACTGGTAGCTGTAATAGGAGAAAAAGGCAGCTTCAAAATGTCTGTGAAGAAAGTAGTGAATTCATGCATTTTTTGTTTCAACGTCAGGCAGGCATTTTGAATGCTAAATCTCATACTTGAAAAGGAAAATTCTAGTTTGAAGTGAATAGCACTTAAACCTGTGACCAATTGACCATTTCAATTTGGAACTTGGTATAAATACAATACTATCTGCAAGATAGTTCTTTTTCTCTAGTAAAGATGATAGTTTAAGGATGGGAATATATCTCATTTGCTCCAAGAAGATTTTGCAGCCCCCTTTCATTAGGAAATCATTAAGGTTTTACGATAAATATAAATAGTACTCCCTCCGTCCGGTATTATTTGTCATGATTTTTATTTTTAGAGTCAAACCACAAAAATTTTGACTAACAATTTAAGATGTATTTTGCGATCATATTAATATGCAAAAAATTATAATTTGTAGTATTTTTTAATATAGTTTTAAAATATCTAATTTTTTGGTTCAAACTATCGAATTGTGATCTTATTTACCTTTAAAAATTAGTCAAATTAATTTTCGATAAATACAATATGACAAACAATTTCGAATAAATAATTCTGAACGGAGAAAGTAGTCTAGAACTATGAGTACACGAATATCGAAGCAGGGCATTTGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGAGTTCGATTCTCGGAATGCCCCGCTATTTTTTTTTATATTTTGGAACACCACTAAAAATATATATATCTAATTTGGTACTTAGGATCGAAAGAAAAATATATATTTAAATCTTCTTAATTTCATAGATATGTAAATTAGTGAGGTTAACGTTCTTCCAGCATCTCATTACATAAAGATGAGCCCCACCCACCCAATTAGAGGCTCCGAGGAATTAATAAATCAACAGAAAAAGCTCAAAAATATCTTAAATTATTTTTGAAATAGTTTATACTTACTTTTAAATTATATTTCGATTTAAAATTATCCTTCCCATCATACTATTGATCAAAAATATCCTTCTTGTTAACTGAAAATATTAAATGTCACATGTCATGCCACGTACATACCACAATTTCATTCATTCCACATAGACTAATATTCTTAATCCCACTTTTTTCCCTCATTTCTCAATTTCCATTTGAAACCAATTTCACGCCCCCATTTCCCCTCATTTCTCCATTTCCCTTAGAAACGATTTCATTCATTTCCCAAAAATTTCACTCATTTCTCCATTTCCCTTAGATGGATTAAAACTTATTTGAAATCATTTATGTTGGAGAGTCCTAACTAGAAAGTAAACTCTGTAATGGAAAAAGAAGTTAGTTTTCAGTATTTTCACACTGTAAATGGATAGATGATAACAGAATTTCAACTGAAAATAGAAGTAAAACCTAGAGATTTAATGTCTTACTTGACTCTAGGAAACTTGATTATTACTTCTCAGGAAAATTTTAAAAATATGAGAAATTTTGTGAGGAATTTTCATGAATTGCACTCTACATAGTTAGTTATAACTATTCTAGACAGTTACATCAATGTAAATGAATTATCCAGTAACATTATTCACTATAGTTTGAAAAACAAACACTTGCCATTACTCAATCCACTAAGCCATGAAATTGAACATGTAAACAGAAATAAGCTAAAACTAAGACAATGTTACTGCAATGAGTGGAAAATTAGGGAGATGGATTAAATCATTTATAAGGGAATTAGAGAAATGAGGGGGAAAGGGGTGGGTGAAATGGCGGCTTCAAATGGAAATTGAGTAATGAGGGGAAAAATTTGGGATCAGGAGTATTCGTCTATATGGAAATGAATGAAATTATTGTGCTTACGTGCATGTCGGTATTTATCAGTTTCAGTTAATAAGAAGGGTATTTTTGATTCAATAGTATAATCAAAAGGATAGTTTTGAATCGAAATATAGTTTAAGAATATATATGAGCTATTTCAAATAGTTTAAAGGTATTGTTAAGCCTTTTTCGTAAATCAAATAATATTCAACGGAGAGCCTTAGTGATTACTTTCTCCGTTTAAAAAAGAATGTCCATATTTCTTTTTTAGTTTGTTTAAAAAAGAATTACCCCTTTCCTTCTTTGACAATAATTTAACTTTAACTTTTCACATGTCATGTTTAAGAACACAAGATTAAAGGACACTTTGATACATTTACATAACTTTAATTTAGACACAAAATTAATAAAATCTTTTTTTTTTCTTAAATTCTATTCCATATCAAACTATATCATATTTTTAAAATGGAGGATGTAATATATATACTATTAATTTTTTTTAAAACAGGTAAATAAGAGAGAGAAAATCTCTCAAAT</genome_strand>
        <mrna_strand>GTCGCTTCCCC---TGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E552199" ref_strand="+" ref_description="SGN-E552199 [cTSB-3-C23]">
      <seq>gtcgcttcccctggcgcagccgcagatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctagaattgcgaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacaacttgaagaagctggtgctaaagtttctattgcttaaacaaatttgtggtaaatgttcgttcttagttgtgttttcgcaagagaattcagttgttagatatacttgtactcaattttctcaaatcaagttttttcagtaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="91713" stop="79495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91427" g_stop="91062" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91061" i_stop="88061" i_length="3001">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88060" g_stop="88032" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="392" r_length="29" r_score="0.586"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E552199" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91427" e_stop="91062"/>
          <exon e_start="88060" e_stop="88032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTATGATTTGTGATTGTTCCAGTTTTAATTGTTAGTGTGTTTGTTGTTTGATGACTTGGTCTCACAATCAGGCAGGCGAGCAGACATAATCTTAGCTTGAGCCTACTGTCGCACACCTCTGTTGAGTGTTAATAATGTGAGTGATATAACTAATTGGGATCACTCTATGCTTGAATTATGATCCAAAAATTATTGGTTCTTATGTTGATCAATCTCAACAATATGCAACTCCACTGTATAATATGAGTTAGGTTATCTCATTTTGGTCATGAAAAATAAGCTGATAACTGAAATGCAATCAACTGTTGAACCATGTGACCTCTCTGTACTCTGCTATAGTGCAAAGATCACAGGGCTTAAACCAGCAATTGAGGGCTATGGATTTCGCATTGACATTGAGTAGTTAAGCACAGCCATCAGAGGCTGTTGTTGTCAGATTCCAGTCTTGTACATGCTTGGCTGCATCAATTGATGCTTTTGCATACTATATTGTTGAAGAAGCATTTCCCCTACAACATTTTACACATCAATTCTAGTTGTGTCGTATTATTTTAGCTTTTACTTAATTCGGAATACTTAGCCTGAAATGGCTTACAAATATGTGTTGTCTTTTAGGGGATATATCAGTATCCCCAGAATGCTCTCTCATGTCCATAATGCTTATGACACTGGTAGCTGTAATAGGAGAAAAAGGCAGCTTCAAAATGTCTGTGAAGAAAGTAGTGAATTCATGCATTTTTTGTTTCAACGTCAGGCAGGCATTTTGAATGCTAAATCTCATACTTGAAAAGGAAAATTCTAGTTTGAAGTGAATAGCACTTAAACCTGTGACCAATTGACCATTTCAATTTGGAACTTGGTATAAATACAATACTATCTGCAAGATAGTTCTTTTTCTCTAGTAAAGATGATAGTTTAAGGATGGGAATATATCTCATTTGCTCCAAGAAGATTTTGCAGCCCCCTTTCATTAGGAAATCATTAAGGTTTTACGATAAATATAAATAGTACTCCCTCCGTCCGGTATTATTTGTCATGATTTTTATTTTTAGAGTCAAACCACAAAAATTTTGACTAACAATTTAAGATGTATTTTGCGATCATATTAATATGCAAAAAATTATAATTTGTAGTATTTTTTAATATAGTTTTAAAATATCTAATTTTTTGGTTCAAACTATCGAATTGTGATCTTATTTACCTTTAAAAATTAGTCAAATTAATTTTCGATAAATACAATATGACAAACAATTTCGAATAAATAATTCTGAACGGAGAAAGTAGTCTAGAACTATGAGTACACGAATATCGAAGCAGGGCATTTGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGAGTTCGATTCTCGGAATGCCCCGCTATTTTTTTTTATATTTTGGAACACCACTAAAAATATATATATCTAATTTGGTACTTAGGATCGAAAGAAAAATATATATTTAAATCTTCTTAATTTCATAGATATGTAAATTAGTGAGGTTAACGTTCTTCCAGCATCTCATTACATAAAGATGAGCCCCACCCACCCAATTAGAGGCTCCGAGGAATTAATAAATCAACAGAAAAAGCTCAAAAATATCTTAAATTATTTTTGAAATAGTTTATACTTACTTTTAAATTATATTTCGATTTAAAATTATCCTTCCCATCATACTATTGATCAAAAATATCCTTCTTGTTAACTGAAAATATTAAATGTCACATGTCATGCCACGTACATACCACAATTTCATTCATTCCACATAGACTAATATTCTTAATCCCACTTTTTTCCCTCATTTCTCAATTTCCATTTGAAACCAATTTCACGCCCCCATTTCCCCTCATTTCTCCATTTCCCTTAGAAACGATTTCATTCATTTCCCAAAAATTTCACTCATTTCTCCATTTCCCTTAGATGGATTAAAACTTATTTGAAATCATTTATGTTGGAGAGTCCTAACTAGAAAGTAAACTCTGTAATGGAAAAAGAAGTTAGTTTTCAGTATTTTCACACTGTAAATGGATAGATGATAACAGAATTTCAACTGAAAATAGAAGTAAAACCTAGAGATTTAATGTCTTACTTGACTCTAGGAAACTTGATTATTACTTCTCAGGAAAATTTTAAAAATATGAGAAATTTTGTGAGGAATTTTCATGAATTGCACTCTACATAGTTAGTTATAACTATTCTAGACAGTTACATCAATGTAAATGAATTATCCAGTAACATTATTCACTATAGTTTGAAAAACAAACACTTGCCATTACTCAATCCACTAAGCCATGAAATTGAACATGTAAACAGAAATAAGCTAAAACTAAGACAATGTTACTGCAATGAGTGGAAAATTAGGGAGATGGATTAAATCATTTATAAGGGAATTAGAGAAATGAGGGGGAAAGGGGTGGGTGAAATGGCGGCTTCAAATGGAAATTGAGTAATGAGGGGAAAAATTTGGGATCAGGAGTATTCGTCTATATGGAAATGAATGAAATTATTGTGCTTACGTGCATGTCGGTATTTATCAGTTTCAGTTAATAAGAAGGGTATTTTTGATTCAATAGTATAATCAAAAGGATAGTTTTGAATCGAAATATAGTTTAAGAATATATATGAGCTATTTCAAATAGTTTAAAGGTATTGTTAAGCCTTTTTCGTAAATCAAATAATATTCAACGGAGAGCCTTAGTGATTACTTTCTCCGTTTAAAAAAGAATGTCCATATTTCTTTTTTAGTTTGTTTAAAAAAGAATTACCCCTTTCCTTCTTTGACAATAATTTAACTTTAACTTTTCACATGTCATGTTTAAGAACACAAGATTAAAGGACACTTTGATACATTTACATAACTTTAATTTAGACACAAAATTAATAAAATCTTTTTTTTTTCTTAAATTCTATTCCATATCAAACTATATCATATTTTTAAAATGGAGGATGTAATATATATACTATTAATTTTTTTTAAAACAGGTAAATAAGAGAGAGAAAATCTCTCAAAT</genome_strand>
        <mrna_strand>GTCGCTTCCCC---TGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E723504" ref_strand="+" ref_description="SGN-E723504 [FC20CH04]">
      <seq>aatcggccgaattgatcctaatttttgtacctttaactttcactctcccaatttctctttagctcagctaccatggcttccacattatccacaattacccttcgttctccctctcctatttctccagcaaccgcaagctccacgcacgcttcaatttccttccccaccaaaaccctagaacttcccattcgcactcccaaactgtaccaccgccgggcaactctcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggagatgaaatctccaacttaaccctcgctgatgcccagaaactcgtcgagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgcttcccctggtggcgcagccgcaaatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctagaattgcgaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacaacttgaagaagctggtgctaaagtttctattgcttaaacaaatttgtggtaaatgttcgttcttagttgtgttttcgcaagagaattcagttgttagatatacttgtactcaattttctcaaatcaagttttttcagtcgtctttgcttatgaaaaanannannaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="92069" stop="79488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91804" g_stop="91049" g_length="756"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="757" r_length="757" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91048" i_stop="90783" i_length="266">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90782" g_stop="90757" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="758" r_stop="783" r_length="26" r_score="0.577"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90756" i_stop="88921" i_length="1836">
            <donor d_prob="0.599" d_score="0.00"/>
            <acceptor a_prob="0.630" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88920" g_stop="88905" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="784" r_stop="799" r_length="16" r_score="0.625"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E723504" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91804" e_stop="91049"/>
          <exon e_start="90782" e_stop="90757"/>
          <exon e_start="88920" e_stop="88905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAATCCCCTT-ATCCTAATTTTTGTATCTCCCTCTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTATGATTTGTGATTGTTCCAGTTTTAATTGTTAGTGTGTTTGTTGTTTGATGACTTGGTCTCACAATCAGGCAGGCGAGCAGACATAATCTTAGCTTGAGCCTACTGTCGCACACCTCTGTTGAGTGTTAATAATGTGAGTGATATAACTAATTGGGATCACTCTATGCTTGAATTATGATCCAAAAATTATTGGTTCTTATGTTGATCAATCTCAACAATATGCAACTCCACTGTATAATATGAGTTAGGTTATCTCATTTTGGTCATGAAAAATAAGCTGATAACTGAAATGCAATCAACTGTTGAACCATGTGACCTCTCTGTACTCTGCTATAGTGCAAAGATCACAGGGCTTAAACCAGCAATTGAGGGCTATGGATTTCGCATTGACATTGAGTAGTTAAGCACAGCCATCAGAGGCTGTTGTTGTCAGATTCCAGTCTTGTACATGCTTGGCTGCATCAATTGATGCTTTTGCATACTATATTGTTGAAGAAGCATTTCCCCTACAACATTTTACACATCAATTCTAGTTGTGTCGTATTATTTTAGCTTTTACTTAATTCGGAATACTTAGCCTGAAATGGCTTACAAATATGTGTTGTCTTTTAGGGGATATATCAGTATCCCCAGAATGCTCTCTCATGTCCATAATGCTTATGACACTGGTAGCTGTAATAGGAGAAAAAGGCAGCTTCAAAATGTCTGTGAAGAAAGTAGTGAATTCATGCATTTTTTGTTTCAACGTCAGGCAGGCATTTTGAATGCTAAATCTCATACTTGAAAAGGAAAATTCTAGTTTGAAGTGAATAGCACTTAAACCTGTGACCAATTGACCATTTCAATTTGGAACTTGGTATAAATACAATACTATCTGCAAGATAGTTCTTTTTCTCTAGTAAAGATGATAGTTTAAGGATGGGAATATATCTCATTTGCTCCAAGAAGATTTTGCAGCCCCCTTTCATTAGGAAATCATTAAGGTTTTACGATAAATATAAATAGTACTCCCTCCGTCCGGTATTATTTGTCATGATTTTTATTTTTAGAGTCAAACCACAAAAATTTTGACTAACAATTTAAGATGTATTTTGCGATCATATTAATATGCAAAAAATTATAATTTGTAGTATTTTTTAATATAGTTTTAAAATATCTAATTTTTTGGTTCAAACTATCGAATTGTGATCTTATTTACCTTTAAAAATTAGTCAAATTAATTTTCGATAAATACAATATGACAAACAATTTCGAATAAATAATTCTGAACGGAGAAAGTAGTCTAGAACTATGAGTACACGAATATCGAAGCAGGGCATTTGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGAGTTCGATTCTCGGAATGCCCCGCTATTTTTTTTTATATTTTGGAACACCACTAAAAATATATATATCTAATTTGGTACTTAGGATCGAAAGAAAAATATATATTTAAATCTTCTTAATTTCATAGATATGTAAATTAGTGAGGTTAACGTTCTTCCAGCATCTCATTACATAAAGATGAGCCCCACCCACCCAATTAGAGGCTCCGAGGAATTAATAAATCAACAGAAAAAGCTCAAAAATATCTTAAATTATTTTTGAAATAGTTTATACTTACTTTTAAATTATATTTCGATTTAAAATTATCCTTCCCATCATACTATTGATCAAAAATATCCTTCTTGTTAACTGAAAATATTAAATGTCACATGTCATGCCACGTACATACCACAATTTCATTCATTCCACATAGACTAATATTCTTAATCCCACTTTTTTCCCTCATTTCTCAATTTCCATTTGAAACCAATTTCACGCCCCCATTTCCCCTCATTTCTCCATTTCCCTTAGAAACGATTTCATTCATTTCCCAAAAATTTCACTCATTTCTCCATTTCCCTTAGATGGATTAAAACTTATTTGAAATCATTTATGTTGGAGAGTCCTAACTAGAAAGTAAACTCTGTAATGGAAAAAGAAGTTAGTTTTCAGTATTTTCACACTGTAAATGGATAGATGATAACAGAATTTCAACTGAAAATAGAAGTAAAACCTAGAGATTTAATGTCTTACTTGACTCTAGGAAACTTGATTATTACTTCTCAGGAAAATTTTAAAAATA</genome_strand>
        <mrna_strand>AATCGGCCGAATTGATCCTAATTTTTGTACCTTTAACTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACCATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAAATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTT..........................................................................................................................................................................................................................................................................ATGAAAAANANNANNAAAAAAAAAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E291921" ref_strand="-" ref_description="SGN-E291921 [cLET-7-G11]">
      <seq>aggtagtccagctcggagatgaaatctccaacttaaccctcgctgatgcccagaaactcgtcgagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgcttcccctggtggcgcagccgcagatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctagaattgcgaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacaacttgaagaagctggtgctaaagtttgccctttaatntttgcgttaaacaaatttgtggtaaatgttcgttcttagttgtgttttcgcaagagaattcagttgttagatatacttgtactcaattttctcaaatcaagttttttccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactcagactagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="91846" stop="79486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91546" g_stop="91063" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91062" i_stop="89476" i_length="1587">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.62"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89475" g_stop="89429" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="541" r_length="47" r_score="0.617"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E291921" ref_strand="-">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291921" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="91546" e_stop="91063"/>
          <exon e_start="89475" e_stop="89429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTT---C--T-A---TTGC-TTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTATGATTTGTGATTGTTCCAGTTTTAATTGTTAGTGTGTTTGTTGTTTGATGACTTGGTCTCACAATCAGGCAGGCGAGCAGACATAATCTTAGCTTGAGCCTACTGTCGCACACCTCTGTTGAGTGTTAATAATGTGAGTGATATAACTAATTGGGATCACTCTATGCTTGAATTATGATCCAAAAATTATTGGTTCTTATGTTGATCAATCTCAACAATATGCAACTCCACTGTATAATATGAGTTAGGTTATCTCATTTTGGTCATGAAAAATAAGCTGATAACTGAAATGCAATCAACTGTTGAACCATGTGACCTCTCTGTACTCTGCTATAGTGCAAAGATCACAGGGCTTAAACCAGCAATTGAGGGCTATGGATTTCGCATTGACATTGAGTAGTTAAGCACAGCCATCAGAGGCTGTTGTTGTCAGATTCCAGTCTTGTACATGCTTGGCTGCATCAATTGATGCTTTTGCATACTATATTGTTGAAGAAGCATTTCCCCTACAACATTTTACACATCAATTCTAGTTGTGTCGTATTATTTTAGCTTTTACTTAATTCGGAATACTTAGCCTGAAATGGCTTACAAATATGTGTTGTCTTTTAGGGGATATATCAGTATCCCCAGAATGCTCTCTCATGTCCATAATGCTTATGACACTGGTAGCTGTAATAGGAGAAAAAGGCAGCTTCAAAATGTCTGTGAAGAAAGTAGTGAATTCATGCATTTTTTGTTTCAACGTCAGGCAGGCATTTTGAATGCTAAATCTCATACTTGAAAAGGAAAATTCTAGTTTGAAGTGAATAGCACTTAAACCTGTGACCAATTGACCATTTCAATTTGGAACTTGGTATAAATACAATACTATCTGCAAGATAGTTCTTTTTCTCTAGTAAAGATGATAGTTTAAGGATGGGAATATATCTCATTTGCTCCAAGAAGATTTTGCAGCCCCCTTTCATTAGGAAATCATTAAGGTTTTACGATAAATATAAATAGTACTCCCTCCGTCCGGTATTATTTGTCATGATTTTTATTTTTAGAGTCAAACCACAAAAATTTTGACTAACAATTTAAGATGTATTTTGCGATCATATTAATATGCAAAAAATTATAATTTGTAGTATTTTTTAATATAGTTTTAAAATATCTAATTTTTTGGTTCAAACTATCGAATTGTGATCTTATTTACCTTTAAAAATTAGTCAAATTAATTTTCGATAAATACAATATGACAAACAATTTCGAATAAATAATTCTGAACGGAGAAAGTAGTCTAGAACTATGAGTACACGAATATCGAAGCAGGGCATTTGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGAGTTCGATTCTCGGAATGCCCCGCTATTTTTTTTTATATTTTGGAACACCACTAAAAATATATATATCTAATTTGGTACTTAGGATCGAAAGAAAAATATATATTTAAATCTTCTTAATTTCATAGATATGTAAATTAGTGAGGTTAACGTTCTTCCAGCATCTCATTACATAAAGATGAGCCCCACCCACCCAATTAGAGGCTCCGAGGAATTAATAAATCAACAGAAAAAGCTCAAAAATATCTTAAATTATTT</genome_strand>
        <mrna_strand>AGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTGCCCTTTAATNTTTGCGTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCAGACTAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E722772" ref_strand="-" ref_description="SGN-E722772 [FC18BB05]">
      <seq>ttttttttttttttttttttttttttttttntttttttttttttntcataagcaaagacgactgaaaaaacttgatttgagaaaattgagtacaagtatatctaacaactgaattctcttgcgaaaacacaactaagaacgaacatttaccacaaatttgtttaagcaatagaaactttagcaccagcttcttcaagttgtttcttagcatcttcagcctcatccttggaaacaccctccttaaatttcttaggcaatccttcaatcaattccttagcctctttcaatgccaaacttgttaaagccctaacagccttaatggtcgcaattctagcattactcggcacttcatcgatgactacatcaaattccgtcttctcctcaaccacagctggagcatctgcggctgcgccaccaggggaagcgacgacggcagcgggagcgaaggatgcggctgaaactccaagcttatcctgaaggtactcgacgagtttctgggcatcagcgagggttaagttggagatttcatctccgagctggactaccttctccggtgcttcgacggcggcgagagggcggacgagagttgcccggcggtggtacagtttgggagtgcgaatgggaagttctagggttttggtggggaaggaaattgaagcgtgcgtggagcttgcggttgctggagaaataggagagggagaacgaagggtaattgtggataatgtggaagccattgtagctgagctaaagagaaattgggagcaattcggccgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="+" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="79488" stop="92064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89786" g_stop="89819" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.588"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89820" i_stop="90225" i_length="406">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.737" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90226" g_stop="90233" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="42" r_length="8" r_score="0.500"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90234" i_stop="91041" i_length="808">
            <donor d_prob="0.784" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91042" g_stop="91762" g_length="721"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="763" r_length="721" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="+" ref_id="SGN-E722772" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722772" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="89786" e_stop="89819"/>
          <exon e_start="90226" e_stop="90233"/>
          <exon e_start="91042" e_stop="91762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTATTCGAAATTGTTTGTCATATTGTATTTATCGAAAATTAATTTGACTAATTTTTAAAGGTAAATAAGATCACAATTCGATAGTTTGAACCAAAAAATTAGATATTTTAAAACTATATTAAAAAATACTACAAATTATAATTTTTTGCATATTAATATGATCGCAAAATACATCTTAAATTGTTAGTCAAAATTTTTGTGGTTTGACTCTAAAAATAAAAATCATGACAAATAATACCGGACGGAGGGAGTACTATTTATATTTATCGTAAAACCTTAATGATTTCCTAATGAAAGGGGGCTGCAAAATCTTCTTGGAGCAAATGAGATATATTCCCATCCTTAAACTATCATCTTTACTAGAGAAAAAGAACTATCTTGCAGATAGTATTGTATTTATACCAAGTTCCAAATTGAAATGGTCAATTGGTCACAGGTTTAAGTGCTATTCACTTCAAACTAGAATTTTCCTTTTCAAGTATGAGATTTAGCATTCAAAATGCCTGCCTGACGTTGAAACAAAAAATGCATGAATTCACTACTTTCTTCACAGACATTTTGAAGCTGCCTTTTTCTCCTATTACAGCTACCAGTGTCATAAGCATTATGGACATGAGAGAGCATTCTGGGGATACTGATATATCCCCTAAAAGACAACACATATTTGTAAGCCATTTCAGGCTAAGTATTCCGAATTAAGTAAAAGCTAAAATAATACGACACAACTAGAATTGATGTGTAAAATGTTGTAGGGGAAATGCTTCTTCAACAATATAGTATGCAAAAGCATCAATTGATGCAGCCAAGCATGTACAAGACTGGAATCTGACAACAACAGCCTCTGATGGCTGTGCTTAACTACTCAATGTCAATGCGAAATCCATAGCCCTCAATTGCTGGTTTAAGCCCTGTGATCTTTGCACTATAGCAGAGTACAGAGAGGTCACATGGTTCAACAGTTGATTGCATTTCAGTTATCAGCTTATTTTTCATGACCAAAATGAGATAACCTAACTCATATTATACAGTGGAGTTGCATATTGTTGAGATTGATCAACATAAGAACCAATAATTTTTGGATCATAATTCAAGCATAGAGTGATCCCAATTAGTTATATCACTCACATTATTAACACTCAACAGAGGTGTGCGACAGTAGGCTCAAGCTAAGATTATGTCTGCTCGCCTGCCTGATTGTGAGACCAAGTCATCAAACAACAAACACACTAACAATTAAAACTGGAACAATCACAAATCATAAGCAAAGACGACTGAAAAAACTTGATTTGAGAAAATTGAGTACAAGTATATCTAACAACTGAATTCTCTTGCGAAAACACAACTAAGAACGAACATTTACCACAAATTTGTTTAAGCAATAGAAACTTTAGCACCAGCTTCTTCAAGTTGTTTCTTAGCATCTTCAGCCTCATCCTTGGAAACACCCTCCTTAAATTTCTTAGGCAATCCTTCAATCAATTCCTTAGCCTCTTTCAATGCCAAACTTGTTAAAGCCCTAACAGCCTTAATGGTCGCAATTCTAGCATTACTCGGCACTTCATCGATGACTACATCAAATTCCGTCTTCTCCTCAACCACAGCTGGAGCATCTGCGGCTGCGCCACCAGGGGAAGCGACGACGGCAGCGGGAGCGAAGGATGCGGCTGAAACTCCAAGCTTATCCTGAAGGTACTCGACGAGTTTCTGGGCATCAGCGAGGGTTAAGTTGGAGATTTCATCTCCGAGCTGGACTACCTTCTCCGGTGCTTCGACGGCGGCGAGAGGGCGGACGAGAGTTGCCCGGCGGTGGTACAGTTTGGGAGTGCGAATGGGAAGTTCTAGGGTTTTGGTGGGGAAGGAAATTGAAGCGTGCGTGGAGCTTGCGGTTGCTGGAGAAATAGGAGAGGGAGAACGAAGGGTAATTGTGGATAATGTGGAAGCCATTGTAGCTGAGCTAAAGAGAAATTGGGAGA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTT......................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTNTCATAAGCAAAGACGACTGAAAAAACTTGATTTGAGAAAATTGAGTACAAGTATATCTAACAACTGAATTCTCTTGCGAAAACACAACTAAGAACGAACATTTACCACAAATTTGTTTAAGCAATAGAAACTTTAGCACCAGCTTCTTCAAGTTGTTTCTTAGCATCTTCAGCCTCATCCTTGGAAACACCCTCCTTAAATTTCTTAGGCAATCCTTCAATCAATTCCTTAGCCTCTTTCAATGCCAAACTTGTTAAAGCCCTAACAGCCTTAATGGTCGCAATTCTAGCATTACTCGGCACTTCATCGATGACTACATCAAATTCCGTCTTCTCCTCAACCACAGCTGGAGCATCTGCGGCTGCGCCACCAGGGGAAGCGACGACGGCAGCGGGAGCGAAGGATGCGGCTGAAACTCCAAGCTTATCCTGAAGGTACTCGACGAGTTTCTGGGCATCAGCGAGGGTTAAGTTGGAGATTTCATCTCCGAGCTGGACTACCTTCTCCGGTGCTTCGACGGCGGCGAGAGGGCGGACGAGAGTTGCCCGGCGGTGGTACAGTTTGGGAGTGCGAATGGGAAGTTCTAGGGTTTTGGTGGGGAAGGAAATTGAAGCGTGCGTGGAGCTTGCGGTTGCTGGAGAAATAGGAGAGGGAGAACGAAGGGTAATTGTGGATAATGTGGAAGCCATTGTAGCTGAGCTAAAGAGAAATTGGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E732811" ref_strand="+" ref_description="SGN-E732811 [LB03AH03]">
      <seq>ctttagcgcagctacaatggcttccacattatccacaattacccttcgttctccctctcctatttctccagcaaccgcaagctccacgcacgcttcaatttccttccccaccaaaaccctagaacttcccattcgcactcccaaactgtaccaccgccgggcaactctcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggagatgaaatctccaacttaaccctcgctgatgcccagaaactcgtcgagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgcttcccctggtggcgcagccgcagatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctagaattgcgaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacaacttgaagaagctggtgctaaagtttctattgcttaaacaaatttgtggtaaatgttcgttcttagttgtgttttcgcaagagaattcagttgttagatatacttgtactcaattttctcaaatcaagttttttcaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="92049" stop="79499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91749" g_stop="91062" g_length="688"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="688" r_length="688" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91061" i_stop="90980" i_length="82">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90979" g_stop="90959" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="689" r_stop="709" r_length="21" r_score="0.333"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E732811" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91749" e_stop="91062"/>
          <exon e_start="90979" e_stop="90959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTATGATTTGTGATTGTTCCAGTTTTAATTGTTAGTGTGTTTGTTGTTTGATGACTTGGTCTCACAATCAGGCAGGCGAGCAGACATAATCT</genome_strand>
        <mrna_strand>CTTTAGCGCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCA..................................................................................AAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E715235" ref_strand="+" ref_description="SGN-E715235 [FB13CH05]">
      <seq>ctccctctttcactctcccaatttctctttagctcagctacaatggcttccacattatccacaattacccttcgttctccctctcctatttctccagcaaccgcaagctccacgcacgcttcaatttccttccccaccaaaaccctagaacttcccattcgcactcccaaactgtaccaccgccgggcaactctcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggagatgaaatctccaacttaaccctcgctgatgcccagaaactcgtcgagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgcttcccctggtggcgcagccgcagatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctagaattgcgaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacaacttgaagaagctggtgctaaagtttctattgcttaaacaaatttgtggtaaatgttcgttcttagttgtgttttcgcaagagaattcagttgttagatatacttgtactcaattttctcaaatcaagttttttcagtcgtctttgcttatgatttgtgattgttccagttttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="92075" stop="90723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91775" g_stop="91014" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="762" r_length="762" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E715235" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91775" e_stop="91014"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCTCTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTATGATTTGTGATTGTTCCAGTTTTAATTGTTAGTG</genome_strand>
        <mrna_strand>CTCCCTCTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTATGATTTGTGATTGTTCCAGTTTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E712389" ref_strand="+" ref_description="SGN-E712389 [FB04CH05]">
      <seq>ctgccgtcgtcgcttcccctggtggcgcagccgcagatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctagaattgcgaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacaacttgaagaagctggtgctaaagtttctattgcttaaacaaatttgtggtaaatgttcgttcttagttgtgttttcgcaagagaattcagttgttagatatacttgtactcaattttctcaaatcaagttttttcagtcgtctttgcttaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="91735" stop="79492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91435" g_stop="91023" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E712389" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91435" e_stop="91023"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTATGATTTGTGATTGTTCCAGTTTTAA</genome_strand>
        <mrna_strand>CTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E279614" ref_strand="+" ref_description="SGN-E279614 [cLER-5-C19]">
      <seq>tcgattttttttttttttttttcataagcaaagacgactgaaaaaacttgatttgagaaaattgagtacaagtatatctaacaactgaattctcttgcgaaaacacaactaagaacgaacatttaccacaaatttgtttaagcaatagaaactttagcaccagcttcttcaagttgtttcttagcatcttcagcctcatccttggaaacaccctccttaaatttcttaggcaatccttcaatcaattccttagcctctttcaatgccaaacttgttaaagccctaacagccttaatggtcgcaattctagcattactcggcacttcatcgatgactacatcaaattccgtcttctcctcaaccacagctggagcatctgcggctgcgccaccaggggaagcgacgacggcagcgggagcgaaggatgcggctgaaactccaagcttatcctgaaggtactcgacgagtttctgggcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="+" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="79498" stop="91802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91024" g_stop="91502" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="479" r_length="479" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="+" ref_id="SGN-E279614" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91024" e_stop="91502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAACTGGAACAATCACAAATCATAAGCAAAGACGACTGAAAAAACTTGATTTGAGAAAATTGAGTACAAGTATATCTAACAACTGAATTCTCTTGCGAAAACACAACTAAGAACGAACATTTACCACAAATTTGTTTAAGCAATAGAAACTTTAGCACCAGCTTCTTCAAGTTGTTTCTTAGCATCTTCAGCCTCATCCTTGGAAACACCCTCCTTAAATTTCTTAGGCAATCCTTCAATCAATTCCTTAGCCTCTTTCAATGCCAAACTTGTTAAAGCCCTAACAGCCTTAATGGTCGCAATTCTAGCATTACTCGGCACTTCATCGATGACTACATCAAATTCCGTCTTCTCCTCAACCACAGCTGGAGCATCTGCGGCTGCGCCACCAGGGGAAGCGACGACGGCAGCGGGAGCGAAGGATGCGGCTGAAACTCCAAGCTTATCCTGAAGGTACTCGACGAGTTTCTGGGCATC</genome_strand>
        <mrna_strand>TCGATTTTTTTTTTTTTTTTTTCATAAGCAAAGACGACTGAAAAAACTTGATTTGAGAAAATTGAGTACAAGTATATCTAACAACTGAATTCTCTTGCGAAAACACAACTAAGAACGAACATTTACCACAAATTTGTTTAAGCAATAGAAACTTTAGCACCAGCTTCTTCAAGTTGTTTCTTAGCATCTTCAGCCTCATCCTTGGAAACACCCTCCTTAAATTTCTTAGGCAATCCTTCAATCAATTCCTTAGCCTCTTTCAATGCCAAACTTGTTAAAGCCCTAACAGCCTTAATGGTCGCAATTCTAGCATTACTCGGCACTTCATCGATGACTACATCAAATTCCGTCTTCTCCTCAACCACAGCTGGAGCATCTGCGGCTGCGCCACCAGGGGAAGCGACGACGGCAGCGGGAGCGAAGGATGCGGCTGAAACTCCAAGCTTATCCTGAAGGTACTCGACGAGTTTCTGGGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E295393" ref_strand="+" ref_description="SGN-E295393 [cLET-23-D17]">
      <seq>ttttttttttttttttttttttaagcaaagacgactgaaaaaacttgatttgagaaaattgagtacaagtatatctaacaactgaattctcttgcgaaaacacaactaagaacgaacatttaccacaaatttgtttaagcaatagaaactttagcaccagcttcttcaagttgtttcttagcatcttcagcctcatccttggaaacaccctccttaaatttcttaggcaatccttcaatcaattccttagcctctttcaatgccaaacttgttaaagccctaacagccttaatggtcgcaattctagcattactcggcacttcatcgatgactacatcaaattccgtcttctcctcaaccacagctggagcatctgcggctgcgccaccaggggaagcgacgacggcagcgggagcgaaggatgcggctgaaactccaagcttatcctgaaggtactcgacgagtttctgggcatcagcgagggttaagttggagatttcatctccgagctggactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="+" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="79500" stop="91844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91027" g_stop="91544" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="+" ref_id="SGN-E295393" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91027" e_stop="91544"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGGAACAATCACAAATCATAAGCAAAGACGACTGAAAAAACTTGATTTGAGAAAATTGAGTACAAGTATATCTAACAACTGAATTCTCTTGCGAAAACACAACTAAGAACGAACATTTACCACAAATTTGTTTAAGCAATAGAAACTTTAGCACCAGCTTCTTCAAGTTGTTTCTTAGCATCTTCAGCCTCATCCTTGGAAACACCCTCCTTAAATTTCTTAGGCAATCCTTCAATCAATTCCTTAGCCTCTTTCAATGCCAAACTTGTTAAAGCCCTAACAGCCTTAATGGTCGCAATTCTAGCATTACTCGGCACTTCATCGATGACTACATCAAATTCCGTCTTCTCCTCAACCACAGCTGGAGCATCTGCGGCTGCGCCACCAGGGGAAGCGACGACGGCAGCGGGAGCGAAGGATGCGGCTGAAACTCCAAGCTTATCCTGAAGGTACTCGACGAGTTTCTGGGCATCAGCGAGGGTTAAGTTGGAGATTTCATCTCCGAGCTGGACTAC</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTAAGCAAAGACGACTGAAAAAACTTGATTTGAGAAAATTGAGTACAAGTATATCTAACAACTGAATTCTCTTGCGAAAACACAACTAAGAACGAACATTTACCACAAATTTGTTTAAGCAATAGAAACTTTAGCACCAGCTTCTTCAAGTTGTTTCTTAGCATCTTCAGCCTCATCCTTGGAAACACCCTCCTTAAATTTCTTAGGCAATCCTTCAATCAATTCCTTAGCCTCTTTCAATGCCAAACTTGTTAAAGCCCTAACAGCCTTAATGGTCGCAATTCTAGCATTACTCGGCACTTCATCGATGACTACATCAAATTCCGTCTTCTCCTCAACCACAGCTGGAGCATCTGCGGCTGCGCCACCAGGGGAAGCGACGACGGCAGCGGGAGCGAAGGATGCGGCTGAAACTCCAAGCTTATCCTGAAGGTACTCGACGAGTTTCTGGGCATCAGCGAGGGTTAAGTTGGAGATTTCATCTCCGAGCTGGACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E281367" ref_strand="+" ref_description="SGN-E281367 [cLEL-1-L18]">
      <seq>ttttttttttttttttttttaagcaaagacgactgaaaaaacttgatttgagaaacttgagtacaagtatatctaacaactgaattctcttgcgaaaacacaactaagaacgaacatttaccacaaatttgtttaagcaatagaaactttagcaccagcttcttcaagttgtttcttagcatcttcagcctcatccttggaaacaccctacttaaatttcttaggcaatccttcaatcaattccttagcctctttcaatgccaaacttgttaaagccctaacagccttaatggtcgcaattctagcattactcggcacttcatcgatgactacatcaaattccgtcttctactcaaccacagctggagcatctgcggctgcgccaccaggggaagcgacgacggcagcgggagcgaaggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="+" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="79499" stop="91750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91029" g_stop="91450" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="+" ref_id="SGN-E281367" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281367" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91029" e_stop="91450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGAACAATCACAAATCATAAGCAAAGACGACTGAAAAAACTTGATTTGAGAAAATTGAGTACAAGTATATCTAACAACTGAATTCTCTTGCGAAAACACAACTAAGAACGAACATTTACCACAAATTTGTTTAAGCAATAGAAACTTTAGCACCAGCTTCTTCAAGTTGTTTCTTAGCATCTTCAGCCTCATCCTTGGAAACACCCTCCTTAAATTTCTTAGGCAATCCTTCAATCAATTCCTTAGCCTCTTTCAATGCCAAACTTGTTAAAGCCCTAACAGCCTTAATGGTCGCAATTCTAGCATTACTCGGCACTTCATCGATGACTACATCAAATTCCGTCTTCTCCTCAACCACAGCTGGAGCATCTGCGGCTGCGCCACCAGGGGAAGCGACGACGGCAGCGGGAGCGAAGGATG</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTAAGCAAAGACGACTGAAAAAACTTGATTTGAGAAACTTGAGTACAAGTATATCTAACAACTGAATTCTCTTGCGAAAACACAACTAAGAACGAACATTTACCACAAATTTGTTTAAGCAATAGAAACTTTAGCACCAGCTTCTTCAAGTTGTTTCTTAGCATCTTCAGCCTCATCCTTGGAAACACCCTACTTAAATTTCTTAGGCAATCCTTCAATCAATTCCTTAGCCTCTTTCAATGCCAAACTTGTTAAAGCCCTAACAGCCTTAATGGTCGCAATTCTAGCATTACTCGGCACTTCATCGATGACTACATCAAATTCCGTCTTCTACTCAACCACAGCTGGAGCATCTGCGGCTGCGCCACCAGGGGAAGCGACGACGGCAGCGGGAGCGAAGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E217433" ref_strand="+" ref_description="SGN-E217433 [cLEL-21-N3](-)">
      <seq>catccttcgctcccgctgccgtcgtcgcttcccctggtggcgcagccgcagatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctagaattgcgaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacaacttgaagaagctggtgctaaagtttctattgcttaaacaaatttgtggtaaatgttcgttcttagttgtgttttcgcaagagaattcagttgttagatatacttgtactcaattttctcaaatcaagttttttcagtcgtctttgcttatgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="91750" stop="79502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91450" g_stop="91029" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E217433" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217433" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91450" e_stop="91029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTATGATTTGTGATTGTTCCAG</genome_strand>
        <mrna_strand>CATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTATGAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E281366" ref_strand="+" ref_description="SGN-E281366 [cLEL-1-L16]">
      <seq>ttttttttttttttttttttaagcaaagacgactgaaaaaacttgatttgagaaacttgagtacaagtatatctaacaactgaattctcttgcgaaaacacaactaagaacgaacatttaccacaaatttgtttaagcaatagaaactttagcaccagcttcttcaagttgtttcttagcatcttcagcctcatccttggaaacaccctccttaaatttcttaggcaatccttcaatcaattccttagcctctttcaatgccaaacttgttaaagccctaacagccttaatggtcgcaattctagcattactcggcacttcatcgatgactacatcaaattccgtcttctcctcaaccacagctggagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="+" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="79499" stop="91698"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91029" g_stop="91398" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="+" ref_id="SGN-E281366" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91029" e_stop="91398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGAACAATCACAAATCATAAGCAAAGACGACTGAAAAAACTTGATTTGAGAAAATTGAGTACAAGTATATCTAACAACTGAATTCTCTTGCGAAAACACAACTAAGAACGAACATTTACCACAAATTTGTTTAAGCAATAGAAACTTTAGCACCAGCTTCTTCAAGTTGTTTCTTAGCATCTTCAGCCTCATCCTTGGAAACACCCTCCTTAAATTTCTTAGGCAATCCTTCAATCAATTCCTTAGCCTCTTTCAATGCCAAACTTGTTAAAGCCCTAACAGCCTTAATGGTCGCAATTCTAGCATTACTCGGCACTTCATCGATGACTACATCAAATTCCGTCTTCTCCTCAACCACAGCTGGAGCA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTAAGCAAAGACGACTGAAAAAACTTGATTTGAGAAACTTGAGTACAAGTATATCTAACAACTGAATTCTCTTGCGAAAACACAACTAAGAACGAACATTTACCACAAATTTGTTTAAGCAATAGAAACTTTAGCACCAGCTTCTTCAAGTTGTTTCTTAGCATCTTCAGCCTCATCCTTGGAAACACCCTCCTTAAATTTCTTAGGCAATCCTTCAATCAATTCCTTAGCCTCTTTCAATGCCAAACTTGTTAAAGCCCTAACAGCCTTAATGGTCGCAATTCTAGCATTACTCGGCACTTCATCGATGACTACATCAAATTCCGTCTTCTCCTCAACCACAGCTGGAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735704" ref_strand="+" ref_description="SGN-E735704 [LC02CG03]">
      <seq>cactctcccaatttctctttagctcagctacaatggcttccacattatccacaattacccttcgttctccctctcctatttctccagcaaccgcaagctccacgcacgcttcaatttccttccccaccaaaaccctagaacttcccattcgcactcccaaactgtaccaccgccgggcaactctcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggagatgaaatctccaacttaaccctcgctgatgcccagaaactcgtcgagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgcttcccctggtggcgcagccgcagatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctagaattgcgaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacaacttgaagaagctggtgctaaagtttctattgcttaaacaaatttgtggtaaatgttcgttcttagttgtgttttcgcaagagaattcagttgttagatatacttgtactcaattttctcaaatcaagttttttcagtcgtctttgcttatgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="92065" stop="90745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91765" g_stop="91033" g_length="733"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="733" r_length="733" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E735704" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735704" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91765" e_stop="91033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTATGATTTGTGATTGTT</genome_strand>
        <mrna_strand>CACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTATGAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E736817" ref_strand="+" ref_description="SGN-E736817 [LC07BD11]">
      <seq>cactctcccaatttctctttagctcagctacaatggcttccacattatccacaattacccttcgttctccctctcctatttctccagcaaccgcaagctccacgcacgcttcaatttccttccccaccaaaaccctagaacttcccattcgcactcccaaactgtaccaccgccgggcaactctcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggagatgaaatctccaacttaaccctcgctgatgcccagaaactcgtcgagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgcttcccctggtggcgcagccgcagatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctagaattgcgaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacaacttgaagaagctggtgctaaagtttctattgcttaaacaaatttgtggtaaatgttcgttcttagttgtgttttcgcaagagaattcagttgttagatatacttgtactcaattttctcaaatcaagttttttcagtcgtctttgcttatgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="92065" stop="90745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91765" g_stop="91033" g_length="733"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="733" r_length="733" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E736817" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91765" e_stop="91033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTATGATTTGTGATTGTT</genome_strand>
        <mrna_strand>CACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTATGAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730239" ref_strand="+" ref_description="SGN-E730239 [LA23CB01]">
      <seq>cctaactaggcactctcccaatttctctttagctcagctacaacgtcttccacattatccacaattacccttcgttctccctctcctatttctccagcaaccgcaagctccacgcacgcttcaatttccttccccaccaaaaccctagaacttcccattcgcactcccaaactgtaccaccgccgggcaactctcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggagatgaaatctccaacttaaccctcgctgatgcccagaaactcgtcgagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgcttcccctggtggcgcagccgcagatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctagaattgcgaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacaacttgaagaagctggtgctaaagtttctattgcttaaacaaatttgtggtaaatgttcgttcttagttgtgttttcgcaagagaattcagttgttagatatacttgtactcaattttctcaaatcaagttttttcagtcgtctttgcttatgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="92065" stop="90745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91776" g_stop="91035" g_length="742"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="741" r_length="741" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E730239" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91776" e_stop="91035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCCTCTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTATGATTTGTGATTG</genome_strand>
        <mrna_strand>CCTAACT-AGGCACTCTCCCAATTTCTCTTTAGCTCAGCTACAACGTCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTATGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284929" ref_strand="+" ref_description="SGN-E284929 [cLER-19-H14]">
      <seq>accggagaaggtagtccagctcggagatgaaatctccaacttaaccctcgctgatgcccagaaactcgtcgagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgcttcccctggtggcgcagccgcagatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctagaattgcgaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacaacttgaagaagctggtgctaaagtttctattgcttaaacaaatttgtggtaaatgttcgttcttagttgtgttttcgcaagagaattcagttgttagatatacttgtactcaattttctcaaatcaagttttttcagtcgtctttgcttatgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="91854" stop="90745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91554" g_stop="91035" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E284929" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284929" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91554" e_stop="91035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTATGATTTGTGATTG</genome_strand>
        <mrna_strand>ACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTATGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E402214" ref_strand="+" ref_description="SGN-E402214 [PPC-7-G11]">
      <seq>cgccgagccactttcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggagatgaaatctccaacttaaccctcgccgatgcccagaaactcgtagagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgctgcccctggtggcgcagccgcagatgctccacctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtaccgagtaatgctagaattgcgactattaaggctgttagggctttaacaagtttggctttgaaagaggcgaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacagcttgaagaagctggtgctaaagtttctattgcttaaataaatttgtggtaaatgttcaatcttatttgtattttcgcaagagaattcagttgttagatatacttgtacccaattttctaaaatcaagtttattcagccctttttgcttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="91895" stop="90748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91595" g_stop="91037" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E402214" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E402214" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91595" e_stop="91037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTATGATTTGTGAT</genome_strand>
        <mrna_strand>CGCCGAGCCACTTTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCCGATGCCCAGAAACTCGTAGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCACCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTACCGAGTAATGCTAGAATTGCGACTATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCTTTGAAAGAGGCGAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAATAAATTTGTGGTAAATGTTCAATCTTATTTGTATTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACCCAATTTTCTAAAATCAAGTTTATTCAGCCCTTTTTGCTTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726992" ref_strand="+" ref_description="SGN-E726992 [LA13BF06]">
      <seq>ttctttcactctcccaatttctctttagctcagctacaatggcttccacattatccacaattacccttcgttctccctctcctatttctccagcaaccgcaagctccacgcacgcttcaatttccttccccaccaaaaccctagaacttcccattcgcactcccaaactgtaccaccgccgggcaactctcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggagatgaaatctccaacttaaccctcgctgatgcccagaaactcgtcgagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgcttcccctggtggcgcagccgcagatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctagaattgcgaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacaacttgaagaagctggtgctaaagtttctattgcttaaacaaatttgtggtaaatgttcgttcttagttgtgttttcgcaagagaattcagttgttagatatacttgtactcaattttctcaaatcaagttttttcagtcgtctttgcttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="92070" stop="90748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91771" g_stop="91038" g_length="734"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="734" r_length="734" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E726992" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91771" e_stop="91038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTATGATTTGTGA</genome_strand>
        <mrna_strand>TTCTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733405" ref_strand="+" ref_description="SGN-E733405 [LB04DE03]">
      <seq>ctctctctttcactctcccaatttctctttagctcagctacaatggcttccacattatccacaattacccttcgttctccctctcctatttctccagcaaccgcaagctccacgcacgcttcaatttccttccccaccaaaaccctagaacttcccattcgcactcccaaactgtaccaccgccgggcaactctcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggagatgaaatctccaacttaaccctcgctgatgcccagaaactcgtcgagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgcttcccctggtggcgcagccgcagatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctagaattgcgaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacaacttgaagaagctggtgctaaagtttctattgcttaaacaaatttgtggtaaatgttcgttcttagttgtgttttcgcaagagaattcagttgttagatatacttgtactcaattttctcaaatcaagttttttcagtcgtctttgcttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="92075" stop="90748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91775" g_stop="91039" g_length="737"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="737" r_length="737" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E733405" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91775" e_stop="91039"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCTCTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTATGATTTGTG</genome_strand>
        <mrna_strand>CTCTCTCTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728005" ref_strand="+" ref_description="SGN-E728005 [LA16BF06]">
      <seq>ctctttcactctcccaatttctctttagctcagctacaatggcttccacattatccacaattacccttcgatctccctctcctatttctccagcaaccgcaagctccacgcacgcttcaatttccttccccaccaaaaccctagaacttcccattcgcactcccaaactgtaccaccgccgggcaactctcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggagatgaaatctccaacttaaccctcgctgatgcccagaaactcgtcgagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgcttcccctggtggcgcagccgcagatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctacaattgcgaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaataaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacaacttgaagaagctggtgctaaagtttctattgcttaaacaaatttgtgataaatgttcgttcttagttgtgttttcgcaagagaattcagttgttagatatacttgtactcaattttctcaaatcaagttttttcagtcgtctttgcttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="92071" stop="90748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91771" g_stop="91039" g_length="733"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="733" r_length="733" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E728005" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91771" e_stop="91039"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTATGATTTGTG</genome_strand>
        <mrna_strand>CTCTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGATCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTACAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAATAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGATAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E616320" ref_strand="+" ref_description="SGN-E616320 [66128]">
      <seq>cactttcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggagatgaaatctccaacttaaccctcgccgatgcccagaaacttgtcgagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgctgcccctggtggcgcagccgcagatgctccacctgtggttgaggagaaaacggaatttgatgtagtcatcgatgaagtaccgagtaatgctagaattgcaactattaaggctgttagggctttaacaagtttggctttgaaagaggcgaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacagcttgaagaagctggtgctaaagtttctattgcttaaataaatttgtggtaaatgttcaatcttatttgtattttcgcaagagaattcagttgttagatatacttgtacccaattttctaaaatcaagtttattcagccctctttgcttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="91886" stop="90748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91587" g_stop="91041" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E616320" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E616320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91587" e_stop="91041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTATGATTTG</genome_strand>
        <mrna_strand>CACTTTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCCGATGCCCAGAAACTTGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCACCTGTGGTTGAGGAGAAAACGGAATTTGATGTAGTCATCGATGAAGTACCGAGTAATGCTAGAATTGCAACTATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCTTTGAAAGAGGCGAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAATAAATTTGTGGTAAATGTTCAATCTTATTTGTATTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACCCAATTTTCTAAAATCAAGTTTATTCAGCCCTCTTTGCTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E615321" ref_strand="+" ref_description="SGN-E615321 [65118]">
      <seq>cttggagtttcagccgcatccttcgctccggctgccgttgtcgctgcccctggtggcgcagccgcagatgctccacctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtaccgagtaatgctagaattgcgactattaaggctgttagggctttaacaagtttggctttgaaagaggcgaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacagcttgaagaagctggtgctaaagtttctattgcttaaataaatttgtggtaaatgttcactcttatttgtgttttcgcaagagaattcagttgttagatatacttgtacccaattttctaaaatcaagtttattcagccctcttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="91766" stop="90754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91466" g_stop="91043" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E615321" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E615321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91466" e_stop="91043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTATGATT</genome_strand>
        <mrna_strand>CTTGGAGTTTCAGCCGCATCCTTCGCTCCGGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCACCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTACCGAGTAATGCTAGAATTGCGACTATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCTTTGAAAGAGGCGAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAATAAATTTGTGGTAAATGTTCACTCTTATTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACCCAATTTTCTAAAATCAAGTTTATTCAGCCCTCTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730222" ref_strand="+" ref_description="SGN-E730222 [LA23BH05]">
      <seq>cttacaaaggctctcccaatttctctttagctcagctacaatgctttccacattatccacaattacccttcgttctccctctcctatttctccagcaaccgcaagctccacgcacgcttcaatttccttccccaccaaaaccctagaacttcccattcgcactcccaaactgtaccaccgccgggcaactctcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggagatgaaatctccaacttaaccctcgctgatgcccagaaactcgtcgagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgcttcccctggtggcgcagccgcagatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctagaattgcgaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacaacttgaagaagctggtgctaaagtttctattgcttaaacaaatttgtggtaaatgttcgttcttagttgtgttttcgcaagagaattcagttgttagatatacttgtactcaattttctcaaatcaagttttttcagtcgtctttgcttatgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="92063" stop="90745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91773" g_stop="91046" g_length="728"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="728" r_length="728" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="729" polyA_stop="743"/>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E730222" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91773" e_stop="91046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTCTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTATG</genome_strand>
        <mrna_strand>CTTACAAAGGCTCTCCCAATTTCTCTTTAGCTCAGCTACAATGCTTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E732166" ref_strand="+" ref_description="SGN-E732166 [LB01BG11]">
      <seq>ccccttctttcactctcccaatttctctttagctcagctacaatggcttccacattatccacaattacccttcgttctccctctcctatttctccagcaaccgcaagctccacgcacgcttcaatttccttccccaccaaaaccctagaacttcccattcgcactcccaaactgtaccaccgccgggcaactctcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggagatgaaatctccaacttaaccctcgctgatgcccagaaactcgtcgagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgcttcccctggtggcgcagccgcagatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctagaattgcgaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacaacttgaagaagctggtgctaaagtttctattgcttaaacaaatttgtggtaaatgttcgttcttagttgtgttttcgcaagagaattcagttgttagatatacttgtactcaattttctcaaatcaagttttttcagtcgtctttgcttaaaaaaanaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="92073" stop="90748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91775" g_stop="91049" g_length="727"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="727" r_length="727" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="728" polyA_stop="748"/>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E732166" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91775" e_stop="91049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCTCTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTT</genome_strand>
        <mrna_strand>CCCCTTCTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E353406" ref_strand="+" ref_description="SGN-E353406 [cTOS-15-P13]">
      <seq>cctggtggcgcagccgcagatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctagaattgcgaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacaacttgaagaagctggtgctaaagtttctattgcttaaacaaatttgtggtaaatgttcgttcttagttgtgttttcgcaagagaattcagttgttagatatacttgtactcaattttctcaaatcaagttttttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="91718" stop="90762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91418" g_stop="91053" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E353406" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91418" e_stop="91053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTT</genome_strand>
        <mrna_strand>CCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E354526" ref_strand="+" ref_description="SGN-E354526 [cTOS-17-M17]">
      <seq>cctggtggcgcagccgcagatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctagaattgcgaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacaacttgaagaagctggtgctaaagtttctattgcttaaacaaatttgtggtaaatgttcgttcttagttgtgttttcgcaagagaattcagttgttagatatacttgtactcaattttctcaaatcaagttttttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="91718" stop="90762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91418" g_stop="91053" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E354526" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91418" e_stop="91053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTT</genome_strand>
        <mrna_strand>CCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E597509" ref_strand="+" ref_description="SGN-E597509 [67378]">
      <seq>gctgaataaacttgattttagaaaattgggtacaagtatatctaacaactgaattctcttgcgaaaatacaaataagattgaacatttaccacaaatttatttaagcaatagaaactttagcaccagcttcttcaagctgtttcttagcatcttcagcctcatccttggaaacaccctccttaaatttcttaggcaatccttcaatcaattccttcgcctctttcaaagccaaacttgttaaagccctaacagccttaatagttgcaattctagcattactcggtacttcatcgatgactacatcaaattccgttttctcctcaaccacaggtggagcatctgcggctgcgccaccaggggcagcgacgacggcagcgggagcgaaggatgcggctgaaactccaagcttatcctgaaggtactcgacaagtttctgggcatcggcgagggttaagttggagatttcatctccgagctggactaccttctccggtgcttcgacggcggcgagagggcggacgaaagtggctcggcggtggtggagtttgggagtgcgaatggggagttctagggtttgggtagggaatgaaattgaagcgtgcgtggagcttacggttgattgagaaataggagagggagaacgaagggcaattgtggataatgtggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="+" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="90761" stop="92029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91060" g_stop="91729" g_length="670"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="670" r_length="670" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="+" ref_id="SGN-E597509" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E597509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91060" e_stop="91729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAAAAAACTTGATTTGAGAAAATTGAGTACAAGTATATCTAACAACTGAATTCTCTTGCGAAAACACAACTAAGAACGAACATTTACCACAAATTTGTTTAAGCAATAGAAACTTTAGCACCAGCTTCTTCAAGTTGTTTCTTAGCATCTTCAGCCTCATCCTTGGAAACACCCTCCTTAAATTTCTTAGGCAATCCTTCAATCAATTCCTTAGCCTCTTTCAATGCCAAACTTGTTAAAGCCCTAACAGCCTTAATGGTCGCAATTCTAGCATTACTCGGCACTTCATCGATGACTACATCAAATTCCGTCTTCTCCTCAACCACAGCTGGAGCATCTGCGGCTGCGCCACCAGGGGAAGCGACGACGGCAGCGGGAGCGAAGGATGCGGCTGAAACTCCAAGCTTATCCTGAAGGTACTCGACGAGTTTCTGGGCATCAGCGAGGGTTAAGTTGGAGATTTCATCTCCGAGCTGGACTACCTTCTCCGGTGCTTCGACGGCGGCGAGAGGGCGGACGAGAGTTGCCCGGCGGTGGTACAGTTTGGGAGTGCGAATGGGAAGTTCTAGGGTTTTGGTGGGGAAGGAAATTGAAGCGTGCGTGGAGCTTGCGGTTGCTGGAGAAATAGGAGAGGGAGAACGAAGGGTAATTGTGGATAATGTGGAAG</genome_strand>
        <mrna_strand>GCTGAATAAACTTGATTTTAGAAAATTGGGTACAAGTATATCTAACAACTGAATTCTCTTGCGAAAATACAAATAAGATTGAACATTTACCACAAATTTATTTAAGCAATAGAAACTTTAGCACCAGCTTCTTCAAGCTGTTTCTTAGCATCTTCAGCCTCATCCTTGGAAACACCCTCCTTAAATTTCTTAGGCAATCCTTCAATCAATTCCTTCGCCTCTTTCAAAGCCAAACTTGTTAAAGCCCTAACAGCCTTAATAGTTGCAATTCTAGCATTACTCGGTACTTCATCGATGACTACATCAAATTCCGTTTTCTCCTCAACCACAGGTGGAGCATCTGCGGCTGCGCCACCAGGGGCAGCGACGACGGCAGCGGGAGCGAAGGATGCGGCTGAAACTCCAAGCTTATCCTGAAGGTACTCGACAAGTTTCTGGGCATCGGCGAGGGTTAAGTTGGAGATTTCATCTCCGAGCTGGACTACCTTCTCCGGTGCTTCGACGGCGGCGAGAGGGCGGACGAAAGTGGCTCGGCGGTGGTGGAGTTTGGGAGTGCGAATGGGGAGTTCTAGGGTTTGGGTAGGGAATGAAATTGAAGCGTGCGTGGAGCTTACGGTTGATTGAGAAATAGGAGAGGGAGAACGAAGGGCAATTGTGGATAATGTGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E202748" ref_strand="+" ref_description="SGN-E202748 [cLEB-1-M18]">
      <seq>gcacgagctttcactctcccaatttctctttagctcagctacaatggcttccacattatccacaattacccttcgttctccctctcctatttctccagcaaccgcaagctccacgcacgcttcaatttccttccccaccaaaaccctagaacttcccattcgcactcccaaactgtaccaccgccgggcaactctcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggagatgaaatctccaacttaaccctcgctgatgcccagaaactcgtcgagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgcttcccctggtggcgcagccgcagatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctagaattgcgaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacaacttgaagaagctggtgctaaagtttctattgcttaaacaaatttgtggtaaatgttcgttcttagttgtgttttcgcaagagaattcagttgttagatatacttgtactcaaatttctcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="92069" stop="90776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91776" g_stop="91076" g_length="701"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="701" r_length="701" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E202748" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91776" e_stop="91076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCCTCTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAA</genome_strand>
        <mrna_strand>GCACGAGCTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAAATTTCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E615725" ref_strand="+" ref_description="SGN-E615725 [65527]">
      <seq>gataagcttggagtttcagccgcatccttcgctccggctgccgttgtcgctgcccctggtggcgcagccgcagatgctccacctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtaccgagtaatgctagaattgcgactattaaggctgttagggctttaacaagtttggctttgaaagaggcgaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacagcttgaagaagctggtgctaaagtttctattgcttaaataaatttgtggtaaatgttcactcttatttgtgttttcgcaagagaattcagttgttagatatacttgtacccaattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="91772" stop="90780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91472" g_stop="91080" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E615725" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E615725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91472" e_stop="91080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTC</genome_strand>
        <mrna_strand>GATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCGGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCACCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTACCGAGTAATGCTAGAATTGCGACTATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCTTTGAAAGAGGCGAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAATAAATTTGTGGTAAATGTTCACTCTTATTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACCCAATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E572916" ref_strand="+" ref_description="SGN-E572916 [32145]">
      <seq>catttcattccctaccaaaaccctagaactccccattcgcactcccaaactccaccaccgccgagccactttcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggagatgaaatctccaacttaaccctcgccgatgcccagaaacttgtcgagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgctgcccctggtggcgcagccgcagatgctccacctgtggttgaggagaaaacggaatttgatgtagtcatcgatgaagtaccgagtaatgctagaattgcaactattaaggctgttagggctttaacaagtttggctttgaaagaggcgaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacagcttgaagaagctggtgctaaagtttctattgcttaaataaatttgtggtaaatgttcaatcttatttgtattttcgcaagagaattcagttgttaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="91952" stop="90800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91653" g_stop="91100" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E572916" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E572916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91653" e_stop="91100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGA</genome_strand>
        <mrna_strand>CATTTCATTCCCTACCAAAACCCTAGAACTCCCCATTCGCACTCCCAAACTCCACCACCGCCGAGCCACTTTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCCGATGCCCAGAAACTTGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCACCTGTGGTTGAGGAGAAAACGGAATTTGATGTAGTCATCGATGAAGTACCGAGTAATGCTAGAATTGCAACTATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCTTTGAAAGAGGCGAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAATAAATTTGTGGTAAATGTTCAATCTTATTTGTATTTTCGCAAGAGAATTCAGTTGTTAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E343379" ref_strand="+" ref_description="SGN-E343379 [cTOF-19-C22]">
      <seq>cctctttcactctcccaatttctctttagctcagctacaatggcttccacattatccacaattacccttcgttctccctctcctatttctccagcaaccgcaagctccacgcacgcttcaatttccttccccaccaaaaccctagaacttcccattcgcactcccaaactgtaccaccgccgggcaactctcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggagatgaaatctccaacttaaccctcgctgatgcccagaaactcgtcgagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgcttcccctggtggcgcagccgcagatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctagaattgcgaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacaacttgaagaagctggtgctaaagtttctattgcttaacaaatttgtggtaaatgttcgttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="92072" stop="90835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91772" g_stop="91134" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E343379" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91772" e_stop="91134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTT</genome_strand>
        <mrna_strand>CCTCTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTT-AACAAATTTGTGGTAAATGTTCGTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E346626" ref_strand="+" ref_description="SGN-E346626 [cTOF-28-J18]">
      <seq>ctccctctttcactctcccaatttctctttagctcagctaccaatggcttccacattatccacaattacccttcgttctccctctcctatttctccagcaaccgcaagctccacgcacgcttcaatttccttccccaccaaaaccctagaacttcccattcgcactcccaaactgtaccaccgccgggcaactctcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggagatgaaatctccaacttaaccctcgctgatgcccagaaactcgtcgagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgcttcccctggtggcgcagccgcagatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctagaattgcgaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacaacttgaagaagctggtgctaaagtttctattgcttaaacaaatttgtggtaaatgttcgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="92075" stop="90837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91775" g_stop="91137" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="640" r_length="640" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E346626" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91775" e_stop="91137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCTCTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTA-CAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTT</genome_strand>
        <mrna_strand>CTCCCTCTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACCAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E613457" ref_strand="+" ref_description="SGN-E613457 [63232]">
      <seq>ttctttcactcccttctcctcttttcaattcctctttagctctgccactatggcttccacattatccacaattacccttcgttctccctctcctatttctccagcaaccgcaagctccgggcacgcatcaatttccttccctaccaaaaccctagaactccccattcgcactcccaaactccaccaccgccgagccactttcgtccgccctctcgccgccgtcgaagcacctgagaaggtagtacagctcggagatgaaatatccactctaaccctcgctgatgcccagaaactcgtcgagtaccttcaggataagcttggtgtttcagccgcatccttcgctcctgctgccgtcgtcgccgcccctggtggcgcagccgcagatgctccacctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtaccgagtaatgctagaattgcgactattaaggctgttagggctttaacaagtttggctttgaaagaagcgaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacagctagaagaagctggtgctaaagtttctattgcttaaatgaatttgtggtacatgttcattcttatttggttttgattatctgggcaaattactgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="92084" stop="90823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91783" g_stop="91150" g_length="634"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="633" r_length="633" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E613457" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E613457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91783" e_stop="91150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTATCTCCCTCTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTG</genome_strand>
        <mrna_strand>TTCTTTCACTCCCTTCTCCTCT-TTTCAATTCCTCTTTAGCTCTGCCACTATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCGGGCACGCATCAATTTCCTTCCCTACCAAAACCCTAGAACTCCCCATTCGCACTCCCAAACTCCACCACCGCCGAGCCACTTTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCTGAGAAGGTAGTACAGCTCGGAGATGAAATATCCACTCTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTCGTCGCCGCCCCTGGTGGCGCAGCCGCAGATGCTCCACCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTACCGAGTAATGCTAGAATTGCGACTATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCTTTGAAAGAAGCGAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTAGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAATGAATTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E202938" ref_strand="+" ref_description="SGN-E202938 [cLEB-1-L18]">
      <seq>gcacgagctttcactctcccaatttctctttagctcagctacaatggcttccacattatccacaattacccttcgttctccctctcctatttctccagcaaccgcaagctccacgcacgcttcaatttccttccccaccaaaaccctagaacttcccattcgcactcccaaactgtaccaccgccgggcaactctcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggagatgaaatctccaacttaaccctcgctgatgcccagaaactcgtcgagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgcttcccctggtggcgcagccgcagatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctagaattgcgaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacaacttgaagaagctggtgctaaagtttctattgcttaaacaaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="92069" stop="90852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91776" g_stop="91152" g_length="625"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="625" r_length="625" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E202938" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91776" e_stop="91152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCCTCTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTG</genome_strand>
        <mrna_strand>GCACGAGCTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E415827" ref_strand="+" ref_description="SGN-E415827 [STM-22-C15]">
      <seq>ctcaattcctctttagctctgctacaatggcttccacattatccacaattacccttcgttctccctctcctatttctccagcaaccgcaagctccacgtacgcatcaatttccttccctaccaaaaccctagaactccccattggctctcccaaactccaccaccgccgagccactttcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtacagctcggagatgaaatctccactctaactctcgctgatgcgcagaaactcgttgagtaccttcaggataagcttggtgtttcggccgcatccttcgctcctgctgcggtcgtcgccgctcctggtggcgcagccgcagatgctccagctgtggttgaagagaagacggaatttgacgtagtcatcgatgaagtgccgagtaatgctagaattgcgactattaaggctgttagggctttaacaagtttggctttgaaagaagctaaggaattgattgaaggattgcctaagaaattaaggagggntgtttccaggatgaggctgaagatgctaagaaacagctagaagaagctggtgctaaagtttctattgcttaaatgagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="92059" stop="90854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91759" g_stop="91154" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="605" r_length="605" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E415827" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E415827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91759" e_stop="91154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGG-TGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATT</genome_strand>
        <mrna_strand>CTCAATTCCTCTTTAGCTCTGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGTACGCATCAATTTCCTTCCCTACCAAAACCCTAGAACTCCCCATTGGCTCTCCCAAACTCCACCACCGCCGAGCCACTTTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTACAGCTCGGAGATGAAATCTCCACTCTAACTCTCGCTGATGCGCAGAAACTCGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCGGCCGCATCCTTCGCTCCTGCTGCGGTCGTCGCCGCTCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACTATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCTTTGAAAGAAGCTAAGGAATTGATTGAAGGATTGCCTAAGAAA-TTAAGGAGGGNTGTTTCC-AGGATGAGGCTGAAGATGCTAAGAAACAGCTAGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAATGAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E561912" ref_strand="+" ref_description="SGN-E561912 [20273]">
      <seq>caggctctcctcaattcctctttagctctgctacaatggcttccacattatccacaattacccttcgttctccctctcctatttctccagcaaccgcaagctccacgcacgcatcaatttccttccctaccaaaaccctagaactccccattggttcgcccaaactccaccaccgccgagccactttcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtacagcttggagatgaaatctccactctaactctcgctgatgcgcagaaactcgttgagtaccttcaggataagcttggtgtttcagccgcatccttcgctcctgctgcggtcgtcgccgctcctggtggcgcagccgcagatgctccagctgtggttgaagagaagacggaatttgacgtagtcatcgatgaagtgccgagtaatgctagaattgcgactattaaggctgttagggctttaacaagtttggctttgaaagaagctaaggaattgatcgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacagctagaagaagctggtgctaaagtttctattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="92063" stop="90865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91769" g_stop="91165" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="604" r_length="604" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E561912" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E561912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91769" e_stop="91165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGC</genome_strand>
        <mrna_strand>CAGGCTCTC-CTCAATTCCTCTTTAGCTCTGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCATCAATTTCCTTCCCTACCAAAACCCTAGAACTCCCCATTGGTTCGCCCAAACTCCACCACCGCCGAGCCACTTTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTACAGCTTGGAGATGAAATCTCCACTCTAACTCTCGCTGATGCGCAGAAACTCGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCGGTCGTCGCCGCTCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACTATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCTTTGAAAGAAGCTAAGGAATTGATCGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTAGAAGAAGCTGGTGCTAAAGTTTCTATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E343708" ref_strand="+" ref_description="SGN-E343708 [cTOF-20-H19]">
      <seq>tttcactctcccaatttctctttagctcagctacaatggcttccacattatccacaattacccttcgttctccctctcctatttctccagcaaccgcaagctccacgcacgcttcaatttccttccccaccaaaaccctagaacttcccattcgcactcccaaactgtaccaccgccgggcaactctcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggagatgaaatctccaacttaaccctcgctgatgcccagaaactcgtcgagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgcttcccctggtggcgcagccgcagatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctagaattgcgaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaggaggggtgtttccaaggatgaggctgaagatgctaagaaacaacttgaaaaagctggtgctaaagtttctattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="92068" stop="90865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91768" g_stop="91165" g_length="604"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="604" r_length="604" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E343708" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91768" e_stop="91165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGC</genome_strand>
        <mrna_strand>TTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAGGAGGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAAAAGCTGGTGCTAAAGTTTCTATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E298451" ref_strand="+" ref_description="SGN-E298451 [cLET-41-G1]">
      <seq>cgcacgcttcaatttccttccccaccaaaaccctagaacttcccattcgcactcccaaactgtaccaccgccgggcaactctcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggagatgaaatctccaacttaaccctcgctgatgcccagaaactcgtcgagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgcttcccctggtggcgcagccgcagatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctagaattgcgaccattaatgctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacaacttgaagaagctggtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="91963" stop="90880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91663" g_stop="91180" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E298451" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91663" e_stop="91180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGC</genome_strand>
        <mrna_strand>CGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAATGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E723938" ref_strand="+" ref_description="SGN-E723938 [FC22CA11]">
      <seq>aatggcttccacattatccacaattacccttcgttctccctctcctatttctccagcaaccgcaagctccacgcacgcttcaatttccttccccaccaaaaccctaaaacttcccattcgcacatcccaaactgtaccaccgccgggcaactctcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggagatgaaatctccaacttaaccctcgctgatgcccagaaactcgtcgagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgcttcccctggtggcgcagccgcaaatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctaaaattgcgaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaaaaaacaacttgaaaaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="92034" stop="90885"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91734" g_stop="91185" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="551" r_length="551" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E723938" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91734" e_stop="91185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCAC-TCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCT</genome_strand>
        <mrna_strand>AATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAAAACTTCCCATTCGCACATCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAAATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAAAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAAAAACAACTTGAAAAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E462341" ref_strand="+" ref_description="SGN-E462341 [cPRO-11-K8]">
      <seq>atttctctttagctctgctacaatggcttccacattatccacaattgcccttcgttctccctctcctctttctcaatcaaccgtaagctccacgcacgcttcaatttcattccctaccaaaaccctagaactccccattcgcactcccaaactccaccaccgccgagccactttcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggagatgaaatctccaacttaaccctcgccgatgcccagaaactcgtagagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgctgcccctggtggcgcagccgcagatgctccacctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtaccgagtaatgctagaattgcgactattaaggctgttagggctttaacaagtttggctttgaaagaggcgaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacagctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="92055" stop="90894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91755" g_stop="91194" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="562" r_length="562" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E462341" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E462341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91755" e_stop="91194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTT</genome_strand>
        <mrna_strand>ATTTCTCTTTAGCTCTGCTACAATGGCTTCCACATTATCCACAATTGCCCTTCGTTCTCCCTCTCCTCTTTCTCAATCAACCGTAAGCTCCACGCACGCTTCAATTTCATTCCCTACCAAAACCCTAGAACTCCCCATTCGCACTCCCAAACTCCACCACCGCCGAGCCACTTTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCCGATGCCCAGAAACTCGTAGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCACCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTACCGAGTAATGCTAGAATTGCGACTATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCTTTGAAAGAGGCGAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735921" ref_strand="+" ref_description="SGN-E735921 [LC03CG03]">
      <seq>cgttctctcccaatttctcttcagctcagctagcatggcctccaccttatccacaatgacccttcggtctccctctcctatttctccagcaaccgcaagctccacgcacgcttcaattgccttccccaccaagaccctagaacttcccattggcacgcccaaagtgtaccaccgccgggcaactcgcgtccgccctctcgccgccggcgaagcacacggagaaggtagtccagctcggagatgaaatctcggacttaaccctcgctgatgcccacaaactcgacgagaaccttcaggataagcttggagattcagccgcatccttcgctcccgctgccgtcgccacttcccctggtggcgcagccgcaaatgctccatctgtggttgaagagaagacggaatttgatgcatccatcgatgaggtgccgagtaatgctagaattgcgaccattaaggctgtgaaggctttaaaaggtttggcattgaaagaggctaaggaattgattgaaggattgcctaaaaaatttaaggagggtgtttccagggatgaggctgaagatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="92063" stop="90907"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91769" g_stop="91207" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="562" r_length="562" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E735921" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91769" e_stop="91207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCAC-CGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGC</genome_strand>
        <mrna_strand>CGTT--CTCTCCCAATTTCTCTTCAGCTCAGCTAGCATGGCCTCCACCTTATCCACAATGACCCTTCGGTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTGCCTTCCCCACCAAGACCCTAGAACTTCCCATTGGCACGCCCAAAGTGTACCACCGCCGGGCAACTCGCGTCCGCCCTCTCGCCGCCGGCGAAGCACACGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCGGACTTAACCCTCGCTGATGCCCACAAACTCGACGAGAACCTTCAGGATAAGCTTGGAGATTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGCCACTTCCCCTGGTGGCGCAGCCGCAAATGCTCCATCTGTGGTTGAAGAGAAGACGGAATTTGATGCATCCATCGATGAGGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTGAAGGCTTTAAAAGGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAAAAATTTAAGGAGGGTGTTTCCAGGGATGAGGCTGAAGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E265877" ref_strand="+" ref_description="SGN-E265877 [cLEI-11-H23]">
      <seq>tctctttagctcagctacaatggcttccacattatccacaattacccttcgttctccctctcctatttctccagcaaccgcaagctccacgcacgcttcaatttccttccccaccaaaaccctagaacttcccattcgcactcccaaactgtaccaccgccgggcaactctcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggagatgaaatctccaacttaaccctcgctgatgcccagaaactcgtcgagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgcttcccctggtggcgcagccgcagatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctagaattgcgaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="92052" stop="90941"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91752" g_stop="91241" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="512" r_length="512" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E265877" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91752" e_stop="91241"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTA</genome_strand>
        <mrna_strand>TCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726103" ref_strand="+" ref_description="SGN-E726103 [LA10BC11]">
      <seq>ctctttcactctcccaatttctctttagctcagctacaatggcttccacattatccacaattacccttcgttctccctctcctatttctccagcaaccgcaagctccacgcacgcttcaatttccttccccaccaaaaccctagaacttcccattcgcactcccaaactgtaccaccgccgggcaactctcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggagatgaaatctccaacttaaccctcgctgatgcccagaaactcgtcgagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgcttcccctggtggcgcagccgcagatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctagaattgcgaccattaaggctgttagggctttaacaagtttggcattgaagaggctaggaattgattgaggattgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="92071" stop="90951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91771" g_stop="91251" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E726103" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91771" e_stop="91251"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCT</genome_strand>
        <mrna_strand>CTCTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTG-AAGAGGCT-AGGAATTGATTG-AGGATTGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286263" ref_strand="+" ref_description="SGN-E286263 [cLES-11-P17]">
      <seq>ttcactctcctaatttctctttagctcagctacaatggctggcacattatccacaattacccttcgttctccctctcctatttctccagcaaccgcaagctccacgcacgcttcaatttccttccccaccaaaaccctagaacttcccattcgcactcccaaactgtaccaccgccgggcaactctcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggagatgaaatctccaacttaaccctcgctgatgcccagaaactcgtcgagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgcttcccctggtggcgcagccgcagatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctagaattgcgaccattaaggctgttagggctttaacaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="92067" stop="90993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91767" g_stop="91293" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E286263" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91767" e_stop="91293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGT</genome_strand>
        <mrna_strand>TTCACTCTCCTAATTTCTCTTTAGCTCAGCTACAATGGCTGGCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286434" ref_strand="+" ref_description="SGN-E286434 [cLES-11-P18]">
      <seq>ttcactctcccaatttctctttagctcagctacaatggctggcacattatccacaattacccttggttctccctctcctatttctccagcaaccgcaagctccacgcacgcttcaatttccttccccaccaaaaccctagaacttcccattcgcactcccaaactgtaccaccgccgggcaactctcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggagatgaaatctccaacttaaccctcgctgatgcccagaaactcgtcgagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgcttcccctggtggcgcagccgcagatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctagaattgcgaccattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="92067" stop="91015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91767" g_stop="91315" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E286434" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91767" e_stop="91315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAA</genome_strand>
        <mrna_strand>TTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTGGCACATTATCCACAATTACCCTTGGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278823" ref_strand="+" ref_description="SGN-E278823 [cLER-2-N3]">
      <seq>ttttgtatctccctctttcactctcccaatttctctttagctcagctacaatggcttccacattatccacaattacccttcgttctccctctcctatttctccagcaaccgcaagctccacgcacgcttcaatttccttccccaccaaaaccctagaacttcccattcgcactcccaaactgtaccaccgccgggcaactctcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggagatgaaatctccaacttaaccctcgctgatgcccagaaactcgtcgagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgcttcccctggtggcgcagccgcagatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctagaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="92083" stop="91025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91783" g_stop="91325" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="459" r_length="459" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E278823" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91783" e_stop="91325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTATCTCCCTCTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTG</genome_strand>
        <mrna_strand>TTTTGTATCTCCCTCTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E282625" ref_strand="+" ref_description="SGN-E282625 [cLER-15-M21]">
      <seq>ttcactctcccaatttctctttagctcagctacaatggcttccacattatccacaattacccttcgttctccctctcctatttctccagcaaccgcaagctccacgcacgcttcaatttccttccccaccaaaaccctagaacttcccattcgcactcccaaactgtaccaccgccgggcaactctcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggagatgaaatctccaacttaaccctcgctgatgcccagaaactcgtcgagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgcttcccctggtggcgcagccgcagatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="92067" stop="91029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91767" g_stop="91329" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E282625" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91767" e_stop="91329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGA</genome_strand>
        <mrna_strand>TTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E296038" ref_strand="+" ref_description="SGN-E296038 [cLET-27-J3]">
      <seq>acaattacccttcgttctccctctcctatttctccagcaaccgcaagctccacgcacgcttcaatttccttccccaccaaaaccctagaacttcccattcgcactcccaaactgtaccaccgccgggcaactctcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggagatgaaatctccaacttaaccctcgctgatgcccagaaactcgtcgagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgcttcccctggtggcgcagccgcagatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="92015" stop="91035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91715" g_stop="91335" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E296038" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91715" e_stop="91335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAAT</genome_strand>
        <mrna_strand>ACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E408097" ref_strand="+" ref_description="SGN-E408097 [PPI-10-C11]">
      <seq>ttcctctttagctctgctacaatggcttccacattatccacaattacccttcgttctccctctcctatttctccagcaaccgcaagctccacgcacgcatcaatttccttccctaccaaaaccctagaactccccattggttcgcccaaactccaccaccgccgagccactttcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtacagcttggagatgaaatctccactctaactctcgctgatgcgcagaaactcgttgagtaccttcaggataagcttggtgtttcagccgcatccttcgctcctgctgcggtcgtcgccgctcctggtggcgcagccgcagatgctccagctgtggttgaagagaaagacggatttgacgtagtcatcgatgaagtgcccgagtatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="92054" stop="91033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91754" g_stop="91338" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E408097" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E408097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91754" e_stop="91338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAG-AAGACGGAATTTGATGTAGTCATCGATGAAGTG-CCGAGT</genome_strand>
        <mrna_strand>TTCCTCTTTAGCTCTGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCATCAATTTCCTTCCCTACCAAAACCCTAGAACTCCCCATTGGTTCGCCCAAACTCCACCACCGCCGAGCCACTTTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTACAGCTTGGAGATGAAATCTCCACTCTAACTCTCGCTGATGCGCAGAAACTCGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCGGTCGTCGCCGCTCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAAGACGG-ATTTGACGTAGTCATCGATGAAGTGCCCGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E282624" ref_strand="+" ref_description="SGN-E282624 [cLER-15-M9]">
      <seq>caatttctctataactcagggggcaatggcttccacatgatccacaattacccttcgttctccctctcctatttctccagcaaccgcaagctccacgcacgcttcaatttccttccccaccaaaaccctagaacttcccattcgcactcccaaactgtaccaccgccgggcaacttctcgtccgccctctcgccgccgtcgaagcaccggagaaggtattccagctcggagatgaaatctccaacttaaccctcgctgatgcccagaaactcgtcgagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgcttcccctggtggcgcagccgcagatgctccagctgtggctgaggagaagacggaatttgatgtaatcatcaatgaagtgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="92035" stop="91042"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91757" g_stop="91342" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E282624" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282624" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91757" e_stop="91342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTCTCTTTAGCTCA-GCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAAC-TCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCC</genome_strand>
        <mrna_strand>CAATTTCTCTATAACTCAGGGGGCAATGGCTTCCACATGATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTATTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGCTGAGGAGAAGACGGAATTTGATGTAATCATCAATGAAGTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E581559" ref_strand="+" ref_description="SGN-E581559 [6729]">
      <seq>ggtagtccagctcggagatgaaatctccaacttaaccctcgctgacgcccagaaactcgtcgagtaccttcaggataagcttggagtttcagccgcatccttcgctccggctgccgttgtcgctgcccctggtggcgcagccgcagatgctccacctgtggttgaggagaagacggaatttgatgtagtcatcgatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="91845" stop="91047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91545" g_stop="91347" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E581559" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>199</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E581559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91545" e_stop="91347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAA</genome_strand>
        <mrna_strand>GGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGACGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCGGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCACCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E476132" ref_strand="+" ref_description="SGN-E476132 [cSTB-43-M20]">
      <seq>cttctttcactcccttctcctcaattcctctttagctctgctacaatggcttccacattatccacaattacccttcgttctccctctcctatttctccagcaaccgcaagctccacgtacgcatcaatttccttccctaccaaaaccctagaactccccattggctctcccaaactccaccaccgccgagccactttcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtacagctcggagatgaaatctccactctaactctcgctgatgcgcagaaactcgttgagtaccttcaggataagcttggtgtttcggccgcatccttcgctcctgctgcggtcgtcgccgctcctggtggcgcagccgcagatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="92074" stop="91095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91780" g_stop="91395" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E476132" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E476132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91780" e_stop="91395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATCTCCCTCTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCT</genome_strand>
        <mrna_strand>CTTCTTTCACTCCCT-TCTC-CTCAATTCCTCTTTAGCTCTGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGTACGCATCAATTTCCTTCCCTACCAAAACCCTAGAACTCCCCATTGGCTCTCCCAAACTCCACCACCGCCGAGCCACTTTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTACAGCTCGGAGATGAAATCTCCACTCTAACTCTCGCTGATGCGCAGAAACTCGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCGGCCGCATCCTTCGCTCCTGCTGCGGTCGTCGCCGCTCCTGGTGGCGCAGCCGCAGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E581558" ref_strand="+" ref_description="SGN-E581558 [6729]">
      <seq>ctcctcaatttctctttagctctgctacaatggcttccacattatccacaattacccttcgttcttcctctcctatttctccatcaaacccaagctccacgcacgcgtcaatttcattccttaccaaaaccctagaactccccattcgcactcccaaactctatcatcggcgagcaacttttgtccggcctctcgccggcggcgaagcaccggagaaggtagtccagctcggagatgaaatctccaacttaaccctcgctgaagcccagaaactcgtcgagtaacttcaggataagcttggagtttcagccgcatccttcgctccggctgtcgttgtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="92061" stop="91124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91763" g_stop="91424" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E581558" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>340</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E581558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91763" e_stop="91424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCG</genome_strand>
        <mrna_strand>CTC-CTCAATTTCTCTTTAGCTCTGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTTCCTCTCCTATTTCTCCATCAAACCCAAGCTCCACGCACGCGTCAATTTCATTCCTTACCAAAACCCTAGAACTCCCCATTCGCACTCCCAAACTCTATCATCGGCGAGCAACTTTTGTCCGGCCTCTCGCCGGCGGCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGAAGCCCAGAAACTCGTCGAGTAACTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCGGCTGTCGTTGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E281577" ref_strand="+" ref_description="SGN-E281577 [cLEL-1-L16](-)">
      <seq>ctcccaagcttatcctgaaggtactcgacgagtttctgggcatcagcgagggttaagttggagatttcatctccgagctggactaccttctccggtgcttcgacggcggcgagagggcggacgagagttgcccggcggtggtacagtttgggagtgcgaatgggaagttctagggttttggtggggaaggaaattgaagcgtgcgtggagcttgcggttgctggagaaataggagagggagaacgaagggtaattgtggataatgtggaagccattgtagctgagctaaagagaaattgggagagtgaaagctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="+" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="91160" stop="92069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91460" g_stop="91776" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="+" ref_id="SGN-E281577" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>317</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91460" e_stop="91776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CT-CCAAGCTTATCCTGAAGGTACTCGACGAGTTTCTGGGCATCAGCGAGGGTTAAGTTGGAGATTTCATCTCCGAGCTGGACTACCTTCTCCGGTGCTTCGACGGCGGCGAGAGGGCGGACGAGAGTTGCCCGGCGGTGGTACAGTTTGGGAGTGCGAATGGGAAGTTCTAGGGTTTTGGTGGGGAAGGAAATTGAAGCGTGCGTGGAGCTTGCGGTTGCTGGAGAAATAGGAGAGGGAGAACGAAGGGTAATTGTGGATAATGTGGAAGCCATTGTAGCTGAGCTAAAGAGAAATTGGGAGAGTGAAAGAGGGAGA</genome_strand>
        <mrna_strand>CTCCCAAGCTTATCCTGAAGGTACTCGACGAGTTTCTGGGCATCAGCGAGGGTTAAGTTGGAGATTTCATCTCCGAGCTGGACTACCTTCTCCGGTGCTTCGACGGCGGCGAGAGGGCGGACGAGAGTTGCCCGGCGGTGGTACAGTTTGGGAGTGCGAATGGGAAGTTCTAGGGTTTTGGTGGGGAAGGAAATTGAAGCGTGCGTGGAGCTTGCGGTTGCTGGAGAAATAGGAGAGGGAGAACGAAGGGTAATTGTGGATAATGTGGAAGCCATTGTAGCTGAGCTAAAGAGAAATTGGGAGAGTGAAAGCTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E281578" ref_strand="+" ref_description="SGN-E281578 [cLEL-1-L18](-)">
      <seq>aggtactcgacgagtttctgggcatcagcgagggttaagttggagatttcatctccgagctggactaccttctccggtgcttcgacggcggcgagagggcggacgagagttgcccggcggtggtacagtttgggagtgcgaatgggaagttctagggttttggtggggaaggaaattgaagcgtgcgtggagcttgcggttgctggagaaataggagagggagaacgaagggtaattgtggataatgtggaagccattgtagctgagctaaagagaaattgggagagtgaaagctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="+" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="91177" stop="92069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91477" g_stop="91776" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="+" ref_id="SGN-E281578" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>300</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91477" e_stop="91776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTACTCGACGAGTTTCTGGGCATCAGCGAGGGTTAAGTTGGAGATTTCATCTCCGAGCTGGACTACCTTCTCCGGTGCTTCGACGGCGGCGAGAGGGCGGACGAGAGTTGCCCGGCGGTGGTACAGTTTGGGAGTGCGAATGGGAAGTTCTAGGGTTTTGGTGGGGAAGGAAATTGAAGCGTGCGTGGAGCTTGCGGTTGCTGGAGAAATAGGAGAGGGAGAACGAAGGGTAATTGTGGATAATGTGGAAGCCATTGTAGCTGAGCTAAAGAGAAATTGGGAGAGTGAAAGAGGGAGA</genome_strand>
        <mrna_strand>AGGTACTCGACGAGTTTCTGGGCATCAGCGAGGGTTAAGTTGGAGATTTCATCTCCGAGCTGGACTACCTTCTCCGGTGCTTCGACGGCGGCGAGAGGGCGGACGAGAGTTGCCCGGCGGTGGTACAGTTTGGGAGTGCGAATGGGAAGTTCTAGGGTTTTGGTGGGGAAGGAAATTGAAGCGTGCGTGGAGCTTGCGGTTGCTGGAGAAATAGGAGAGGGAGAACGAAGGGTAATTGTGGATAATGTGGAAGCCATTGTAGCTGAGCTAAAGAGAAATTGGGAGAGTGAAAGCTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E202811" ref_strand="+" ref_description="SGN-E202811 [cLEB-1-M19]">
      <seq>gcacgagctttcactctcccaatttctctttagctcagctacaatggcttccacattatccacaattacccttcgttctccctctcctatttctccagcaaccgcaagctccacgcacgcttcaatttccttccccaccaaaaccctagaacttcccattcgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="92069" stop="91313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91776" g_stop="91613" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E202811" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>164</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91776" e_stop="91613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCCTCTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCA</genome_strand>
        <mrna_strand>GCACGAGCTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E372192" ref_strand="+" ref_description="SGN-E372192 [TUS-30-P6](-)">
      <seq>ttttcggtgagacgcggagacttgaacacgttgattctgcaaggaagtcagcaaggcatgcagttgctgcaatcatggaaccagagaaaacaacagagtttgactacttgccattcttctactccagagtcttcacactctcttggcagttctatggtgacagtactggtgatgtagtccattttggggatttcttggggaatagctttggtgcatattgggtgaacaaaggtcacgtcgttgggtcttttctagagggtggaaccaaagaggagtatgaggctattgcaaagatcacaaggctcaaaccagcaattgaggacttgtctgatctcgaaacgcagggtttaggatttgcattgacattgagtgataaaccagagccatcggaggctgttgttgtcagcagtagttcgggttccacttttgtaacagagaaacctttacatgtttggcatgcaacagctggagtcattttggctgcttcaattgctgcctttgcatactggtatggtaggaggcgtagaaggtggtaaatgtcttgttccccacggaagatttttacacgtcgattcctgctgtgttgtatgattttagcttagagaatttgaaatacttggcctgtaaatggcttcaattttacaaacatgtattctgtctttacagtatatatcaatacccattatcctcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="94282" stop="79502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93982" g_stop="93275" g_length="708"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="708" r_length="708" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E372192" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93982" e_stop="93275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCGGTGAGACGCGGAGACTTGAACACGTTGATTCTGCAAGGAAGTCAGCAAGGCATGCAGTTGCTGCAATCATGGAACCAGAGAAAACAACAGAGTTTGACTACTTGCCATTCTTCTACTCCAGAGTCTTCACACTCTCTTGGCAGTTCTATGGTGACAGTACTGGTGATGTAGTCCATTTTGGGGATTTCTTGGGGAATAGCTTTGGTGCATATTGGGTGAACAAAGGTCACGTCGTTGGGTCTTTTCTAGAGGGTGGAACCAAAGAGGAGTATGAGGCTATTGCAAAGATCACAAGGCTCAAACCAGCAATTGAGGACTTGTCTGATCTCGAAACGCAGGGTTTAGGATTTGCATTGACATTGAGTGATAAACCAGAGCCATCGGAGGCTGTTGTTGTCAGCAGTAGTTCGGGTTCCACTTTTGTAACAGAGAAACCTTTACATGTTTGGCATGCAACAGCTGGAGTCATTTTGGCTGCTTCAATTGCTGCCTTTGCATACTGGTATGGTAGGAGGCGTAGAAGGTGGTAAATGTCTTGTTCCCCACGGAAGATTTTTACACGTCGATTCCTGCTGTGTTGTATGATTTTAGCTTAGAGAATTTGAAATACTTGGCCTGTAAATGGCTTCAATTTTACAAACATGTATTCTGTCTTTACAGTATATATCAATACACATTATCCTCAATCCCTCAGCATGCTCT</genome_strand>
        <mrna_strand>TTTTCGGTGAGACGCGGAGACTTGAACACGTTGATTCTGCAAGGAAGTCAGCAAGGCATGCAGTTGCTGCAATCATGGAACCAGAGAAAACAACAGAGTTTGACTACTTGCCATTCTTCTACTCCAGAGTCTTCACACTCTCTTGGCAGTTCTATGGTGACAGTACTGGTGATGTAGTCCATTTTGGGGATTTCTTGGGGAATAGCTTTGGTGCATATTGGGTGAACAAAGGTCACGTCGTTGGGTCTTTTCTAGAGGGTGGAACCAAAGAGGAGTATGAGGCTATTGCAAAGATCACAAGGCTCAAACCAGCAATTGAGGACTTGTCTGATCTCGAAACGCAGGGTTTAGGATTTGCATTGACATTGAGTGATAAACCAGAGCCATCGGAGGCTGTTGTTGTCAGCAGTAGTTCGGGTTCCACTTTTGTAACAGAGAAACCTTTACATGTTTGGCATGCAACAGCTGGAGTCATTTTGGCTGCTTCAATTGCTGCCTTTGCATACTGGTATGGTAGGAGGCGTAGAAGGTGGTAAATGTCTTGTTCCCCACGGAAGATTTTTACACGTCGATTCCTGCTGTGTTGTATGATTTTAGCTTAGAGAATTTGAAATACTTGGCCTGTAAATGGCTTCAATTTTACAAACATGTATTCTGTCTTTACAGTATATATCAATACCCATTATCCTCAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E705168" ref_strand="+" ref_description="SGN-E705168 [FA26BD11]">
      <seq>cgttaagtttgtgaaaggcacggtcttgacatcatttgatttcgactccaatgataagatgactgcggtgaatttgagagatggaaccaagctacctgctgacatggtcatcgtaggcattggaattcgaccaaataccagcctctttgaagggcaacttactcttgagaaaggagggataaaagtcaatggccaaatgcagtcaagcaacagctcagtctatgctgttggggatgttgcaacttttcctgtcaaaattttcggtgagacgcggagacttgaacacgttgattctgcaaggaagtcagcaaggcatgcagttgctgcaatcatggaaccagagaaaacaacagagtttgactacttgccattcttctactccagagtcttcacactctcttggcagttctatggtgacagtactggtgatgtagtccattttggggatttcttggggaatagctttggtgcatattgggtgaacaaaggtcacgtcgttgggtcttttctagagggtggaaccaaagaggagtatgaggctattgcaaagatcacaaggctcaaaccagcaattgaggacttgtctgatctcgaaacgcagggtttaggatttgcattgacattgagtgataaaccagagccatcggaggctgttgttgtcagcagtagttcgggttccacttttgtaacagagaaacctttacatgtttggcatgcaacagctggagtcattttggctgcttcaattgctgcctttgcatactggtatggtangaagcgtanaaagtggtaaatgtcttgttccccacggaagatttttacacgtcgattcctgctgtgttgtatgattttagcttagagaaatttgaatacttggcctggtaatggcttcaattttacaacatgtattctgtctttacagtatatatcaatacacattatcctcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="94894" stop="92991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94595" g_stop="94538" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94537" i_stop="94182" i_length="356">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94181" g_stop="93281" g_length="901"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="958" r_length="900" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E705168" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>959</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94595" e_stop="94538"/>
          <exon e_start="94181" e_stop="93281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTAAGTTTGTGAAAGGCACGGTCTTGACATCATTTGATTTCGACTCCAATGATAAGGTAAAGCCTGTTGCTTGCTTCACTTTGGTGGTGTTTTCTTTGAAAGCTGTTCGCAGACGTGTTTGTTTGAACTGCTTTTTCATTTACCTCTTCTTGAACATTTCCAACCTCAATTTCACTAGGTACTTTGTTAATGCAAACTCAGTTTATTAGTTTCTGAAAACAGCTTCTATTTGTTATCCTTTTTTATTTGAATAAGAAAAGGTTAACTTTTACTGAAAGAGTGAATATTCTTGAACTCCGTTTAACAAGTCACTTTGTTAAGCTGGAACTAACATTAATCATCATTTCACAATTTTATATATCACTGAAGTTATAATGGACATGATGCTTGAATGCGGGGACCTTTTATGTAGATGACTGCGGTGAATTTGAGAGATGGAACCAAGCTACCTGCTGACATGGTCATCGTAGGCATTGGAATTCGACCAAATACCAGCCTCTTTGAAGGGCAACTTACTCTTGAGAAAGGAGGGATAAAAGTCAATGGCCAAATGCAGTCAAGCAACAGCTCAGTCTATGCTGTTGGGGATGTTGCAACTTTTCCTGTCAAAATTTTCGGTGAGACGCGGAGACTTGAACACGTTGATTCTGCAAGGAAGTCAGCAAGGCATGCAGTTGCTGCAATCATGGAACCAGAGAAAACAACAGAGTTTGACTACTTGCCATTCTTCTACTCCAGAGTCTTCACACTCTCTTGGCAGTTCTATGGTGACAGTACTGGTGATGTAGTCCATTTTGGGGATTTCTTGGGGAATAGCTTTGGTGCATATTGGGTGAACAAAGGTCACGTCGTTGGGTCTTTTCTAGAGGGTGGAACCAAAGAGGAGTATGAGGCTATTGCAAAGATCACAAGGCTCAAACCAGCAATTGAGGACTTGTCTGATCTCGAAACGCAGGGTTTAGGATTTGCATTGACATTGAGTGATAAACCAGAGCCATCGGAGGCTGTTGTTGTCAGCAGTAGTTCGGGTTCCACTTTTGTAACAGAGAAACCTTTACATGTTTGGCATGCAACAGCTGGAGTCATTTTGGCTGCTTCAATTGCTGCCTTTGCATACTGGTATGGTAGGAGGCGTAGAAGGTGGTAAATGTCTTGTTCCCCACGGAAGATTTTTACACGTCGATTCCTGCTGTGTTGTATGATTTTAGCTTAGAGAATTTGAAATACTTGGCCTGTAAATGGCTTCAATTTTACAAACATGTATTCTGTCTTTACAGTATATATCAATACACATTATCCTCAATCCCTCAGCA</genome_strand>
        <mrna_strand>CGTTAAGTTTGTGAAAGGCACGGTCTTGACATCATTTGATTTCGACTCCAATGATAAG....................................................................................................................................................................................................................................................................................................................................................................ATGACTGCGGTGAATTTGAGAGATGGAACCAAGCTACCTGCTGACATGGTCATCGTAGGCATTGGAATTCGACCAAATACCAGCCTCTTTGAAGGGCAACTTACTCTTGAGAAAGGAGGGATAAAAGTCAATGGCCAAATGCAGTCAAGCAACAGCTCAGTCTATGCTGTTGGGGATGTTGCAACTTTTCCTGTCAAAATTTTCGGTGAGACGCGGAGACTTGAACACGTTGATTCTGCAAGGAAGTCAGCAAGGCATGCAGTTGCTGCAATCATGGAACCAGAGAAAACAACAGAGTTTGACTACTTGCCATTCTTCTACTCCAGAGTCTTCACACTCTCTTGGCAGTTCTATGGTGACAGTACTGGTGATGTAGTCCATTTTGGGGATTTCTTGGGGAATAGCTTTGGTGCATATTGGGTGAACAAAGGTCACGTCGTTGGGTCTTTTCTAGAGGGTGGAACCAAAGAGGAGTATGAGGCTATTGCAAAGATCACAAGGCTCAAACCAGCAATTGAGGACTTGTCTGATCTCGAAACGCAGGGTTTAGGATTTGCATTGACATTGAGTGATAAACCAGAGCCATCGGAGGCTGTTGTTGTCAGCAGTAGTTCGGGTTCCACTTTTGTAACAGAGAAACCTTTACATGTTTGGCATGCAACAGCTGGAGTCATTTTGGCTGCTTCAATTGCTGCCTTTGCATACTGGTATGGTANGAAGCGTANAAAGTGGTAAATGTCTTGTTCCCCACGGAAGATTTTTACACGTCGATTCCTGCTGTGTTGTATGATTTTAGCTTAGAGAAATTTGAATACTTGGCCTGGTAATGGCTTCAATTTTAC-AACATGTATTCTGTCTTTACAGTATATATCAATACACATTATCCTCAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E716153" ref_strand="+" ref_description="SGN-E716153 [FB16BA09]">
      <seq>caaaggtcacgtcgttgggtcttttctagagggtggaaccaaagaggagtatgaggctattgcaaagatcacaaggctcaaaccagcaattgaggacttgtctgatctcgaaacgcagggtttaggatttgcattgacattgagtgataaaccagagccatcggaggctgttgttgtcagcagtagttcgggttccacttttgtaacagagaaacctttacatgtttggcatgcaacagctggagtcattttggctgcttcaattgctgcctttgcatactggtatggtaggaggcgtagaaggtggtaaatgtcttgttccccacggaagatttttacacgtcgattcctgctgtgttgtatgattttagcttagagaatttgaaatacttggcctgtaaatggcttcaattttacaaacatgtattctgtctttacagtatatatcaatacacattatcctcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="94056" stop="92991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93756" g_stop="93281" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E716153" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93756" e_stop="93281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGGTCACGTCGTTGGGTCTTTTCTAGAGGGTGGAACCAAAGAGGAGTATGAGGCTATTGCAAAGATCACAAGGCTCAAACCAGCAATTGAGGACTTGTCTGATCTCGAAACGCAGGGTTTAGGATTTGCATTGACATTGAGTGATAAACCAGAGCCATCGGAGGCTGTTGTTGTCAGCAGTAGTTCGGGTTCCACTTTTGTAACAGAGAAACCTTTACATGTTTGGCATGCAACAGCTGGAGTCATTTTGGCTGCTTCAATTGCTGCCTTTGCATACTGGTATGGTAGGAGGCGTAGAAGGTGGTAAATGTCTTGTTCCCCACGGAAGATTTTTACACGTCGATTCCTGCTGTGTTGTATGATTTTAGCTTAGAGAATTTGAAATACTTGGCCTGTAAATGGCTTCAATTTTACAAACATGTATTCTGTCTTTACAGTATATATCAATACACATTATCCTCAATCCCTCAGCA</genome_strand>
        <mrna_strand>CAAAGGTCACGTCGTTGGGTCTTTTCTAGAGGGTGGAACCAAAGAGGAGTATGAGGCTATTGCAAAGATCACAAGGCTCAAACCAGCAATTGAGGACTTGTCTGATCTCGAAACGCAGGGTTTAGGATTTGCATTGACATTGAGTGATAAACCAGAGCCATCGGAGGCTGTTGTTGTCAGCAGTAGTTCGGGTTCCACTTTTGTAACAGAGAAACCTTTACATGTTTGGCATGCAACAGCTGGAGTCATTTTGGCTGCTTCAATTGCTGCCTTTGCATACTGGTATGGTAGGAGGCGTAGAAGGTGGTAAATGTCTTGTTCCCCACGGAAGATTTTTACACGTCGATTCCTGCTGTGTTGTATGATTTTAGCTTAGAGAATTTGAAATACTTGGCCTGTAAATGGCTTCAATTTTACAAACATGTATTCTGTCTTTACAGTATATATCAATACACATTATCCTCAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E372193" ref_strand="+" ref_description="SGN-E372193 [TUS-30-P6]">
      <seq>ttcgaccaaataccagcctctttgaagggcaacttactcttgagaaaggagggataaaagtcaatggccaaatgcagtcaagcaacagctcagtctatgctgttggggatgttgcaacttttcctgtcaaaattttcggtgagacgcggagacttgaacacgttgattctgcaaggaagtcagcaaggcatgcagttgctgcaatcatggaaccagagaaaacaacagagtttgactacttgccattcttctactccagagtcttcacactctcttggcagttctatggtgacagtactggtgatgtagtccattttggggatttcttggggaatagctttggtgcatattgggtgaacaaaggtcacgtcgttgggtcttttctagagggtggaaccaaagaggagtatgaggctattgcaaagatcacaaggctcaaaccagcaattgaggacttgtctgatctcgaaacgcagggtttaggatttgcattgacattgagtgataaaccagagccatcggaggctgttgttgtcagcagtagttcgggttccacttttgtaacagagaaacctttacatgtttggcatgcaacagctggagtcattttggctgcttcaattgctgcctttgcatactggtatggtaggaggcgtagaaagtggtaaatgtcttgttcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="94414" stop="93133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94114" g_stop="93433" g_length="682"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="682" r_length="682" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E372193" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94114" e_stop="93433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGACCAAATACCAGCCTCTTTGAAGGGCAACTTACTCTTGAGAAAGGAGGGATAAAAGTCAATGGCCAAATGCAGTCAAGCAACAGCTCAGTCTATGCTGTTGGGGATGTTGCAACTTTTCCTGTCAAAATTTTCGGTGAGACGCGGAGACTTGAACACGTTGATTCTGCAAGGAAGTCAGCAAGGCATGCAGTTGCTGCAATCATGGAACCAGAGAAAACAACAGAGTTTGACTACTTGCCATTCTTCTACTCCAGAGTCTTCACACTCTCTTGGCAGTTCTATGGTGACAGTACTGGTGATGTAGTCCATTTTGGGGATTTCTTGGGGAATAGCTTTGGTGCATATTGGGTGAACAAAGGTCACGTCGTTGGGTCTTTTCTAGAGGGTGGAACCAAAGAGGAGTATGAGGCTATTGCAAAGATCACAAGGCTCAAACCAGCAATTGAGGACTTGTCTGATCTCGAAACGCAGGGTTTAGGATTTGCATTGACATTGAGTGATAAACCAGAGCCATCGGAGGCTGTTGTTGTCAGCAGTAGTTCGGGTTCCACTTTTGTAACAGAGAAACCTTTACATGTTTGGCATGCAACAGCTGGAGTCATTTTGGCTGCTTCAATTGCTGCCTTTGCATACTGGTATGGTAGGAGGCGTAGAAGGTGGTAAATGTCTTGTTCCCC</genome_strand>
        <mrna_strand>TTCGACCAAATACCAGCCTCTTTGAAGGGCAACTTACTCTTGAGAAAGGAGGGATAAAAGTCAATGGCCAAATGCAGTCAAGCAACAGCTCAGTCTATGCTGTTGGGGATGTTGCAACTTTTCCTGTCAAAATTTTCGGTGAGACGCGGAGACTTGAACACGTTGATTCTGCAAGGAAGTCAGCAAGGCATGCAGTTGCTGCAATCATGGAACCAGAGAAAACAACAGAGTTTGACTACTTGCCATTCTTCTACTCCAGAGTCTTCACACTCTCTTGGCAGTTCTATGGTGACAGTACTGGTGATGTAGTCCATTTTGGGGATTTCTTGGGGAATAGCTTTGGTGCATATTGGGTGAACAAAGGTCACGTCGTTGGGTCTTTTCTAGAGGGTGGAACCAAAGAGGAGTATGAGGCTATTGCAAAGATCACAAGGCTCAAACCAGCAATTGAGGACTTGTCTGATCTCGAAACGCAGGGTTTAGGATTTGCATTGACATTGAGTGATAAACCAGAGCCATCGGAGGCTGTTGTTGTCAGCAGTAGTTCGGGTTCCACTTTTGTAACAGAGAAACCTTTACATGTTTGGCATGCAACAGCTGGAGTCATTTTGGCTGCTTCAATTGCTGCCTTTGCATACTGGTATGGTAGGAGGCGTAGAAAGTGGTAAATGTCTTGTTCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E404869" ref_strand="+" ref_description="SGN-E404869 [PPC-15-H19]">
      <seq>agcaacttttcctgttaaaattttcagtgaaacacggagacttgaacacgttgattctgcaaagaagtcagcaaagcatgcagttgctgcaatcatggaaccagagaaaacaacggagtttgactacttgccattcttctactccagagtcttcacactctcttggcagttctatggtgacagtactggtgatgtagtccattttggggatttcttggggaatagctttggtgcatactgggtgaacaaaggtcacgtcgttgggtcttttctagagggtggaaccaaagaggagtatgcggctattgcaaagatcacaaagctcaaaccatcaattgaggacttgtctgatctcgaaacacagggtttaggatttgcattgacattgagtgatcaaccagagccatcngaagctgttgttgtcggcagtggttcaggttccactcttgcaacagagaaacctttacatgtttggcatgcaacagctggagtcattttggctgcttcaattgctgcctttgcatactggtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="94301" stop="93170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94002" g_stop="93470" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E404869" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E404869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94002" e_stop="93470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAACTTTTCCTGTCAAAATTTTCGGTGAGACGCGGAGACTTGAACACGTTGATTCTGCAAGGAAGTCAGCAAGGCATGCAGTTGCTGCAATCATGGAACCAGAGAAAACAACAGAGTTTGACTACTTGCCATTCTTCTACTCCAGAGTCTTCACACTCTCTTGGCAGTTCTATGGTGACAGTACTGGTGATGTAGTCCATTTTGGGGATTTCTTGGGGAATAGCTTTGGTGCATATTGGGTGAACAAAGGTCACGTCGTTGGGTCTTTTCTAGAGGGTGGAACCAAAGAGGAGTATGAGGCTATTGCAAAGATCACAAGGCTCAAACCAGCAATTGAGGACTTGTCTGATCTCGAAACGCAGGGTTTAGGATTTGCATTGACATTGAGTGATAAACCAGAGCCATCGGAGGCTGTTGTTGTCAGCAGTAGTTCGGGTTCCACTTTTGTAACAGAGAAACCTTTACATGTTTGGCATGCAACAGCTGGAGTCATTTTGGCTGCTTCAATTGCTGCCTTTGCATACTGGTATG</genome_strand>
        <mrna_strand>AGCAACTTTTCCTGTTAAAATTTTCAGTGAAACACGGAGACTTGAACACGTTGATTCTGCAAAGAAGTCAGCAAAGCATGCAGTTGCTGCAATCATGGAACCAGAGAAAACAACGGAGTTTGACTACTTGCCATTCTTCTACTCCAGAGTCTTCACACTCTCTTGGCAGTTCTATGGTGACAGTACTGGTGATGTAGTCCATTTTGGGGATTTCTTGGGGAATAGCTTTGGTGCATACTGGGTGAACAAAGGTCACGTCGTTGGGTCTTTTCTAGAGGGTGGAACCAAAGAGGAGTATGCGGCTATTGCAAAGATCACAAAGCTCAAACCATCAATTGAGGACTTGTCTGATCTCGAAACACAGGGTTTAGGATTTGCATTGACATTGAGTGATCAACCAGAGCCATCNGAAGCTGTTGTTGTCGGCAGTGGTTCAGGTTCCACTCTTGCAACAGAGAAACCTTTACATGTTTGGCATGCAACAGCTGGAGTCATTTTGGCTGCTTCAATTGCTGCCTTTGCATACTGGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E289166" ref_strand="+" ref_description="SGN-E289166 [cLES-18-B10]">
      <seq>ttcgaccaaataccagcctctttgaagggcaacttactcttgagaaaggagggataaaagtcaatggccaaatgcagtcaagcaacagctcagtctatgctgttggggatgttgcaacttttcctgtcaaaattttcggtgagacgcggagacttgaacacgttgattctgcaaggaagtcagcaaggcatgcagttgctgcaatcatggaaccagagaaaacaacagagtttgactacttgccattcttctactccagagtcttcacactctcttggcagttctatggtgacagtactggtgatgtagtccattttggggatttcttggggaatagctttggtgcatattgggtgaacaaaggtcacgtcgttgggtcttttctagagggtggaaccaaagaggagtatgaggctattgcaaagatcacaaggctcaaaccagcaattgaggacttgtctgatctcgaaacgcagggtttaggatttgcattgacattgagtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="94414" stop="93309"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94114" g_stop="93609" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="506" r_length="506" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E289166" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94114" e_stop="93609"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGACCAAATACCAGCCTCTTTGAAGGGCAACTTACTCTTGAGAAAGGAGGGATAAAAGTCAATGGCCAAATGCAGTCAAGCAACAGCTCAGTCTATGCTGTTGGGGATGTTGCAACTTTTCCTGTCAAAATTTTCGGTGAGACGCGGAGACTTGAACACGTTGATTCTGCAAGGAAGTCAGCAAGGCATGCAGTTGCTGCAATCATGGAACCAGAGAAAACAACAGAGTTTGACTACTTGCCATTCTTCTACTCCAGAGTCTTCACACTCTCTTGGCAGTTCTATGGTGACAGTACTGGTGATGTAGTCCATTTTGGGGATTTCTTGGGGAATAGCTTTGGTGCATATTGGGTGAACAAAGGTCACGTCGTTGGGTCTTTTCTAGAGGGTGGAACCAAAGAGGAGTATGAGGCTATTGCAAAGATCACAAGGCTCAAACCAGCAATTGAGGACTTGTCTGATCTCGAAACGCAGGGTTTAGGATTTGCATTGACATTGAGTGAT</genome_strand>
        <mrna_strand>TTCGACCAAATACCAGCCTCTTTGAAGGGCAACTTACTCTTGAGAAAGGAGGGATAAAAGTCAATGGCCAAATGCAGTCAAGCAACAGCTCAGTCTATGCTGTTGGGGATGTTGCAACTTTTCCTGTCAAAATTTTCGGTGAGACGCGGAGACTTGAACACGTTGATTCTGCAAGGAAGTCAGCAAGGCATGCAGTTGCTGCAATCATGGAACCAGAGAAAACAACAGAGTTTGACTACTTGCCATTCTTCTACTCCAGAGTCTTCACACTCTCTTGGCAGTTCTATGGTGACAGTACTGGTGATGTAGTCCATTTTGGGGATTTCTTGGGGAATAGCTTTGGTGCATATTGGGTGAACAAAGGTCACGTCGTTGGGTCTTTTCTAGAGGGTGGAACCAAAGAGGAGTATGAGGCTATTGCAAAGATCACAAGGCTCAAACCAGCAATTGAGGACTTGTCTGATCTCGAAACGCAGGGTTTAGGATTTGCATTGACATTGAGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E403098" ref_strand="+" ref_description="SGN-E403098 [PPC-9-J19]">
      <seq>ggactttttatgtagatgactgcagtgaatctgagagatggaaccaaactacctgccgacatggtcatagtaggcattggaattagaccaaataccagcctctttgaagggcagcttactcttgagaaaggagggataaaagtcaatggccaaatgcagtcaagcaacagctcagtctatgctgttggggatgttgcaacttttcctgttaaaattttcagtgaaacacggagacttgaacacgttgattctgcaaggaagtcagcaaggcatgcagttgctgcaatcatggaaccagagaaaacaacggagtttgactacttgccattcttctactccagagtcttcacactctcttggcagttctatggtgacagtactggtgatgtagtccattttggggatttcttggggaatagctttggtgcatactgggtgaacaaaggtcacgtcgttgggtcttttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="94496" stop="93430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94196" g_stop="93730" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="467" r_length="467" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E403098" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E403098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94196" e_stop="93730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACCTTTTATGTAGATGACTGCGGTGAATTTGAGAGATGGAACCAAGCTACCTGCTGACATGGTCATCGTAGGCATTGGAATTCGACCAAATACCAGCCTCTTTGAAGGGCAACTTACTCTTGAGAAAGGAGGGATAAAAGTCAATGGCCAAATGCAGTCAAGCAACAGCTCAGTCTATGCTGTTGGGGATGTTGCAACTTTTCCTGTCAAAATTTTCGGTGAGACGCGGAGACTTGAACACGTTGATTCTGCAAGGAAGTCAGCAAGGCATGCAGTTGCTGCAATCATGGAACCAGAGAAAACAACAGAGTTTGACTACTTGCCATTCTTCTACTCCAGAGTCTTCACACTCTCTTGGCAGTTCTATGGTGACAGTACTGGTGATGTAGTCCATTTTGGGGATTTCTTGGGGAATAGCTTTGGTGCATATTGGGTGAACAAAGGTCACGTCGTTGGGTCTTTTCT</genome_strand>
        <mrna_strand>GGACTTTTTATGTAGATGACTGCAGTGAATCTGAGAGATGGAACCAAACTACCTGCCGACATGGTCATAGTAGGCATTGGAATTAGACCAAATACCAGCCTCTTTGAAGGGCAGCTTACTCTTGAGAAAGGAGGGATAAAAGTCAATGGCCAAATGCAGTCAAGCAACAGCTCAGTCTATGCTGTTGGGGATGTTGCAACTTTTCCTGTTAAAATTTTCAGTGAAACACGGAGACTTGAACACGTTGATTCTGCAAGGAAGTCAGCAAGGCATGCAGTTGCTGCAATCATGGAACCAGAGAAAACAACGGAGTTTGACTACTTGCCATTCTTCTACTCCAGAGTCTTCACACTCTCTTGGCAGTTCTATGGTGACAGTACTGGTGATGTAGTCCATTTTGGGGATTTCTTGGGGAATAGCTTTGGTGCATACTGGGTGAACAAAGGTCACGTCGTTGGGTCTTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E597520" ref_strand="+" ref_description="SGN-E597520 [67389]">
      <seq>ctcgggctttgaagcttgaagagtttggagtgagtggctcagatgctgagagtgtatgttatttacgagatttggctgatgcaaacaggctggttaatgtgatgcaatccagcggtggtggcaatgctgttgtaattggtggtggctacataggaatggaatgtgctgcttctttggtgatcggcaaaatcaatgtcaccatggtctttccagaagcacactgcaatgactgcagtgaatctgagagatggaaccaaactaccagccgacatggtcatagtaggcattggaattcgaccaaataccagcctctttgaagggcagcttactcttgagaaaggagggataaaagtcaatggccaaatgcagtcaagcaacagctcagtctatgctgttggggatgttgcaacttttcctgttaaaattttcggtgaaacacggagacttgaacacgttgattctgcaaggaagtcagcaaggccatgcagttgctgcaatcatggaaccagagaaaacaacggagtttgactacttgccattcttctactccagagtcttcacactctcttggccagttctatggtgacagtactggttgatgtagtccattttggggatttcttggggcaatagctttgggtgcatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0190P16-RQ8ln/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0190P16.1" temp_strand="-" temp_description="C02HBa0190P16.1  AC215415.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0190P16 sequenced_by:kribb upload_account_name:korea">
        <position start="95452" stop="93466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95452" g_stop="95245" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="225" r_length="208" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95244" i_stop="94182" i_length="1063">
            <donor d_prob="0.804" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94181" g_stop="93764" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="648" r_length="423" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0190P16.1" gen_strand="-" ref_id="SGN-E597520" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0190P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E597520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95452" e_stop="95245"/>
          <exon e_start="94181" e_stop="93764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAGTTTGGAGTGAGTGGCTCAGATGCTGAGAGTGTATGTTATTTACGGGATTTGGCTGATGCAAACAGGCTGGTTAATGTGATGCAATCTAGCGGTGGTGGCAATGCTGTTGTAATTGGTGGTGGCTACATAGGAATGGAATGTGCTGCTTCTTTGGTGATCGGCAAAATAAATGTCACCATGGTCTTTCCAGAAGCACACTGTAGTAAGTATTCTTTTGTGAAGATGGAAAGCTTTCGTTTCTTTTTTTAACTCGAGTTTCTTTAGGTTGCTTGTAAATTATATTCTTTTGTGAAGTTGGAGAACTTTCTTTTCTGTTTCTTACTCGAGTTTCTTTAGATTGCTTGTAATATATCAGAAGTAAGAACTGTGTTTTCTCCTCTCTAGAGAATTATGTATTAGTATAACTTTAGTAGTTGCGTTTTATCCAGAAAATACAAACCACAATCTGAAATCTAGTACATGCCTTACTCTCCAAACCATGCTATTAGTACAGAAAACAGTGATCTCAGTAATCAACAAATGCTATAAAGATATGAAAATTGATCAGAATGTGGGACTTCTGCCCTCATATTTCCTCAAAATATGAAATCATCGATTGAAAGCTTATGTATGAGAAAAACTGATTTGTTTCTTAATTCTCAAAACCCAAAGTCCAAGAGTTACTTACAGATATAAACCATAAATGTGCAACCATTGCTGTTCTATCTTAAGTTCATCAGTAAACAAACTGTTGTTTTTTCTAATGATTTTATAAAGCATTTAATTTTCTTCCCTTTTCTTTTGTTGTTAGTGGCCCGCCTATTTACTCCTAAAATTGCAAGTTTCTACGAAGAATTTTACCGGTCAAAAGGAGTTAAGTTTGTGAAAGGCACGGTCTTGACATCATTTGATTTCGACTCCAATGATAAGGTAAAGCCTGTTGCTTGCTTCACTTTGGTGGTGTTTTCTTTGAAAGCTGTTCGCAGACGTGTTTGTTTGAACTGCTTTTTCATTTACCTCTTCTTGAACATTTCCAACCTCAATTTCACTAGGTACTTTGTTAATGCAAACTCAGTTTATTAGTTTCTGAAAACAGCTTCTATTTGTTATCCTTTTTTATTTGAATAAGAAAAGGTTAACTTTTACTGAAAGAGTGAATATTCTTGAACTCCGTTTAACAAGTCACTTTGTTAAGCTGGAACTAACATTAATCATCATTTCACAATTTTATATATCACTGAAGTTATAATGGACATGATGCTTGAATGCGGGGACCTTTTATGTAGATGACTGCGGTGAATTTGAGAGATGGAACCAAGCTACCTGCTGACATGGTCATCGTAGGCATTGGAATTCGACCAAATACCAGCCTCTTTGAAGGGCAACTTACTCTTGAGAAAGGAGGGATAAAAGTCAATGGCCAAATGCAGTCAAGCAACAGCTCAGTCTATGCTGTTGGGGATGTTGCAACTTTTCCTGTCAAAATTTTCGGTGAGACGCGGAGACTTGAACACGTTGATTCTGCAAGGAAGTCAGCAAGG-CATGCAGTTGCTGCAATCATGGAACCAGAGAAAACAACAGAGTTTGACTACTTGCCATTCTTCTACTCCAGAGTCTTCACACTCTCTTGG-CAGTTCTATGGTGACAGTACTGG-TGATGTAGTCCATTTTGGGGATTTCTTGGGG-AATAGCTTT-GGTGCATATT</genome_strand>
        <mrna_strand>GAAGAGTTTGGAGTGAGTGGCTCAGATGCTGAGAGTGTATGTTATTTACGAGATTTGGCTGATGCAAACAGGCTGGTTAATGTGATGCAATCCAGCGGTGGTGGCAATGCTGTTGTAATTGGTGGTGGCTACATAGGAATGGAATGTGCTGCTTCTTTGGTGATCGGCAAAATCAATGTCACCATGGTCTTTCCAGAAGCACACTGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACTGCAGTGAATCTGAGAGATGGAACCAAACTACCAGCCGACATGGTCATAGTAGGCATTGGAATTCGACCAAATACCAGCCTCTTTGAAGGGCAGCTTACTCTTGAGAAAGGAGGGATAAAAGTCAATGGCCAAATGCAGTCAAGCAACAGCTCAGTCTATGCTGTTGGGGATGTTGCAACTTTTCCTGTTAAAATTTTCGGTGAAACACGGAGACTTGAACACGTTGATTCTGCAAGGAAGTCAGCAAGGCCATGCAGTTGCTGCAATCATGGAACCAGAGAAAACAACGGAGTTTGACTACTTGCCATTCTTCTACTCCAGAGTCTTCACACTCTCTTGGCCAGTTCTATGGTGACAGTACTGGTTGATGTAGTCCATTTTGGGGATTTCTTGGGGCAATAGCTTTGGGTGCATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>393</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="23002" PGL_stop="19019"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23002" e_stop="22575"/>
            <exon e_start="22391" e_stop="22269"/>
            <exon e_start="21961" e_stop="21790"/>
            <exon e_start="21065" e_stop="21028"/>
            <exon e_start="20615" e_stop="20417"/>
            <exon e_start="20234" e_stop="20082"/>
            <exon e_start="19881" e_stop="19747"/>
            <exon e_start="19290" e_stop="19019"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.964" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.928" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.886" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.908" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="23002" e_stop="22575" e_length="428"/>
          </exon>
          <intron i_serial="1" don_prob="0.964" acc_prob="0.997">
            <gDNA_intron_boundary i_start="22574" i_stop="22392" i_length="183"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="22391" e_stop="22269" e_length="123"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="22268" i_stop="21962" i_length="307"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="21961" e_stop="21790" e_length="172"/>
          </exon>
          <intron i_serial="3" don_prob="0.928" acc_prob="0.991">
            <gDNA_intron_boundary i_start="21789" i_stop="21066" i_length="724"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="21065" e_stop="21028" e_length="38"/>
          </exon>
          <intron i_serial="4" don_prob="0.968" acc_prob="0.886">
            <gDNA_intron_boundary i_start="21027" i_stop="20616" i_length="412"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="20615" e_stop="20417" e_length="199"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="20416" i_stop="20235" i_length="182"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="20234" e_stop="20082" e_length="153"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.908">
            <gDNA_intron_boundary i_start="20081" i_stop="19882" i_length="200"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="19881" e_stop="19747" e_length="135"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="19746" i_stop="19291" i_length="456"/>
          </intron>
          <exon e_serial="8" e_score="0.993">
            <gDNA_exon_boundary e_start="19290" e_stop="19019" e_length="272"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23002" stop="22575"/>
              <exon start="22391" stop="22269"/>
              <exon start="21961" stop="21812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22999" stop="22625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22998" stop="22575"/>
              <exon start="22391" stop="22269"/>
              <exon start="21961" stop="21790"/>
              <exon start="21065" stop="21028"/>
              <exon start="20615" stop="20588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22997" stop="22575"/>
              <exon start="22391" stop="22269"/>
              <exon start="21961" stop="21931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22996" stop="22575"/>
              <exon start="22391" stop="22269"/>
              <exon start="21961" stop="21930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291953" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22986" stop="22575"/>
              <exon start="22391" stop="22269"/>
              <exon start="21961" stop="21790"/>
              <exon start="21065" stop="21028"/>
              <exon start="20615" stop="20571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E621415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22986" stop="22575"/>
              <exon start="22391" stop="22269"/>
              <exon start="21961" stop="21790"/>
              <exon start="21065" stop="21050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22986" stop="22575"/>
              <exon start="22391" stop="22363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22986" stop="22737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22984" stop="22575"/>
              <exon start="22391" stop="22292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22979" stop="22575"/>
              <exon start="22391" stop="22269"/>
              <exon start="21961" stop="21831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22932" stop="22575"/>
              <exon start="22391" stop="22269"/>
              <exon start="21961" stop="21931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E621090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22888" stop="22575"/>
              <exon start="22391" stop="22269"/>
              <exon start="21961" stop="21834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22830" stop="22575"/>
              <exon start="22391" stop="22269"/>
              <exon start="21961" stop="21790"/>
              <exon start="21065" stop="21039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274855" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22830" stop="22575"/>
              <exon start="22391" stop="22269"/>
              <exon start="21961" stop="21872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22370" stop="22269"/>
              <exon start="21961" stop="21790"/>
              <exon start="21065" stop="21028"/>
              <exon start="20615" stop="20417"/>
              <exon start="20234" stop="20082"/>
              <exon start="19881" stop="19873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22327" stop="22269"/>
              <exon start="21961" stop="21790"/>
              <exon start="21065" stop="21028"/>
              <exon start="20615" stop="20417"/>
              <exon start="20234" stop="20139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21842" stop="21790"/>
              <exon start="21065" stop="21028"/>
              <exon start="20615" stop="20417"/>
              <exon start="20234" stop="20082"/>
              <exon start="19881" stop="19786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21835" stop="21790"/>
              <exon start="21065" stop="21028"/>
              <exon start="20615" stop="20417"/>
              <exon start="20234" stop="20082"/>
              <exon start="19881" stop="19747"/>
              <exon start="19290" stop="19152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21065" stop="21028"/>
              <exon start="20615" stop="20417"/>
              <exon start="20234" stop="20082"/>
              <exon start="19881" stop="19747"/>
              <exon start="19290" stop="19040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418572" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20160" stop="20082"/>
              <exon start="19881" stop="19747"/>
              <exon start="19290" stop="19019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278984" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCTCTTTGCTCTCACCAGTTGTCTTCTTAACAATGGCTGCATCTTCACACTCCCTAGCTTCTTCTGCTTGCTTCTCCACAACTCCGGCACGGAAATTTTCCGGCTCAGATCGATTTCAACTTGCTAAGTCTTTACTCTGCCGGAAAATACCTGGTTTCTCCGGCAGTGTGGTCTGCGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGGTGACCAGTCCAACTACGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAG : GCAGGATATGTTCACACTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAG : AGTGACTCTTGCTGATCAAACTACTTATGATGCAAAAGTTGTTGGATTTGACCAAGATAAAGATGTTGCTGTGTTGCATATTGATGCACCAAAAGACAAGTTGCGACCTATACCAATTGGCGTATCGGCAGACTTGCTCGTTGGTCAAAAAGTATTTGCTATTGGAAATCCA : TTTGGACTTGATCATACACTCACCACTGGTGTAATCAG : TGGGCTTAGGAGAGAAATCAATTCTGCGGCTACTGGCCGCCCAATCCAAGATGTTATTCAGACAGATGCAGCAATCAATCCTGGTAACAGTGGAGGGCCACTTCTAGATAGTTCTGGAAATCTTATTGGAATAAATACTGCTATATATTCTCCTTCCGGTGCATCATCAGGTGTTGGATTTTCAATTCCAGTTGATACT : GTCAGTGGCATTGTTGATCAGTTAGTGCAGTTTGGGAAAGTCACAAGGCCAATTTTGGGCATAAAGTTTGCACCTGATCAGTCCGTTGAGCAACTGGGAGTCACTGGAGTACTTGTCCTGGATGCTCCTCCAAATGGTCCTGCAGGCAAAGCA : GGTCTTCTACCTACTAAACGTGATTCCTACGGAAGACTTATTTTAGGTGATATAATCACATCTATAAATGGAAAGAAGGTCTCTAATGGCACCGACTTGTACAGAATTCTTGACCAATGCAAAGTTGGAGAAAAG : GTAATTGTGGAAGTGCTGCGTGGGGATCAGAAAGAGAAGATCCCTGTACTTCTGGAACCAAAGCCTGAAGAATCGTAGTTCCTCAAATGGATAGAGTATGTGTTGATATGCATTTCTTGGCGAACAAGCCCATATTATTAGTGCATCAATTGTTGAATGGTTGTGTATATACAAAACAACGCTTAAAACTAGGGTGCAAGCAATATAGTTGGGAGTCTAACACTGCTGCCTAAATATTTCTACTATATTAGATATCCTCAAATTGTATAATG</gDNA_template>
            <first_frame> S  S  L  L  S  P  V  V  F  L  T  M  A  A  S  S  H  S  L  A  S  S  A  C  F  S  T  T  P  A  R  K  F  S  G  S  D  R  F  Q  L  A  K  S  L  L  C  R  K  I  P  G  F  S  G  S  V  V  C  A  R  R  I  C  S  N  Y  A  S  S  G  D  Q  S  N  Y  G  K  K  L  M  D  S  I  F  V  A  C  T  S  V  A  L  S  F  S  L  Y  I  A  D  V  D  P  A  S  A  F  V  V  T  S  P  R  K  L  Q  T  D  E  L  A  T  V  R  L  F  Q  E  N  T  P  S  V  V  Y  I  T  N  L  A  S  R :   Q  D  M  F  T  L  D  V  F  E  V  P  Q  G  S  G  S  G  F  V  W  D  K  N  G  N  I  V  T  N  Y  H  V  I  R  G  A  S  D  L  R :   V  T  L  A  D  Q  T  T  Y  D  A  K  V  V  G  F  D  Q  D  K  D  V  A  V  L  H  I  D  A  P  K  D  K  L  R  P  I  P  I  G  V  S  A  D  L  L  V  G  Q  K  V  F  A  I  G  N  P  :  F  G  L  D  H  T  L  T  T  G  V  I  S :   G  L  R  R  E  I  N  S  A  A  T  G  R  P  I  Q  D  V  I  Q  T  D  A  A  I  N  P  G  N  S  G  G  P  L  L  D  S  S  G  N  L  I  G  I  N  T  A  I  Y  S  P  S  G  A  S  S  G  V  G  F  S  I  P  V  D  T  :  V  S  G  I  V  D  Q  L  V  Q  F  G  K  V  T  R  P  I  L  G  I  K  F  A  P  D  Q  S  V  E  Q  L  G  V  T  G  V  L  V  L  D  A  P  P  N  G  P  A  G  K  A  :  G  L  L  P  T  K  R  D  S  Y  G  R  L  I  L  G  D  I  I  T  S  I  N  G  K  K  V  S  N  G  T  D  L  Y  R  I  L  D  Q  C  K  V  G  E  K  :  V  I  V  E  V  L  R  G  D  Q  K  E  K  I  P  V  L  L  E  P  K  P  E  E  S  *  F  L  K  W  I  E  Y  V  L  I  C  I  S  W  R  T  S  P  Y  Y  *  C  I  N  C  *  M  V  V  Y  I  Q  N  N  A  *  N  *  G  A  S  N  I  V  G  S  L  T  L  L  P  K  Y  F  Y  Y  I  R  Y  P  Q  I  V  *   </first_frame>
            <second_frame>  P  L  C  S  H  Q  L  S  S  *  Q  W  L  H  L  H  T  P  *  L  L  L  L  A  S  P  Q  L  R  H  G  N  F  P  A  Q  I  D  F  N  L  L  S  L  Y  S  A  G  K  Y  L  V  S  P  A  V  W  S  A  L  G  V  F  A  L  T  M  P  L  P  V  T  S  P  T  T  G  R  S  L  W  I  V  F  L  W  H  A  L  P  L  P  C  L  S  L  S  I  *  Q  T  L  T  L  P  R  L  L  *  S  L  H  P  G  N  C  R  L  M  N  L  L  L  F  V  S  S  K  R  I  H  L  P  L  C  I  L  L  I  L  L  P   : G  R  I  C  S  H  W  M  Y  L  R  C  L  K  G  L  G  Q  A  S  S  G  I  K  M  E  I  L  L  L  I  I  M  *  F  E  V  L  L  I  S   : E  *  L  L  L  I  K  L  L  M  M  Q  K  L  L  D  L  T  K  I  K  M  L  L  C  C  I  L  M  H  Q  K  T  S  C  D  L  Y  Q  L  A  Y  R  Q  T  C  S  L  V  K  K  Y  L  L  L  E  I  H :   L  D  L  I  I  H  S  P  L  V  *  S   : V  G  L  G  E  K  S  I  L  R  L  L  A  A  Q  S  K  M  L  F  R  Q  M  Q  Q  S  I  L  V  T  V  E  G  H  F  *  I  V  L  E  I  L  L  E  *  I  L  L  Y  I  L  L  P  V  H  H  Q  V  L  D  F  Q  F  Q  L  I  L :   S  V  A  L  L  I  S  *  C  S  L  G  K  S  Q  G  Q  F  W  A  *  S  L  H  L  I  S  P  L  S  N  W  E  S  L  E  Y  L  S  W  M  L  L  Q  M  V  L  Q  A  K  Q :   V  F  Y  L  L  N  V  I  P  T  E  D  L  F  *  V  I  *  S  H  L  *  M  E  R  R  S  L  M  A  P  T  C  T  E  F  L  T  N  A  K  L  E  K  R :   *  L  W  K  C  C  V  G  I  R  K  R  R  S  L  Y  F  W  N  Q  S  L  K  N  R  S  S  S  N  G  *  S  M  C  *  Y  A  F  L  G  E  Q  A  H  I  I  S  A  S  I  V  E  W  L  C  I  Y  K  T  T  L  K  T  R  V  Q  A  I  *  L  G  V  *  H  C  C  L  N  I  S  T  I  L  D  I  L  K  L  Y  N  </second_frame>
            <third_frame>   L  F  A  L  T  S  C  L  L  N  N  G  C  I  F  T  L  P  S  F  F  C  L  L  L  H  N  S  G  T  E  I  F  R  L  R  S  I  S  T  C  *  V  F  T  L  P  E  N  T  W  F  L  R  Q  C  G  L  R  S  A  Y  L  L  *  L  C  L  F  R  *  P  V  Q  L  R  E  E  A  Y  G  *  Y  F  C  G  M  H  F  R  C  L  V  F  L  S  L  Y  S  R  R  *  P  C  L  G  F  C  S  H  F  T  Q  E  I  A  D  *  *  T  C  Y  C  S  S  L  P  R  E  Y  T  F  R  C  V  Y  Y  *  S  C  F  Q  :  A  G  Y  V  H  T  G  C  I  *  G  A  S  R  V  W  V  R  L  R  L  G  *  K  W  K  Y  C  Y  *  L  S  C  D  S  R  C  F  *  S  Q  :  S  D  S  C  *  S  N  Y  L  *  C  K  S  C  W  I  *  P  R  *  R  C  C  C  V  A  Y  *  C  T  K  R  Q  V  A  T  Y  T  N  W  R  I  G  R  L  A  R  W  S  K  S  I  C  Y  W  K  S   : I  W  T  *  S  Y  T  H  H  W  C  N  Q  :  W  A  *  E  R  N  Q  F  C  G  Y  W  P  P  N  P  R  C  Y  S  D  R  C  S  N  Q  S  W  *  Q  W  R  A  T  S  R  *  F  W  K  S  Y  W  N  K  Y  C  Y  I  F  S  F  R  C  I  I  R  C  W  I  F  N  S  S  *  Y   : C  Q  W  H  C  *  S  V  S  A  V  W  E  S  H  K  A  N  F  G  H  K  V  C  T  *  S  V  R  *  A  T  G  S  H  W  S  T  C  P  G  C  S  S  K  W  S  C  R  Q  S   : R  S  S  T  Y  *  T  *  F  L  R  K  T  Y  F  R  *  Y  N  H  I  Y  K  W  K  E  G  L  *  W  H  R  L  V  Q  N  S  *  P  M  Q  S  W  R  K   : G  N  C  G  S  A  A  W  G  S  E  R  E  D  P  C  T  S  G  T  K  A  *  R  I  V  V  P  Q  M  D  R  V  C  V  D  M  H  F  L  A  N  K  P  I  L  L  V  H  Q  L  L  N  G  C  V  Y  T  K  Q  R  L  K  L  G  C  K  Q  Y  S  W  E  S  N  T  A  A  *  I  F  L  L  Y  *  I  S  S  N  C  I  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0190P16.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23002" stop="22575"/>
                    <exon start="22391" stop="22269"/>
                    <exon start="21961" stop="21790"/>
                    <exon start="21065" stop="21028"/>
                    <exon start="20615" stop="20417"/>
                    <exon start="20234" stop="20082"/>
                    <exon start="19881" stop="19747"/>
                    <exon start="19290" stop="19213"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1323</number_coding_nucleotides>
                  <number_encoded_amino_acids>441</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSLLSPVVFLTMAASSHSLASSACFSTTPARKFSGSDRFQLAKSLLCRKIPGFSGSVVCARRICSNYASSGDQSNYGKKLMDSIFVACTSVALSFSLYIADVDPASAFVVTSPRKLQTDELATVRLFQENTPSVVYITNLASRQDMFTLDVFEVPQGSGSGFVWDKNGNIVTNYHVIRGASDLRVTLADQTTYDAKVVGFDQDKDVAVLHIDAPKDKLRPIPIGVSADLLVGQKVFAIGNPFGLDHTLTTGVISGLRREINSAATGRPIQDVIQTDAAINPGNSGGPLLDSSGNLIGINTAIYSPSGASSGVGFSIPVDTVSGIVDQLVQFGKVTRPILGIKFAPDQSVEQLGVTGVLVLDAPPNGPAGKAGLLPTKRDSYGRLILGDIITSINGKKVSNGTDLYRILDQCKVGEKVIVEVLRGDQKEKIPVLLEPKPEES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="23002" e_stop="22575"/>
            <exon e_start="22391" e_stop="22269"/>
            <exon e_start="21961" e_stop="21749"/>
            <exon e_start="21065" e_stop="21028"/>
            <exon e_start="20615" e_stop="20417"/>
            <exon e_start="20234" e_stop="20082"/>
            <exon e_start="19881" e_stop="19747"/>
            <exon e_start="19290" e_stop="19019"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.964" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.779" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.886" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="0.990"/>
          <exon-intron don_prob="1.000" acc_prob="0.908" e_score="0.987"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="23002" e_stop="22575" e_length="428"/>
          </exon>
          <intron i_serial="1" don_prob="0.964" acc_prob="0.997">
            <gDNA_intron_boundary i_start="22574" i_stop="22392" i_length="183"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="22391" e_stop="22269" e_length="123"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="22268" i_stop="21962" i_length="307"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="21961" e_stop="21749" e_length="213"/>
          </exon>
          <intron i_serial="3" don_prob="0.779" acc_prob="0.991">
            <gDNA_intron_boundary i_start="21748" i_stop="21066" i_length="683"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="21065" e_stop="21028" e_length="38"/>
          </exon>
          <intron i_serial="4" don_prob="0.968" acc_prob="0.886">
            <gDNA_intron_boundary i_start="21027" i_stop="20616" i_length="412"/>
          </intron>
          <exon e_serial="5" e_score="0.990">
            <gDNA_exon_boundary e_start="20615" e_stop="20417" e_length="199"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="20416" i_stop="20235" i_length="182"/>
          </intron>
          <exon e_serial="6" e_score="0.987">
            <gDNA_exon_boundary e_start="20234" e_stop="20082" e_length="153"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.908">
            <gDNA_intron_boundary i_start="20081" i_stop="19882" i_length="200"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="19881" e_stop="19747" e_length="135"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="19746" i_stop="19291" i_length="456"/>
          </intron>
          <exon e_serial="8" e_score="0.993">
            <gDNA_exon_boundary e_start="19290" e_stop="19019" e_length="272"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23002" stop="22575"/>
              <exon start="22391" stop="22269"/>
              <exon start="21961" stop="21812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22999" stop="22625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22997" stop="22575"/>
              <exon start="22391" stop="22269"/>
              <exon start="21961" stop="21931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22996" stop="22575"/>
              <exon start="22391" stop="22269"/>
              <exon start="21961" stop="21930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291953" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22986" stop="22575"/>
              <exon start="22391" stop="22363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22986" stop="22737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22984" stop="22575"/>
              <exon start="22391" stop="22292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22979" stop="22575"/>
              <exon start="22391" stop="22269"/>
              <exon start="21961" stop="21831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22932" stop="22575"/>
              <exon start="22391" stop="22269"/>
              <exon start="21961" stop="21931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E621090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22888" stop="22575"/>
              <exon start="22391" stop="22269"/>
              <exon start="21961" stop="21834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22830" stop="22575"/>
              <exon start="22391" stop="22269"/>
              <exon start="21961" stop="21872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22764" stop="22575"/>
              <exon start="22391" stop="22269"/>
              <exon start="21961" stop="21749"/>
              <exon start="21065" stop="21042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21065" stop="21028"/>
              <exon start="20615" stop="20417"/>
              <exon start="20234" stop="20082"/>
              <exon start="19881" stop="19747"/>
              <exon start="19290" stop="19040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418572" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20160" stop="20082"/>
              <exon start="19881" stop="19747"/>
              <exon start="19290" stop="19019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278984" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCTCTTTGCTCTCACCAGTTGTCTTCTTAACAATGGCTGCATCTTCACACTCCCTAGCTTCTTCTGCTTGCTTCTCCACAACTCCGGCACGGAAATTTTCCGGCTCAGATCGATTTCAACTTGCTAAGTCTTTACTCTGCCGGAAAATACCTGGTTTCTCCGGCAGTGTGGTCTGCGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGGTGACCAGTCCAACTACGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAG : GCAGGATATGTTCACACTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAG : AGTGACTCTTGCTGATCAAACTACTTATGATGCAAAAGTTGTTGGATTTGACCAAGATAAAGATGTTGCTGTGTTGCATATTGATGCACCAAAAGACAAGTTGCGACCTATACCAATTGGCGTATCGGCAGACTTGCTCGTTGGTCAAAAAGTATTTGCTATTGGAAATCCAGTATGTGACGAAATACAAACCTGCTAGAGAATTCTGTTCAT : TTTGGACTTGATCATACACTCACCACTGGTGTAATCAG : TGGGCTTAGGAGAGAAATCAATTCTGCGGCTACTGGCCGCCCAATCCAAGATGTTATTCAGACAGATGCAGCAATCAATCCTGGTAACAGTGGAGGGCCACTTCTAGATAGTTCTGGAAATCTTATTGGAATAAATACTGCTATATATTCTCCTTCCGGTGCATCATCAGGTGTTGGATTTTCAATTCCAGTTGATACT : GTCAGTGGCATTGTTGATCAGTTAGTGCAGTTTGGGAAAGTCACAAGGCCAATTTTGGGCATAAAGTTTGCACCTGATCAGTCCGTTGAGCAACTGGGAGTCACTGGAGTACTTGTCCTGGATGCTCCTCCAAATGGTCCTGCAGGCAAAGCA : GGTCTTCTACCTACTAAACGTGATTCCTACGGAAGACTTATTTTAGGTGATATAATCACATCTATAAATGGAAAGAAGGTCTCTAATGGCACCGACTTGTACAGAATTCTTGACCAATGCAAAGTTGGAGAAAAG : GTAATTGTGGAAGTGCTGCGTGGGGATCAGAAAGAGAAGATCCCTGTACTTCTGGAACCAAAGCCTGAAGAATCGTAGTTCCTCAAATGGATAGAGTATGTGTTGATATGCATTTCTTGGCGAACAAGCCCATATTATTAGTGCATCAATTGTTGAATGGTTGTGTATATACAAAACAACGCTTAAAACTAGGGTGCAAGCAATATAGTTGGGAGTCTAACACTGCTGCCTAAATATTTCTACTATATTAGATATCCTCAAATTGTATAATG</gDNA_template>
            <first_frame> S  S  L  L  S  P  V  V  F  L  T  M  A  A  S  S  H  S  L  A  S  S  A  C  F  S  T  T  P  A  R  K  F  S  G  S  D  R  F  Q  L  A  K  S  L  L  C  R  K  I  P  G  F  S  G  S  V  V  C  A  R  R  I  C  S  N  Y  A  S  S  G  D  Q  S  N  Y  G  K  K  L  M  D  S  I  F  V  A  C  T  S  V  A  L  S  F  S  L  Y  I  A  D  V  D  P  A  S  A  F  V  V  T  S  P  R  K  L  Q  T  D  E  L  A  T  V  R  L  F  Q  E  N  T  P  S  V  V  Y  I  T  N  L  A  S  R :   Q  D  M  F  T  L  D  V  F  E  V  P  Q  G  S  G  S  G  F  V  W  D  K  N  G  N  I  V  T  N  Y  H  V  I  R  G  A  S  D  L  R :   V  T  L  A  D  Q  T  T  Y  D  A  K  V  V  G  F  D  Q  D  K  D  V  A  V  L  H  I  D  A  P  K  D  K  L  R  P  I  P  I  G  V  S  A  D  L  L  V  G  Q  K  V  F  A  I  G  N  P  V  C  D  E  I  Q  T  C  *  R  I  L  F  I :   L  D  L  I  I  H  S  P  L  V  *  S   : V  G  L  G  E  K  S  I  L  R  L  L  A  A  Q  S  K  M  L  F  R  Q  M  Q  Q  S  I  L  V  T  V  E  G  H  F  *  I  V  L  E  I  L  L  E  *  I  L  L  Y  I  L  L  P  V  H  H  Q  V  L  D  F  Q  F  Q  L  I  L :   S  V  A  L  L  I  S  *  C  S  L  G  K  S  Q  G  Q  F  W  A  *  S  L  H  L  I  S  P  L  S  N  W  E  S  L  E  Y  L  S  W  M  L  L  Q  M  V  L  Q  A  K  Q :   V  F  Y  L  L  N  V  I  P  T  E  D  L  F  *  V  I  *  S  H  L  *  M  E  R  R  S  L  M  A  P  T  C  T  E  F  L  T  N  A  K  L  E  K  R :   *  L  W  K  C  C  V  G  I  R  K  R  R  S  L  Y  F  W  N  Q  S  L  K  N  R  S  S  S  N  G  *  S  M  C  *  Y  A  F  L  G  E  Q  A  H  I  I  S  A  S  I  V  E  W  L  C  I  Y  K  T  T  L  K  T  R  V  Q  A  I  *  L  G  V  *  H  C  C  L  N  I  S  T  I  L  D  I  L  K  L  Y  N  </first_frame>
            <second_frame>  P  L  C  S  H  Q  L  S  S  *  Q  W  L  H  L  H  T  P  *  L  L  L  L  A  S  P  Q  L  R  H  G  N  F  P  A  Q  I  D  F  N  L  L  S  L  Y  S  A  G  K  Y  L  V  S  P  A  V  W  S  A  L  G  V  F  A  L  T  M  P  L  P  V  T  S  P  T  T  G  R  S  L  W  I  V  F  L  W  H  A  L  P  L  P  C  L  S  L  S  I  *  Q  T  L  T  L  P  R  L  L  *  S  L  H  P  G  N  C  R  L  M  N  L  L  L  F  V  S  S  K  R  I  H  L  P  L  C  I  L  L  I  L  L  P   : G  R  I  C  S  H  W  M  Y  L  R  C  L  K  G  L  G  Q  A  S  S  G  I  K  M  E  I  L  L  L  I  I  M  *  F  E  V  L  L  I  S   : E  *  L  L  L  I  K  L  L  M  M  Q  K  L  L  D  L  T  K  I  K  M  L  L  C  C  I  L  M  H  Q  K  T  S  C  D  L  Y  Q  L  A  Y  R  Q  T  C  S  L  V  K  K  Y  L  L  L  E  I  Q  Y  V  T  K  Y  K  P  A  R  E  F  C  S   : F  W  T  *  S  Y  T  H  H  W  C  N  Q  :  W  A  *  E  R  N  Q  F  C  G  Y  W  P  P  N  P  R  C  Y  S  D  R  C  S  N  Q  S  W  *  Q  W  R  A  T  S  R  *  F  W  K  S  Y  W  N  K  Y  C  Y  I  F  S  F  R  C  I  I  R  C  W  I  F  N  S  S  *  Y   : C  Q  W  H  C  *  S  V  S  A  V  W  E  S  H  K  A  N  F  G  H  K  V  C  T  *  S  V  R  *  A  T  G  S  H  W  S  T  C  P  G  C  S  S  K  W  S  C  R  Q  S   : R  S  S  T  Y  *  T  *  F  L  R  K  T  Y  F  R  *  Y  N  H  I  Y  K  W  K  E  G  L  *  W  H  R  L  V  Q  N  S  *  P  M  Q  S  W  R  K   : G  N  C  G  S  A  A  W  G  S  E  R  E  D  P  C  T  S  G  T  K  A  *  R  I  V  V  P  Q  M  D  R  V  C  V  D  M  H  F  L  A  N  K  P  I  L  L  V  H  Q  L  L  N  G  C  V  Y  T  K  Q  R  L  K  L  G  C  K  Q  Y  S  W  E  S  N  T  A  A  *  I  F  L  L  Y  *  I  S  S  N  C  I  M </second_frame>
            <third_frame>   L  F  A  L  T  S  C  L  L  N  N  G  C  I  F  T  L  P  S  F  F  C  L  L  L  H  N  S  G  T  E  I  F  R  L  R  S  I  S  T  C  *  V  F  T  L  P  E  N  T  W  F  L  R  Q  C  G  L  R  S  A  Y  L  L  *  L  C  L  F  R  *  P  V  Q  L  R  E  E  A  Y  G  *  Y  F  C  G  M  H  F  R  C  L  V  F  L  S  L  Y  S  R  R  *  P  C  L  G  F  C  S  H  F  T  Q  E  I  A  D  *  *  T  C  Y  C  S  S  L  P  R  E  Y  T  F  R  C  V  Y  Y  *  S  C  F  Q  :  A  G  Y  V  H  T  G  C  I  *  G  A  S  R  V  W  V  R  L  R  L  G  *  K  W  K  Y  C  Y  *  L  S  C  D  S  R  C  F  *  S  Q  :  S  D  S  C  *  S  N  Y  L  *  C  K  S  C  W  I  *  P  R  *  R  C  C  C  V  A  Y  *  C  T  K  R  Q  V  A  T  Y  T  N  W  R  I  G  R  L  A  R  W  S  K  S  I  C  Y  W  K  S  S  M  *  R  N  T  N  L  L  E  N  S  V  H  :  F  G  L  D  H  T  L  T  T  G  V  I  S :   G  L  R  R  E  I  N  S  A  A  T  G  R  P  I  Q  D  V  I  Q  T  D  A  A  I  N  P  G  N  S  G  G  P  L  L  D  S  S  G  N  L  I  G  I  N  T  A  I  Y  S  P  S  G  A  S  S  G  V  G  F  S  I  P  V  D  T  :  V  S  G  I  V  D  Q  L  V  Q  F  G  K  V  T  R  P  I  L  G  I  K  F  A  P  D  Q  S  V  E  Q  L  G  V  T  G  V  L  V  L  D  A  P  P  N  G  P  A  G  K  A  :  G  L  L  P  T  K  R  D  S  Y  G  R  L  I  L  G  D  I  I  T  S  I  N  G  K  K  V  S  N  G  T  D  L  Y  R  I  L  D  Q  C  K  V  G  E  K  :  V  I  V  E  V  L  R  G  D  Q  K  E  K  I  P  V  L  L  E  P  K  P  E  E  S  *  F  L  K  W  I  E  Y  V  L  I  C  I  S  W  R  T  S  P  Y  Y  *  C  I  N  C  *  M  V  V  Y  I  Q  N  N  A  *  N  *  G  A  S  N  I  V  G  S  L  T  L  L  P  K  Y  F  Y  Y  I  R  Y  P  Q  I  V  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0190P16.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23002" stop="22575"/>
                    <exon start="22391" stop="22269"/>
                    <exon start="21961" stop="21763"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>747</number_coding_nucleotides>
                  <number_encoded_amino_acids>249</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSLLSPVVFLTMAASSHSLASSACFSTTPARKFSGSDRFQLAKSLLCRKIPGFSGSVVCARRICSNYASSGDQSNYGKKLMDSIFVACTSVALSFSLYIADVDPASAFVVTSPRKLQTDELATVRLFQENTPSVVYITNLASRQDMFTLDVFEVPQGSGSGFVWDKNGNIVTNYHVIRGASDLRVTLADQTTYDAKVVGFDQDKDVAVLHIDAPKDKLRPIPIGVSADLLVGQKVFAIGNPVCDEIQTC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0190P16.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21781" stop="21749"/>
                    <exon start="21065" stop="21028"/>
                    <exon start="20615" stop="20417"/>
                    <exon start="20234" stop="20082"/>
                    <exon start="19881" stop="19747"/>
                    <exon start="19290" stop="19213"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>633</number_coding_nucleotides>
                  <number_encoded_amino_acids>211</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNTNLLENSVHFGLDHTLTTGVISGLRREINSAATGRPIQDVIQTDAAINPGNSGGPLLDSSGNLIGINTAIYSPSGASSGVGFSIPVDTVSGIVDQLVQFGKVTRPILGIKFAPDQSVEQLGVTGVLVLDAPPNGPAGKAGLLPTKRDSYGRLILGDIITSINGKKVSNGTDLYRILDQCKVGEKVIVEVLRGDQKEKIPVLLEPKPEES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="23000" e_stop="22575"/>
            <exon e_start="22391" e_stop="22269"/>
            <exon e_start="21961" e_stop="21924"/>
            <exon e_start="20445" e_stop="20417"/>
            <exon e_start="20234" e_stop="20082"/>
            <exon e_start="19881" e_stop="19747"/>
            <exon e_start="19290" e_stop="19019"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.964" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.463" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="0.966"/>
          <exon-intron don_prob="1.000" acc_prob="0.908" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="23000" e_stop="22575" e_length="426"/>
          </exon>
          <intron i_serial="1" don_prob="0.964" acc_prob="0.997">
            <gDNA_intron_boundary i_start="22574" i_stop="22392" i_length="183"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="22391" e_stop="22269" e_length="123"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="22268" i_stop="21962" i_length="307"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="21961" e_stop="21924" e_length="38"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.463">
            <gDNA_intron_boundary i_start="21923" i_stop="20446" i_length="1478"/>
          </intron>
          <exon e_serial="4" e_score="0.966">
            <gDNA_exon_boundary e_start="20445" e_stop="20417" e_length="29"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="20416" i_stop="20235" i_length="182"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="20234" e_stop="20082" e_length="153"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.908">
            <gDNA_intron_boundary i_start="20081" i_stop="19882" i_length="200"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="19881" e_stop="19747" e_length="135"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="19746" i_stop="19291" i_length="456"/>
          </intron>
          <exon e_serial="7" e_score="0.993">
            <gDNA_exon_boundary e_start="19290" e_stop="19019" e_length="272"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23000" stop="22575"/>
              <exon start="22391" stop="22269"/>
              <exon start="21961" stop="21924"/>
              <exon start="20445" stop="20417"/>
              <exon start="20234" stop="20082"/>
              <exon start="19881" stop="19793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22999" stop="22625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22997" stop="22575"/>
              <exon start="22391" stop="22269"/>
              <exon start="21961" stop="21931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22996" stop="22575"/>
              <exon start="22391" stop="22269"/>
              <exon start="21961" stop="21930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291953" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22986" stop="22575"/>
              <exon start="22391" stop="22363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22986" stop="22737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22984" stop="22575"/>
              <exon start="22391" stop="22292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22932" stop="22575"/>
              <exon start="22391" stop="22269"/>
              <exon start="21961" stop="21931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E621090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20160" stop="20082"/>
              <exon start="19881" stop="19747"/>
              <exon start="19290" stop="19019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278984" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCTTTGCTCTCACCAGTTGTCTTCTTAACAATGGCTGCATCTTCACACTCCCTAGCTTCTTCTGCTTGCTTCTCCACAACTCCGGCACGGAAATTTTCCGGCTCAGATCGATTTCAACTTGCTAAGTCTTTACTCTGCCGGAAAATACCTGGTTTCTCCGGCAGTGTGGTCTGCGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGGTGACCAGTCCAACTACGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAG : GCAGGATATGTTCACACTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAG : AGTGACTCTTGCTGATCAAACTACTTATGATGCAAAAG : GTGTTGGATTTTCAATTCCAGTTGATACT : GTCAGTGGCATTGTTGATCAGTTAGTGCAGTTTGGGAAAGTCACAAGGCCAATTTTGGGCATAAAGTTTGCACCTGATCAGTCCGTTGAGCAACTGGGAGTCACTGGAGTACTTGTCCTGGATGCTCCTCCAAATGGTCCTGCAGGCAAAGCA : GGTCTTCTACCTACTAAACGTGATTCCTACGGAAGACTTATTTTAGGTGATATAATCACATCTATAAATGGAAAGAAGGTCTCTAATGGCACCGACTTGTACAGAATTCTTGACCAATGCAAAGTTGGAGAAAAG : GTAATTGTGGAAGTGCTGCGTGGGGATCAGAAAGAGAAGATCCCTGTACTTCTGGAACCAAAGCCTGAAGAATCGTAGTTCCTCAAATGGATAGAGTATGTGTTGATATGCATTTCTTGGCGAACAAGCCCATATTATTAGTGCATCAATTGTTGAATGGTTGTGTATATACAAAACAACGCTTAAAACTAGGGTGCAAGCAATATAGTTGGGAGTCTAACACTGCTGCCTAAATATTTCTACTATATTAGATATCCTCAAATTGTATAATG</gDNA_template>
            <first_frame> L  F  A  L  T  S  C  L  L  N  N  G  C  I  F  T  L  P  S  F  F  C  L  L  L  H  N  S  G  T  E  I  F  R  L  R  S  I  S  T  C  *  V  F  T  L  P  E  N  T  W  F  L  R  Q  C  G  L  R  S  A  Y  L  L  *  L  C  L  F  R  *  P  V  Q  L  R  E  E  A  Y  G  *  Y  F  C  G  M  H  F  R  C  L  V  F  L  S  L  Y  S  R  R  *  P  C  L  G  F  C  S  H  F  T  Q  E  I  A  D  *  *  T  C  Y  C  S  S  L  P  R  E  Y  T  F  R  C  V  Y  Y  *  S  C  F  Q  :  A  G  Y  V  H  T  G  C  I  *  G  A  S  R  V  W  V  R  L  R  L  G  *  K  W  K  Y  C  Y  *  L  S  C  D  S  R  C  F  *  S  Q  :  S  D  S  C  *  S  N  Y  L  *  C  K  R :   C  W  I  F  N  S  S  *  Y   : C  Q  W  H  C  *  S  V  S  A  V  W  E  S  H  K  A  N  F  G  H  K  V  C  T  *  S  V  R  *  A  T  G  S  H  W  S  T  C  P  G  C  S  S  K  W  S  C  R  Q  S   : R  S  S  T  Y  *  T  *  F  L  R  K  T  Y  F  R  *  Y  N  H  I  Y  K  W  K  E  G  L  *  W  H  R  L  V  Q  N  S  *  P  M  Q  S  W  R  K   : G  N  C  G  S  A  A  W  G  S  E  R  E  D  P  C  T  S  G  T  K  A  *  R  I  V  V  P  Q  M  D  R  V  C  V  D  M  H  F  L  A  N  K  P  I  L  L  V  H  Q  L  L  N  G  C  V  Y  T  K  Q  R  L  K  L  G  C  K  Q  Y  S  W  E  S  N  T  A  A  *  I  F  L  L  Y  *  I  S  S  N  C  I  M </first_frame>
            <second_frame>  S  L  L  S  P  V  V  F  L  T  M  A  A  S  S  H  S  L  A  S  S  A  C  F  S  T  T  P  A  R  K  F  S  G  S  D  R  F  Q  L  A  K  S  L  L  C  R  K  I  P  G  F  S  G  S  V  V  C  A  R  R  I  C  S  N  Y  A  S  S  G  D  Q  S  N  Y  G  K  K  L  M  D  S  I  F  V  A  C  T  S  V  A  L  S  F  S  L  Y  I  A  D  V  D  P  A  S  A  F  V  V  T  S  P  R  K  L  Q  T  D  E  L  A  T  V  R  L  F  Q  E  N  T  P  S  V  V  Y  I  T  N  L  A  S  R :   Q  D  M  F  T  L  D  V  F  E  V  P  Q  G  S  G  S  G  F  V  W  D  K  N  G  N  I  V  T  N  Y  H  V  I  R  G  A  S  D  L  R :   V  T  L  A  D  Q  T  T  Y  D  A  K   : G  V  G  F  S  I  P  V  D  T  :  V  S  G  I  V  D  Q  L  V  Q  F  G  K  V  T  R  P  I  L  G  I  K  F  A  P  D  Q  S  V  E  Q  L  G  V  T  G  V  L  V  L  D  A  P  P  N  G  P  A  G  K  A  :  G  L  L  P  T  K  R  D  S  Y  G  R  L  I  L  G  D  I  I  T  S  I  N  G  K  K  V  S  N  G  T  D  L  Y  R  I  L  D  Q  C  K  V  G  E  K  :  V  I  V  E  V  L  R  G  D  Q  K  E  K  I  P  V  L  L  E  P  K  P  E  E  S  *  F  L  K  W  I  E  Y  V  L  I  C  I  S  W  R  T  S  P  Y  Y  *  C  I  N  C  *  M  V  V  Y  I  Q  N  N  A  *  N  *  G  A  S  N  I  V  G  S  L  T  L  L  P  K  Y  F  Y  Y  I  R  Y  P  Q  I  V  *   </second_frame>
            <third_frame>   L  C  S  H  Q  L  S  S  *  Q  W  L  H  L  H  T  P  *  L  L  L  L  A  S  P  Q  L  R  H  G  N  F  P  A  Q  I  D  F  N  L  L  S  L  Y  S  A  G  K  Y  L  V  S  P  A  V  W  S  A  L  G  V  F  A  L  T  M  P  L  P  V  T  S  P  T  T  G  R  S  L  W  I  V  F  L  W  H  A  L  P  L  P  C  L  S  L  S  I  *  Q  T  L  T  L  P  R  L  L  *  S  L  H  P  G  N  C  R  L  M  N  L  L  L  F  V  S  S  K  R  I  H  L  P  L  C  I  L  L  I  L  L  P   : G  R  I  C  S  H  W  M  Y  L  R  C  L  K  G  L  G  Q  A  S  S  G  I  K  M  E  I  L  L  L  I  I  M  *  F  E  V  L  L  I  S   : E  *  L  L  L  I  K  L  L  M  M  Q  K  :  V  L  D  F  Q  F  Q  L  I  L :   S  V  A  L  L  I  S  *  C  S  L  G  K  S  Q  G  Q  F  W  A  *  S  L  H  L  I  S  P  L  S  N  W  E  S  L  E  Y  L  S  W  M  L  L  Q  M  V  L  Q  A  K  Q :   V  F  Y  L  L  N  V  I  P  T  E  D  L  F  *  V  I  *  S  H  L  *  M  E  R  R  S  L  M  A  P  T  C  T  E  F  L  T  N  A  K  L  E  K  R :   *  L  W  K  C  C  V  G  I  R  K  R  R  S  L  Y  F  W  N  Q  S  L  K  N  R  S  S  S  N  G  *  S  M  C  *  Y  A  F  L  G  E  Q  A  H  I  I  S  A  S  I  V  E  W  L  C  I  Y  K  T  T  L  K  T  R  V  Q  A  I  *  L  G  V  *  H  C  C  L  N  I  S  T  I  L  D  I  L  K  L  Y  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0190P16.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22999" stop="22575"/>
                    <exon start="22391" stop="22269"/>
                    <exon start="21961" stop="21924"/>
                    <exon start="20445" stop="20417"/>
                    <exon start="20234" stop="20082"/>
                    <exon start="19881" stop="19747"/>
                    <exon start="19290" stop="19213"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>978</number_coding_nucleotides>
                  <number_encoded_amino_acids>326</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLLSPVVFLTMAASSHSLASSACFSTTPARKFSGSDRFQLAKSLLCRKIPGFSGSVVCARRICSNYASSGDQSNYGKKLMDSIFVACTSVALSFSLYIADVDPASAFVVTSPRKLQTDELATVRLFQENTPSVVYITNLASRQDMFTLDVFEVPQGSGSGFVWDKNGNIVTNYHVIRGASDLRVTLADQTTYDAKGVGFSIPVDTVSGIVDQLVQFGKVTRPILGIKFAPDQSVEQLGVTGVLVLDAPPNGPAGKAGLLPTKRDSYGRLILGDIITSINGKKVSNGTDLYRILDQCKVGEKVIVEVLRGDQKEKIPVLLEPKPEES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="22999" e_stop="22575"/>
            <exon e_start="22391" e_stop="22269"/>
            <exon e_start="21971" e_stop="21910"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.964" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22999" e_stop="22575" e_length="425"/>
          </exon>
          <intron i_serial="1" don_prob="0.964" acc_prob="0.997">
            <gDNA_intron_boundary i_start="22574" i_stop="22392" i_length="183"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="22391" e_stop="22269" e_length="123"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="22268" i_stop="21972" i_length="297"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="21971" e_stop="21910" e_length="62"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22999" stop="22625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22997" stop="22575"/>
              <exon start="22391" stop="22269"/>
              <exon start="21971" stop="21910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22986" stop="22575"/>
              <exon start="22391" stop="22363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22986" stop="22737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22984" stop="22575"/>
              <exon start="22391" stop="22292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725724" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTTTGCTCTCACCAGTTGTCTTCTTAACAATGGCTGCATCTTCACACTCCCTAGCTTCTTCTGCTTGCTTCTCCACAACTCCGGCACGGAAATTTTCCGGCTCAGATCGATTTCAACTTGCTAAGTCTTTACTCTGCCGGAAAATACCTGGTTTCTCCGGCAGTGTGGTCTGCGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGGTGACCAGTCCAACTACGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAG : GCAGGATATGTTCACACTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAG : TCTTGCTCAGAGTGACTCTTGCTGATCAAACTACTTATGATGCAAAAGTTGTTGGATTTGAC</gDNA_template>
            <first_frame> S  L  L  S  P  V  V  F  L  T  M  A  A  S  S  H  S  L  A  S  S  A  C  F  S  T  T  P  A  R  K  F  S  G  S  D  R  F  Q  L  A  K  S  L  L  C  R  K  I  P  G  F  S  G  S  V  V  C  A  R  R  I  C  S  N  Y  A  S  S  G  D  Q  S  N  Y  G  K  K  L  M  D  S  I  F  V  A  C  T  S  V  A  L  S  F  S  L  Y  I  A  D  V  D  P  A  S  A  F  V  V  T  S  P  R  K  L  Q  T  D  E  L  A  T  V  R  L  F  Q  E  N  T  P  S  V  V  Y  I  T  N  L  A  S  R :   Q  D  M  F  T  L  D  V  F  E  V  P  Q  G  S  G  S  G  F  V  W  D  K  N  G  N  I  V  T  N  Y  H  V  I  R  G  A  S  D  L  S :   L  A  Q  S  D  S  C  *  S  N  Y  L  *  C  K  S  C  W  I  *  </first_frame>
            <second_frame>  L  C  S  H  Q  L  S  S  *  Q  W  L  H  L  H  T  P  *  L  L  L  L  A  S  P  Q  L  R  H  G  N  F  P  A  Q  I  D  F  N  L  L  S  L  Y  S  A  G  K  Y  L  V  S  P  A  V  W  S  A  L  G  V  F  A  L  T  M  P  L  P  V  T  S  P  T  T  G  R  S  L  W  I  V  F  L  W  H  A  L  P  L  P  C  L  S  L  S  I  *  Q  T  L  T  L  P  R  L  L  *  S  L  H  P  G  N  C  R  L  M  N  L  L  L  F  V  S  S  K  R  I  H  L  P  L  C  I  L  L  I  L  L  P   : G  R  I  C  S  H  W  M  Y  L  R  C  L  K  G  L  G  Q  A  S  S  G  I  K  M  E  I  L  L  L  I  I  M  *  F  E  V  L  L  I  S   : V  L  L  R  V  T  L  A  D  Q  T  T  Y  D  A  K  V  V  G  F  D </second_frame>
            <third_frame>   F  A  L  T  S  C  L  L  N  N  G  C  I  F  T  L  P  S  F  F  C  L  L  L  H  N  S  G  T  E  I  F  R  L  R  S  I  S  T  C  *  V  F  T  L  P  E  N  T  W  F  L  R  Q  C  G  L  R  S  A  Y  L  L  *  L  C  L  F  R  *  P  V  Q  L  R  E  E  A  Y  G  *  Y  F  C  G  M  H  F  R  C  L  V  F  L  S  L  Y  S  R  R  *  P  C  L  G  F  C  S  H  F  T  Q  E  I  A  D  *  *  T  C  Y  C  S  S  L  P  R  E  Y  T  F  R  C  V  Y  Y  *  S  C  F  Q  :  A  G  Y  V  H  T  G  C  I  *  G  A  S  R  V  W  V  R  L  R  L  G  *  K  W  K  Y  C  Y  *  L  S  C  D  S  R  C  F  *  S  Q  :  S  C  S  E  *  L  L  L  I  K  L  L  M  M  Q  K  L  L  D  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0190P16.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22999" stop="22575"/>
                    <exon start="22391" stop="22269"/>
                    <exon start="21971" stop="21947"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>570</number_coding_nucleotides>
                  <number_encoded_amino_acids>190</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLLSPVVFLTMAASSHSLASSACFSTTPARKFSGSDRFQLAKSLLCRKIPGFSGSVVCARRICSNYASSGDQSNYGKKLMDSIFVACTSVALSFSLYIADVDPASAFVVTSPRKLQTDELATVRLFQENTPSVVYITNLASRQDMFTLDVFEVPQGSGSGFVWDKNGNIVTNYHVIRGASDLSLAQSDSC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="22736" PGL_stop="23007"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22736" e_stop="23007"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="22736" e_stop="23007" e_length="272"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22736" stop="23007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278374" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTGCATGCCACAAAAATACTATCCATAAGCTTCTTCCCGTAGTTGGACTGGTCACCGGAAGAGGCATAGTTAGAGCAAATACGCCGAGCGCAGACCACACTGCCGGAGAAACCAGGTATTTTCCGGCAGAGTAAAGACTTAGCAAGTTGAAATCGATCTGAGCCGGAAAATTTCCGTGCCGGAGTTGTGGAGAAGCAAGCAGAAGAAGCTAGGGAGTGTGAAGATGCAGCCATTGTTAAGAAGACAACTGGTGAGAGCAAAGAGGAAGACC</gDNA_template>
            <first_frame> S  A  C  H  K  N  T  I  H  K  L  L  P  V  V  G  L  V  T  G  R  G  I  V  R  A  N  T  P  S  A  D  H  T  A  G  E  T  R  Y  F  P  A  E  *  R  L  S  K  L  K  S  I  *  A  G  K  F  P  C  R  S  C  G  E  A  S  R  R  S  *  G  V  *  R  C  S  H  C  *  E  D  N  W  *  E  Q  R  G  R   </first_frame>
            <second_frame>  V  H  A  T  K  I  L  S  I  S  F  F  P  *  L  D  W  S  P  E  E  A  *  L  E  Q  I  R  R  A  Q  T  T  L  P  E  K  P  G  I  F  R  Q  S  K  D  L  A  S  *  N  R  S  E  P  E  N  F  R  A  G  V  V  E  K  Q  A  E  E  A  R  E  C  E  D  A  A  I  V  K  K  T  T  G  E  S  K  E  E  D  </second_frame>
            <third_frame>   C  M  P  Q  K  Y  Y  P  *  A  S  S  R  S  W  T  G  H  R  K  R  H  S  *  S  K  Y  A  E  R  R  P  H  C  R  R  N  Q  V  F  S  G  R  V  K  T  *  Q  V  E  I  D  L  S  R  K  I  S  V  P  E  L  W  R  S  K  Q  K  K  L  G  S  V  K  M  Q  P  L  L  R  R  Q  L  V  R  A  K  R  K  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0190P16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="28747" PGL_stop="25142"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28747" e_stop="28297"/>
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              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26545" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26534" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26531" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26531" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26530" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26420" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26287" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26285" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26280" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26264" stop="26174"/>
              <exon start="26088" stop="25951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26261" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402991" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26255" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26240" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26239" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26236" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26214" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26213" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26209" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26209" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26199" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26191" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26082" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26078" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285134" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26044" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26044" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321065" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26038" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26006" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293777" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26004" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26004" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26003" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25993" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25992" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25976" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25960" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294938" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25868" stop="25766"/>
              <exon start="25685" stop="25334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25864" stop="25766"/>
              <exon start="25685" stop="25398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25856" stop="25766"/>
              <exon start="25685" stop="25346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278439" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25848" stop="25766"/>
              <exon start="25685" stop="25329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25807" stop="25766"/>
              <exon start="25685" stop="25319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25804" stop="25766"/>
              <exon start="25685" stop="25345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25803" stop="25766"/>
              <exon start="25685" stop="25430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25801" stop="25766"/>
              <exon start="25685" stop="25345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25798" stop="25766"/>
              <exon start="25685" stop="25334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25796" stop="25766"/>
              <exon start="25685" stop="25329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365325" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25775" stop="25766"/>
              <exon start="25685" stop="25349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25682" stop="25345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25603" stop="25329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25569" stop="25320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25536" stop="25323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287260" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGAAATGTAAGGTTCTTGGCTTCTTAGCCATATGATATTAAGGCAAAAGTAAGATACAACATTGAATCTCCAACGTACAAACCTCATCTACAATGGATTGAAGCTCTCATTTGCTTAGCCATCACTTTCAACATTGTCTATTGGATTGGTTATATGTAAGAGTTCAAAAGCAGCAATAATCAAGAACACATCACTAGCTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG : AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG : CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA : CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG : TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG : GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC : TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG : GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAAATACGTTTGTGGTGGGCTTTGGTAGGTAAAAGATGTGGCCAGTATACTGCACTGGAAGCTCATGTAGAGACAGAGAGATCGTCAAGCAACAAGAGGATTCCCAGATTTAATCTGTTATTCTTGCTCATGTAGACCAAAAATTGGCCATAATAATCTACAAACACTCTTTTCGGCTACA</gDNA_template>
            <first_frame> L  K  C  K  V  L  G  F  L  A  I  *  Y  *  G  K  S  K  I  Q  H  *  I  S  N  V  Q  T  S  S  T  M  D  *  S  S  H  L  L  S  H  H  F  Q  H  C  L  L  D  W  L  Y  V  R  V  Q  K  Q  Q  *  S  R  T  H  H  *  L  Y  Y  Y  *  L  V  T  K  *  Y  K  G  Q  A  K  A  K  G  S  S  L  R  N  V  N  C  F  H  *  Q  L  P  Y  S  L  P  C  S  S  F  P  *  E  T  Y  S  S  R  C  L  R  K  A  W  Q  L  F  F  F  F  F  Y  S  K  S  H  Q  K  R  A  R  L  C  C  P  Y  S  H  H  Q  P  H  C   : E  R  R  N  G  K  R  I  L  R  S  S  H  C  C  T  R  E  T  P  Q  :  R  E  S  R  T  W  T  S  C  C  S  K  S  *  P  D  H  C  *  I  E  I  S  R  R  R  Q  G  I  R  P  C  *  A  H  E  S  W  L  Y  S  F  Q  D  *  E  I  *  :  H  K  P  S  L  I  W  *  A  S  K  G  P  E  P  *   : V  H  G  F  R  V  L  *  L  T  S  L  P  I  P  C  P  Q  L  P  T  W  *  G  I  H  G  S  *  H  R  Q  H  G  P  C  L  *  Q   : G  Q  V  L  W  S  R  S  S  H  *  I  R  R  S  S  S  *  G  G  E  H  R  C  H  W  P  Q  C  L  W  R  Y  Q  R  S  H  V  T  T  *  R  W  *  *  I  N  :  C  L  Y  *  G  L  G  K  N  L  F  T  C  Q  G  K  G  S  G  R  S  R  R  E  R  I  C  T  S  M  H  S  L  *  E   : G  S  C  E  R  F  T  W  K  S  A  Y  V  S  I  R  E  R  R  I  G  E  E  N  I  G  I  E  G  R  L  L  *  F  R  E  G  W  I  *  A  V  G  T  *  V  R  S  F  S  S  S  F  R  M  N  L  I  Q  L  P  F  G  P  H  N  F  L  P  F  F  F  F  R  L  T  V  L  L  L  R  K  I  N  C  V  Y  V  V  C  M  Y  Y  V  C  M  N  Q  I  W  K  S  T  R  C  Y  I  S  E  I  N  K  M  E  T  T  F  C  I  N  T  F  V  V  G  F  G  R  *  K  M  W  P  V  Y  C  T  G  S  S  C  R  D  R  E  I  V  K  Q  Q  E  D  S  Q  I  *  S  V  I  L  A  H  V  D  Q  K  L  A  I  I  I  Y  K  H  S  F  R  L   </first_frame>
            <second_frame>  *  N  V  R  F  L  A  S  *  P  Y  D  I  K  A  K  V  R  Y  N  I  E  S  P  T  Y  K  P  H  L  Q  W  I  E  A  L  I  C  L  A  I  T  F  N  I  V  Y  W  I  G  Y  M  *  E  F  K  S  S  N  N  Q  E  H  I  T  S  Y  T  I  T  S  *  *  Q  S  S  I  K  G  K  Q  K  L  K  E  A  H  *  E  M  S  T  A  S  I  N  N  C  L  T  L  S  P  A  Q  A  S  L  K  K  P  T  R  P  V  A  F  A  R  L  G  N  S  S  S  S  S  S  I  P  S  L  I  R  N  E  P  V  F  A  A  P  T  P  I  I  N  P  I  V  :  R  E  E  M  A  K  E  S  Y  D  Q  A  I  A  A  L  E  K  L  L  S :   E  K  A  E  L  G  P  V  A  A  A  R  V  D  Q  I  T  A  E  L  K  S  A  D  G  G  K  A  F  D  P  V  E  H  M  K  A  G  F  I  H  F  K  T  E  K  Y  D :   T  N  P  A  L  Y  G  E  L  A  K  G  Q  S  P  K  :  F  M  V  F  A  C  S  D  S  R  V  C  P  S  H  V  L  N  F  Q  P  G  E  A  F  M  V  R  N  I  A  N  M  V  P  A  Y  D  K  :  V  R  Y  S  G  V  G  A  A  I  E  Y  A  V  L  H  L  K  V  E  N  I  V  V  I  G  H  S  A  C  G  G  I  K  G  L  M  S  L  P  E  D  G  S  E  S  T :   A  F  I  E  D  W  V  K  I  C  L  P  A  K  A  K  V  L  A  D  H  G  G  K  E  F  A  H  Q  C  T  A  C  E  K  :  E  A  V  N  V  S  L  G  N  L  L  T  Y  P  F  V  R  E  G  L  V  K  K  T  L  A  L  K  G  G  Y  Y  D  F  V  K  G  G  F  E  L  W  G  L  E  F  G  L  S  P  P  L  S  V  *  T  *  F  N  Y  H  L  A  L  T  I  S  F  L  F  F  F  F  A  *  Q  Y  F  C  F  A  K  S  T  V  C  M  L  F  V  C  I  M  Y  V  *  I  K  Y  G  R  A  L  V  V  I  F  L  K  *  I  K  W  R  L  L  F  V  *  I  R  L  W  W  A  L  V  G  K  R  C  G  Q  Y  T  A  L  E  A  H  V  E  T  E  R  S  S  S  N  K  R  I  P  R  F  N  L  L  F  L  L  M  *  T  K  N  W  P  *  *  S  T  N  T  L  F  G  Y  </second_frame>
            <third_frame>   E  M  *  G  S  W  L  L  S  H  M  I  L  R  Q  K  *  D  T  T  L  N  L  Q  R  T  N  L  I  Y  N  G  L  K  L  S  F  A  *  P  S  L  S  T  L  S  I  G  L  V  I  C  K  S  S  K  A  A  I  I  K  N  T  S  L  A  I  L  L  L  V  S  N  K  V  V  *  R  A  S  K  S  *  R  K  L  I  E  K  C  Q  L  L  P  L  T  I  A  L  L  S  P  L  L  K  L  P  L  R  N  L  L  V  P  L  P  S  Q  G  L  A  T  L  L  L  L  L  L  F  Q  V  S  S  E  T  S  P  S  L  L  P  L  L  P  S  S  T  P  L  * :   E  K  K  W  Q  K  N  P  T  I  K  P  L  L  H  S  R  N  S  S   : A  R  K  Q  N  L  D  Q  L  L  Q  Q  E  L  T  R  S  L  L  N  *  N  Q  Q  T  A  A  R  H  S  T  L  L  S  T  *  K  L  A  L  F  I  S  R  L  R  N  M   : T  Q  T  Q  P  Y  M  V  S  *  Q  R  A  R  A  L  S :   S  W  F  S  R  A  L  T  H  E  S  A  H  P  M  S  S  T  S  N  L  V  R  H  S  W  F  V  T  S  P  T  W  S  L  L  M  T  R :   S  G  T  L  E  *  E  Q  P  L  N  T  P  F  F  I  L  R  W  R  T  S  L  S  L  A  T  V  L  V  E  V  S  K  V  S  C  H  Y  L  K  M  V  V  N  Q   : L  P  L  L  R  I  G  *  K  F  V  Y  L  P  R  Q  R  F  W  P  I  T  E  G  K  N  L  H  I  N  A  Q  L  V  R  R :   K  L  *  T  F  H  L  E  I  C  L  R  I  H  S  *  E  K  D  W  *  R  K  H  W  H  *  R  E  V  T  M  I  S  *  R  V  D  L  S  C  G  D  L  S  S  V  F  L  L  L  F  P  Y  E  L  N  S  I  T  I  W  P  S  Q  F  P  S  F  F  F  F  S  P  D  S  T  F  A  S  Q  N  Q  L  C  V  C  C  L  Y  V  L  C  M  Y  E  S  N  M  E  E  H  S  L  L  Y  F  *  N  K  *  N  G  D  Y  F  L  Y  K  Y  V  C  G  G  L  W  *  V  K  D  V  A  S  I  L  H  W  K  L  M  *  R  Q  R  D  R  Q  A  T  R  G  F  P  D  L  I  C  Y  S  C  S  C  R  P  K  I  G  H  N  N  L  Q  T  L  F  S  A  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0190P16.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28482" stop="28297"/>
                    <exon start="27099" stop="27038"/>
                    <exon start="26665" stop="26522"/>
                    <exon start="26423" stop="26375"/>
                    <exon start="26290" stop="26174"/>
                    <exon start="26088" stop="25949"/>
                    <exon start="25871" stop="25766"/>
                    <exon start="25685" stop="25521"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>966</number_coding_nucleotides>
                  <number_encoded_amino_acids>322</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMSTASINNCLTLSPAQASLKKPTRPVAFARLGNSSSSSSIPSLIRNEPVFAAPTPIINPIVREEMAKESYDQAIAALEKLLSEKAELGPVAAARVDQITAELKSADGGKAFDPVEHMKAGFIHFKTEKYDTNPALYGELAKGQSPKFMVFACSDSRVCPSHVLNFQPGEAFMVRNIANMVPAYDKVRYSGVGAAIEYAVLHLKVENIVVIGHSACGGIKGLMSLPEDGSESTAFIEDWVKICLPAKAKVLADHGGKEFAHQCTACEKEAVNVSLGNLLTYPFVREGLVKKTLALKGGYYDFVKGGFELWGLEFGLSPPLSV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0190P16.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25551" stop="25300"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VRSFSSSFRMNLIQLPFGPHNFLPFFFFRLTVLLLRKINCVYVVCMYYVCMNQIWKSTRCYISEINKMETTFCINTFVVGFGR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="28747" e_stop="28297"/>
            <exon e_start="27099" e_stop="27038"/>
            <exon e_start="26665" e_stop="26522"/>
            <exon e_start="26423" e_stop="26375"/>
            <exon e_start="26290" e_stop="26174"/>
            <exon e_start="26088" e_stop="25949"/>
            <exon e_start="25871" e_stop="25766"/>
            <exon e_start="25685" e_stop="25527"/>
            <exon e_start="25303" e_stop="25142"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.948" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.934" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28747" e_stop="28297" e_length="451"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.971">
            <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27099" e_stop="27038" e_length="62"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26665" e_stop="26522" e_length="144"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="26423" e_stop="26375" e_length="49"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.961">
            <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="26290" e_stop="26174" e_length="117"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.979">
            <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="26088" e_stop="25949" e_length="140"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.948">
            <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="25871" e_stop="25766" e_length="106"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="25685" e_stop="25527" e_length="159"/>
          </exon>
          <intron i_serial="8" don_prob="0.934" acc_prob="0.999">
            <gDNA_intron_boundary i_start="25526" i_stop="25304" i_length="223"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="25303" e_stop="25142" e_length="162"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28747" stop="28300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28746" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28746" stop="28297"/>
              <exon start="27099" stop="27080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28715" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26560"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28713" stop="28297"/>
              <exon start="27099" stop="27071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28554" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28552" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="26079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28551" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25787"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28551" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28551" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28550" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28550" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
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            <referenceDNA id="SGN-E295625" strand="+"/>
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            <gDNA_exon_coordinates>
              <exon start="28448" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28447" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28440" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="26038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28415" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28412" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28405" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28371" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="26021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28359" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28349" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28347" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28347" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296748" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28347" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="26014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28332" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28318" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28313" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="26025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="26053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27096" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27082" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278639" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26632" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26587" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26583" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26583" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26550" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26545" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26420" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26384" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25527"/>
              <exon start="25303" stop="25151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26285" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26280" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26264" stop="26174"/>
              <exon start="26088" stop="25951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26239" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26082" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26032" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25527"/>
              <exon start="25303" stop="25142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731998" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25983" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25527"/>
              <exon start="25303" stop="25151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732225" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGAAATGTAAGGTTCTTGGCTTCTTAGCCATATGATATTAAGGCAAAAGTAAGATACAACATTGAATCTCCAACGTACAAACCTCATCTACAATGGATTGAAGCTCTCATTTGCTTAGCCATCACTTTCAACATTGTCTATTGGATTGGTTATATGTAAGAGTTCAAAAGCAGCAATAATCAAGAACACATCACTAGCTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG : AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG : CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA : CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG : TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG : GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC : TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG : GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCC : GTAAAAGATGTGGCCAGTATACTGCACTGGAAGCTCATGTAGAGACAGAGAGATCGTCAAGCAACAAGAGGATTCCCAGATTTAATCTGTTATTCTTGCTCATGTAGACCAAAAATTGGCCATAATAATCTACAAACACTCTTTTCGGCTACAATTATACTA</gDNA_template>
            <first_frame> L  K  C  K  V  L  G  F  L  A  I  *  Y  *  G  K  S  K  I  Q  H  *  I  S  N  V  Q  T  S  S  T  M  D  *  S  S  H  L  L  S  H  H  F  Q  H  C  L  L  D  W  L  Y  V  R  V  Q  K  Q  Q  *  S  R  T  H  H  *  L  Y  Y  Y  *  L  V  T  K  *  Y  K  G  Q  A  K  A  K  G  S  S  L  R  N  V  N  C  F  H  *  Q  L  P  Y  S  L  P  C  S  S  F  P  *  E  T  Y  S  S  R  C  L  R  K  A  W  Q  L  F  F  F  F  F  Y  S  K  S  H  Q  K  R  A  R  L  C  C  P  Y  S  H  H  Q  P  H  C   : E  R  R  N  G  K  R  I  L  R  S  S  H  C  C  T  R  E  T  P  Q  :  R  E  S  R  T  W  T  S  C  C  S  K  S  *  P  D  H  C  *  I  E  I  S  R  R  R  Q  G  I  R  P  C  *  A  H  E  S  W  L  Y  S  F  Q  D  *  E  I  *  :  H  K  P  S  L  I  W  *  A  S  K  G  P  E  P  *   : V  H  G  F  R  V  L  *  L  T  S  L  P  I  P  C  P  Q  L  P  T  W  *  G  I  H  G  S  *  H  R  Q  H  G  P  C  L  *  Q   : G  Q  V  L  W  S  R  S  S  H  *  I  R  R  S  S  S  *  G  G  E  H  R  C  H  W  P  Q  C  L  W  R  Y  Q  R  S  H  V  T  T  *  R  W  *  *  I  N  :  C  L  Y  *  G  L  G  K  N  L  F  T  C  Q  G  K  G  S  G  R  S  R  R  E  R  I  C  T  S  M  H  S  L  *  E   : G  S  C  E  R  F  T  W  K  S  A  Y  V  S  I  R  E  R  R  I  G  E  E  N  I  G  I  E  G  R  L  L  *  F  R  E  G  W  I  *  A  V  G  T  *  V  R  S  F  S  S  S  F   : R  K  R  C  G  Q  Y  T  A  L  E  A  H  V  E  T  E  R  S  S  S  N  K  R  I  P  R  F  N  L  L  F  L  L  M  *  T  K  N  W  P  *  *  S  T  N  T  L  F  G  Y  N  Y  T  </first_frame>
            <second_frame>  *  N  V  R  F  L  A  S  *  P  Y  D  I  K  A  K  V  R  Y  N  I  E  S  P  T  Y  K  P  H  L  Q  W  I  E  A  L  I  C  L  A  I  T  F  N  I  V  Y  W  I  G  Y  M  *  E  F  K  S  S  N  N  Q  E  H  I  T  S  Y  T  I  T  S  *  *  Q  S  S  I  K  G  K  Q  K  L  K  E  A  H  *  E  M  S  T  A  S  I  N  N  C  L  T  L  S  P  A  Q  A  S  L  K  K  P  T  R  P  V  A  F  A  R  L  G  N  S  S  S  S  S  S  I  P  S  L  I  R  N  E  P  V  F  A  A  P  T  P  I  I  N  P  I  V  :  R  E  E  M  A  K  E  S  Y  D  Q  A  I  A  A  L  E  K  L  L  S :   E  K  A  E  L  G  P  V  A  A  A  R  V  D  Q  I  T  A  E  L  K  S  A  D  G  G  K  A  F  D  P  V  E  H  M  K  A  G  F  I  H  F  K  T  E  K  Y  D :   T  N  P  A  L  Y  G  E  L  A  K  G  Q  S  P  K  :  F  M  V  F  A  C  S  D  S  R  V  C  P  S  H  V  L  N  F  Q  P  G  E  A  F  M  V  R  N  I  A  N  M  V  P  A  Y  D  K  :  V  R  Y  S  G  V  G  A  A  I  E  Y  A  V  L  H  L  K  V  E  N  I  V  V  I  G  H  S  A  C  G  G  I  K  G  L  M  S  L  P  E  D  G  S  E  S  T :   A  F  I  E  D  W  V  K  I  C  L  P  A  K  A  K  V  L  A  D  H  G  G  K  E  F  A  H  Q  C  T  A  C  E  K  :  E  A  V  N  V  S  L  G  N  L  L  T  Y  P  F  V  R  E  G  L  V  K  K  T  L  A  L  K  G  G  Y  Y  D  F  V  K  G  G  F  E  L  W  G  L  E  F  G  L  S  P  P  L  S  :  V  K  D  V  A  S  I  L  H  W  K  L  M  *  R  Q  R  D  R  Q  A  T  R  G  F  P  D  L  I  C  Y  S  C  S  C  R  P  K  I  G  H  N  N  L  Q  T  L  F  S  A  T  I  I  L </second_frame>
            <third_frame>   E  M  *  G  S  W  L  L  S  H  M  I  L  R  Q  K  *  D  T  T  L  N  L  Q  R  T  N  L  I  Y  N  G  L  K  L  S  F  A  *  P  S  L  S  T  L  S  I  G  L  V  I  C  K  S  S  K  A  A  I  I  K  N  T  S  L  A  I  L  L  L  V  S  N  K  V  V  *  R  A  S  K  S  *  R  K  L  I  E  K  C  Q  L  L  P  L  T  I  A  L  L  S  P  L  L  K  L  P  L  R  N  L  L  V  P  L  P  S  Q  G  L  A  T  L  L  L  L  L  L  F  Q  V  S  S  E  T  S  P  S  L  L  P  L  L  P  S  S  T  P  L  * :   E  K  K  W  Q  K  N  P  T  I  K  P  L  L  H  S  R  N  S  S   : A  R  K  Q  N  L  D  Q  L  L  Q  Q  E  L  T  R  S  L  L  N  *  N  Q  Q  T  A  A  R  H  S  T  L  L  S  T  *  K  L  A  L  F  I  S  R  L  R  N  M   : T  Q  T  Q  P  Y  M  V  S  *  Q  R  A  R  A  L  S :   S  W  F  S  R  A  L  T  H  E  S  A  H  P  M  S  S  T  S  N  L  V  R  H  S  W  F  V  T  S  P  T  W  S  L  L  M  T  R :   S  G  T  L  E  *  E  Q  P  L  N  T  P  F  F  I  L  R  W  R  T  S  L  S  L  A  T  V  L  V  E  V  S  K  V  S  C  H  Y  L  K  M  V  V  N  Q   : L  P  L  L  R  I  G  *  K  F  V  Y  L  P  R  Q  R  F  W  P  I  T  E  G  K  N  L  H  I  N  A  Q  L  V  R  R :   K  L  *  T  F  H  L  E  I  C  L  R  I  H  S  *  E  K  D  W  *  R  K  H  W  H  *  R  E  V  T  M  I  S  *  R  V  D  L  S  C  G  D  L  S  S  V  F  L  L  L  F  P :   *  K  M  W  P  V  Y  C  T  G  S  S  C  R  D  R  E  I  V  K  Q  Q  E  D  S  Q  I  *  S  V  I  L  A  H  V  D  Q  K  L  A  I  I  I  Y  K  H  S  F  R  L  Q  L  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0190P16.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28482" stop="28297"/>
                    <exon start="27099" stop="27038"/>
                    <exon start="26665" stop="26522"/>
                    <exon start="26423" stop="26375"/>
                    <exon start="26290" stop="26174"/>
                    <exon start="26088" stop="25949"/>
                    <exon start="25871" stop="25766"/>
                    <exon start="25685" stop="25527"/>
                    <exon start="25303" stop="25262"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1002</number_coding_nucleotides>
                  <number_encoded_amino_acids>334</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMSTASINNCLTLSPAQASLKKPTRPVAFARLGNSSSSSSIPSLIRNEPVFAAPTPIINPIVREEMAKESYDQAIAALEKLLSEKAELGPVAAARVDQITAELKSADGGKAFDPVEHMKAGFIHFKTEKYDTNPALYGELAKGQSPKFMVFACSDSRVCPSHVLNFQPGEAFMVRNIANMVPAYDKVRYSGVGAAIEYAVLHLKVENIVVIGHSACGGIKGLMSLPEDGSESTAFIEDWVKICLPAKAKVLADHGGKEFAHQCTACEKEAVNVSLGNLLTYPFVREGLVKKTLALKGGYYDFVKGGFELWGLEFGLSPPLSVKDVASILHWKLM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="28747" e_stop="28297"/>
            <exon e_start="27099" e_stop="27038"/>
            <exon e_start="26665" e_stop="26522"/>
            <exon e_start="26423" e_stop="26375"/>
            <exon e_start="26290" e_stop="26174"/>
            <exon e_start="26088" e_stop="25949"/>
            <exon e_start="25871" e_stop="25766"/>
            <exon e_start="25685" e_stop="25552"/>
            <exon e_start="25303" e_stop="25213"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.948" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28747" e_stop="28297" e_length="451"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.971">
            <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27099" e_stop="27038" e_length="62"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26665" e_stop="26522" e_length="144"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="26423" e_stop="26375" e_length="49"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.961">
            <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="26290" e_stop="26174" e_length="117"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.979">
            <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="26088" e_stop="25949" e_length="140"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.948">
            <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="25871" e_stop="25766" e_length="106"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="25685" e_stop="25552" e_length="134"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="25551" i_stop="25304" i_length="248"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="25303" e_stop="25213" e_length="91"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28747" stop="28300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28746" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28746" stop="28297"/>
              <exon start="27099" stop="27080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28715" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26560"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28713" stop="28297"/>
              <exon start="27099" stop="27071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28554" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28552" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="26079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28551" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25787"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28551" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28551" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28550" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28550" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28549" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28549" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28549" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740554" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28549" stop="28297"/>
              <exon start="27099" stop="27040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28548" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28547" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28546" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28545" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28545" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28545" stop="28297"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28349" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28347" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28347" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296748" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28347" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="26014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28332" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28318" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28313" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="26025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="26053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27096" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27082" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278639" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26632" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26587" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26583" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26583" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26550" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26545" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26420" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26285" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26280" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26264" stop="26174"/>
              <exon start="26088" stop="25951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26239" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25775" stop="25766"/>
              <exon start="25685" stop="25552"/>
              <exon start="25303" stop="25213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295997" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGAAATGTAAGGTTCTTGGCTTCTTAGCCATATGATATTAAGGCAAAAGTAAGATACAACATTGAATCTCCAACGTACAAACCTCATCTACAATGGATTGAAGCTCTCATTTGCTTAGCCATCACTTTCAACATTGTCTATTGGATTGGTTATATGTAAGAGTTCAAAAGCAGCAATAATCAAGAACACATCACTAGCTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG : AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG : CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA : CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG : TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG : GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC : TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG : GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGA : GTAAAAGATGTGGCCAGTATACTGCACTGGAAGCTCATGTAGAGACAGAGAGATCGTCAAGCAACAAGAGGATTCCCAGATTTAATCTGTT</gDNA_template>
            <first_frame> L  K  C  K  V  L  G  F  L  A  I  *  Y  *  G  K  S  K  I  Q  H  *  I  S  N  V  Q  T  S  S  T  M  D  *  S  S  H  L  L  S  H  H  F  Q  H  C  L  L  D  W  L  Y  V  R  V  Q  K  Q  Q  *  S  R  T  H  H  *  L  Y  Y  Y  *  L  V  T  K  *  Y  K  G  Q  A  K  A  K  G  S  S  L  R  N  V  N  C  F  H  *  Q  L  P  Y  S  L  P  C  S  S  F  P  *  E  T  Y  S  S  R  C  L  R  K  A  W  Q  L  F  F  F  F  F  Y  S  K  S  H  Q  K  R  A  R  L  C  C  P  Y  S  H  H  Q  P  H  C   : E  R  R  N  G  K  R  I  L  R  S  S  H  C  C  T  R  E  T  P  Q  :  R  E  S  R  T  W  T  S  C  C  S  K  S  *  P  D  H  C  *  I  E  I  S  R  R  R  Q  G  I  R  P  C  *  A  H  E  S  W  L  Y  S  F  Q  D  *  E  I  *  :  H  K  P  S  L  I  W  *  A  S  K  G  P  E  P  *   : V  H  G  F  R  V  L  *  L  T  S  L  P  I  P  C  P  Q  L  P  T  W  *  G  I  H  G  S  *  H  R  Q  H  G  P  C  L  *  Q   : G  Q  V  L  W  S  R  S  S  H  *  I  R  R  S  S  S  *  G  G  E  H  R  C  H  W  P  Q  C  L  W  R  Y  Q  R  S  H  V  T  T  *  R  W  *  *  I  N  :  C  L  Y  *  G  L  G  K  N  L  F  T  C  Q  G  K  G  S  G  R  S  R  R  E  R  I  C  T  S  M  H  S  L  *  E   : G  S  C  E  R  F  T  W  K  S  A  Y  V  S  I  R  E  R  R  I  G  E  E  N  I  G  I  E  G  R  L  L  *  F  R  E  G  W  I  *  A  V  G  T  *  :  V  K  D  V  A  S  I  L  H  W  K  L  M  *  R  Q  R  D  R  Q  A  T  R  G  F  P  D  L  I  C  </first_frame>
            <second_frame>  *  N  V  R  F  L  A  S  *  P  Y  D  I  K  A  K  V  R  Y  N  I  E  S  P  T  Y  K  P  H  L  Q  W  I  E  A  L  I  C  L  A  I  T  F  N  I  V  Y  W  I  G  Y  M  *  E  F  K  S  S  N  N  Q  E  H  I  T  S  Y  T  I  T  S  *  *  Q  S  S  I  K  G  K  Q  K  L  K  E  A  H  *  E  M  S  T  A  S  I  N  N  C  L  T  L  S  P  A  Q  A  S  L  K  K  P  T  R  P  V  A  F  A  R  L  G  N  S  S  S  S  S  S  I  P  S  L  I  R  N  E  P  V  F  A  A  P  T  P  I  I  N  P  I  V  :  R  E  E  M  A  K  E  S  Y  D  Q  A  I  A  A  L  E  K  L  L  S :   E  K  A  E  L  G  P  V  A  A  A  R  V  D  Q  I  T  A  E  L  K  S  A  D  G  G  K  A  F  D  P  V  E  H  M  K  A  G  F  I  H  F  K  T  E  K  Y  D :   T  N  P  A  L  Y  G  E  L  A  K  G  Q  S  P  K  :  F  M  V  F  A  C  S  D  S  R  V  C  P  S  H  V  L  N  F  Q  P  G  E  A  F  M  V  R  N  I  A  N  M  V  P  A  Y  D  K  :  V  R  Y  S  G  V  G  A  A  I  E  Y  A  V  L  H  L  K  V  E  N  I  V  V  I  G  H  S  A  C  G  G  I  K  G  L  M  S  L  P  E  D  G  S  E  S  T :   A  F  I  E  D  W  V  K  I  C  L  P  A  K  A  K  V  L  A  D  H  G  G  K  E  F  A  H  Q  C  T  A  C  E  K  :  E  A  V  N  V  S  L  G  N  L  L  T  Y  P  F  V  R  E  G  L  V  K  K  T  L  A  L  K  G  G  Y  Y  D  F  V  K  G  G  F  E  L  W  G  L  E :   *  K  M  W  P  V  Y  C  T  G  S  S  C  R  D  R  E  I  V  K  Q  Q  E  D  S  Q  I  *  S  V </second_frame>
            <third_frame>   E  M  *  G  S  W  L  L  S  H  M  I  L  R  Q  K  *  D  T  T  L  N  L  Q  R  T  N  L  I  Y  N  G  L  K  L  S  F  A  *  P  S  L  S  T  L  S  I  G  L  V  I  C  K  S  S  K  A  A  I  I  K  N  T  S  L  A  I  L  L  L  V  S  N  K  V  V  *  R  A  S  K  S  *  R  K  L  I  E  K  C  Q  L  L  P  L  T  I  A  L  L  S  P  L  L  K  L  P  L  R  N  L  L  V  P  L  P  S  Q  G  L  A  T  L  L  L  L  L  L  F  Q  V  S  S  E  T  S  P  S  L  L  P  L  L  P  S  S  T  P  L  * :   E  K  K  W  Q  K  N  P  T  I  K  P  L  L  H  S  R  N  S  S   : A  R  K  Q  N  L  D  Q  L  L  Q  Q  E  L  T  R  S  L  L  N  *  N  Q  Q  T  A  A  R  H  S  T  L  L  S  T  *  K  L  A  L  F  I  S  R  L  R  N  M   : T  Q  T  Q  P  Y  M  V  S  *  Q  R  A  R  A  L  S :   S  W  F  S  R  A  L  T  H  E  S  A  H  P  M  S  S  T  S  N  L  V  R  H  S  W  F  V  T  S  P  T  W  S  L  L  M  T  R :   S  G  T  L  E  *  E  Q  P  L  N  T  P  F  F  I  L  R  W  R  T  S  L  S  L  A  T  V  L  V  E  V  S  K  V  S  C  H  Y  L  K  M  V  V  N  Q   : L  P  L  L  R  I  G  *  K  F  V  Y  L  P  R  Q  R  F  W  P  I  T  E  G  K  N  L  H  I  N  A  Q  L  V  R  R :   K  L  *  T  F  H  L  E  I  C  L  R  I  H  S  *  E  K  D  W  *  R  K  H  W  H  *  R  E  V  T  M  I  S  *  R  V  D  L  S  C  G  D  L   : S  K  R  C  G  Q  Y  T  A  L  E  A  H  V  E  T  E  R  S  S  S  N  K  R  I  P  R  F  N  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0190P16.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28482" stop="28297"/>
                    <exon start="27099" stop="27038"/>
                    <exon start="26665" stop="26522"/>
                    <exon start="26423" stop="26375"/>
                    <exon start="26290" stop="26174"/>
                    <exon start="26088" stop="25949"/>
                    <exon start="25871" stop="25766"/>
                    <exon start="25685" stop="25552"/>
                    <exon start="25303" stop="25300"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>939</number_coding_nucleotides>
                  <number_encoded_amino_acids>313</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMSTASINNCLTLSPAQASLKKPTRPVAFARLGNSSSSSSIPSLIRNEPVFAAPTPIINPIVREEMAKESYDQAIAALEKLLSEKAELGPVAAARVDQITAELKSADGGKAFDPVEHMKAGFIHFKTEKYDTNPALYGELAKGQSPKFMVFACSDSRVCPSHVLNFQPGEAFMVRNIANMVPAYDKVRYSGVGAAIEYAVLHLKVENIVVIGHSACGGIKGLMSLPEDGSESTAFIEDWVKICLPAKAKVLADHGGKEFAHQCTACEKEAVNVSLGNLLTYPFVREGLVKKTLALKGGYYDFVKGGFELWGLE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="28747" e_stop="28297"/>
            <exon e_start="27099" e_stop="27038"/>
            <exon e_start="26665" e_stop="26522"/>
            <exon e_start="26423" e_stop="26375"/>
            <exon e_start="26290" e_stop="26174"/>
            <exon e_start="26088" e_stop="25962"/>
            <exon e_start="25685" e_stop="25320"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.967"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28747" e_stop="28297" e_length="451"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.971">
            <gDNA_intron_boundary i_start="28296" i_stop="27100" i_length="1197"/>
          </intron>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28516" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28515" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28511" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="26013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28511" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28509" stop="28300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28505" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28502" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28502" stop="28302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28498" stop="28297"/>
              <exon start="27099" stop="27069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28494" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28494" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28491" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28490" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28483" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28482" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470425" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28481" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28476" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28476" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293576" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28476" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28476" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292491" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28476" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28476" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28476" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28476" stop="28297"/>
              <exon start="27099" stop="27081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28474" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28472" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28471" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28471" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28471" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28470" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28462" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="26071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28462" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28459" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28459" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28458" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28456" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28452" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28440" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
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              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="26038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28371" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
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              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="26021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28347" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
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              <exon start="26088" stop="25964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28347" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
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              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296748" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28347" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
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              <exon start="26088" stop="26014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28332" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
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              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28313" stop="28297"/>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="26025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="26053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27096" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27082" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278639" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26632" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26200" stop="26174"/>
              <exon start="26088" stop="25962"/>
              <exon start="25685" stop="25681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725665" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25682" stop="25345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25603" stop="25329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25569" stop="25320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25536" stop="25323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287260" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGAAATGTAAGGTTCTTGGCTTCTTAGCCATATGATATTAAGGCAAAAGTAAGATACAACATTGAATCTCCAACGTACAAACCTCATCTACAATGGATTGAAGCTCTCATTTGCTTAGCCATCACTTTCAACATTGTCTATTGGATTGGTTATATGTAAGAGTTCAAAAGCAGCAATAATCAAGAACACATCACTAGCTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG : AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG : CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA : CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG : TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG : GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATG : GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAAATACGTTTG</gDNA_template>
            <first_frame> L  K  C  K  V  L  G  F  L  A  I  *  Y  *  G  K  S  K  I  Q  H  *  I  S  N  V  Q  T  S  S  T  M  D  *  S  S  H  L  L  S  H  H  F  Q  H  C  L  L  D  W  L  Y  V  R  V  Q  K  Q  Q  *  S  R  T  H  H  *  L  Y  Y  Y  *  L  V  T  K  *  Y  K  G  Q  A  K  A  K  G  S  S  L  R  N  V  N  C  F  H  *  Q  L  P  Y  S  L  P  C  S  S  F  P  *  E  T  Y  S  S  R  C  L  R  K  A  W  Q  L  F  F  F  F  F  Y  S  K  S  H  Q  K  R  A  R  L  C  C  P  Y  S  H  H  Q  P  H  C   : E  R  R  N  G  K  R  I  L  R  S  S  H  C  C  T  R  E  T  P  Q  :  R  E  S  R  T  W  T  S  C  C  S  K  S  *  P  D  H  C  *  I  E  I  S  R  R  R  Q  G  I  R  P  C  *  A  H  E  S  W  L  Y  S  F  Q  D  *  E  I  *  :  H  K  P  S  L  I  W  *  A  S  K  G  P  E  P  *   : V  H  G  F  R  V  L  *  L  T  S  L  P  I  P  C  P  Q  L  P  T  W  *  G  I  H  G  S  *  H  R  Q  H  G  P  C  L  *  Q   : G  Q  V  L  W  S  R  S  S  H  *  I  R  R  S  S  S  *  G  G  E  H  R  C  H  W  P  Q  C  L  W  R  Y  Q  R  S  H  V  T  T  *  R  W :   K  L  *  T  F  H  L  E  I  C  L  R  I  H  S  *  E  K  D  W  *  R  K  H  W  H  *  R  E  V  T  M  I  S  *  R  V  D  L  S  C  G  D  L  S  S  V  F  L  L  L  F  P  Y  E  L  N  S  I  T  I  W  P  S  Q  F  P  S  F  F  F  F  S  P  D  S  T  F  A  S  Q  N  Q  L  C  V  C  C  L  Y  V  L  C  M  Y  E  S  N  M  E  E  H  S  L  L  Y  F  *  N  K  *  N  G  D  Y  F  L  Y  K  Y  V   </first_frame>
            <second_frame>  *  N  V  R  F  L  A  S  *  P  Y  D  I  K  A  K  V  R  Y  N  I  E  S  P  T  Y  K  P  H  L  Q  W  I  E  A  L  I  C  L  A  I  T  F  N  I  V  Y  W  I  G  Y  M  *  E  F  K  S  S  N  N  Q  E  H  I  T  S  Y  T  I  T  S  *  *  Q  S  S  I  K  G  K  Q  K  L  K  E  A  H  *  E  M  S  T  A  S  I  N  N  C  L  T  L  S  P  A  Q  A  S  L  K  K  P  T  R  P  V  A  F  A  R  L  G  N  S  S  S  S  S  S  I  P  S  L  I  R  N  E  P  V  F  A  A  P  T  P  I  I  N  P  I  V  :  R  E  E  M  A  K  E  S  Y  D  Q  A  I  A  A  L  E  K  L  L  S :   E  K  A  E  L  G  P  V  A  A  A  R  V  D  Q  I  T  A  E  L  K  S  A  D  G  G  K  A  F  D  P  V  E  H  M  K  A  G  F  I  H  F  K  T  E  K  Y  D :   T  N  P  A  L  Y  G  E  L  A  K  G  Q  S  P  K  :  F  M  V  F  A  C  S  D  S  R  V  C  P  S  H  V  L  N  F  Q  P  G  E  A  F  M  V  R  N  I  A  N  M  V  P  A  Y  D  K  :  V  R  Y  S  G  V  G  A  A  I  E  Y  A  V  L  H  L  K  V  E  N  I  V  V  I  G  H  S  A  C  G  G  I  K  G  L  M  S  L  P  E  D   : G  S  C  E  R  F  T  W  K  S  A  Y  V  S  I  R  E  R  R  I  G  E  E  N  I  G  I  E  G  R  L  L  *  F  R  E  G  W  I  *  A  V  G  T  *  V  R  S  F  S  S  S  F  R  M  N  L  I  Q  L  P  F  G  P  H  N  F  L  P  F  F  F  F  R  L  T  V  L  L  L  R  K  I  N  C  V  Y  V  V  C  M  Y  Y  V  C  M  N  Q  I  W  K  S  T  R  C  Y  I  S  E  I  N  K  M  E  T  T  F  C  I  N  T  F  </second_frame>
            <third_frame>   E  M  *  G  S  W  L  L  S  H  M  I  L  R  Q  K  *  D  T  T  L  N  L  Q  R  T  N  L  I  Y  N  G  L  K  L  S  F  A  *  P  S  L  S  T  L  S  I  G  L  V  I  C  K  S  S  K  A  A  I  I  K  N  T  S  L  A  I  L  L  L  V  S  N  K  V  V  *  R  A  S  K  S  *  R  K  L  I  E  K  C  Q  L  L  P  L  T  I  A  L  L  S  P  L  L  K  L  P  L  R  N  L  L  V  P  L  P  S  Q  G  L  A  T  L  L  L  L  L  L  F  Q  V  S  S  E  T  S  P  S  L  L  P  L  L  P  S  S  T  P  L  * :   E  K  K  W  Q  K  N  P  T  I  K  P  L  L  H  S  R  N  S  S   : A  R  K  Q  N  L  D  Q  L  L  Q  Q  E  L  T  R  S  L  L  N  *  N  Q  Q  T  A  A  R  H  S  T  L  L  S  T  *  K  L  A  L  F  I  S  R  L  R  N  M   : T  Q  T  Q  P  Y  M  V  S  *  Q  R  A  R  A  L  S :   S  W  F  S  R  A  L  T  H  E  S  A  H  P  M  S  S  T  S  N  L  V  R  H  S  W  F  V  T  S  P  T  W  S  L  L  M  T  R :   S  G  T  L  E  *  E  Q  P  L  N  T  P  F  F  I  L  R  W  R  T  S  L  S  L  A  T  V  L  V  E  V  S  K  V  S  C  H  Y  L  K  M  :  E  A  V  N  V  S  L  G  N  L  L  T  Y  P  F  V  R  E  G  L  V  K  K  T  L  A  L  K  G  G  Y  Y  D  F  V  K  G  G  F  E  L  W  G  L  E  F  G  L  S  P  P  L  S  V  *  T  *  F  N  Y  H  L  A  L  T  I  S  F  L  F  F  F  F  A  *  Q  Y  F  C  F  A  K  S  T  V  C  M  L  F  V  C  I  M  Y  V  *  I  K  Y  G  R  A  L  V  V  I  F  L  K  *  I  K  W  R  L  L  F  V  *  I  R  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0190P16.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28482" stop="28297"/>
                    <exon start="27099" stop="27038"/>
                    <exon start="26665" stop="26522"/>
                    <exon start="26423" stop="26375"/>
                    <exon start="26290" stop="26174"/>
                    <exon start="26088" stop="25962"/>
                    <exon start="25685" stop="25588"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>780</number_coding_nucleotides>
                  <number_encoded_amino_acids>260</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMSTASINNCLTLSPAQASLKKPTRPVAFARLGNSSSSSSIPSLIRNEPVFAAPTPIINPIVREEMAKESYDQAIAALEKLLSEKAELGPVAAARVDQITAELKSADGGKAFDPVEHMKAGFIHFKTEKYDTNPALYGELAKGQSPKFMVFACSDSRVCPSHVLNFQPGEAFMVRNIANMVPAYDKVRYSGVGAAIEYAVLHLKVENIVVIGHSACGGIKGLMSLPEDGSCERFTWKSAYVSIRERRIGEENIGIEGRLL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0190P16.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25551" stop="25321"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VRSFSSSFRMNLIQLPFGPHNFLPFFFFRLTVLLLRKINCVYVVCMYYVCMNQIWKSTRCYISEINKMETTFCINTF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="28747" e_stop="28297"/>
            <exon e_start="27108" e_stop="27038"/>
            <exon e_start="26665" e_stop="26522"/>
            <exon e_start="26423" e_stop="26375"/>
            <exon e_start="26290" e_stop="26174"/>
            <exon e_start="26088" e_stop="25949"/>
            <exon e_start="25871" e_stop="25766"/>
            <exon e_start="25685" e_stop="25151"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.764" e_score="0.998"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.948" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.927"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="28747" e_stop="28297" e_length="451"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.764">
            <gDNA_intron_boundary i_start="28296" i_stop="27109" i_length="1188"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27108" e_stop="27038" e_length="71"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="27037" i_stop="26666" i_length="372"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26665" e_stop="26522" e_length="144"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="26521" i_stop="26424" i_length="98"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="26423" e_stop="26375" e_length="49"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.961">
            <gDNA_intron_boundary i_start="26374" i_stop="26291" i_length="84"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="26290" e_stop="26174" e_length="117"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.979">
            <gDNA_intron_boundary i_start="26173" i_stop="26089" i_length="85"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="26088" e_stop="25949" e_length="140"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.948">
            <gDNA_intron_boundary i_start="25948" i_stop="25872" i_length="77"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="25871" e_stop="25766" e_length="106"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="25765" i_stop="25686" i_length="80"/>
          </intron>
          <exon e_serial="8" e_score="0.927">
            <gDNA_exon_boundary e_start="25685" e_stop="25151" e_length="535"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28747" stop="28300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28542" stop="28301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28542" stop="28363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28529" stop="28297"/>
              <exon start="27108" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28509" stop="28300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28502" stop="28302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="26025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="26053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27099" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27096" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27084" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27084" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738380" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27082" stop="27038"/>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26665" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278639" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26632" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26622" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26587" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26583" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26583" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26552" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26551" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26550" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26545" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26534" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26531" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26531" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26530" stop="26522"/>
              <exon start="26423" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26420" stop="26375"/>
              <exon start="26290" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26287" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26285" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26280" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26264" stop="26174"/>
              <exon start="26088" stop="25951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26261" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402991" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26255" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26240" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26239" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26236" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26214" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26213" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26209" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26209" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26199" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26191" stop="26174"/>
              <exon start="26088" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26082" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26078" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285134" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26044" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26044" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321065" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26038" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26006" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293777" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26004" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26004" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26003" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25993" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25992" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25976" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25960" stop="25949"/>
              <exon start="25871" stop="25766"/>
              <exon start="25685" stop="25360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294938" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25868" stop="25766"/>
              <exon start="25685" stop="25334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25864" stop="25766"/>
              <exon start="25685" stop="25398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25856" stop="25766"/>
              <exon start="25685" stop="25346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278439" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25848" stop="25766"/>
              <exon start="25685" stop="25329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25807" stop="25766"/>
              <exon start="25685" stop="25319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25804" stop="25766"/>
              <exon start="25685" stop="25345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25803" stop="25766"/>
              <exon start="25685" stop="25430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25801" stop="25766"/>
              <exon start="25685" stop="25345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25798" stop="25766"/>
              <exon start="25685" stop="25334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25796" stop="25766"/>
              <exon start="25685" stop="25329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365325" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25775" stop="25766"/>
              <exon start="25685" stop="25349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25682" stop="25345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25603" stop="25329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25569" stop="25320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25536" stop="25323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287260" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGAAATGTAAGGTTCTTGGCTTCTTAGCCATATGATATTAAGGCAAAAGTAAGATACAACATTGAATCTCCAACGTACAAACCTCATCTACAATGGATTGAAGCTCTCATTTGCTTAGCCATCACTTTCAACATTGTCTATTGGATTGGTTATATGTAAGAGTTCAAAAGCAGCAATAATCAAGAACACATCACTAGCTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG : AATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG : CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA : CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG : TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG : GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC : TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG : GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAAATACGTTTGTGGTGGGCTTTGGTAGGTAAAAGATGTGGCCAGTATACTGCACTGGAAGCTCATGTAGAGACAGAGAGATCGTCAAGCAACAAGAGGATTCCCAGATTTAATCTGTTATTCTTGCTCATGTAGACCAAAAATTGGCCATAATAATCTACAAACACTCTTTTCGGCTACA</gDNA_template>
            <first_frame> L  K  C  K  V  L  G  F  L  A  I  *  Y  *  G  K  S  K  I  Q  H  *  I  S  N  V  Q  T  S  S  T  M  D  *  S  S  H  L  L  S  H  H  F  Q  H  C  L  L  D  W  L  Y  V  R  V  Q  K  Q  Q  *  S  R  T  H  H  *  L  Y  Y  Y  *  L  V  T  K  *  Y  K  G  Q  A  K  A  K  G  S  S  L  R  N  V  N  C  F  H  *  Q  L  P  Y  S  L  P  C  S  S  F  P  *  E  T  Y  S  S  R  C  L  R  K  A  W  Q  L  F  F  F  F  F  Y  S  K  S  H  Q  K  R  A  R  L  C  C  P  Y  S  H  H  Q  P  H  C   : E  F  A  E  R  R  N  G  K  R  I  L  R  S  S  H  C  C  T  R  E  T  P  Q  :  R  E  S  R  T  W  T  S  C  C  S  K  S  *  P  D  H  C  *  I  E  I  S  R  R  R  Q  G  I  R  P  C  *  A  H  E  S  W  L  Y  S  F  Q  D  *  E  I  *  :  H  K  P  S  L  I  W  *  A  S  K  G  P  E  P  *   : V  H  G  F  R  V  L  *  L  T  S  L  P  I  P  C  P  Q  L  P  T  W  *  G  I  H  G  S  *  H  R  Q  H  G  P  C  L  *  Q   : G  Q  V  L  W  S  R  S  S  H  *  I  R  R  S  S  S  *  G  G  E  H  R  C  H  W  P  Q  C  L  W  R  Y  Q  R  S  H  V  T  T  *  R  W  *  *  I  N  :  C  L  Y  *  G  L  G  K  N  L  F  T  C  Q  G  K  G  S  G  R  S  R  R  E  R  I  C  T  S  M  H  S  L  *  E   : G  S  C  E  R  F  T  W  K  S  A  Y  V  S  I  R  E  R  R  I  G  E  E  N  I  G  I  E  G  R  L  L  *  F  R  E  G  W  I  *  A  V  G  T  *  V  R  S  F  S  S  S  F  R  M  N  L  I  Q  L  P  F  G  P  H  N  F  L  P  F  F  F  F  R  L  T  V  L  L  L  R  K  I  N  C  V  Y  V  V  C  M  Y  Y  V  C  M  N  Q  I  W  K  S  T  R  C  Y  I  S  E  I  N  K  M  E  T  T  F  C  I  N  T  F  V  V  G  F  G  R  *  K  M  W  P  V  Y  C  T  G  S  S  C  R  D  R  E  I  V  K  Q  Q  E  D  S  Q  I  *  S  V  I  L  A  H  V  D  Q  K  L  A  I  I  I  Y  K  H  S  F  R  L   </first_frame>
            <second_frame>  *  N  V  R  F  L  A  S  *  P  Y  D  I  K  A  K  V  R  Y  N  I  E  S  P  T  Y  K  P  H  L  Q  W  I  E  A  L  I  C  L  A  I  T  F  N  I  V  Y  W  I  G  Y  M  *  E  F  K  S  S  N  N  Q  E  H  I  T  S  Y  T  I  T  S  *  *  Q  S  S  I  K  G  K  Q  K  L  K  E  A  H  *  E  M  S  T  A  S  I  N  N  C  L  T  L  S  P  A  Q  A  S  L  K  K  P  T  R  P  V  A  F  A  R  L  G  N  S  S  S  S  S  S  I  P  S  L  I  R  N  E  P  V  F  A  A  P  T  P  I  I  N  P  I  V  :  N  L  Q  R  E  E  M  A  K  E  S  Y  D  Q  A  I  A  A  L  E  K  L  L  S :   E  K  A  E  L  G  P  V  A  A  A  R  V  D  Q  I  T  A  E  L  K  S  A  D  G  G  K  A  F  D  P  V  E  H  M  K  A  G  F  I  H  F  K  T  E  K  Y  D :   T  N  P  A  L  Y  G  E  L  A  K  G  Q  S  P  K  :  F  M  V  F  A  C  S  D  S  R  V  C  P  S  H  V  L  N  F  Q  P  G  E  A  F  M  V  R  N  I  A  N  M  V  P  A  Y  D  K  :  V  R  Y  S  G  V  G  A  A  I  E  Y  A  V  L  H  L  K  V  E  N  I  V  V  I  G  H  S  A  C  G  G  I  K  G  L  M  S  L  P  E  D  G  S  E  S  T :   A  F  I  E  D  W  V  K  I  C  L  P  A  K  A  K  V  L  A  D  H  G  G  K  E  F  A  H  Q  C  T  A  C  E  K  :  E  A  V  N  V  S  L  G  N  L  L  T  Y  P  F  V  R  E  G  L  V  K  K  T  L  A  L  K  G  G  Y  Y  D  F  V  K  G  G  F  E  L  W  G  L  E  F  G  L  S  P  P  L  S  V  *  T  *  F  N  Y  H  L  A  L  T  I  S  F  L  F  F  F  F  A  *  Q  Y  F  C  F  A  K  S  T  V  C  M  L  F  V  C  I  M  Y  V  *  I  K  Y  G  R  A  L  V  V  I  F  L  K  *  I  K  W  R  L  L  F  V  *  I  R  L  W  W  A  L  V  G  K  R  C  G  Q  Y  T  A  L  E  A  H  V  E  T  E  R  S  S  S  N  K  R  I  P  R  F  N  L  L  F  L  L  M  *  T  K  N  W  P  *  *  S  T  N  T  L  F  G  Y  </second_frame>
            <third_frame>   E  M  *  G  S  W  L  L  S  H  M  I  L  R  Q  K  *  D  T  T  L  N  L  Q  R  T  N  L  I  Y  N  G  L  K  L  S  F  A  *  P  S  L  S  T  L  S  I  G  L  V  I  C  K  S  S  K  A  A  I  I  K  N  T  S  L  A  I  L  L  L  V  S  N  K  V  V  *  R  A  S  K  S  *  R  K  L  I  E  K  C  Q  L  L  P  L  T  I  A  L  L  S  P  L  L  K  L  P  L  R  N  L  L  V  P  L  P  S  Q  G  L  A  T  L  L  L  L  L  L  F  Q  V  S  S  E  T  S  P  S  L  L  P  L  L  P  S  S  T  P  L  * :   I  C  R  E  K  K  W  Q  K  N  P  T  I  K  P  L  L  H  S  R  N  S  S   : A  R  K  Q  N  L  D  Q  L  L  Q  Q  E  L  T  R  S  L  L  N  *  N  Q  Q  T  A  A  R  H  S  T  L  L  S  T  *  K  L  A  L  F  I  S  R  L  R  N  M   : T  Q  T  Q  P  Y  M  V  S  *  Q  R  A  R  A  L  S :   S  W  F  S  R  A  L  T  H  E  S  A  H  P  M  S  S  T  S  N  L  V  R  H  S  W  F  V  T  S  P  T  W  S  L  L  M  T  R :   S  G  T  L  E  *  E  Q  P  L  N  T  P  F  F  I  L  R  W  R  T  S  L  S  L  A  T  V  L  V  E  V  S  K  V  S  C  H  Y  L  K  M  V  V  N  Q   : L  P  L  L  R  I  G  *  K  F  V  Y  L  P  R  Q  R  F  W  P  I  T  E  G  K  N  L  H  I  N  A  Q  L  V  R  R :   K  L  *  T  F  H  L  E  I  C  L  R  I  H  S  *  E  K  D  W  *  R  K  H  W  H  *  R  E  V  T  M  I  S  *  R  V  D  L  S  C  G  D  L  S  S  V  F  L  L  L  F  P  Y  E  L  N  S  I  T  I  W  P  S  Q  F  P  S  F  F  F  F  S  P  D  S  T  F  A  S  Q  N  Q  L  C  V  C  C  L  Y  V  L  C  M  Y  E  S  N  M  E  E  H  S  L  L  Y  F  *  N  K  *  N  G  D  Y  F  L  Y  K  Y  V  C  G  G  L  W  *  V  K  D  V  A  S  I  L  H  W  K  L  M  *  R  Q  R  D  R  Q  A  T  R  G  F  P  D  L  I  C  Y  S  C  S  C  R  P  K  I  G  H  N  N  L  Q  T  L  F  S  A  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0190P16.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28482" stop="28297"/>
                    <exon start="27108" stop="27038"/>
                    <exon start="26665" stop="26522"/>
                    <exon start="26423" stop="26375"/>
                    <exon start="26290" stop="26174"/>
                    <exon start="26088" stop="25949"/>
                    <exon start="25871" stop="25766"/>
                    <exon start="25685" stop="25521"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>975</number_coding_nucleotides>
                  <number_encoded_amino_acids>325</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMSTASINNCLTLSPAQASLKKPTRPVAFARLGNSSSSSSIPSLIRNEPVFAAPTPIINPIVNLQREEMAKESYDQAIAALEKLLSEKAELGPVAAARVDQITAELKSADGGKAFDPVEHMKAGFIHFKTEKYDTNPALYGELAKGQSPKFMVFACSDSRVCPSHVLNFQPGEAFMVRNIANMVPAYDKVRYSGVGAAIEYAVLHLKVENIVVIGHSACGGIKGLMSLPEDGSESTAFIEDWVKICLPAKAKVLADHGGKEFAHQCTACEKEAVNVSLGNLLTYPFVREGLVKKTLALKGGYYDFVKGGFELWGLEFGLSPPLSV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0190P16.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="5" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25551" stop="25300"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VRSFSSSFRMNLIQLPFGPHNFLPFFFFRLTVLLLRKINCVYVVCMYYVCMNQIWKSTRCYISEINKMETTFCINTFVVGFGR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="25356" PGL_stop="25580"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25356" e_stop="25580"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="25356" e_stop="25580" e_length="225"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25356" stop="25580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289268" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTATTTCAGAAATATAACAACGAGTGCTCTTCCATATTTGATTCATACATACATAATACATACAAACAACATACACACAGTTGATTTTGCGAAGCAAAAGTACTGTCAGGCGAAAAAAAAAAAAAGGAAGGAAATTGTGAGGGCCAAATGGTAATTGAATTAAGTTCATACGGAAAGAGGAGGAGAAAGACCGAACTCAAGTCCCCACAGCTCAAATCCACCCTT</gDNA_template>
            <first_frame> L  F  Q  K  Y  N  N  E  C  S  S  I  F  D  S  Y  I  H  N  T  Y  K  Q  H  T  H  S  *  F  C  E  A  K  V  L  S  G  E  K  K  K  K  E  G  N  C  E  G  Q  M  V  I  E  L  S  S  Y  G  K  R  R  R  K  T  E  L  K  S  P  Q  L  K  S  T  L </first_frame>
            <second_frame>  Y  F  R  N  I  T  T  S  A  L  P  Y  L  I  H  T  Y  I  I  H  T  N  N  I  H  T  V  D  F  A  K  Q  K  Y  C  Q  A  K  K  K  K  R  K  E  I  V  R  A  K  W  *  L  N  *  V  H  T  E  R  G  G  E  R  P  N  S  S  P  H  S  S  N  P  P   </second_frame>
            <third_frame>   I  S  E  I  *  Q  R  V  L  F  H  I  *  F  I  H  T  *  Y  I  Q  T  T  Y  T  Q  L  I  L  R  S  K  S  T  V  R  R  K  K  K  K  G  R  K  L  *  G  P  N  G  N  *  I  K  F  I  R  K  E  E  E  K  D  R  T  Q  V  P  T  A  Q  I  H  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0190P16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="36442" PGL_stop="35423"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36442" e_stop="35423"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.922">
            <gDNA_exon_boundary e_start="36442" e_stop="35423" e_length="1020"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36442" stop="35721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36442" stop="35887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36108" stop="35423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36108" stop="35428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35964" stop="35463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354769" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATGAAATTACAACTACTCACATGCAGGAAGACGAATTTTTTTCTCCGAGCTTTAGTAGCTACTCTTCAAATAGAGTGGCCGAGATTGCCGGAAAAATCTCCGATGAAATTAAGCGTGATTCTCAGGTGGTAGAAGAGAACGTTGACGGTGCCGATGGAGATGAAGATTTTGAATTCTCTTTGGTTTGTGAAAATCCAGAGGATTCGGTCGGCGTATTCCCCTTCGACCGTCCTATTTACCCCGTTTTCAACCGCGATCTGATACCAAACGATGTTTCTTATGGCGTAGATCGAGAAGGTGTTAACGGTGAATCGTCGGAAAACGTCAATAGTTCAGTTCAAGTTTCGTTAAAGGATTTATTCTTAGAAGAACGGGAACCGCTGTCGTCGTCATCTTCCGAGGTCGATGAGTTGGAGAGTGTACCTCCGGGAACGTATTGTGTATGGAAGCCGAATATAACCGAGCCTTCACCAAGCAGATGTAAGAAGAGTAATTCAACGGGATCGGCGTTTAAGCGGTGGAATATCCGAGATTTGATGCGCCGGAGCAACAGTGACGGTAAGGACAGTTTTTTATTTCTGACGCCGGAAAAAGGATTGAGAAATGAAACATCCAAAGCAAAGGACTCAGCGGAAGCGTCTAAAATTGCCGGAAAATTGAAGGCAAAGGGCAACAGTAGCAGCGGTAACAAAACATCTTCGATGACGGACGTTTATTTACGGAACCAAGCGGCAAAGGAAATGGATAAGAATAGGCGCAAATCATATTTACCATACCGGCGAGATCTGGTAGGTTTTTTCGCTAGTGCCAGCAATATTGGTAGAACTTTTCCTCCTTTTTAACAACCTTCCATTTTTTAATCAAGTGTTTGTAAATATCTAAATGAAAGAACATGTGCGATGATTCCTGAATGATTTAGTTGTTATGCTCCCATTTGTTTAAAGGATGATCATCCACCTCGATAATAATTTTCGATGAATTTTTCATATTATCTATGAATTAAATTTGATAATTTTTA</gDNA_template>
            <first_frame> L  *  N  Y  N  Y  S  H  A  G  R  R  I  F  F  S  E  L  *  *  L  L  F  K  *  S  G  R  D  C  R  K  N  L  R  *  N  *  A  *  F  S  G  G  R  R  E  R  *  R  C  R  W  R  *  R  F  *  I  L  F  G  L  *  K  S  R  G  F  G  R  R  I  P  L  R  P  S  Y  L  P  R  F  Q  P  R  S  D  T  K  R  C  F  L  W  R  R  S  R  R  C  *  R  *  I  V  G  K  R  Q  *  F  S  S  S  F  V  K  G  F  I  L  R  R  T  G  T  A  V  V  V  I  F  R  G  R  *  V  G  E  C  T  S  G  N  V  L  C  M  E  A  E  Y  N  R  A  F  T  K  Q  M  *  E  E  *  F  N  G  I  G  V  *  A  V  E  Y  P  R  F  D  A  P  E  Q  Q  *  R  *  G  Q  F  F  I  S  D  A  G  K  R  I  E  K  *  N  I  Q  S  K  G  L  S  G  S  V  *  N  C  R  K  I  E  G  K  G  Q  Q  *  Q  R  *  Q  N  I  F  D  D  G  R  L  F  T  E  P  S  G  K  G  N  G  *  E  *  A  Q  I  I  F  T  I  P  A  R  S  G  R  F  F  R  *  C  Q  Q  Y  W  *  N  F  S  S  F  L  T  T  F  H  F  L  I  K  C  L  *  I  S  K  *  K  N  M  C  D  D  S  *  M  I  *  L  L  C  S  H  L  F  K  G  *  S  S  T  S  I  I  I  F  D  E  F  F  I  L  S  M  N  *  I  *  *  F  L </first_frame>
            <second_frame>  Y  E  I  T  T  T  H  M  Q  E  D  E  F  F  S  P  S  F  S  S  Y  S  S  N  R  V  A  E  I  A  G  K  I  S  D  E  I  K  R  D  S  Q  V  V  E  E  N  V  D  G  A  D  G  D  E  D  F  E  F  S  L  V  C  E  N  P  E  D  S  V  G  V  F  P  F  D  R  P  I  Y  P  V  F  N  R  D  L  I  P  N  D  V  S  Y  G  V  D  R  E  G  V  N  G  E  S  S  E  N  V  N  S  S  V  Q  V  S  L  K  D  L  F  L  E  E  R  E  P  L  S  S  S  S  S  E  V  D  E  L  E  S  V  P  P  G  T  Y  C  V  W  K  P  N  I  T  E  P  S  P  S  R  C  K  K  S  N  S  T  G  S  A  F  K  R  W  N  I  R  D  L  M  R  R  S  N  S  D  G  K  D  S  F  L  F  L  T  P  E  K  G  L  R  N  E  T  S  K  A  K  D  S  A  E  A  S  K  I  A  G  K  L  K  A  K  G  N  S  S  S  G  N  K  T  S  S  M  T  D  V  Y  L  R  N  Q  A  A  K  E  M  D  K  N  R  R  K  S  Y  L  P  Y  R  R  D  L  V  G  F  F  A  S  A  S  N  I  G  R  T  F  P  P  F  *  Q  P  S  I  F  *  S  S  V  C  K  Y  L  N  E  R  T  C  A  M  I  P  E  *  F  S  C  Y  A  P  I  C  L  K  D  D  H  P  P  R  *  *  F  S  M  N  F  S  Y  Y  L  *  I  K  F  D  N  F   </second_frame>
            <third_frame>   M  K  L  Q  L  L  T  C  R  K  T  N  F  F  L  R  A  L  V  A  T  L  Q  I  E  W  P  R  L  P  E  K  S  P  M  K  L  S  V  I  L  R  W  *  K  R  T  L  T  V  P  M  E  M  K  I  L  N  S  L  W  F  V  K  I  Q  R  I  R  S  A  Y  S  P  S  T  V  L  F  T  P  F  S  T  A  I  *  Y  Q  T  M  F  L  M  A  *  I  E  K  V  L  T  V  N  R  R  K  T  S  I  V  Q  F  K  F  R  *  R  I  Y  S  *  K  N  G  N  R  C  R  R  H  L  P  R  S  M  S  W  R  V  Y  L  R  E  R  I  V  Y  G  S  R  I  *  P  S  L  H  Q  A  D  V  R  R  V  I  Q  R  D  R  R  L  S  G  G  I  S  E  I  *  C  A  G  A  T  V  T  V  R  T  V  F  Y  F  *  R  R  K  K  D  *  E  M  K  H  P  K  Q  R  T  Q  R  K  R  L  K  L  P  E  N  *  R  Q  R  A  T  V  A  A  V  T  K  H  L  R  *  R  T  F  I  Y  G  T  K  R  Q  R  K  W  I  R  I  G  A  N  H  I  Y  H  T  G  E  I  W  *  V  F  S  L  V  P  A  I  L  V  E  L  F  L  L  F  N  N  L  P  F  F  N  Q  V  F  V  N  I  *  M  K  E  H  V  R  *  F  L  N  D  L  V  V  M  L  P  F  V  *  R  M  I  I  H  L  D  N  N  F  R  *  I  F  H  I  I  Y  E  L  N  L  I  I  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0190P16.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36441" stop="35599"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>840</number_coding_nucleotides>
                  <number_encoded_amino_acids>280</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YEITTTHMQEDEFFSPSFSSYSSNRVAEIAGKISDEIKRDSQVVEENVDGADGDEDFEFSLVCENPEDSVGVFPFDRPIYPVFNRDLIPNDVSYGVDREGVNGESSENVNSSVQVSLKDLFLEEREPLSSSSSEVDELESVPPGTYCVWKPNITEPSPSRCKKSNSTGSAFKRWNIRDLMRRSNSDGKDSFLFLTPEKGLRNETSKAKDSAEASKIAGKLKAKGNSSSGNKTSSMTDVYLRNQAAKEMDKNRRKSYLPYRRDLVGFFASASNIGRTFPPF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="39463" PGL_stop="40094"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39463" e_stop="40094"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="39463" e_stop="40094" e_length="632"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39463" stop="40094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425597" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAAATCAAATCCTTTACCAAAAGGGATGTTTTTAGAATGTTACAATGATAATAAATTCCACCTCAAAATGTTAGTTTCTACTTTCCTAGCCCTATTCACTCAGTATTGTTATATATCTACTTTACACAACTTGATTAACTTTACAAATTAAACAGTCAATTATAAACTACAAACTAAATATTAAAGATCTATCTTTTGTTTGCCTCTGTCACTGGACTCCTCAGAAAAGTCACTGTTTAAACTTTCGAATTGTTTCCTTTGAATCTGATCATGGTACATAGGATGGAACTGTGTTTGAAATGCCCTGTACGTAACGTATGGTAACAAAGTGGCAACGACAACCAGGAGTGTGACAAGCCAAAAGAAAGGACTCGGAGCACAAGCTTCCACAAGAATTTTGTACGCGGTTGTAGATATTATAGGCGAAAGAGAGCCATAAACAACTAAAAACACGTACCAAATGGCAATGCTGCCCCAAATGAAGAAGTGCTGAATCCAAGTGAAGTAGTTGATAGAGATTGCCATTTGACAATTGACTGTCCACACCACACACGTGTACATCATCACCCCGAGGACTCCGTAGTCAACTGGTTGACCATCTTTTCGGAATACTTGATGCACGAGTGAATTG</gDNA_template>
            <first_frame> L  N  Q  I  L  Y  Q  K  G  C  F  *  N  V  T  M  I  I  N  S  T  S  K  C  *  F  L  L  S  *  P  Y  S  L  S  I  V  I  Y  L  L  Y  T  T  *  L  T  L  Q  I  K  Q  S  I  I  N  Y  K  L  N  I  K  D  L  S  F  V  C  L  C  H  W  T  P  Q  K  S  H  C  L  N  F  R  I  V  S  F  E  S  D  H  G  T  *  D  G  T  V  F  E  M  P  C  T  *  R  M  V  T  K  W  Q  R  Q  P  G  V  *  Q  A  K  R  K  D  S  E  H  K  L  P  Q  E  F  C  T  R  L  *  I  L  *  A  K  E  S  H  K  Q  L  K  T  R  T  K  W  Q  C  C  P  K  *  R  S  A  E  S  K  *  S  S  *  *  R  L  P  F  D  N  *  L  S  T  P  H  T  C  T  S  S  P  R  G  L  R  S  Q  L  V  D  H  L  F  G  I  L  D  A  R  V  N   </first_frame>
            <second_frame>  *  I  K  S  F  T  K  R  D  V  F  R  M  L  Q  *  *  *  I  P  P  Q  N  V  S  F  Y  F  P  S  P  I  H  S  V  L  L  Y  I  Y  F  T  Q  L  D  *  L  Y  K  L  N  S  Q  L  *  T  T  N  *  I  L  K  I  Y  L  L  F  A  S  V  T  G  L  L  R  K  V  T  V  *  T  F  E  L  F  P  L  N  L  I  M  V  H  R  M  E  L  C  L  K  C  P  V  R  N  V  W  *  Q  S  G  N  D  N  Q  E  C  D  K  P  K  E  R  T  R  S  T  S  F  H  K  N  F  V  R  G  C  R  Y  Y  R  R  K  R  A  I  N  N  *  K  H  V  P  N  G  N  A  A  P  N  E  E  V  L  N  P  S  E  V  V  D  R  D  C  H  L  T  I  D  C  P  H  H  T  R  V  H  H  H  P  E  D  S  V  V  N  W  L  T  I  F  S  E  Y  L  M  H  E  *  I  </second_frame>
            <third_frame>   K  S  N  P  L  P  K  G  M  F  L  E  C  Y  N  D  N  K  F  H  L  K  M  L  V  S  T  F  L  A  L  F  T  Q  Y  C  Y  I  S  T  L  H  N  L  I  N  F  T  N  *  T  V  N  Y  K  L  Q  T  K  Y  *  R  S  I  F  C  L  P  L  S  L  D  S  S  E  K  S  L  F  K  L  S  N  C  F  L  *  I  *  S  W  Y  I  G  W  N  C  V  *  N  A  L  Y  V  T  Y  G  N  K  V  A  T  T  T  R  S  V  T  S  Q  K  K  G  L  G  A  Q  A  S  T  R  I  L  Y  A  V  V  D  I  I  G  E  R  E  P  *  T  T  K  N  T  Y  Q  M  A  M  L  P  Q  M  K  K  C  *  I  Q  V  K  *  L  I  E  I  A  I  *  Q  L  T  V  H  T  T  H  V  Y  I  I  T  P  R  T  P  *  S  T  G  *  P  S  F  R  N  T  *  C  T  S  E  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0190P16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="44133" PGL_stop="40821"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44133" e_stop="44023"/>
            <exon e_start="43892" e_stop="43616"/>
            <exon e_start="43503" e_stop="43415"/>
            <exon e_start="43332" e_stop="43224"/>
            <exon e_start="43136" e_stop="42927"/>
            <exon e_start="42808" e_stop="42675"/>
            <exon e_start="41435" e_stop="41337"/>
            <exon e_start="41012" e_stop="40821"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.847" e_score="0.991"/>
          <exon-intron don_prob="0.936" acc_prob="0.997" e_score="0.978"/>
          <exon-intron don_prob="0.529" acc_prob="0.544" e_score="0.978"/>
          <exon-intron don_prob="0.998" acc_prob="0.977" e_score="0.991"/>
          <exon-intron don_prob="0.407" acc_prob="0.689" e_score="0.983"/>
          <exon-intron don_prob="1.000" acc_prob="0.868" e_score="0.985"/>
          <exon-intron don_prob="0.999" acc_prob="0.921" e_score="1.000"/>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="44133" e_stop="44023" e_length="111"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.847">
            <gDNA_intron_boundary i_start="44022" i_stop="43893" i_length="130"/>
          </intron>
          <exon e_serial="2" e_score="0.978">
            <gDNA_exon_boundary e_start="43892" e_stop="43616" e_length="277"/>
          </exon>
          <intron i_serial="2" don_prob="0.936" acc_prob="0.997">
            <gDNA_intron_boundary i_start="43615" i_stop="43504" i_length="112"/>
          </intron>
          <exon e_serial="3" e_score="0.978">
            <gDNA_exon_boundary e_start="43503" e_stop="43415" e_length="89"/>
          </exon>
          <intron i_serial="3" don_prob="0.529" acc_prob="0.544">
            <gDNA_intron_boundary i_start="43414" i_stop="43333" i_length="82"/>
          </intron>
          <exon e_serial="4" e_score="0.991">
            <gDNA_exon_boundary e_start="43332" e_stop="43224" e_length="109"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.977">
            <gDNA_intron_boundary i_start="43223" i_stop="43137" i_length="87"/>
          </intron>
          <exon e_serial="5" e_score="0.983">
            <gDNA_exon_boundary e_start="43136" e_stop="42927" e_length="210"/>
          </exon>
          <intron i_serial="5" don_prob="0.407" acc_prob="0.689">
            <gDNA_intron_boundary i_start="42926" i_stop="42809" i_length="118"/>
          </intron>
          <exon e_serial="6" e_score="0.985">
            <gDNA_exon_boundary e_start="42808" e_stop="42675" e_length="134"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.868">
            <gDNA_intron_boundary i_start="42674" i_stop="41436" i_length="1239"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="41435" e_stop="41337" e_length="99"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.921">
            <gDNA_intron_boundary i_start="41336" i_stop="41013" i_length="324"/>
          </intron>
          <exon e_serial="8" e_score="0.917">
            <gDNA_exon_boundary e_start="41012" e_stop="40821" e_length="192"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44133" stop="44023"/>
              <exon start="43892" stop="43616"/>
              <exon start="43503" stop="43415"/>
              <exon start="43332" stop="43224"/>
              <exon start="43136" stop="43017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44133" stop="44023"/>
              <exon start="43892" stop="43616"/>
              <exon start="43503" stop="43415"/>
              <exon start="43332" stop="43224"/>
              <exon start="43136" stop="43021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454982" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43029" stop="42927"/>
              <exon start="42808" stop="42675"/>
              <exon start="41435" stop="41337"/>
              <exon start="41012" stop="40821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E565350" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCATATCAGCTCCTTCATGTCTTAGAGTTCAGTAGTTCGCGGAAGCGAATGTCTGTAATTGTAAAAAATGCTGAGAACCAGTTGTTGCTCCTCAGCAAAGGTGCAGACAG : TGTGATGTTCGAACAACTTTCAAAAGATGGGCGTGTCTTTGAGGGTATAACAAGGGAACATCTTAAACAATATGCTGAAGCAGGATTGCGAACTCTTGTCGTAGCTTACCGTGAGCTTGATGAGAAAGAGTTCCAATCATGGGAACAAGAGTTTTTGAATGCCCAAGCTTCTGTAACAGCAGATAGAGATGCTTTGGTGGATGTTGCTGCTCAGAAGATTGAACGGGACTTAATTCTCCTTGGTGTCACTGCTGTTGAGGACAAACTTCAAAAAGGG : GTCCCTGAATGCATTGATAAGCTTGCAAAAGCTGGAATTAAGATTTGGGTCTTAACTGGTGATAAGATGGAAACGGCTATCAATATTGG : GTATGCTTGTAGTTTATTAAGACCAGATATGAGGCAAATCATAATTACTTTAGATTCTCAAGACATATTGGACTTGGAAAACCGAGGAAACAAGGAGACTATAGCAAAG : GCTTCACATGATAGCATTACAAAGCAAATACGGGAGGGAATGTCACAAGTAAGCTCAAGCAGAGGAACTACTGCATCATTTGGTTTGATCATTGATGGCAAATCATTGTCATTTGCTCTTGACAAAAAACTAGAAAAATCGTTCTTGGAGCTTGCAATAAATTGTGCATCTGTTATTTGCTGCCGCTCCACTCCTAAACAAAAAGCTCTT : ATATGCAGGTTACCAGACTGGTGAAAGTTGAAACACACCGAACTACATTAGCAATTGGGGATGGGGCAAATGATGTAAGCATGCTACAAGAGGCTGATGTTGGGGTTGGCATCAGTGGTGTTGAAGGAATGCAG : GCTGTCATGTCAAGTGATTATGCAATAGCTCAATTCCGTTTTCTTGAGCGCTTGTTATTGGTCCATGGCCACTGGTGCTACAGGAGAATATCGATGATG : CTATGCTACTTCTTTTACAAGAACATCGCCTTCGGGTTGACCCTTTTCTGGTTCGAGGGCTTTGCTTCTTTCTCTGGCCGACCTGCTTATAATGACTGGTATATGTCATTATATAATGTGTTCTTCACATCGCTTCCTGTGATTGCTCTCGGTGTCTTTGATCAGGATGTTTCTGCCCGCCTATGTCTCGAG</gDNA_template>
            <first_frame> I  I  S  A  P  S  C  L  R  V  Q  *  F  A  E  A  N  V  C  N  C  K  K  C  *  E  P  V  V  A  P  Q  Q  R  C  R  Q  :  C  D  V  R  T  T  F  K  R  W  A  C  L  *  G  Y  N  K  G  T  S  *  T  I  C  *  S  R  I  A  N  S  C  R  S  L  P  *  A  *  *  E  R  V  P  I  M  G  T  R  V  F  E  C  P  S  F  C  N  S  R  *  R  C  F  G  G  C  C  C  S  E  D  *  T  G  L  N  S  P  W  C  H  C  C  *  G  Q  T  S  K  R   : G  P  *  M  H  *  *  A  C  K  S  W  N  *  D  L  G  L  N  W  *  *  D  G  N  G  Y  Q  Y  W  :  V  C  L  *  F  I  K  T  R  Y  E  A  N  H  N  Y  F  R  F  S  R  H  I  G  L  G  K  P  R  K  Q  G  D  Y  S  K   : G  F  T  *  *  H  Y  K  A  N  T  G  G  N  V  T  S  K  L  K  Q  R  N  Y  C  I  I  W  F  D  H  *  W  Q  I  I  V  I  C  S  *  Q  K  T  R  K  I  V  L  G  A  C  N  K  L  C  I  C  Y  L  L  P  L  H  S  *  T  K  S  S   : Y  M  Q  V  T  R  L  V  K  V  E  T  H  R  T  T  L  A  I  G  D  G  A  N  D  V  S  M  L  Q  E  A  D  V  G  V  G  I  S  G  V  E  G  M  Q  :  A  V  M  S  S  D  Y  A  I  A  Q  F  R  F  L  E  R  L  L  L  V  H  G  H  W  C  Y  R  R  I  S  M  M  :  L  C  Y  F  F  Y  K  N  I  A  F  G  L  T  L  F  W  F  E  G  F  A  S  F  S  G  R  P  A  Y  N  D  W  Y  M  S  L  Y  N  V  F  F  T  S  L  P  V  I  A  L  G  V  F  D  Q  D  V  S  A  R  L  C  L  E </first_frame>
            <second_frame>  S  Y  Q  L  L  H  V  L  E  F  S  S  S  R  K  R  M  S  V  I  V  K  N  A  E  N  Q  L  L  L  L  S  K  G  A  D  S :   V  M  F  E  Q  L  S  K  D  G  R  V  F  E  G  I  T  R  E  H  L  K  Q  Y  A  E  A  G  L  R  T  L  V  V  A  Y  R  E  L  D  E  K  E  F  Q  S  W  E  Q  E  F  L  N  A  Q  A  S  V  T  A  D  R  D  A  L  V  D  V  A  A  Q  K  I  E  R  D  L  I  L  L  G  V  T  A  V  E  D  K  L  Q  K  G  :  V  P  E  C  I  D  K  L  A  K  A  G  I  K  I  W  V  L  T  G  D  K  M  E  T  A  I  N  I  G :   Y  A  C  S  L  L  R  P  D  M  R  Q  I  I  I  T  L  D  S  Q  D  I  L  D  L  E  N  R  G  N  K  E  T  I  A  K  :  A  S  H  D  S  I  T  K  Q  I  R  E  G  M  S  Q  V  S  S  S  R  G  T  T  A  S  F  G  L  I  I  D  G  K  S  L  S  F  A  L  D  K  K  L  E  K  S  F  L  E  L  A  I  N  C  A  S  V  I  C  C  R  S  T  P  K  Q  K  A  L  :  I  C  R  L  P  D  W  *  K  L  K  H  T  E  L  H  *  Q  L  G  M  G  Q  M  M  *  A  C  Y  K  R  L  M  L  G  L  A  S  V  V  L  K  E  C  R :   L  S  C  Q  V  I  M  Q  *  L  N  S  V  F  L  S  A  C  Y  W  S  M  A  T  G  A  T  G  E  Y  R  *  C :   Y  A  T  S  F  T  R  T  S  P  S  G  *  P  F  S  G  S  R  A  L  L  L  S  L  A  D  L  L  I  M  T  G  I  C  H  Y  I  M  C  S  S  H  R  F  L  *  L  L  S  V  S  L  I  R  M  F  L  P  A  Y  V  S   </second_frame>
            <third_frame>   H  I  S  S  F  M  S  *  S  S  V  V  R  G  S  E  C  L  *  L  *  K  M  L  R  T  S  C  C  S  S  A  K  V  Q  T   : V  *  C  S  N  N  F  Q  K  M  G  V  S  L  R  V  *  Q  G  N  I  L  N  N  M  L  K  Q  D  C  E  L  L  S  *  L  T  V  S  L  M  R  K  S  S  N  H  G  N  K  S  F  *  M  P  K  L  L  *  Q  Q  I  E  M  L  W  W  M  L  L  L  R  R  L  N  G  T  *  F  S  L  V  S  L  L  L  R  T  N  F  K  K  G :   S  L  N  A  L  I  S  L  Q  K  L  E  L  R  F  G  S  *  L  V  I  R  W  K  R  L  S  I  L   : G  M  L  V  V  Y  *  D  Q  I  *  G  K  S  *  L  L  *  I  L  K  T  Y  W  T  W  K  T  E  E  T  R  R  L  *  Q  R :   L  H  M  I  A  L  Q  S  K  Y  G  R  E  C  H  K  *  A  Q  A  E  E  L  L  H  H  L  V  *  S  L  M  A  N  H  C  H  L  L  L  T  K  N  *  K  N  R  S  W  S  L  Q  *  I  V  H  L  L  F  A  A  A  P  L  L  N  K  K  L  L :   Y  A  G  Y  Q  T  G  E  S  *  N  T  P  N  Y  I  S  N  W  G  W  G  K  *  C  K  H  A  T  R  G  *  C  W  G  W  H  Q  W  C  *  R  N  A   : G  C  H  V  K  *  L  C  N  S  S  I  P  F  S  *  A  L  V  I  G  P  W  P  L  V  L  Q  E  N  I  D  D   : A  M  L  L  L  L  Q  E  H  R  L  R  V  D  P  F  L  V  R  G  L  C  F  F  L  W  P  T  C  L  *  *  L  V  Y  V  I  I  *  C  V  L  H  I  A  S  C  D  C  S  R  C  L  *  S  G  C  F  C  P  P  M  S  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0190P16.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44132" stop="44023"/>
                    <exon start="43892" stop="43616"/>
                    <exon start="43503" stop="43415"/>
                    <exon start="43332" stop="43224"/>
                    <exon start="43136" stop="42927"/>
                    <exon start="42808" stop="42785"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>816</number_coding_nucleotides>
                  <number_encoded_amino_acids>272</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SYQLLHVLEFSSSRKRMSVIVKNAENQLLLLSKGADSVMFEQLSKDGRVFEGITREHLKQYAEAGLRTLVVAYRELDEKEFQSWEQEFLNAQASVTADRDALVDVAAQKIERDLILLGVTAVEDKLQKGVPECIDKLAKAGIKIWVLTGDKMETAINIGYACSLLRPDMRQIIITLDSQDILDLENRGNKETIAKASHDSITKQIREGMSQVSSSRGTTASFGLIIDGKSLSFALDKKLEKSFLELAINCASVICCRSTPKQKALICRLPDW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="52875" PGL_stop="63196"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52875" e_stop="53106"/>
            <exon e_start="53582" e_stop="54245"/>
            <exon e_start="54943" e_stop="55197"/>
            <exon e_start="55557" e_stop="55681"/>
            <exon e_start="55800" e_stop="55844"/>
            <exon e_start="55928" e_stop="56009"/>
            <exon e_start="56110" e_stop="56178"/>
            <exon e_start="56245" e_stop="56415"/>
            <exon e_start="56520" e_stop="56585"/>
            <exon e_start="57716" e_stop="57784"/>
            <exon e_start="57883" e_stop="58008"/>
            <exon e_start="58210" e_stop="58283"/>
            <exon e_start="59054" e_stop="59320"/>
            <exon e_start="59921" e_stop="59997"/>
            <exon e_start="60358" e_stop="60434"/>
            <exon e_start="61705" e_stop="61830"/>
            <exon e_start="61901" e_stop="61943"/>
            <exon e_start="62067" e_stop="62113"/>
            <exon e_start="62459" e_stop="62520"/>
            <exon e_start="62591" e_stop="62642"/>
            <exon e_start="62830" e_stop="63196"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.891" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.925" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.931" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.898" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.456" acc_prob="0.844" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.611" acc_prob="0.798" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.886" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.954" e_score="0.984"/>
          <exon-intron don_prob="0.972" acc_prob="0.956" e_score="1.000"/>
          <exon-only e_score="0.959"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52875" e_stop="53106" e_length="232"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.891">
            <gDNA_intron_boundary i_start="53107" i_stop="53581" i_length="475"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="53582" e_stop="54245" e_length="664"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.996">
            <gDNA_intron_boundary i_start="54246" i_stop="54942" i_length="697"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="54943" e_stop="55197" e_length="255"/>
          </exon>
          <intron i_serial="3" don_prob="0.925" acc_prob="0.996">
            <gDNA_intron_boundary i_start="55198" i_stop="55556" i_length="359"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="55557" e_stop="55681" e_length="125"/>
          </exon>
          <intron i_serial="4" don_prob="0.931" acc_prob="0.997">
            <gDNA_intron_boundary i_start="55682" i_stop="55799" i_length="118"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="55800" e_stop="55844" e_length="45"/>
          </exon>
          <intron i_serial="5" don_prob="0.988" acc_prob="0.898">
            <gDNA_intron_boundary i_start="55845" i_stop="55927" i_length="83"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="55928" e_stop="56009" e_length="82"/>
          </exon>
          <intron i_serial="6" don_prob="0.985" acc_prob="0.999">
            <gDNA_intron_boundary i_start="56010" i_stop="56109" i_length="100"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="56110" e_stop="56178" e_length="69"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.985">
            <gDNA_intron_boundary i_start="56179" i_stop="56244" i_length="66"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="56245" e_stop="56415" e_length="171"/>
          </exon>
          <intron i_serial="8" don_prob="0.949" acc_prob="0.997">
            <gDNA_intron_boundary i_start="56416" i_stop="56519" i_length="104"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="56520" e_stop="56585" e_length="66"/>
          </exon>
          <intron i_serial="9" don_prob="0.456" acc_prob="0.844">
            <gDNA_intron_boundary i_start="56586" i_stop="57715" i_length="1130"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="57716" e_stop="57784" e_length="69"/>
          </exon>
          <intron i_serial="10" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="57785" i_stop="57882" i_length="98"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="57883" e_stop="58008" e_length="126"/>
          </exon>
          <intron i_serial="11" don_prob="0.997" acc_prob="0.987">
            <gDNA_intron_boundary i_start="58009" i_stop="58209" i_length="201"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="58210" e_stop="58283" e_length="74"/>
          </exon>
          <intron i_serial="12" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="58284" i_stop="59053" i_length="770"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="59054" e_stop="59320" e_length="267"/>
          </exon>
          <intron i_serial="13" don_prob="0.995" acc_prob="0.961">
            <gDNA_intron_boundary i_start="59321" i_stop="59920" i_length="600"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="59921" e_stop="59997" e_length="77"/>
          </exon>
          <intron i_serial="14" don_prob="0.611" acc_prob="0.798">
            <gDNA_intron_boundary i_start="59998" i_stop="60357" i_length="360"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="60358" e_stop="60434" e_length="77"/>
          </exon>
          <intron i_serial="15" don_prob="0.994" acc_prob="0.984">
            <gDNA_intron_boundary i_start="60435" i_stop="61704" i_length="1270"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="61705" e_stop="61830" e_length="126"/>
          </exon>
          <intron i_serial="16" don_prob="0.993" acc_prob="0.997">
            <gDNA_intron_boundary i_start="61831" i_stop="61900" i_length="70"/>
          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="61901" e_stop="61943" e_length="43"/>
          </exon>
          <intron i_serial="17" don_prob="0.886" acc_prob="0.991">
            <gDNA_intron_boundary i_start="61944" i_stop="62066" i_length="123"/>
          </intron>
          <exon e_serial="18" e_score="1.000">
            <gDNA_exon_boundary e_start="62067" e_stop="62113" e_length="47"/>
          </exon>
          <intron i_serial="18" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="62114" i_stop="62458" i_length="345"/>
          </intron>
          <exon e_serial="19" e_score="0.984">
            <gDNA_exon_boundary e_start="62459" e_stop="62520" e_length="62"/>
          </exon>
          <intron i_serial="19" don_prob="0.990" acc_prob="0.954">
            <gDNA_intron_boundary i_start="62521" i_stop="62590" i_length="70"/>
          </intron>
          <exon e_serial="20" e_score="1.000">
            <gDNA_exon_boundary e_start="62591" e_stop="62642" e_length="52"/>
          </exon>
          <intron i_serial="20" don_prob="0.972" acc_prob="0.956">
            <gDNA_intron_boundary i_start="62643" i_stop="62829" i_length="187"/>
          </intron>
          <exon e_serial="21" e_score="0.959">
            <gDNA_exon_boundary e_start="62830" e_stop="63196" e_length="367"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52875" stop="53106"/>
              <exon start="53582" stop="53878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52881" stop="53106"/>
              <exon start="53582" stop="53967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52883" stop="53106"/>
              <exon start="53582" stop="53767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52896" stop="53106"/>
              <exon start="53582" stop="54079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52898" stop="53106"/>
              <exon start="53582" stop="54079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52920" stop="53106"/>
              <exon start="53582" stop="54002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52995" stop="53106"/>
              <exon start="53582" stop="54245"/>
              <exon start="54943" stop="54999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53041" stop="53106"/>
              <exon start="53582" stop="54083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54116" stop="54245"/>
              <exon start="54943" stop="55197"/>
              <exon start="55557" stop="55681"/>
              <exon start="55800" stop="55844"/>
              <exon start="55928" stop="56009"/>
              <exon start="56110" stop="56138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574304" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54154" stop="54245"/>
              <exon start="54943" stop="55197"/>
              <exon start="55557" stop="55681"/>
              <exon start="55800" stop="55844"/>
              <exon start="55928" stop="56009"/>
              <exon start="56110" stop="56139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54955" stop="55197"/>
              <exon start="55557" stop="55681"/>
              <exon start="55800" stop="55844"/>
              <exon start="55928" stop="56009"/>
              <exon start="56110" stop="56178"/>
              <exon start="56245" stop="56259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55143" stop="55197"/>
              <exon start="55557" stop="55681"/>
              <exon start="55800" stop="55844"/>
              <exon start="55928" stop="56009"/>
              <exon start="56110" stop="56178"/>
              <exon start="56245" stop="56415"/>
              <exon start="56520" stop="56544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55948" stop="56009"/>
              <exon start="56110" stop="56178"/>
              <exon start="56245" stop="56415"/>
              <exon start="56520" stop="56585"/>
              <exon start="57716" stop="57784"/>
              <exon start="57883" stop="58008"/>
              <exon start="58210" stop="58253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56117" stop="56178"/>
              <exon start="56245" stop="56415"/>
              <exon start="56520" stop="56585"/>
              <exon start="57716" stop="57784"/>
              <exon start="57883" stop="58008"/>
              <exon start="58210" stop="58283"/>
              <exon start="59054" stop="59164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56169" stop="56178"/>
              <exon start="56245" stop="56415"/>
              <exon start="56520" stop="56585"/>
              <exon start="57716" stop="57784"/>
              <exon start="57883" stop="58008"/>
              <exon start="58210" stop="58283"/>
              <exon start="59054" stop="59166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56533" stop="56585"/>
              <exon start="57716" stop="57784"/>
              <exon start="57883" stop="58008"/>
              <exon start="58210" stop="58283"/>
              <exon start="59054" stop="59155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57716" stop="57784"/>
              <exon start="57883" stop="58008"/>
              <exon start="58210" stop="58283"/>
              <exon start="59054" stop="59320"/>
              <exon start="59921" stop="59997"/>
              <exon start="60358" stop="60434"/>
              <exon start="61705" stop="61830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57729" stop="57784"/>
              <exon start="57883" stop="58008"/>
              <exon start="58210" stop="58283"/>
              <exon start="59054" stop="59320"/>
              <exon start="59921" stop="59997"/>
              <exon start="60358" stop="60419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57937" stop="58008"/>
              <exon start="58210" stop="58283"/>
              <exon start="59054" stop="59320"/>
              <exon start="59921" stop="59997"/>
              <exon start="60358" stop="60434"/>
              <exon start="61705" stop="61830"/>
              <exon start="61901" stop="61943"/>
              <exon start="62067" stop="62113"/>
              <exon start="62459" stop="62473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59058" stop="59320"/>
              <exon start="59921" stop="59997"/>
              <exon start="60358" stop="60434"/>
              <exon start="61705" stop="61830"/>
              <exon start="61901" stop="61915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59190" stop="59320"/>
              <exon start="59921" stop="59997"/>
              <exon start="60358" stop="60434"/>
              <exon start="61705" stop="61830"/>
              <exon start="61901" stop="61943"/>
              <exon start="62067" stop="62113"/>
              <exon start="62459" stop="62520"/>
              <exon start="62591" stop="62613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59921" stop="59997"/>
              <exon start="60358" stop="60434"/>
              <exon start="61705" stop="61830"/>
              <exon start="61901" stop="61943"/>
              <exon start="62067" stop="62113"/>
              <exon start="62459" stop="62489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61794" stop="61830"/>
              <exon start="61901" stop="61943"/>
              <exon start="62067" stop="62113"/>
              <exon start="62459" stop="62520"/>
              <exon start="62591" stop="62642"/>
              <exon start="62830" stop="63067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411432" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62497" stop="62520"/>
              <exon start="62591" stop="62642"/>
              <exon start="62830" stop="63114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62616" stop="62642"/>
              <exon start="62830" stop="63196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406633" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCTTCAATAAACGGCGAAGATTCGATCAGAGTAGCCGGGGACGACTAACTGCAACGTAACAACTATAATATCTTCCGATTCCTAATCATCAATGGCGGAGTAGTCCAACCGTTTCATCCCCAAATTTATCTTCCATACGTGTTGTTGGATTTCGATTTTCCGGTCAAGGTCTAGTCAGATTCAGTCCTCGAAATTCATCTTTTGCATATCACCTCCCATCGGAACCCTAG : ATTGCTTTGTCAGTTCTGGAGTGTACTCAGGCATCAGCTTCTAGTGGTAGATTGCATCTAGTCTTCGACTATTTTGGTACTCCACTGCATTTCGGGATTGTACTCAGGTCGAATATTAGATTATCTCTGTGAGCAGTCTCACTGAATATATTGGCCAGCGTTCATCTGTCTTATTTTCACGGACATTTTCAAGTTTTTTCAGAACCGTTGACGGTAATATTGTGTTTGAAGGTGGTCAAGGCAAGTCATTACGATCAAGGTTGTTGGGTTATAAAACTTGTCAATCTGAGAGATAAAAGTCGACCAATTATATCTAGTGCATTTTAGGAATTTATTCCTGTTGAAGTTATTGGTAGGGGAAGTTCATCTCATGAGGTAGCTGGAGCTATAAAATATCTCGTGGATCACAAGCAAAATGTTATATAATTGGAAGAAGCCTCACATTCTTTTCTCTAAAGTGCTTGATGGTTTTTATATTGCAATATAACTAGCAATGATGGAACAGCTATCGGAGAAAAAGTTCCCTGTCAACGCAAAAGATTATACACTATATGAGGAAGTTGGAGATGGTGTCAGTGCAACTGTGTATCGGGCTCTGTGCATTCCTCTTAATGAAATTGTTGCAATCAAGGTTCTAGATTTGGAGAAGTGCAACAATGATCTG : GATGGAATCCGGAGAGAGGTGCAGACCATGATCTTGATTGATCATCCAAATGTATTGCGTGCACACTGCTCATTCACTGCAGGTCACAGCCTTTGGGTTGTCATGCCATTCATGGCTGGAGGATCTTGCCTTCATATCATGAAATCTTCTTATCCTGATGGTTTTGAAGAGCCTGTAATTGCTACATTATTGCGCGAGGTCCTCAAAGCCCTTGTATATCTTCATTACCATGGACACATCCATAGAGATGTAAAG : GCTGGGAACATTTTGATTGATTCAAATGGTGCTATTAAATTGGCAGATTTTGGAGTTGCTGCTTGCATGTTTGATACTGGTGATAGGCAGCGTTCAAGAAATACTTTTGTTGGAACTCCGTGCTG : GATGGCTCCCGAAGTGATGCAGCAACTACATGGATATGATTTTAA : AGCAGATATATGGTCATTTGGAATAACAGCCCTTGAACTTGCTCATGGTCATGCACCATTCTCCAAGTACCCACCCATGAAG : GTTCTGCTGATGACCCTACAGAATGCACCTCCAGGCCTGGACTATGAACGGGACAAGAGATTCTCTAAG : TCTTTTAAAGAAATGGTTGCTGCTTGCTTAGTAAAAGATCCAAAGAAGCGTCCGTCTTCTGAGAAGCTTTTGAAGCACCCTTTCTTTAAACAAGCACGAGGACATGATTATTTGGCACGTACAATCCTTGATGGCCTTCCACCTCTAGGTGATCGTTTTAGGATGCTTAAG : GCTAGAGAAGCAGATTATCTTTTACAGAACCAGGCAATGTATGAGGACAAGGACCATTTATCACAG : CAAGAGTATATTCGTGGTATCAGTGCTTGGAATTTCAATCTGGAGGATCTGAAGAACCAAGCTGCTCTT : CTTCCAGATTTTGACGACATTCCAGATGCTGAAGATTCAAGTAACAGGGGGAAGCTAAGGGAGGGGAATGGTGACGTTGGTTCTGTAGTAGAAAGGCATAATCAGTCGAGTGTCCTATCTCACGAG : GATGAGATGAATGGCAATCATGATTTGGATGGTTCTCTTGCTGCATTTCCTATTAAGCCTCTTCAAGCACTCAA : GGGATGTTTTGATATGTGTGAAGATGACATAACTGCTAGTAGTCCAAGTTGGGAAGATACTATGCAATCAGAGTCTAATCAGCAGAATGATATGCTATCACTAGCAAAAGTTGAGGACCAAGATGGTGGAAAAGATGATGGTGAGAATCTGCGACAGAGTAGCTCCTTGCCACGTTCTGTTATTCCTGGGCATAAAAAGTTTTTTAGTGGTTCACTGCTACAGGATAACGCTCTTTCACCCAAAAAAGTTGTTACTGATGGAGAGAG : GGAATATCAACATCCAAAGTACCAGTCTGAGCGAAACTATAGCGGCCCACTGCAGTATCGACATAAAAAAGATTTAG : GAGAAGATTCATCAGAAGGAGCTATTGTCCAACGCAAGGGACGTTTTCAAGTCACATCAGCAGATCTAAGTCCCAAG : GAACCTACAAGCTATTTCCTTAACCCAGTTCAGGGAGGTTCTACTAGTGCAATTAATCTAGGTCTAGCAGCTGCTTCACTACTTCCAACATTGCAATGCATTCTACAGCAGAATACTTTGCAAAGG : GAGGAATTAGTGAAGCTGATCAAGTTCGCAGAGCGAGGATCTG : TCAACCCCACAGACTTAGCTGAAGCTGGGACCAGTGATCTCCCGCAG : ATGCCTGCTACTTCTGTTAGAGAGAGAGAACTGCAATCAATGGTCATTCAATTGCAACAAAG : CATTGGAAGTCTTGTGGAAGAGTTGCAGAGACAAAAGATGAAAAATGTTCAG : TTGGAAAAGAAATTGAATCGCTGATAAAAACTAGAGGATATGAAGGCTACACTACATGGTTGGTTAAGTTACTACCCATGGTTGTGCTGGGGCACATCGTTAAGTTACTTGGCGAGTGGGTGGTTGTATTTTTTGTGTACCATATGTGTGAATGTTAAGTAGGCACCCAAATTTTGAGATGCTATTCATTGTCAGAATCTTGATTATCTATTGTAATATACCAATTGGGTATTGTATTTAAGTTGTCCTTCAATATTAATTGAAATTCTAGGAGCAAAAAAAATGCAGCTTGTGTAAATCACCCTTGCGAAACCCAGAACCTTGTTCCGAAATAAACCTAATAATAAACCTCTTAAGGAGGAGTTTG</gDNA_template>
            <first_frame> S  L  Q  *  T  A  K  I  R  S  E  *  P  G  T  T  N  C  N  V  T  T  I  I  S  S  D  S  *  S  S  M  A  E  *  S  N  R  F  I  P  K  F  I  F  H  T  C  C  W  I  S  I  F  R  S  R  S  S  Q  I  Q  S  S  K  F  I  F  C  I  S  P  P  I  G  T  L   : D  C  F  V  S  S  G  V  Y  S  G  I  S  F  *  W  *  I  A  S  S  L  R  L  F  W  Y  S  T  A  F  R  D  C  T  Q  V  E  Y  *  I  I  S  V  S  S  L  T  E  Y  I  G  Q  R  S  S  V  L  F  S  R  T  F  S  S  F  F  R  T  V  D  G  N  I  V  F  E  G  G  Q  G  K  S  L  R  S  R  L  L  G  Y  K  T  C  Q  S  E  R  *  K  S  T  N  Y  I  *  C  I  L  G  I  Y  S  C  *  S  Y  W  *  G  K  F  I  S  *  G  S  W  S  Y  K  I  S  R  G  S  Q  A  K  C  Y  I  I  G  R  S  L  T  F  F  S  L  K  C  L  M  V  F  I  L  Q  Y  N  *  Q  *  W  N  S  Y  R  R  K  S  S  L  S  T  Q  K  I  I  H  Y  M  R  K  L  E  M  V  S  V  Q  L  C  I  G  L  C  A  F  L  L  M  K  L  L  Q  S  R  F  *  I  W  R  S  A  T  M  I  W :   M  E  S  G  E  R  C  R  P  *  S  *  L  I  I  Q  M  Y  C  V  H  T  A  H  S  L  Q  V  T  A  F  G  L  S  C  H  S  W  L  E  D  L  A  F  I  S  *  N  L  L  I  L  M  V  L  K  S  L  *  L  L  H  Y  C  A  R  S  S  K  P  L  Y  I  F  I  T  M  D  T  S  I  E  M  *  R :   L  G  T  F  *  L  I  Q  M  V  L  L  N  W  Q  I  L  E  L  L  L  A  C  L  I  L  V  I  G  S  V  Q  E  I  L  L  L  E  L  R  A   : G  W  L  P  K  *  C  S  N  Y  M  D  M  I  L   : K  Q  I  Y  G  H  L  E  *  Q  P  L  N  L  L  M  V  M  H  H  S  P  S  T  H  P  *  R :   F  C  *  *  P  Y  R  M  H  L  Q  A  W  T  M  N  G  T  R  D  S  L  S :   L  L  K  K  W  L  L  L  A  *  *  K  I  Q  R  S  V  R  L  L  R  S  F  *  S  T  L  S  L  N  K  H  E  D  M  I  I  W  H  V  Q  S  L  M  A  F  H  L  *  V  I  V  L  G  C  L  R :   L  E  K  Q  I  I  F  Y  R  T  R  Q  C  M  R  T  R  T  I  Y  H  S :   K  S  I  F  V  V  S  V  L  G  I  S  I  W  R  I  *  R  T  K  L  L  F :   F  Q  I  L  T  T  F  Q  M  L  K  I  Q  V  T  G  G  S  *  G  R  G  M  V  T  L  V  L  *  *  K  G  I  I  S  R  V  S  Y  L  T  R :   M  R  *  M  A  I  M  I  W  M  V  L  L  L  H  F  L  L  S  L  F  K  H  S   : R  D  V  L  I  C  V  K  M  T  *  L  L  V  V  Q  V  G  K  I  L  C  N  Q  S  L  I  S  R  M  I  C  Y  H  *  Q  K  L  R  T  K  M  V  E  K  M  M  V  R  I  C  D  R  V  A  P  C  H  V  L  L  F  L  G  I  K  S  F  L  V  V  H  C  Y  R  I  T  L  F  H  P  K  K  L  L  L  M  E  R   : G  N  I  N  I  Q  S  T  S  L  S  E  T  I  A  A  H  C  S  I  D  I  K  K  I  *  :  E  K  I  H  Q  K  E  L  L  S  N  A  R  D  V  F  K  S  H  Q  Q  I  *  V  P  R :   N  L  Q  A  I  S  L  T  Q  F  R  E  V  L  L  V  Q  L  I  *  V  *  Q  L  L  H  Y  F  Q  H  C  N  A  F  Y  S  R  I  L  C  K  G :   R  N  *  *  S  *  S  S  S  Q  S  E  D  L  :  S  T  P  Q  T  *  L  K  L  G  P  V  I  S  R  R :   C  L  L  L  L  L  E  R  E  N  C  N  Q  W  S  F  N  C  N  K   : A  L  E  V  L  W  K  S  C  R  D  K  R  *  K  M  F  S :   W  K  R  N  *  I  A  D  K  N  *  R  I  *  R  L  H  Y  M  V  G  *  V  T  T  H  G  C  A  G  A  H  R  *  V  T  W  R  V  G  G  C  I  F  C  V  P  Y  V  *  M  L  S  R  H  P  N  F  E  M  L  F  I  V  R  I  L  I  I  Y  C  N  I  P  I  G  Y  C  I  *  V  V  L  Q  Y  *  L  K  F  *  E  Q  K  K  C  S  L  C  K  S  P  L  R  N  P  E  P  C  S  E  I  N  L  I  I  N  L  L  R  R  S  L </first_frame>
            <second_frame>  L  F  N  K  R  R  R  F  D  Q  S  S  R  G  R  L  T  A  T  *  Q  L  *  Y  L  P  I  P  N  H  Q  W  R  S  S  P  T  V  S  S  P  N  L  S  S  I  R  V  V  G  F  R  F  S  G  Q  G  L  V  R  F  S  P  R  N  S  S  F  A  Y  H  L  P  S  E  P  *  :  I  A  L  S  V  L  E  C  T  Q  A  S  A  S  S  G  R  L  H  L  V  F  D  Y  F  G  T  P  L  H  F  G  I  V  L  R  S  N  I  R  L  S  L  *  A  V  S  L  N  I  L  A  S  V  H  L  S  Y  F  H  G  H  F  Q  V  F  S  E  P  L  T  V  I  L  C  L  K  V  V  K  A  S  H  Y  D  Q  G  C  W  V  I  K  L  V  N  L  R  D  K  S  R  P  I  I  S  S  A  F  *  E  F  I  P  V  E  V  I  G  R  G  S  S  S  H  E  V  A  G  A  I  K  Y  L  V  D  H  K  Q  N  V  I  *  L  E  E  A  S  H  S  F  L  *  S  A  *  W  F  L  Y  C  N  I  T  S  N  D  G  T  A  I  G  E  K  V  P  C  Q  R  K  R  L  Y  T  I  *  G  S  W  R  W  C  Q  C  N  C  V  S  G  S  V  H  S  S  *  *  N  C  C  N  Q  G  S  R  F  G  E  V  Q  Q  *  S   : G  W  N  P  E  R  G  A  D  H  D  L  D  *  S  S  K  C  I  A  C  T  L  L  I  H  C  R  S  Q  P  L  G  C  H  A  I  H  G  W  R  I  L  P  S  Y  H  E  I  F  L  S  *  W  F  *  R  A  C  N  C  Y  I  I  A  R  G  P  Q  S  P  C  I  S  S  L  P  W  T  H  P  *  R  C  K   : G  W  E  H  F  D  *  F  K  W  C  Y  *  I  G  R  F  W  S  C  C  L  H  V  *  Y  W  *  *  A  A  F  K  K  Y  F  C  W  N  S  V  L  :  D  G  S  R  S  D  A  A  T  T  W  I  *  F  *  :  S  R  Y  M  V  I  W  N  N  S  P  *  T  C  S  W  S  C  T  I  L  Q  V  P  T  H  E   : G  S  A  D  D  P  T  E  C  T  S  R  P  G  L  *  T  G  Q  E  I  L  *   : V  F  *  R  N  G  C  C  L  L  S  K  R  S  K  E  A  S  V  F  *  E  A  F  E  A  P  F  L  *  T  S  T  R  T  *  L  F  G  T  Y  N  P  *  W  P  S  T  S  R  *  S  F  *  D  A  *   : G  *  R  S  R  L  S  F  T  E  P  G  N  V  *  G  Q  G  P  F  I  T   : A  R  V  Y  S  W  Y  Q  C  L  E  F  Q  S  G  G  S  E  E  P  S  C  S   : S  S  R  F  *  R  H  S  R  C  *  R  F  K  *  Q  G  E  A  K  G  G  E  W  *  R  W  F  C  S  R  K  A  *  S  V  E  C  P  I  S  R   : G  *  D  E  W  Q  S  *  F  G  W  F  S  C  C  I  S  Y  *  A  S  S  S  T  Q  :  G  M  F  *  Y  V  *  R  *  H  N  C  *  *  S  K  L  G  R  Y  Y  A  I  R  V  *  S  A  E  *  Y  A  I  T  S  K  S  *  G  P  R  W  W  K  R  *  W  *  E  S  A  T  E  *  L  L  A  T  F  C  Y  S  W  A  *  K  V  F  *  W  F  T  A  T  G  *  R  S  F  T  Q  K  S  C  Y  *  W  R  E  :  G  I  S  T  S  K  V  P  V  *  A  K  L  *  R  P  T  A  V  S  T  *  K  R  F  R :   R  R  F  I  R  R  S  Y  C  P  T  Q  G  T  F  S  S  H  I  S  R  S  K  S  Q   : G  T  Y  K  L  F  P  *  P  S  S  G  R  F  Y  *  C  N  *  S  R  S  S  S  C  F  T  T  S  N  I  A  M  H  S  T  A  E  Y  F  A  K   : G  G  I  S  E  A  D  Q  V  R  R  A  R  I  C :   Q  P  H  R  L  S  *  S  W  D  Q  *  S  P  A   : D  A  C  Y  F  C  *  R  E  R  T  A  I  N  G  H  S  I  A  T  K  :  H  W  K  S  C  G  R  V  A  E  T  K  D  E  K  C  S   : V  G  K  E  I  E  S  L  I  K  T  R  G  Y  E  G  Y  T  T  W  L  V  K  L  L  P  M  V  V  L  G  H  I  V  K  L  L  G  E  W  V  V  V  F  F  V  Y  H  M  C  E  C  *  V  G  T  Q  I  L  R  C  Y  S  L  S  E  S  *  L  S  I  V  I  Y  Q  L  G  I  V  F  K  L  S  F  N  I  N  *  N  S  R  S  K  K  N  A  A  C  V  N  H  P  C  E  T  Q  N  L  V  P  K  *  T  *  *  *  T  S  *  G  G  V   </second_frame>
            <third_frame>   S  S  I  N  G  E  D  S  I  R  V  A  G  D  D  *  L  Q  R  N  N  Y  N  I  F  R  F  L  I  I  N  G  G  V  V  Q  P  F  H  P  Q  I  Y  L  P  Y  V  L  L  D  F  D  F  P  V  K  V  *  S  D  S  V  L  E  I  H  L  L  H  I  T  S  H  R  N  P  R :   L  L  C  Q  F  W  S  V  L  R  H  Q  L  L  V  V  D  C  I  *  S  S  T  I  L  V  L  H  C  I  S  G  L  Y  S  G  R  I  L  D  Y  L  C  E  Q  S  H  *  I  Y  W  P  A  F  I  C  L  I  F  T  D  I  F  K  F  F  Q  N  R  *  R  *  Y  C  V  *  R  W  S  R  Q  V  I  T  I  K  V  V  G  L  *  N  L  S  I  *  E  I  K  V  D  Q  L  Y  L  V  H  F  R  N  L  F  L  L  K  L  L  V  G  E  V  H  L  M  R  *  L  E  L  *  N  I  S  W  I  T  S  K  M  L  Y  N  W  K  K  P  H  I  L  F  S  K  V  L  D  G  F  Y  I  A  I  *  L  A  M  M  E  Q  L  S  E  K  K  F  P  V  N  A  K  D  Y  T  L  Y  E  E  V  G  D  G  V  S  A  T  V  Y  R  A  L  C  I  P  L  N  E  I  V  A  I  K  V  L  D  L  E  K  C  N  N  D  L  :  D  G  I  R  R  E  V  Q  T  M  I  L  I  D  H  P  N  V  L  R  A  H  C  S  F  T  A  G  H  S  L  W  V  V  M  P  F  M  A  G  G  S  C  L  H  I  M  K  S  S  Y  P  D  G  F  E  E  P  V  I  A  T  L  L  R  E  V  L  K  A  L  V  Y  L  H  Y  H  G  H  I  H  R  D  V  K  :  A  G  N  I  L  I  D  S  N  G  A  I  K  L  A  D  F  G  V  A  A  C  M  F  D  T  G  D  R  Q  R  S  R  N  T  F  V  G  T  P  C  W :   M  A  P  E  V  M  Q  Q  L  H  G  Y  D  F  K :   A  D  I  W  S  F  G  I  T  A  L  E  L  A  H  G  H  A  P  F  S  K  Y  P  P  M  K  :  V  L  L  M  T  L  Q  N  A  P  P  G  L  D  Y  E  R  D  K  R  F  S  K  :  S  F  K  E  M  V  A  A  C  L  V  K  D  P  K  K  R  P  S  S  E  K  L  L  K  H  P  F  F  K  Q  A  R  G  H  D  Y  L  A  R  T  I  L  D  G  L  P  P  L  G  D  R  F  R  M  L  K  :  A  R  E  A  D  Y  L  L  Q  N  Q  A  M  Y  E  D  K  D  H  L  S  Q  :  Q  E  Y  I  R  G  I  S  A  W  N  F  N  L  E  D  L  K  N  Q  A  A  L  :  L  P  D  F  D  D  I  P  D  A  E  D  S  S  N  R  G  K  L  R  E  G  N  G  D  V  G  S  V  V  E  R  H  N  Q  S  S  V  L  S  H  E  :  D  E  M  N  G  N  H  D  L  D  G  S  L  A  A  F  P  I  K  P  L  Q  A  L  K :   G  C  F  D  M  C  E  D  D  I  T  A  S  S  P  S  W  E  D  T  M  Q  S  E  S  N  Q  Q  N  D  M  L  S  L  A  K  V  E  D  Q  D  G  G  K  D  D  G  E  N  L  R  Q  S  S  S  L  P  R  S  V  I  P  G  H  K  K  F  F  S  G  S  L  L  Q  D  N  A  L  S  P  K  K  V  V  T  D  G  E  R :   E  Y  Q  H  P  K  Y  Q  S  E  R  N  Y  S  G  P  L  Q  Y  R  H  K  K  D  L   : G  E  D  S  S  E  G  A  I  V  Q  R  K  G  R  F  Q  V  T  S  A  D  L  S  P  K  :  E  P  T  S  Y  F  L  N  P  V  Q  G  G  S  T  S  A  I  N  L  G  L  A  A  A  S  L  L  P  T  L  Q  C  I  L  Q  Q  N  T  L  Q  R  :  E  E  L  V  K  L  I  K  F  A  E  R  G  S   : V  N  P  T  D  L  A  E  A  G  T  S  D  L  P  Q  :  M  P  A  T  S  V  R  E  R  E  L  Q  S  M  V  I  Q  L  Q  Q  S :   I  G  S  L  V  E  E  L  Q  R  Q  K  M  K  N  V  Q  :  L  E  K  K  L  N  R  *  *  K  L  E  D  M  K  A  T  L  H  G  W  L  S  Y  Y  P  W  L  C  W  G  T  S  L  S  Y  L  A  S  G  W  L  Y  F  L  C  T  I  C  V  N  V  K  *  A  P  K  F  *  D  A  I  H  C  Q  N  L  D  Y  L  L  *  Y  T  N  W  V  L  Y  L  S  C  P  S  I  L  I  E  I  L  G  A  K  K  M  Q  L  V  *  I  T  L  A  K  P  R  T  L  F  R  N  K  P  N  N  K  P  L  K  E  E  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0190P16.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54069" stop="54245"/>
                    <exon start="54943" stop="55197"/>
                    <exon start="55557" stop="55681"/>
                    <exon start="55800" stop="55844"/>
                    <exon start="55928" stop="56009"/>
                    <exon start="56110" stop="56178"/>
                    <exon start="56245" stop="56415"/>
                    <exon start="56520" stop="56585"/>
                    <exon start="57716" stop="57784"/>
                    <exon start="57883" stop="58008"/>
                    <exon start="58210" stop="58283"/>
                    <exon start="59054" stop="59320"/>
                    <exon start="59921" stop="59997"/>
                    <exon start="60358" stop="60434"/>
                    <exon start="61705" stop="61830"/>
                    <exon start="61901" stop="61943"/>
                    <exon start="62067" stop="62113"/>
                    <exon start="62459" stop="62520"/>
                    <exon start="62591" stop="62642"/>
                    <exon start="62830" stop="62853"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2031</number_coding_nucleotides>
                  <number_encoded_amino_acids>677</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LAMMEQLSEKKFPVNAKDYTLYEEVGDGVSATVYRALCIPLNEIVAIKVLDLEKCNNDLDGIRREVQTMILIDHPNVLRAHCSFTAGHSLWVVMPFMAGGSCLHIMKSSYPDGFEEPVIATLLREVLKALVYLHYHGHIHRDVKAGNILIDSNGAIKLADFGVAACMFDTGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKRFSKSFKEMVAACLVKDPKKRPSSEKLLKHPFFKQARGHDYLARTILDGLPPLGDRFRMLKAREADYLLQNQAMYEDKDHLSQQEYIRGISAWNFNLEDLKNQAALLPDFDDIPDAEDSSNRGKLREGNGDVGSVVERHNQSSVLSHEDEMNGNHDLDGSLAAFPIKPLQALKGCFDMCEDDITASSPSWEDTMQSESNQQNDMLSLAKVEDQDGGKDDGENLRQSSSLPRSVIPGHKKFFSGSLLQDNALSPKKVVTDGEREYQHPKYQSERNYSGPLQYRHKKDLGEDSSEGAIVQRKGRFQVTSADLSPKEPTSYFLNPVQGGSTSAINLGLAAASLLPTLQCILQQNTLQREELVKLIKFAERGSVNPTDLAEAGTSDLPQMPATSVRERELQSMVIQLQQSIGSLVEELQRQKMKNVQLEKKLNR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0190P16.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53714" stop="53908"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AVSLNILASVHLSYFHGHFQVFSEPLTVILCLKVVKASHYDQGCWVIKLVNLRDKSRPIISSAF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
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          </exon_coordinates>
        </AGS_line>
        <SCR_line>
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          <exon-intron don_prob="0.988" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.925" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.931" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.898" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.456" acc_prob="0.844" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.611" acc_prob="0.798" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.886" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.377" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.956" e_score="1.000"/>
          <exon-only e_score="0.959"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
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          </intron>
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          <intron i_serial="3" don_prob="0.925" acc_prob="0.996">
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          </intron>
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          </intron>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCTTCAATAAACGGCGAAGATTCGATCAGAGTAGCCGGGGACGACTAACTGCAACGTAACAACTATAATATCTTCCGATTCCTAATCATCAATGGCGGAGTAGTCCAACCGTTTCATCCCCAAATTTATCTTCCATACGTGTTGTTGGATTTCGATTTTCCGGTCAAGGTCTAGTCAGATTCAGTCCTCGAAATTCATCTTTTGCATATCACCTCCCATCGGAACCCTAG : ATTGCTTTGTCAGTTCTGGAGTGTACTCAGGCATCAGCTTCTAGTGGTAGATTGCATCTAGTCTTCGACTATTTTGGTACTCCACTGCATTTCGGGATTGTACTCAGGTCGAATATTAGATTATCTCTGTGAGCAGTCTCACTGAATATATTGGCCAGCGTTCATCTGTCTTATTTTCACGGACATTTTCAAGTTTTTTCAGAACCGTTGACGGTAATATTGTGTTTGAAGGTGGTCAAGGCAAGTCATTACGATCAAGGTTGTTGGGTTATAAAACTTGTCAATCTGAGAGATAAAAGTCGACCAATTATATCTAGTGCATTTTAGGAATTTATTCCTGTTGAAGTTATTGGTAGGGGAAGTTCATCTCATGAGGTAGCTGGAGCTATAAAATATCTCGTGGATCACAAGCAAAATGTTATATAATTGGAAGAAGCCTCACATTCTTTTCTCTAAAGTGCTTGATGGTTTTTATATTGCAATATAACTAGCAATGATGGAACAGCTATCGGAGAAAAAGTTCCCTGTCAACGCAAAAGATTATACACTATATGAGGAAGTTGGAGATGGTGTCAGTGCAACTGTGTATCGGGCTCTGTGCATTCCTCTTAATGAAATTGTTGCAATCAAGGTTCTAGATTTGGAGAAGTGCAACAATGATCTG : GATGGAATCCGGAGAGAGGTGCAGACCATGATCTTGATTGATCATCCAAATGTATTGCGTGCACACTGCTCATTCACTGCAGGTCACAGCCTTTGGGTTGTCATGCCATTCATGGCTGGAGGATCTTGCCTTCATATCATGAAATCTTCTTATCCTGATGGTTTTGAAGAGCCTGTAATTGCTACATTATTGCGCGAGGTCCTCAAAGCCCTTGTATATCTTCATTACCATGGACACATCCATAGAGATGTAAAG : GCTGGGAACATTTTGATTGATTCAAATGGTGCTATTAAATTGGCAGATTTTGGAGTTGCTGCTTGCATGTTTGATACTGGTGATAGGCAGCGTTCAAGAAATACTTTTGTTGGAACTCCGTGCTG : GATGGCTCCCGAAGTGATGCAGCAACTACATGGATATGATTTTAA : AGCAGATATATGGTCATTTGGAATAACAGCCCTTGAACTTGCTCATGGTCATGCACCATTCTCCAAGTACCCACCCATGAAG : GTTCTGCTGATGACCCTACAGAATGCACCTCCAGGCCTGGACTATGAACGGGACAAGAGATTCTCTAAG : TCTTTTAAAGAAATGGTTGCTGCTTGCTTAGTAAAAGATCCAAAGAAGCGTCCGTCTTCTGAGAAGCTTTTGAAGCACCCTTTCTTTAAACAAGCACGAGGACATGATTATTTGGCACGTACAATCCTTGATGGCCTTCCACCTCTAGGTGATCGTTTTAGGATGCTTAAG : GCTAGAGAAGCAGATTATCTTTTACAGAACCAGGCAATGTATGAGGACAAGGACCATTTATCACAG : CAAGAGTATATTCGTGGTATCAGTGCTTGGAATTTCAATCTGGAGGATCTGAAGAACCAAGCTGCTCTT : CTTCCAGATTTTGACGACATTCCAGATGCTGAAGATTCAAGTAACAGGGGGAAGCTAAGGGAGGGGAATGGTGACGTTGGTTCTGTAGTAGAAAGGCATAATCAGTCGAGTGTCCTATCTCACGAG : GATGAGATGAATGGCAATCATGATTTGGATGGTTCTCTTGCTGCATTTCCTATTAAGCCTCTTCAAGCACTCAA : GGGATGTTTTGATATGTGTGAAGATGACATAACTGCTAGTAGTCCAAGTTGGGAAGATACTATGCAATCAGAGTCTAATCAGCAGAATGATATGCTATCACTAGCAAAAGTTGAGGACCAAGATGGTGGAAAAGATGATGGTGAGAATCTGCGACAGAGTAGCTCCTTGCCACGTTCTGTTATTCCTGGGCATAAAAAGTTTTTTAGTGGTTCACTGCTACAGGATAACGCTCTTTCACCCAAAAAAGTTGTTACTGATGGAGAGAG : GGAATATCAACATCCAAAGTACCAGTCTGAGCGAAACTATAGCGGCCCACTGCAGTATCGACATAAAAAAGATTTAG : GAGAAGATTCATCAGAAGGAGCTATTGTCCAACGCAAGGGACGTTTTCAAGTCACATCAGCAGATCTAAGTCCCAAG : GAACCTACAAGCTATTTCCTTAACCCAGTTCAGGGAGGTTCTACTAGTGCAATTAATCTAGGTCTAGCAGCTGCTTCACTACTTCCAACATTGCAATGCATTCTACAGCAGAATACTTTGCAAAGG : GAGGAATTAGTGAAGCTGATCAAGTTCGCAGAGCGAGGATCTG : TCAACCCCACAGACTTAGCTGAAGCTGGGACCAGTGATCTCCCGCAG : GGATTAGAAGGTAGAACTTTTTTAGTAAAGGAAGGGGTTGGAGTTGGGGTGATGTGCCCTATCCCATGCTCAGTGTGTACAAGAAATGCATGGTGTATCTCTGAATTATGGCACGCTCCTGCATCCTCCTAACATCAGCACTTCCACTCTGCAGATGCCTGCTACTTCTGTTAGAGAGAGAGAACTGCAATCAATGGTCATTCAATTGCAACAAAG : CATTGGAAGTCTTGTGGAAGAGTTGCAGAGACAAAAGATGAAAAATGTTCAG : TTGGAAAAGAAATTGAATCGCTGATAAAAACTAGAGGATATGAAGGCTACACTACATGGTTGGTTAAGTTACTACCCATGGTTGTGCTGGGGCACATCGTTAAGTTACTTGGCGAGTGGGTGGTTGTATTTTTTGTGTACCATATGTGTGAATGTTAAGTAGGCACCCAAATTTTGAGATGCTATTCATTGTCAGAATCTTGATTATCTATTGTAATATACCAATTGGGTATTGTATTTAAGTTGTCCTTCAATATTAATTGAAATTCTAGGAGCAAAAAAAATGCAGCTTGTGTAAATCACCCTTGCGAAACCCAGAACCTTGTTCCGAAATAAACCTAATAATAAACCTCTTAAGGAGGAGTTTG</gDNA_template>
            <first_frame> S  L  Q  *  T  A  K  I  R  S  E  *  P  G  T  T  N  C  N  V  T  T  I  I  S  S  D  S  *  S  S  M  A  E  *  S  N  R  F  I  P  K  F  I  F  H  T  C  C  W  I  S  I  F  R  S  R  S  S  Q  I  Q  S  S  K  F  I  F  C  I  S  P  P  I  G  T  L   : D  C  F  V  S  S  G  V  Y  S  G  I  S  F  *  W  *  I  A  S  S  L  R  L  F  W  Y  S  T  A  F  R  D  C  T  Q  V  E  Y  *  I  I  S  V  S  S  L  T  E  Y  I  G  Q  R  S  S  V  L  F  S  R  T  F  S  S  F  F  R  T  V  D  G  N  I  V  F  E  G  G  Q  G  K  S  L  R  S  R  L  L  G  Y  K  T  C  Q  S  E  R  *  K  S  T  N  Y  I  *  C  I  L  G  I  Y  S  C  *  S  Y  W  *  G  K  F  I  S  *  G  S  W  S  Y  K  I  S  R  G  S  Q  A  K  C  Y  I  I  G  R  S  L  T  F  F  S  L  K  C  L  M  V  F  I  L  Q  Y  N  *  Q  *  W  N  S  Y  R  R  K  S  S  L  S  T  Q  K  I  I  H  Y  M  R  K  L  E  M  V  S  V  Q  L  C  I  G  L  C  A  F  L  L  M  K  L  L  Q  S  R  F  *  I  W  R  S  A  T  M  I  W :   M  E  S  G  E  R  C  R  P  *  S  *  L  I  I  Q  M  Y  C  V  H  T  A  H  S  L  Q  V  T  A  F  G  L  S  C  H  S  W  L  E  D  L  A  F  I  S  *  N  L  L  I  L  M  V  L  K  S  L  *  L  L  H  Y  C  A  R  S  S  K  P  L  Y  I  F  I  T  M  D  T  S  I  E  M  *  R :   L  G  T  F  *  L  I  Q  M  V  L  L  N  W  Q  I  L  E  L  L  L  A  C  L  I  L  V  I  G  S  V  Q  E  I  L  L  L  E  L  R  A   : G  W  L  P  K  *  C  S  N  Y  M  D  M  I  L   : K  Q  I  Y  G  H  L  E  *  Q  P  L  N  L  L  M  V  M  H  H  S  P  S  T  H  P  *  R :   F  C  *  *  P  Y  R  M  H  L  Q  A  W  T  M  N  G  T  R  D  S  L  S :   L  L  K  K  W  L  L  L  A  *  *  K  I  Q  R  S  V  R  L  L  R  S  F  *  S  T  L  S  L  N  K  H  E  D  M  I  I  W  H  V  Q  S  L  M  A  F  H  L  *  V  I  V  L  G  C  L  R :   L  E  K  Q  I  I  F  Y  R  T  R  Q  C  M  R  T  R  T  I  Y  H  S :   K  S  I  F  V  V  S  V  L  G  I  S  I  W  R  I  *  R  T  K  L  L  F :   F  Q  I  L  T  T  F  Q  M  L  K  I  Q  V  T  G  G  S  *  G  R  G  M  V  T  L  V  L  *  *  K  G  I  I  S  R  V  S  Y  L  T  R :   M  R  *  M  A  I  M  I  W  M  V  L  L  L  H  F  L  L  S  L  F  K  H  S   : R  D  V  L  I  C  V  K  M  T  *  L  L  V  V  Q  V  G  K  I  L  C  N  Q  S  L  I  S  R  M  I  C  Y  H  *  Q  K  L  R  T  K  M  V  E  K  M  M  V  R  I  C  D  R  V  A  P  C  H  V  L  L  F  L  G  I  K  S  F  L  V  V  H  C  Y  R  I  T  L  F  H  P  K  K  L  L  L  M  E  R   : G  N  I  N  I  Q  S  T  S  L  S  E  T  I  A  A  H  C  S  I  D  I  K  K  I  *  :  E  K  I  H  Q  K  E  L  L  S  N  A  R  D  V  F  K  S  H  Q  Q  I  *  V  P  R :   N  L  Q  A  I  S  L  T  Q  F  R  E  V  L  L  V  Q  L  I  *  V  *  Q  L  L  H  Y  F  Q  H  C  N  A  F  Y  S  R  I  L  C  K  G :   R  N  *  *  S  *  S  S  S  Q  S  E  D  L  :  S  T  P  Q  T  *  L  K  L  G  P  V  I  S  R  R :   D  *  K  V  E  L  F  *  *  R  K  G  L  E  L  G  *  C  A  L  S  H  A  Q  C  V  Q  E  M  H  G  V  S  L  N  Y  G  T  L  L  H  P  P  N  I  S  T  S  T  L  Q  M  P  A  T  S  V  R  E  R  E  L  Q  S  M  V  I  Q  L  Q  Q  S :   I  G  S  L  V  E  E  L  Q  R  Q  K  M  K  N  V  Q  :  L  E  K  K  L  N  R  *  *  K  L  E  D  M  K  A  T  L  H  G  W  L  S  Y  Y  P  W  L  C  W  G  T  S  L  S  Y  L  A  S  G  W  L  Y  F  L  C  T  I  C  V  N  V  K  *  A  P  K  F  *  D  A  I  H  C  Q  N  L  D  Y  L  L  *  Y  T  N  W  V  L  Y  L  S  C  P  S  I  L  I  E  I  L  G  A  K  K  M  Q  L  V  *  I  T  L  A  K  P  R  T  L  F  R  N  K  P  N  N  K  P  L  K  E  E  F  </first_frame>
            <second_frame>  L  F  N  K  R  R  R  F  D  Q  S  S  R  G  R  L  T  A  T  *  Q  L  *  Y  L  P  I  P  N  H  Q  W  R  S  S  P  T  V  S  S  P  N  L  S  S  I  R  V  V  G  F  R  F  S  G  Q  G  L  V  R  F  S  P  R  N  S  S  F  A  Y  H  L  P  S  E  P  *  :  I  A  L  S  V  L  E  C  T  Q  A  S  A  S  S  G  R  L  H  L  V  F  D  Y  F  G  T  P  L  H  F  G  I  V  L  R  S  N  I  R  L  S  L  *  A  V  S  L  N  I  L  A  S  V  H  L  S  Y  F  H  G  H  F  Q  V  F  S  E  P  L  T  V  I  L  C  L  K  V  V  K  A  S  H  Y  D  Q  G  C  W  V  I  K  L  V  N  L  R  D  K  S  R  P  I  I  S  S  A  F  *  E  F  I  P  V  E  V  I  G  R  G  S  S  S  H  E  V  A  G  A  I  K  Y  L  V  D  H  K  Q  N  V  I  *  L  E  E  A  S  H  S  F  L  *  S  A  *  W  F  L  Y  C  N  I  T  S  N  D  G  T  A  I  G  E  K  V  P  C  Q  R  K  R  L  Y  T  I  *  G  S  W  R  W  C  Q  C  N  C  V  S  G  S  V  H  S  S  *  *  N  C  C  N  Q  G  S  R  F  G  E  V  Q  Q  *  S   : G  W  N  P  E  R  G  A  D  H  D  L  D  *  S  S  K  C  I  A  C  T  L  L  I  H  C  R  S  Q  P  L  G  C  H  A  I  H  G  W  R  I  L  P  S  Y  H  E  I  F  L  S  *  W  F  *  R  A  C  N  C  Y  I  I  A  R  G  P  Q  S  P  C  I  S  S  L  P  W  T  H  P  *  R  C  K   : G  W  E  H  F  D  *  F  K  W  C  Y  *  I  G  R  F  W  S  C  C  L  H  V  *  Y  W  *  *  A  A  F  K  K  Y  F  C  W  N  S  V  L  :  D  G  S  R  S  D  A  A  T  T  W  I  *  F  *  :  S  R  Y  M  V  I  W  N  N  S  P  *  T  C  S  W  S  C  T  I  L  Q  V  P  T  H  E   : G  S  A  D  D  P  T  E  C  T  S  R  P  G  L  *  T  G  Q  E  I  L  *   : V  F  *  R  N  G  C  C  L  L  S  K  R  S  K  E  A  S  V  F  *  E  A  F  E  A  P  F  L  *  T  S  T  R  T  *  L  F  G  T  Y  N  P  *  W  P  S  T  S  R  *  S  F  *  D  A  *   : G  *  R  S  R  L  S  F  T  E  P  G  N  V  *  G  Q  G  P  F  I  T   : A  R  V  Y  S  W  Y  Q  C  L  E  F  Q  S  G  G  S  E  E  P  S  C  S   : S  S  R  F  *  R  H  S  R  C  *  R  F  K  *  Q  G  E  A  K  G  G  E  W  *  R  W  F  C  S  R  K  A  *  S  V  E  C  P  I  S  R   : G  *  D  E  W  Q  S  *  F  G  W  F  S  C  C  I  S  Y  *  A  S  S  S  T  Q  :  G  M  F  *  Y  V  *  R  *  H  N  C  *  *  S  K  L  G  R  Y  Y  A  I  R  V  *  S  A  E  *  Y  A  I  T  S  K  S  *  G  P  R  W  W  K  R  *  W  *  E  S  A  T  E  *  L  L  A  T  F  C  Y  S  W  A  *  K  V  F  *  W  F  T  A  T  G  *  R  S  F  T  Q  K  S  C  Y  *  W  R  E  :  G  I  S  T  S  K  V  P  V  *  A  K  L  *  R  P  T  A  V  S  T  *  K  R  F  R :   R  R  F  I  R  R  S  Y  C  P  T  Q  G  T  F  S  S  H  I  S  R  S  K  S  Q   : G  T  Y  K  L  F  P  *  P  S  S  G  R  F  Y  *  C  N  *  S  R  S  S  S  C  F  T  T  S  N  I  A  M  H  S  T  A  E  Y  F  A  K   : G  G  I  S  E  A  D  Q  V  R  R  A  R  I  C :   Q  P  H  R  L  S  *  S  W  D  Q  *  S  P  A   : G  I  R  R  *  N  F  F  S  K  G  R  G  W  S  W  G  D  V  P  Y  P  M  L  S  V  Y  K  K  C  M  V  Y  L  *  I  M  A  R  S  C  I  L  L  T  S  A  L  P  L  C  R  C  L  L  L  L  L  E  R  E  N  C  N  Q  W  S  F  N  C  N  K   : A  L  E  V  L  W  K  S  C  R  D  K  R  *  K  M  F  S :   W  K  R  N  *  I  A  D  K  N  *  R  I  *  R  L  H  Y  M  V  G  *  V  T  T  H  G  C  A  G  A  H  R  *  V  T  W  R  V  G  G  C  I  F  C  V  P  Y  V  *  M  L  S  R  H  P  N  F  E  M  L  F  I  V  R  I  L  I  I  Y  C  N  I  P  I  G  Y  C  I  *  V  V  L  Q  Y  *  L  K  F  *  E  Q  K  K  C  S  L  C  K  S  P  L  R  N  P  E  P  C  S  E  I  N  L  I  I  N  L  L  R  R  S  L </second_frame>
            <third_frame>   S  S  I  N  G  E  D  S  I  R  V  A  G  D  D  *  L  Q  R  N  N  Y  N  I  F  R  F  L  I  I  N  G  G  V  V  Q  P  F  H  P  Q  I  Y  L  P  Y  V  L  L  D  F  D  F  P  V  K  V  *  S  D  S  V  L  E  I  H  L  L  H  I  T  S  H  R  N  P  R :   L  L  C  Q  F  W  S  V  L  R  H  Q  L  L  V  V  D  C  I  *  S  S  T  I  L  V  L  H  C  I  S  G  L  Y  S  G  R  I  L  D  Y  L  C  E  Q  S  H  *  I  Y  W  P  A  F  I  C  L  I  F  T  D  I  F  K  F  F  Q  N  R  *  R  *  Y  C  V  *  R  W  S  R  Q  V  I  T  I  K  V  V  G  L  *  N  L  S  I  *  E  I  K  V  D  Q  L  Y  L  V  H  F  R  N  L  F  L  L  K  L  L  V  G  E  V  H  L  M  R  *  L  E  L  *  N  I  S  W  I  T  S  K  M  L  Y  N  W  K  K  P  H  I  L  F  S  K  V  L  D  G  F  Y  I  A  I  *  L  A  M  M  E  Q  L  S  E  K  K  F  P  V  N  A  K  D  Y  T  L  Y  E  E  V  G  D  G  V  S  A  T  V  Y  R  A  L  C  I  P  L  N  E  I  V  A  I  K  V  L  D  L  E  K  C  N  N  D  L  :  D  G  I  R  R  E  V  Q  T  M  I  L  I  D  H  P  N  V  L  R  A  H  C  S  F  T  A  G  H  S  L  W  V  V  M  P  F  M  A  G  G  S  C  L  H  I  M  K  S  S  Y  P  D  G  F  E  E  P  V  I  A  T  L  L  R  E  V  L  K  A  L  V  Y  L  H  Y  H  G  H  I  H  R  D  V  K  :  A  G  N  I  L  I  D  S  N  G  A  I  K  L  A  D  F  G  V  A  A  C  M  F  D  T  G  D  R  Q  R  S  R  N  T  F  V  G  T  P  C  W :   M  A  P  E  V  M  Q  Q  L  H  G  Y  D  F  K :   A  D  I  W  S  F  G  I  T  A  L  E  L  A  H  G  H  A  P  F  S  K  Y  P  P  M  K  :  V  L  L  M  T  L  Q  N  A  P  P  G  L  D  Y  E  R  D  K  R  F  S  K  :  S  F  K  E  M  V  A  A  C  L  V  K  D  P  K  K  R  P  S  S  E  K  L  L  K  H  P  F  F  K  Q  A  R  G  H  D  Y  L  A  R  T  I  L  D  G  L  P  P  L  G  D  R  F  R  M  L  K  :  A  R  E  A  D  Y  L  L  Q  N  Q  A  M  Y  E  D  K  D  H  L  S  Q  :  Q  E  Y  I  R  G  I  S  A  W  N  F  N  L  E  D  L  K  N  Q  A  A  L  :  L  P  D  F  D  D  I  P  D  A  E  D  S  S  N  R  G  K  L  R  E  G  N  G  D  V  G  S  V  V  E  R  H  N  Q  S  S  V  L  S  H  E  :  D  E  M  N  G  N  H  D  L  D  G  S  L  A  A  F  P  I  K  P  L  Q  A  L  K :   G  C  F  D  M  C  E  D  D  I  T  A  S  S  P  S  W  E  D  T  M  Q  S  E  S  N  Q  Q  N  D  M  L  S  L  A  K  V  E  D  Q  D  G  G  K  D  D  G  E  N  L  R  Q  S  S  S  L  P  R  S  V  I  P  G  H  K  K  F  F  S  G  S  L  L  Q  D  N  A  L  S  P  K  K  V  V  T  D  G  E  R :   E  Y  Q  H  P  K  Y  Q  S  E  R  N  Y  S  G  P  L  Q  Y  R  H  K  K  D  L   : G  E  D  S  S  E  G  A  I  V  Q  R  K  G  R  F  Q  V  T  S  A  D  L  S  P  K  :  E  P  T  S  Y  F  L  N  P  V  Q  G  G  S  T  S  A  I  N  L  G  L  A  A  A  S  L  L  P  T  L  Q  C  I  L  Q  Q  N  T  L  Q  R  :  E  E  L  V  K  L  I  K  F  A  E  R  G  S   : V  N  P  T  D  L  A  E  A  G  T  S  D  L  P  Q  :  G  L  E  G  R  T  F  L  V  K  E  G  V  G  V  G  V  M  C  P  I  P  C  S  V  C  T  R  N  A  W  C  I  S  E  L  W  H  A  P  A  S  S  *  H  Q  H  F  H  S  A  D  A  C  Y  F  C  *  R  E  R  T  A  I  N  G  H  S  I  A  T  K  :  H  W  K  S  C  G  R  V  A  E  T  K  D  E  K  C  S   : V  G  K  E  I  E  S  L  I  K  T  R  G  Y  E  G  Y  T  T  W  L  V  K  L  L  P  M  V  V  L  G  H  I  V  K  L  L  G  E  W  V  V  V  F  F  V  Y  H  M  C  E  C  *  V  G  T  Q  I  L  R  C  Y  S  L  S  E  S  *  L  S  I  V  I  Y  Q  L  G  I  V  F  K  L  S  F  N  I  N  *  N  S  R  S  K  K  N  A  A  C  V  N  H  P  C  E  T  Q  N  L  V  P  K  *  T  *  *  *  T  S  *  G  G  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0190P16.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54069" stop="54245"/>
                    <exon start="54943" stop="55197"/>
                    <exon start="55557" stop="55681"/>
                    <exon start="55800" stop="55844"/>
                    <exon start="55928" stop="56009"/>
                    <exon start="56110" stop="56178"/>
                    <exon start="56245" stop="56415"/>
                    <exon start="56520" stop="56585"/>
                    <exon start="57716" stop="57784"/>
                    <exon start="57883" stop="58008"/>
                    <exon start="58210" stop="58283"/>
                    <exon start="59054" stop="59320"/>
                    <exon start="59921" stop="59997"/>
                    <exon start="60358" stop="60434"/>
                    <exon start="61705" stop="61830"/>
                    <exon start="61901" stop="61943"/>
                    <exon start="62067" stop="62113"/>
                    <exon start="62305" stop="62436"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2025</number_coding_nucleotides>
                  <number_encoded_amino_acids>675</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LAMMEQLSEKKFPVNAKDYTLYEEVGDGVSATVYRALCIPLNEIVAIKVLDLEKCNNDLDGIRREVQTMILIDHPNVLRAHCSFTAGHSLWVVMPFMAGGSCLHIMKSSYPDGFEEPVIATLLREVLKALVYLHYHGHIHRDVKAGNILIDSNGAIKLADFGVAACMFDTGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKRFSKSFKEMVAACLVKDPKKRPSSEKLLKHPFFKQARGHDYLARTILDGLPPLGDRFRMLKAREADYLLQNQAMYEDKDHLSQQEYIRGISAWNFNLEDLKNQAALLPDFDDIPDAEDSSNRGKLREGNGDVGSVVERHNQSSVLSHEDEMNGNHDLDGSLAAFPIKPLQALKGCFDMCEDDITASSPSWEDTMQSESNQQNDMLSLAKVEDQDGGKDDGENLRQSSSLPRSVIPGHKKFFSGSLLQDNALSPKKVVTDGEREYQHPKYQSERNYSGPLQYRHKKDLGEDSSEGAIVQRKGRFQVTSADLSPKEPTSYFLNPVQGGSTSAINLGLAAASLLPTLQCILQQNTLQREELVKLIKFAERGSVNPTDLAEAGTSDLPQGLEGRTFLVKEGVGVGVMCPIPCSVCTRNAWCISELWHAPASS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0190P16.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62479" stop="62520"/>
                    <exon start="62591" stop="62642"/>
                    <exon start="62830" stop="62987"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RERTAINGHSIATKHWKSCGRVAETKDEKCSVGKEIESLIKTRGYEGYTTWLVKLLPMVVLGHIVKLLGEWVVVFFVYHMCEC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0190P16.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53714" stop="53908"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AVSLNILASVHLSYFHGHFQVFSEPLTVILCLKVVKASHYDQGCWVIKLVNLRDKSRPIISSAF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="52875" e_stop="53106"/>
            <exon e_start="53582" e_stop="54245"/>
            <exon e_start="54943" e_stop="55197"/>
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            <exon e_start="55800" e_stop="55844"/>
            <exon e_start="55928" e_stop="56009"/>
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            <exon e_start="56245" e_stop="56415"/>
            <exon e_start="56520" e_stop="56585"/>
            <exon e_start="57716" e_stop="57784"/>
            <exon e_start="57883" e_stop="58008"/>
            <exon e_start="58210" e_stop="58283"/>
            <exon e_start="59054" e_stop="59193"/>
            <exon e_start="59261" e_stop="59320"/>
            <exon e_start="59921" e_stop="59997"/>
            <exon e_start="60358" e_stop="60434"/>
            <exon e_start="61705" e_stop="61830"/>
            <exon e_start="61901" e_stop="61943"/>
            <exon e_start="62067" e_stop="62113"/>
            <exon e_start="62459" e_stop="62520"/>
            <exon e_start="62591" e_stop="62642"/>
            <exon e_start="62830" e_stop="63196"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.891" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.925" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.931" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.898" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.456" acc_prob="0.844" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.611" acc_prob="0.798" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.886" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.956" e_score="1.000"/>
          <exon-only e_score="0.959"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52875" e_stop="53106" e_length="232"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.891">
            <gDNA_intron_boundary i_start="53107" i_stop="53581" i_length="475"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="53582" e_stop="54245" e_length="664"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.996">
            <gDNA_intron_boundary i_start="54246" i_stop="54942" i_length="697"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="54943" e_stop="55197" e_length="255"/>
          </exon>
          <intron i_serial="3" don_prob="0.925" acc_prob="0.996">
            <gDNA_intron_boundary i_start="55198" i_stop="55556" i_length="359"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="55557" e_stop="55681" e_length="125"/>
          </exon>
          <intron i_serial="4" don_prob="0.931" acc_prob="0.997">
            <gDNA_intron_boundary i_start="55682" i_stop="55799" i_length="118"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="55800" e_stop="55844" e_length="45"/>
          </exon>
          <intron i_serial="5" don_prob="0.988" acc_prob="0.898">
            <gDNA_intron_boundary i_start="55845" i_stop="55927" i_length="83"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="55928" e_stop="56009" e_length="82"/>
          </exon>
          <intron i_serial="6" don_prob="0.985" acc_prob="0.999">
            <gDNA_intron_boundary i_start="56010" i_stop="56109" i_length="100"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="56110" e_stop="56178" e_length="69"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.985">
            <gDNA_intron_boundary i_start="56179" i_stop="56244" i_length="66"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="56245" e_stop="56415" e_length="171"/>
          </exon>
          <intron i_serial="8" don_prob="0.949" acc_prob="0.997">
            <gDNA_intron_boundary i_start="56416" i_stop="56519" i_length="104"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="56520" e_stop="56585" e_length="66"/>
          </exon>
          <intron i_serial="9" don_prob="0.456" acc_prob="0.844">
            <gDNA_intron_boundary i_start="56586" i_stop="57715" i_length="1130"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="57716" e_stop="57784" e_length="69"/>
          </exon>
          <intron i_serial="10" don_prob="0.999" acc_prob="0.999">
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          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="57883" e_stop="58008" e_length="126"/>
          </exon>
          <intron i_serial="11" don_prob="0.997" acc_prob="0.987">
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          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="58210" e_stop="58283" e_length="74"/>
          </exon>
          <intron i_serial="12" don_prob="0.998" acc_prob="0.998">
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          <exon e_serial="13" e_score="1.000">
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          <intron i_serial="13" don_prob="0.000" acc_prob="0.000">
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          <exon e_serial="14" e_score="1.000">
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          </exon>
          <intron i_serial="14" don_prob="0.995" acc_prob="0.961">
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          <exon e_serial="15" e_score="1.000">
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          </exon>
          <intron i_serial="15" don_prob="0.611" acc_prob="0.798">
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          <exon e_serial="16" e_score="1.000">
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          <intron i_serial="16" don_prob="0.994" acc_prob="0.984">
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          </exon>
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          </exon>
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          </intron>
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          </exon>
          <intron i_serial="21" don_prob="0.972" acc_prob="0.956">
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          <exon e_serial="22" e_score="0.959">
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          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52875" stop="53106"/>
              <exon start="53582" stop="53878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52881" stop="53106"/>
              <exon start="53582" stop="53967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52883" stop="53106"/>
              <exon start="53582" stop="53767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52896" stop="53106"/>
              <exon start="53582" stop="54079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52898" stop="53106"/>
              <exon start="53582" stop="54079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52920" stop="53106"/>
              <exon start="53582" stop="54002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52995" stop="53106"/>
              <exon start="53582" stop="54245"/>
              <exon start="54943" stop="54999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53041" stop="53106"/>
              <exon start="53582" stop="54083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54116" stop="54245"/>
              <exon start="54943" stop="55197"/>
              <exon start="55557" stop="55681"/>
              <exon start="55800" stop="55844"/>
              <exon start="55928" stop="56009"/>
              <exon start="56110" stop="56138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574304" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54154" stop="54245"/>
              <exon start="54943" stop="55197"/>
              <exon start="55557" stop="55681"/>
              <exon start="55800" stop="55844"/>
              <exon start="55928" stop="56009"/>
              <exon start="56110" stop="56139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54955" stop="55197"/>
              <exon start="55557" stop="55681"/>
              <exon start="55800" stop="55844"/>
              <exon start="55928" stop="56009"/>
              <exon start="56110" stop="56178"/>
              <exon start="56245" stop="56259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55143" stop="55197"/>
              <exon start="55557" stop="55681"/>
              <exon start="55800" stop="55844"/>
              <exon start="55928" stop="56009"/>
              <exon start="56110" stop="56178"/>
              <exon start="56245" stop="56415"/>
              <exon start="56520" stop="56544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55948" stop="56009"/>
              <exon start="56110" stop="56178"/>
              <exon start="56245" stop="56415"/>
              <exon start="56520" stop="56585"/>
              <exon start="57716" stop="57784"/>
              <exon start="57883" stop="58008"/>
              <exon start="58210" stop="58253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56117" stop="56178"/>
              <exon start="56245" stop="56415"/>
              <exon start="56520" stop="56585"/>
              <exon start="57716" stop="57784"/>
              <exon start="57883" stop="58008"/>
              <exon start="58210" stop="58283"/>
              <exon start="59054" stop="59164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56169" stop="56178"/>
              <exon start="56245" stop="56415"/>
              <exon start="56520" stop="56585"/>
              <exon start="57716" stop="57784"/>
              <exon start="57883" stop="58008"/>
              <exon start="58210" stop="58283"/>
              <exon start="59054" stop="59166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56533" stop="56585"/>
              <exon start="57716" stop="57784"/>
              <exon start="57883" stop="58008"/>
              <exon start="58210" stop="58283"/>
              <exon start="59054" stop="59155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59082" stop="59193"/>
              <exon start="59261" stop="59320"/>
              <exon start="59921" stop="59997"/>
              <exon start="60358" stop="60434"/>
              <exon start="61705" stop="61830"/>
              <exon start="61901" stop="61943"/>
              <exon start="62067" stop="62113"/>
              <exon start="62459" stop="62520"/>
              <exon start="62591" stop="62642"/>
              <exon start="62830" stop="62853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59921" stop="59997"/>
              <exon start="60358" stop="60434"/>
              <exon start="61705" stop="61830"/>
              <exon start="61901" stop="61943"/>
              <exon start="62067" stop="62113"/>
              <exon start="62459" stop="62489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61794" stop="61830"/>
              <exon start="61901" stop="61943"/>
              <exon start="62067" stop="62113"/>
              <exon start="62459" stop="62520"/>
              <exon start="62591" stop="62642"/>
              <exon start="62830" stop="63067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411432" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62497" stop="62520"/>
              <exon start="62591" stop="62642"/>
              <exon start="62830" stop="63114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62616" stop="62642"/>
              <exon start="62830" stop="63196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406633" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCTTCAATAAACGGCGAAGATTCGATCAGAGTAGCCGGGGACGACTAACTGCAACGTAACAACTATAATATCTTCCGATTCCTAATCATCAATGGCGGAGTAGTCCAACCGTTTCATCCCCAAATTTATCTTCCATACGTGTTGTTGGATTTCGATTTTCCGGTCAAGGTCTAGTCAGATTCAGTCCTCGAAATTCATCTTTTGCATATCACCTCCCATCGGAACCCTAG : ATTGCTTTGTCAGTTCTGGAGTGTACTCAGGCATCAGCTTCTAGTGGTAGATTGCATCTAGTCTTCGACTATTTTGGTACTCCACTGCATTTCGGGATTGTACTCAGGTCGAATATTAGATTATCTCTGTGAGCAGTCTCACTGAATATATTGGCCAGCGTTCATCTGTCTTATTTTCACGGACATTTTCAAGTTTTTTCAGAACCGTTGACGGTAATATTGTGTTTGAAGGTGGTCAAGGCAAGTCATTACGATCAAGGTTGTTGGGTTATAAAACTTGTCAATCTGAGAGATAAAAGTCGACCAATTATATCTAGTGCATTTTAGGAATTTATTCCTGTTGAAGTTATTGGTAGGGGAAGTTCATCTCATGAGGTAGCTGGAGCTATAAAATATCTCGTGGATCACAAGCAAAATGTTATATAATTGGAAGAAGCCTCACATTCTTTTCTCTAAAGTGCTTGATGGTTTTTATATTGCAATATAACTAGCAATGATGGAACAGCTATCGGAGAAAAAGTTCCCTGTCAACGCAAAAGATTATACACTATATGAGGAAGTTGGAGATGGTGTCAGTGCAACTGTGTATCGGGCTCTGTGCATTCCTCTTAATGAAATTGTTGCAATCAAGGTTCTAGATTTGGAGAAGTGCAACAATGATCTG : GATGGAATCCGGAGAGAGGTGCAGACCATGATCTTGATTGATCATCCAAATGTATTGCGTGCACACTGCTCATTCACTGCAGGTCACAGCCTTTGGGTTGTCATGCCATTCATGGCTGGAGGATCTTGCCTTCATATCATGAAATCTTCTTATCCTGATGGTTTTGAAGAGCCTGTAATTGCTACATTATTGCGCGAGGTCCTCAAAGCCCTTGTATATCTTCATTACCATGGACACATCCATAGAGATGTAAAG : GCTGGGAACATTTTGATTGATTCAAATGGTGCTATTAAATTGGCAGATTTTGGAGTTGCTGCTTGCATGTTTGATACTGGTGATAGGCAGCGTTCAAGAAATACTTTTGTTGGAACTCCGTGCTG : GATGGCTCCCGAAGTGATGCAGCAACTACATGGATATGATTTTAA : AGCAGATATATGGTCATTTGGAATAACAGCCCTTGAACTTGCTCATGGTCATGCACCATTCTCCAAGTACCCACCCATGAAG : GTTCTGCTGATGACCCTACAGAATGCACCTCCAGGCCTGGACTATGAACGGGACAAGAGATTCTCTAAG : TCTTTTAAAGAAATGGTTGCTGCTTGCTTAGTAAAAGATCCAAAGAAGCGTCCGTCTTCTGAGAAGCTTTTGAAGCACCCTTTCTTTAAACAAGCACGAGGACATGATTATTTGGCACGTACAATCCTTGATGGCCTTCCACCTCTAGGTGATCGTTTTAGGATGCTTAAG : GCTAGAGAAGCAGATTATCTTTTACAGAACCAGGCAATGTATGAGGACAAGGACCATTTATCACAG : CAAGAGTATATTCGTGGTATCAGTGCTTGGAATTTCAATCTGGAGGATCTGAAGAACCAAGCTGCTCTT : CTTCCAGATTTTGACGACATTCCAGATGCTGAAGATTCAAGTAACAGGGGGAAGCTAAGGGAGGGGAATGGTGACGTTGGTTCTGTAGTAGAAAGGCATAATCAGTCGAGTGTCCTATCTCACGAG : GATGAGATGAATGGCAATCATGATTTGGATGGTTCTCTTGCTGCATTTCCTATTAAGCCTCTTCAAGCACTCAA : GGGATGTTTTGATATGTGTGAAGATGACATAACTGCTAGTAGTCCAAGTTGGGAAGATACTATGCAATCAGAGTCTAATCAGCAGAATGATATGCTATCACTAGCAAAAGTTGAGGACCAAGATGGTGGAAAAGATGATG : TGGTTCACTGCTACAGGATAACGCTCTTTCACCCAAAAAAGTTGTTACTGATGGAGAGAG : GGAATATCAACATCCAAAGTACCAGTCTGAGCGAAACTATAGCGGCCCACTGCAGTATCGACATAAAAAAGATTTAG : GAGAAGATTCATCAGAAGGAGCTATTGTCCAACGCAAGGGACGTTTTCAAGTCACATCAGCAGATCTAAGTCCCAAG : GAACCTACAAGCTATTTCCTTAACCCAGTTCAGGGAGGTTCTACTAGTGCAATTAATCTAGGTCTAGCAGCTGCTTCACTACTTCCAACATTGCAATGCATTCTACAGCAGAATACTTTGCAAAGG : GAGGAATTAGTGAAGCTGATCAAGTTCGCAGAGCGAGGATCTG : TCAACCCCACAGACTTAGCTGAAGCTGGGACCAGTGATCTCCCGCAG : ATGCCTGCTACTTCTGTTAGAGAGAGAGAACTGCAATCAATGGTCATTCAATTGCAACAAAG : CATTGGAAGTCTTGTGGAAGAGTTGCAGAGACAAAAGATGAAAAATGTTCAG : TTGGAAAAGAAATTGAATCGCTGATAAAAACTAGAGGATATGAAGGCTACACTACATGGTTGGTTAAGTTACTACCCATGGTTGTGCTGGGGCACATCGTTAAGTTACTTGGCGAGTGGGTGGTTGTATTTTTTGTGTACCATATGTGTGAATGTTAAGTAGGCACCCAAATTTTGAGATGCTATTCATTGTCAGAATCTTGATTATCTATTGTAATATACCAATTGGGTATTGTATTTAAGTTGTCCTTCAATATTAATTGAAATTCTAGGAGCAAAAAAAATGCAGCTTGTGTAAATCACCCTTGCGAAACCCAGAACCTTGTTCCGAAATAAACCTAATAATAAACCTCTTAAGGAGGAGTTTG</gDNA_template>
            <first_frame> S  L  Q  *  T  A  K  I  R  S  E  *  P  G  T  T  N  C  N  V  T  T  I  I  S  S  D  S  *  S  S  M  A  E  *  S  N  R  F  I  P  K  F  I  F  H  T  C  C  W  I  S  I  F  R  S  R  S  S  Q  I  Q  S  S  K  F  I  F  C  I  S  P  P  I  G  T  L   : D  C  F  V  S  S  G  V  Y  S  G  I  S  F  *  W  *  I  A  S  S  L  R  L  F  W  Y  S  T  A  F  R  D  C  T  Q  V  E  Y  *  I  I  S  V  S  S  L  T  E  Y  I  G  Q  R  S  S  V  L  F  S  R  T  F  S  S  F  F  R  T  V  D  G  N  I  V  F  E  G  G  Q  G  K  S  L  R  S  R  L  L  G  Y  K  T  C  Q  S  E  R  *  K  S  T  N  Y  I  *  C  I  L  G  I  Y  S  C  *  S  Y  W  *  G  K  F  I  S  *  G  S  W  S  Y  K  I  S  R  G  S  Q  A  K  C  Y  I  I  G  R  S  L  T  F  F  S  L  K  C  L  M  V  F  I  L  Q  Y  N  *  Q  *  W  N  S  Y  R  R  K  S  S  L  S  T  Q  K  I  I  H  Y  M  R  K  L  E  M  V  S  V  Q  L  C  I  G  L  C  A  F  L  L  M  K  L  L  Q  S  R  F  *  I  W  R  S  A  T  M  I  W :   M  E  S  G  E  R  C  R  P  *  S  *  L  I  I  Q  M  Y  C  V  H  T  A  H  S  L  Q  V  T  A  F  G  L  S  C  H  S  W  L  E  D  L  A  F  I  S  *  N  L  L  I  L  M  V  L  K  S  L  *  L  L  H  Y  C  A  R  S  S  K  P  L  Y  I  F  I  T  M  D  T  S  I  E  M  *  R :   L  G  T  F  *  L  I  Q  M  V  L  L  N  W  Q  I  L  E  L  L  L  A  C  L  I  L  V  I  G  S  V  Q  E  I  L  L  L  E  L  R  A   : G  W  L  P  K  *  C  S  N  Y  M  D  M  I  L   : K  Q  I  Y  G  H  L  E  *  Q  P  L  N  L  L  M  V  M  H  H  S  P  S  T  H  P  *  R :   F  C  *  *  P  Y  R  M  H  L  Q  A  W  T  M  N  G  T  R  D  S  L  S :   L  L  K  K  W  L  L  L  A  *  *  K  I  Q  R  S  V  R  L  L  R  S  F  *  S  T  L  S  L  N  K  H  E  D  M  I  I  W  H  V  Q  S  L  M  A  F  H  L  *  V  I  V  L  G  C  L  R :   L  E  K  Q  I  I  F  Y  R  T  R  Q  C  M  R  T  R  T  I  Y  H  S :   K  S  I  F  V  V  S  V  L  G  I  S  I  W  R  I  *  R  T  K  L  L  F :   F  Q  I  L  T  T  F  Q  M  L  K  I  Q  V  T  G  G  S  *  G  R  G  M  V  T  L  V  L  *  *  K  G  I  I  S  R  V  S  Y  L  T  R :   M  R  *  M  A  I  M  I  W  M  V  L  L  L  H  F  L  L  S  L  F  K  H  S   : R  D  V  L  I  C  V  K  M  T  *  L  L  V  V  Q  V  G  K  I  L  C  N  Q  S  L  I  S  R  M  I  C  Y  H  *  Q  K  L  R  T  K  M  V  E  K  M  M  :  W  F  T  A  T  G  *  R  S  F  T  Q  K  S  C  Y  *  W  R  E  :  G  I  S  T  S  K  V  P  V  *  A  K  L  *  R  P  T  A  V  S  T  *  K  R  F  R :   R  R  F  I  R  R  S  Y  C  P  T  Q  G  T  F  S  S  H  I  S  R  S  K  S  Q   : G  T  Y  K  L  F  P  *  P  S  S  G  R  F  Y  *  C  N  *  S  R  S  S  S  C  F  T  T  S  N  I  A  M  H  S  T  A  E  Y  F  A  K   : G  G  I  S  E  A  D  Q  V  R  R  A  R  I  C :   Q  P  H  R  L  S  *  S  W  D  Q  *  S  P  A   : D  A  C  Y  F  C  *  R  E  R  T  A  I  N  G  H  S  I  A  T  K  :  H  W  K  S  C  G  R  V  A  E  T  K  D  E  K  C  S   : V  G  K  E  I  E  S  L  I  K  T  R  G  Y  E  G  Y  T  T  W  L  V  K  L  L  P  M  V  V  L  G  H  I  V  K  L  L  G  E  W  V  V  V  F  F  V  Y  H  M  C  E  C  *  V  G  T  Q  I  L  R  C  Y  S  L  S  E  S  *  L  S  I  V  I  Y  Q  L  G  I  V  F  K  L  S  F  N  I  N  *  N  S  R  S  K  K  N  A  A  C  V  N  H  P  C  E  T  Q  N  L  V  P  K  *  T  *  *  *  T  S  *  G  G  V   </first_frame>
            <second_frame>  L  F  N  K  R  R  R  F  D  Q  S  S  R  G  R  L  T  A  T  *  Q  L  *  Y  L  P  I  P  N  H  Q  W  R  S  S  P  T  V  S  S  P  N  L  S  S  I  R  V  V  G  F  R  F  S  G  Q  G  L  V  R  F  S  P  R  N  S  S  F  A  Y  H  L  P  S  E  P  *  :  I  A  L  S  V  L  E  C  T  Q  A  S  A  S  S  G  R  L  H  L  V  F  D  Y  F  G  T  P  L  H  F  G  I  V  L  R  S  N  I  R  L  S  L  *  A  V  S  L  N  I  L  A  S  V  H  L  S  Y  F  H  G  H  F  Q  V  F  S  E  P  L  T  V  I  L  C  L  K  V  V  K  A  S  H  Y  D  Q  G  C  W  V  I  K  L  V  N  L  R  D  K  S  R  P  I  I  S  S  A  F  *  E  F  I  P  V  E  V  I  G  R  G  S  S  S  H  E  V  A  G  A  I  K  Y  L  V  D  H  K  Q  N  V  I  *  L  E  E  A  S  H  S  F  L  *  S  A  *  W  F  L  Y  C  N  I  T  S  N  D  G  T  A  I  G  E  K  V  P  C  Q  R  K  R  L  Y  T  I  *  G  S  W  R  W  C  Q  C  N  C  V  S  G  S  V  H  S  S  *  *  N  C  C  N  Q  G  S  R  F  G  E  V  Q  Q  *  S   : G  W  N  P  E  R  G  A  D  H  D  L  D  *  S  S  K  C  I  A  C  T  L  L  I  H  C  R  S  Q  P  L  G  C  H  A  I  H  G  W  R  I  L  P  S  Y  H  E  I  F  L  S  *  W  F  *  R  A  C  N  C  Y  I  I  A  R  G  P  Q  S  P  C  I  S  S  L  P  W  T  H  P  *  R  C  K   : G  W  E  H  F  D  *  F  K  W  C  Y  *  I  G  R  F  W  S  C  C  L  H  V  *  Y  W  *  *  A  A  F  K  K  Y  F  C  W  N  S  V  L  :  D  G  S  R  S  D  A  A  T  T  W  I  *  F  *  :  S  R  Y  M  V  I  W  N  N  S  P  *  T  C  S  W  S  C  T  I  L  Q  V  P  T  H  E   : G  S  A  D  D  P  T  E  C  T  S  R  P  G  L  *  T  G  Q  E  I  L  *   : V  F  *  R  N  G  C  C  L  L  S  K  R  S  K  E  A  S  V  F  *  E  A  F  E  A  P  F  L  *  T  S  T  R  T  *  L  F  G  T  Y  N  P  *  W  P  S  T  S  R  *  S  F  *  D  A  *   : G  *  R  S  R  L  S  F  T  E  P  G  N  V  *  G  Q  G  P  F  I  T   : A  R  V  Y  S  W  Y  Q  C  L  E  F  Q  S  G  G  S  E  E  P  S  C  S   : S  S  R  F  *  R  H  S  R  C  *  R  F  K  *  Q  G  E  A  K  G  G  E  W  *  R  W  F  C  S  R  K  A  *  S  V  E  C  P  I  S  R   : G  *  D  E  W  Q  S  *  F  G  W  F  S  C  C  I  S  Y  *  A  S  S  S  T  Q  :  G  M  F  *  Y  V  *  R  *  H  N  C  *  *  S  K  L  G  R  Y  Y  A  I  R  V  *  S  A  E  *  Y  A  I  T  S  K  S  *  G  P  R  W  W  K  R  *  C :   G  S  L  L  Q  D  N  A  L  S  P  K  K  V  V  T  D  G  E  R :   E  Y  Q  H  P  K  Y  Q  S  E  R  N  Y  S  G  P  L  Q  Y  R  H  K  K  D  L   : G  E  D  S  S  E  G  A  I  V  Q  R  K  G  R  F  Q  V  T  S  A  D  L  S  P  K  :  E  P  T  S  Y  F  L  N  P  V  Q  G  G  S  T  S  A  I  N  L  G  L  A  A  A  S  L  L  P  T  L  Q  C  I  L  Q  Q  N  T  L  Q  R  :  E  E  L  V  K  L  I  K  F  A  E  R  G  S   : V  N  P  T  D  L  A  E  A  G  T  S  D  L  P  Q  :  M  P  A  T  S  V  R  E  R  E  L  Q  S  M  V  I  Q  L  Q  Q  S :   I  G  S  L  V  E  E  L  Q  R  Q  K  M  K  N  V  Q  :  L  E  K  K  L  N  R  *  *  K  L  E  D  M  K  A  T  L  H  G  W  L  S  Y  Y  P  W  L  C  W  G  T  S  L  S  Y  L  A  S  G  W  L  Y  F  L  C  T  I  C  V  N  V  K  *  A  P  K  F  *  D  A  I  H  C  Q  N  L  D  Y  L  L  *  Y  T  N  W  V  L  Y  L  S  C  P  S  I  L  I  E  I  L  G  A  K  K  M  Q  L  V  *  I  T  L  A  K  P  R  T  L  F  R  N  K  P  N  N  K  P  L  K  E  E  F  </second_frame>
            <third_frame>   S  S  I  N  G  E  D  S  I  R  V  A  G  D  D  *  L  Q  R  N  N  Y  N  I  F  R  F  L  I  I  N  G  G  V  V  Q  P  F  H  P  Q  I  Y  L  P  Y  V  L  L  D  F  D  F  P  V  K  V  *  S  D  S  V  L  E  I  H  L  L  H  I  T  S  H  R  N  P  R :   L  L  C  Q  F  W  S  V  L  R  H  Q  L  L  V  V  D  C  I  *  S  S  T  I  L  V  L  H  C  I  S  G  L  Y  S  G  R  I  L  D  Y  L  C  E  Q  S  H  *  I  Y  W  P  A  F  I  C  L  I  F  T  D  I  F  K  F  F  Q  N  R  *  R  *  Y  C  V  *  R  W  S  R  Q  V  I  T  I  K  V  V  G  L  *  N  L  S  I  *  E  I  K  V  D  Q  L  Y  L  V  H  F  R  N  L  F  L  L  K  L  L  V  G  E  V  H  L  M  R  *  L  E  L  *  N  I  S  W  I  T  S  K  M  L  Y  N  W  K  K  P  H  I  L  F  S  K  V  L  D  G  F  Y  I  A  I  *  L  A  M  M  E  Q  L  S  E  K  K  F  P  V  N  A  K  D  Y  T  L  Y  E  E  V  G  D  G  V  S  A  T  V  Y  R  A  L  C  I  P  L  N  E  I  V  A  I  K  V  L  D  L  E  K  C  N  N  D  L  :  D  G  I  R  R  E  V  Q  T  M  I  L  I  D  H  P  N  V  L  R  A  H  C  S  F  T  A  G  H  S  L  W  V  V  M  P  F  M  A  G  G  S  C  L  H  I  M  K  S  S  Y  P  D  G  F  E  E  P  V  I  A  T  L  L  R  E  V  L  K  A  L  V  Y  L  H  Y  H  G  H  I  H  R  D  V  K  :  A  G  N  I  L  I  D  S  N  G  A  I  K  L  A  D  F  G  V  A  A  C  M  F  D  T  G  D  R  Q  R  S  R  N  T  F  V  G  T  P  C  W :   M  A  P  E  V  M  Q  Q  L  H  G  Y  D  F  K :   A  D  I  W  S  F  G  I  T  A  L  E  L  A  H  G  H  A  P  F  S  K  Y  P  P  M  K  :  V  L  L  M  T  L  Q  N  A  P  P  G  L  D  Y  E  R  D  K  R  F  S  K  :  S  F  K  E  M  V  A  A  C  L  V  K  D  P  K  K  R  P  S  S  E  K  L  L  K  H  P  F  F  K  Q  A  R  G  H  D  Y  L  A  R  T  I  L  D  G  L  P  P  L  G  D  R  F  R  M  L  K  :  A  R  E  A  D  Y  L  L  Q  N  Q  A  M  Y  E  D  K  D  H  L  S  Q  :  Q  E  Y  I  R  G  I  S  A  W  N  F  N  L  E  D  L  K  N  Q  A  A  L  :  L  P  D  F  D  D  I  P  D  A  E  D  S  S  N  R  G  K  L  R  E  G  N  G  D  V  G  S  V  V  E  R  H  N  Q  S  S  V  L  S  H  E  :  D  E  M  N  G  N  H  D  L  D  G  S  L  A  A  F  P  I  K  P  L  Q  A  L  K :   G  C  F  D  M  C  E  D  D  I  T  A  S  S  P  S  W  E  D  T  M  Q  S  E  S  N  Q  Q  N  D  M  L  S  L  A  K  V  E  D  Q  D  G  G  K  D  D   : V  V  H  C  Y  R  I  T  L  F  H  P  K  K  L  L  L  M  E  R   : G  N  I  N  I  Q  S  T  S  L  S  E  T  I  A  A  H  C  S  I  D  I  K  K  I  *  :  E  K  I  H  Q  K  E  L  L  S  N  A  R  D  V  F  K  S  H  Q  Q  I  *  V  P  R :   N  L  Q  A  I  S  L  T  Q  F  R  E  V  L  L  V  Q  L  I  *  V  *  Q  L  L  H  Y  F  Q  H  C  N  A  F  Y  S  R  I  L  C  K  G :   R  N  *  *  S  *  S  S  S  Q  S  E  D  L  :  S  T  P  Q  T  *  L  K  L  G  P  V  I  S  R  R :   C  L  L  L  L  L  E  R  E  N  C  N  Q  W  S  F  N  C  N  K   : A  L  E  V  L  W  K  S  C  R  D  K  R  *  K  M  F  S :   W  K  R  N  *  I  A  D  K  N  *  R  I  *  R  L  H  Y  M  V  G  *  V  T  T  H  G  C  A  G  A  H  R  *  V  T  W  R  V  G  G  C  I  F  C  V  P  Y  V  *  M  L  S  R  H  P  N  F  E  M  L  F  I  V  R  I  L  I  I  Y  C  N  I  P  I  G  Y  C  I  *  V  V  L  Q  Y  *  L  K  F  *  E  Q  K  K  C  S  L  C  K  S  P  L  R  N  P  E  P  C  S  E  I  N  L  I  I  N  L  L  R  R  S  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0190P16.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54069" stop="54245"/>
                    <exon start="54943" stop="55197"/>
                    <exon start="55557" stop="55681"/>
                    <exon start="55800" stop="55844"/>
                    <exon start="55928" stop="56009"/>
                    <exon start="56110" stop="56178"/>
                    <exon start="56245" stop="56415"/>
                    <exon start="56520" stop="56585"/>
                    <exon start="57716" stop="57784"/>
                    <exon start="57883" stop="58008"/>
                    <exon start="58210" stop="58283"/>
                    <exon start="59054" stop="59193"/>
                    <exon start="59261" stop="59320"/>
                    <exon start="59921" stop="59997"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1533</number_coding_nucleotides>
                  <number_encoded_amino_acids>511</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LAMMEQLSEKKFPVNAKDYTLYEEVGDGVSATVYRALCIPLNEIVAIKVLDLEKCNNDLDGIRREVQTMILIDHPNVLRAHCSFTAGHSLWVVMPFMAGGSCLHIMKSSYPDGFEEPVIATLLREVLKALVYLHYHGHIHRDVKAGNILIDSNGAIKLADFGVAACMFDTGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKRFSKSFKEMVAACLVKDPKKRPSSEKLLKHPFFKQARGHDYLARTILDGLPPLGDRFRMLKAREADYLLQNQAMYEDKDHLSQQEYIRGISAWNFNLEDLKNQAALLPDFDDIPDAEDSSNRGKLREGNGDVGSVVERHNQSSVLSHEDEMNGNHDLDGSLAAFPIKPLQALKGCFDMCEDDITASSPSWEDTMQSESNQQNDMLSLAKVEDQDGGKDDVVHCYRITLFHPKKLLLMERGNINIQSTSLSETIAAHCSIDIKKI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0190P16.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62479" stop="62520"/>
                    <exon start="62591" stop="62642"/>
                    <exon start="62830" stop="62987"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RERTAINGHSIATKHWKSCGRVAETKDEKCSVGKEIESLIKTRGYEGYTTWLVKLLPMVVLGHIVKLLGEWVVVFFVYHMCEC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0190P16.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53714" stop="53908"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AVSLNILASVHLSYFHGHFQVFSEPLTVILCLKVVKASHYDQGCWVIKLVNLRDKSRPIISSAF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="52875" e_stop="53106"/>
            <exon e_start="53582" e_stop="54245"/>
            <exon e_start="54943" e_stop="55197"/>
            <exon e_start="55557" e_stop="55681"/>
            <exon e_start="55800" e_stop="55844"/>
            <exon e_start="55928" e_stop="56009"/>
            <exon e_start="56110" e_stop="56178"/>
            <exon e_start="56245" e_stop="56415"/>
            <exon e_start="56520" e_stop="56585"/>
            <exon e_start="57716" e_stop="57784"/>
            <exon e_start="57883" e_stop="58008"/>
            <exon e_start="58210" e_stop="58283"/>
            <exon e_start="59054" e_stop="59320"/>
            <exon e_start="59921" e_stop="59997"/>
            <exon e_start="60358" e_stop="60534"/>
            <exon e_start="60587" e_stop="60620"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.891" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.925" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.931" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.898" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.456" acc_prob="0.844" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.961" e_score="0.985"/>
          <exon-intron don_prob="0.611" acc_prob="0.798" e_score="0.961"/>
          <exon-intron don_prob="0.000" acc_prob="0.651" e_score="0.927"/>
          <exon-only e_score="0.794"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52875" e_stop="53106" e_length="232"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.891">
            <gDNA_intron_boundary i_start="53107" i_stop="53581" i_length="475"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="53582" e_stop="54245" e_length="664"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.996">
            <gDNA_intron_boundary i_start="54246" i_stop="54942" i_length="697"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="54943" e_stop="55197" e_length="255"/>
          </exon>
          <intron i_serial="3" don_prob="0.925" acc_prob="0.996">
            <gDNA_intron_boundary i_start="55198" i_stop="55556" i_length="359"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="55557" e_stop="55681" e_length="125"/>
          </exon>
          <intron i_serial="4" don_prob="0.931" acc_prob="0.997">
            <gDNA_intron_boundary i_start="55682" i_stop="55799" i_length="118"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="55800" e_stop="55844" e_length="45"/>
          </exon>
          <intron i_serial="5" don_prob="0.988" acc_prob="0.898">
            <gDNA_intron_boundary i_start="55845" i_stop="55927" i_length="83"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="55928" e_stop="56009" e_length="82"/>
          </exon>
          <intron i_serial="6" don_prob="0.985" acc_prob="0.999">
            <gDNA_intron_boundary i_start="56010" i_stop="56109" i_length="100"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="56110" e_stop="56178" e_length="69"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.985">
            <gDNA_intron_boundary i_start="56179" i_stop="56244" i_length="66"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="56245" e_stop="56415" e_length="171"/>
          </exon>
          <intron i_serial="8" don_prob="0.949" acc_prob="0.997">
            <gDNA_intron_boundary i_start="56416" i_stop="56519" i_length="104"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="56520" e_stop="56585" e_length="66"/>
          </exon>
          <intron i_serial="9" don_prob="0.456" acc_prob="0.844">
            <gDNA_intron_boundary i_start="56586" i_stop="57715" i_length="1130"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="57716" e_stop="57784" e_length="69"/>
          </exon>
          <intron i_serial="10" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="57785" i_stop="57882" i_length="98"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="57883" e_stop="58008" e_length="126"/>
          </exon>
          <intron i_serial="11" don_prob="0.997" acc_prob="0.987">
            <gDNA_intron_boundary i_start="58009" i_stop="58209" i_length="201"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="58210" e_stop="58283" e_length="74"/>
          </exon>
          <intron i_serial="12" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="58284" i_stop="59053" i_length="770"/>
          </intron>
          <exon e_serial="13" e_score="0.985">
            <gDNA_exon_boundary e_start="59054" e_stop="59320" e_length="267"/>
          </exon>
          <intron i_serial="13" don_prob="0.995" acc_prob="0.961">
            <gDNA_intron_boundary i_start="59321" i_stop="59920" i_length="600"/>
          </intron>
          <exon e_serial="14" e_score="0.961">
            <gDNA_exon_boundary e_start="59921" e_stop="59997" e_length="77"/>
          </exon>
          <intron i_serial="14" don_prob="0.611" acc_prob="0.798">
            <gDNA_intron_boundary i_start="59998" i_stop="60357" i_length="360"/>
          </intron>
          <exon e_serial="15" e_score="0.927">
            <gDNA_exon_boundary e_start="60358" e_stop="60534" e_length="177"/>
          </exon>
          <intron i_serial="15" don_prob="0.000" acc_prob="0.651">
            <gDNA_intron_boundary i_start="60535" i_stop="60586" i_length="52"/>
          </intron>
          <exon e_serial="16" e_score="0.794">
            <gDNA_exon_boundary e_start="60587" e_stop="60620" e_length="34"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52875" stop="53106"/>
              <exon start="53582" stop="53878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52881" stop="53106"/>
              <exon start="53582" stop="53967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52883" stop="53106"/>
              <exon start="53582" stop="53767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52896" stop="53106"/>
              <exon start="53582" stop="54079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52898" stop="53106"/>
              <exon start="53582" stop="54079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52920" stop="53106"/>
              <exon start="53582" stop="54002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52995" stop="53106"/>
              <exon start="53582" stop="54245"/>
              <exon start="54943" stop="54999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53041" stop="53106"/>
              <exon start="53582" stop="54083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54116" stop="54245"/>
              <exon start="54943" stop="55197"/>
              <exon start="55557" stop="55681"/>
              <exon start="55800" stop="55844"/>
              <exon start="55928" stop="56009"/>
              <exon start="56110" stop="56138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574304" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54154" stop="54245"/>
              <exon start="54943" stop="55197"/>
              <exon start="55557" stop="55681"/>
              <exon start="55800" stop="55844"/>
              <exon start="55928" stop="56009"/>
              <exon start="56110" stop="56139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54955" stop="55197"/>
              <exon start="55557" stop="55681"/>
              <exon start="55800" stop="55844"/>
              <exon start="55928" stop="56009"/>
              <exon start="56110" stop="56178"/>
              <exon start="56245" stop="56259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55143" stop="55197"/>
              <exon start="55557" stop="55681"/>
              <exon start="55800" stop="55844"/>
              <exon start="55928" stop="56009"/>
              <exon start="56110" stop="56178"/>
              <exon start="56245" stop="56415"/>
              <exon start="56520" stop="56544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55948" stop="56009"/>
              <exon start="56110" stop="56178"/>
              <exon start="56245" stop="56415"/>
              <exon start="56520" stop="56585"/>
              <exon start="57716" stop="57784"/>
              <exon start="57883" stop="58008"/>
              <exon start="58210" stop="58253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56117" stop="56178"/>
              <exon start="56245" stop="56415"/>
              <exon start="56520" stop="56585"/>
              <exon start="57716" stop="57784"/>
              <exon start="57883" stop="58008"/>
              <exon start="58210" stop="58283"/>
              <exon start="59054" stop="59164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56169" stop="56178"/>
              <exon start="56245" stop="56415"/>
              <exon start="56520" stop="56585"/>
              <exon start="57716" stop="57784"/>
              <exon start="57883" stop="58008"/>
              <exon start="58210" stop="58283"/>
              <exon start="59054" stop="59166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56533" stop="56585"/>
              <exon start="57716" stop="57784"/>
              <exon start="57883" stop="58008"/>
              <exon start="58210" stop="58283"/>
              <exon start="59054" stop="59155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57729" stop="57784"/>
              <exon start="57883" stop="58008"/>
              <exon start="58210" stop="58283"/>
              <exon start="59054" stop="59320"/>
              <exon start="59921" stop="59997"/>
              <exon start="60358" stop="60419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57971" stop="58008"/>
              <exon start="58210" stop="58283"/>
              <exon start="59054" stop="59320"/>
              <exon start="59921" stop="59997"/>
              <exon start="60358" stop="60534"/>
              <exon start="60587" stop="60620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609886" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCTTCAATAAACGGCGAAGATTCGATCAGAGTAGCCGGGGACGACTAACTGCAACGTAACAACTATAATATCTTCCGATTCCTAATCATCAATGGCGGAGTAGTCCAACCGTTTCATCCCCAAATTTATCTTCCATACGTGTTGTTGGATTTCGATTTTCCGGTCAAGGTCTAGTCAGATTCAGTCCTCGAAATTCATCTTTTGCATATCACCTCCCATCGGAACCCTAG : ATTGCTTTGTCAGTTCTGGAGTGTACTCAGGCATCAGCTTCTAGTGGTAGATTGCATCTAGTCTTCGACTATTTTGGTACTCCACTGCATTTCGGGATTGTACTCAGGTCGAATATTAGATTATCTCTGTGAGCAGTCTCACTGAATATATTGGCCAGCGTTCATCTGTCTTATTTTCACGGACATTTTCAAGTTTTTTCAGAACCGTTGACGGTAATATTGTGTTTGAAGGTGGTCAAGGCAAGTCATTACGATCAAGGTTGTTGGGTTATAAAACTTGTCAATCTGAGAGATAAAAGTCGACCAATTATATCTAGTGCATTTTAGGAATTTATTCCTGTTGAAGTTATTGGTAGGGGAAGTTCATCTCATGAGGTAGCTGGAGCTATAAAATATCTCGTGGATCACAAGCAAAATGTTATATAATTGGAAGAAGCCTCACATTCTTTTCTCTAAAGTGCTTGATGGTTTTTATATTGCAATATAACTAGCAATGATGGAACAGCTATCGGAGAAAAAGTTCCCTGTCAACGCAAAAGATTATACACTATATGAGGAAGTTGGAGATGGTGTCAGTGCAACTGTGTATCGGGCTCTGTGCATTCCTCTTAATGAAATTGTTGCAATCAAGGTTCTAGATTTGGAGAAGTGCAACAATGATCTG : GATGGAATCCGGAGAGAGGTGCAGACCATGATCTTGATTGATCATCCAAATGTATTGCGTGCACACTGCTCATTCACTGCAGGTCACAGCCTTTGGGTTGTCATGCCATTCATGGCTGGAGGATCTTGCCTTCATATCATGAAATCTTCTTATCCTGATGGTTTTGAAGAGCCTGTAATTGCTACATTATTGCGCGAGGTCCTCAAAGCCCTTGTATATCTTCATTACCATGGACACATCCATAGAGATGTAAAG : GCTGGGAACATTTTGATTGATTCAAATGGTGCTATTAAATTGGCAGATTTTGGAGTTGCTGCTTGCATGTTTGATACTGGTGATAGGCAGCGTTCAAGAAATACTTTTGTTGGAACTCCGTGCTG : GATGGCTCCCGAAGTGATGCAGCAACTACATGGATATGATTTTAA : AGCAGATATATGGTCATTTGGAATAACAGCCCTTGAACTTGCTCATGGTCATGCACCATTCTCCAAGTACCCACCCATGAAG : GTTCTGCTGATGACCCTACAGAATGCACCTCCAGGCCTGGACTATGAACGGGACAAGAGATTCTCTAAG : TCTTTTAAAGAAATGGTTGCTGCTTGCTTAGTAAAAGATCCAAAGAAGCGTCCGTCTTCTGAGAAGCTTTTGAAGCACCCTTTCTTTAAACAAGCACGAGGACATGATTATTTGGCACGTACAATCCTTGATGGCCTTCCACCTCTAGGTGATCGTTTTAGGATGCTTAAG : GCTAGAGAAGCAGATTATCTTTTACAGAACCAGGCAATGTATGAGGACAAGGACCATTTATCACAG : CAAGAGTATATTCGTGGTATCAGTGCTTGGAATTTCAATCTGGAGGATCTGAAGAACCAAGCTGCTCTT : CTTCCAGATTTTGACGACATTCCAGATGCTGAAGATTCAAGTAACAGGGGGAAGCTAAGGGAGGGGAATGGTGACGTTGGTTCTGTAGTAGAAAGGCATAATCAGTCGAGTGTCCTATCTCACGAG : GATGAGATGAATGGCAATCATGATTTGGATGGTTCTCTTGCTGCATTTCCTATTAAGCCTCTTCAAGCACTCAA : GGGATGTTTTGATATGTGTGAAGATGACATAACTGCTAGTAGTCCAAGTTGGGAAGATACTATGCAATCAGAGTCTAATCAGCAGAATGATATGCTATCACTAGCAAAAGTTGAGGACCAAGATGGTGGAAAAGATGATGGTGAGAATCTGCGACAGAGTAGCTCCTTGCCACGTTCTGTTATTCCTGGGCATAAAAAGTTTTTTAGTGGTTCACTGCTACAGGATAACGCTCTTTCACCCAAAAAAGTTGTTACTGATGGAGAGAG : GGAATATCAACATCCAAAGTACCAGTCTGAGCGAAACTATAGCGGCCCACTGCAGTATCGACATAAAAAAGATTTAG : GAGAAGATTCATCAGAAGGAGCTATTGTCCAACGCAAGGGACGTTTTCAAGTCACATCAGCAGATCTAAGTCCCAAGGTATACATACTGTGCCTTCTTGCATTGATTGTCAGGTCAGCTATAATAATGCATTATGAAGGGGATTTTTCTTCAGTGACCAGATTTGGATTTTTCTTCA : CATGAAAAAAAAACACCAAATCACTTGCAAATTA</gDNA_template>
            <first_frame> S  L  Q  *  T  A  K  I  R  S  E  *  P  G  T  T  N  C  N  V  T  T  I  I  S  S  D  S  *  S  S  M  A  E  *  S  N  R  F  I  P  K  F  I  F  H  T  C  C  W  I  S  I  F  R  S  R  S  S  Q  I  Q  S  S  K  F  I  F  C  I  S  P  P  I  G  T  L   : D  C  F  V  S  S  G  V  Y  S  G  I  S  F  *  W  *  I  A  S  S  L  R  L  F  W  Y  S  T  A  F  R  D  C  T  Q  V  E  Y  *  I  I  S  V  S  S  L  T  E  Y  I  G  Q  R  S  S  V  L  F  S  R  T  F  S  S  F  F  R  T  V  D  G  N  I  V  F  E  G  G  Q  G  K  S  L  R  S  R  L  L  G  Y  K  T  C  Q  S  E  R  *  K  S  T  N  Y  I  *  C  I  L  G  I  Y  S  C  *  S  Y  W  *  G  K  F  I  S  *  G  S  W  S  Y  K  I  S  R  G  S  Q  A  K  C  Y  I  I  G  R  S  L  T  F  F  S  L  K  C  L  M  V  F  I  L  Q  Y  N  *  Q  *  W  N  S  Y  R  R  K  S  S  L  S  T  Q  K  I  I  H  Y  M  R  K  L  E  M  V  S  V  Q  L  C  I  G  L  C  A  F  L  L  M  K  L  L  Q  S  R  F  *  I  W  R  S  A  T  M  I  W :   M  E  S  G  E  R  C  R  P  *  S  *  L  I  I  Q  M  Y  C  V  H  T  A  H  S  L  Q  V  T  A  F  G  L  S  C  H  S  W  L  E  D  L  A  F  I  S  *  N  L  L  I  L  M  V  L  K  S  L  *  L  L  H  Y  C  A  R  S  S  K  P  L  Y  I  F  I  T  M  D  T  S  I  E  M  *  R :   L  G  T  F  *  L  I  Q  M  V  L  L  N  W  Q  I  L  E  L  L  L  A  C  L  I  L  V  I  G  S  V  Q  E  I  L  L  L  E  L  R  A   : G  W  L  P  K  *  C  S  N  Y  M  D  M  I  L   : K  Q  I  Y  G  H  L  E  *  Q  P  L  N  L  L  M  V  M  H  H  S  P  S  T  H  P  *  R :   F  C  *  *  P  Y  R  M  H  L  Q  A  W  T  M  N  G  T  R  D  S  L  S :   L  L  K  K  W  L  L  L  A  *  *  K  I  Q  R  S  V  R  L  L  R  S  F  *  S  T  L  S  L  N  K  H  E  D  M  I  I  W  H  V  Q  S  L  M  A  F  H  L  *  V  I  V  L  G  C  L  R :   L  E  K  Q  I  I  F  Y  R  T  R  Q  C  M  R  T  R  T  I  Y  H  S :   K  S  I  F  V  V  S  V  L  G  I  S  I  W  R  I  *  R  T  K  L  L  F :   F  Q  I  L  T  T  F  Q  M  L  K  I  Q  V  T  G  G  S  *  G  R  G  M  V  T  L  V  L  *  *  K  G  I  I  S  R  V  S  Y  L  T  R :   M  R  *  M  A  I  M  I  W  M  V  L  L  L  H  F  L  L  S  L  F  K  H  S   : R  D  V  L  I  C  V  K  M  T  *  L  L  V  V  Q  V  G  K  I  L  C  N  Q  S  L  I  S  R  M  I  C  Y  H  *  Q  K  L  R  T  K  M  V  E  K  M  M  V  R  I  C  D  R  V  A  P  C  H  V  L  L  F  L  G  I  K  S  F  L  V  V  H  C  Y  R  I  T  L  F  H  P  K  K  L  L  L  M  E  R   : G  N  I  N  I  Q  S  T  S  L  S  E  T  I  A  A  H  C  S  I  D  I  K  K  I  *  :  E  K  I  H  Q  K  E  L  L  S  N  A  R  D  V  F  K  S  H  Q  Q  I  *  V  P  R  Y  T  Y  C  A  F  L  H  *  L  S  G  Q  L  *  *  C  I  M  K  G  I  F  L  Q  *  P  D  L  D  F  S  S  :  H  E  K  K  T  P  N  H  L  Q  I  </first_frame>
            <second_frame>  L  F  N  K  R  R  R  F  D  Q  S  S  R  G  R  L  T  A  T  *  Q  L  *  Y  L  P  I  P  N  H  Q  W  R  S  S  P  T  V  S  S  P  N  L  S  S  I  R  V  V  G  F  R  F  S  G  Q  G  L  V  R  F  S  P  R  N  S  S  F  A  Y  H  L  P  S  E  P  *  :  I  A  L  S  V  L  E  C  T  Q  A  S  A  S  S  G  R  L  H  L  V  F  D  Y  F  G  T  P  L  H  F  G  I  V  L  R  S  N  I  R  L  S  L  *  A  V  S  L  N  I  L  A  S  V  H  L  S  Y  F  H  G  H  F  Q  V  F  S  E  P  L  T  V  I  L  C  L  K  V  V  K  A  S  H  Y  D  Q  G  C  W  V  I  K  L  V  N  L  R  D  K  S  R  P  I  I  S  S  A  F  *  E  F  I  P  V  E  V  I  G  R  G  S  S  S  H  E  V  A  G  A  I  K  Y  L  V  D  H  K  Q  N  V  I  *  L  E  E  A  S  H  S  F  L  *  S  A  *  W  F  L  Y  C  N  I  T  S  N  D  G  T  A  I  G  E  K  V  P  C  Q  R  K  R  L  Y  T  I  *  G  S  W  R  W  C  Q  C  N  C  V  S  G  S  V  H  S  S  *  *  N  C  C  N  Q  G  S  R  F  G  E  V  Q  Q  *  S   : G  W  N  P  E  R  G  A  D  H  D  L  D  *  S  S  K  C  I  A  C  T  L  L  I  H  C  R  S  Q  P  L  G  C  H  A  I  H  G  W  R  I  L  P  S  Y  H  E  I  F  L  S  *  W  F  *  R  A  C  N  C  Y  I  I  A  R  G  P  Q  S  P  C  I  S  S  L  P  W  T  H  P  *  R  C  K   : G  W  E  H  F  D  *  F  K  W  C  Y  *  I  G  R  F  W  S  C  C  L  H  V  *  Y  W  *  *  A  A  F  K  K  Y  F  C  W  N  S  V  L  :  D  G  S  R  S  D  A  A  T  T  W  I  *  F  *  :  S  R  Y  M  V  I  W  N  N  S  P  *  T  C  S  W  S  C  T  I  L  Q  V  P  T  H  E   : G  S  A  D  D  P  T  E  C  T  S  R  P  G  L  *  T  G  Q  E  I  L  *   : V  F  *  R  N  G  C  C  L  L  S  K  R  S  K  E  A  S  V  F  *  E  A  F  E  A  P  F  L  *  T  S  T  R  T  *  L  F  G  T  Y  N  P  *  W  P  S  T  S  R  *  S  F  *  D  A  *   : G  *  R  S  R  L  S  F  T  E  P  G  N  V  *  G  Q  G  P  F  I  T   : A  R  V  Y  S  W  Y  Q  C  L  E  F  Q  S  G  G  S  E  E  P  S  C  S   : S  S  R  F  *  R  H  S  R  C  *  R  F  K  *  Q  G  E  A  K  G  G  E  W  *  R  W  F  C  S  R  K  A  *  S  V  E  C  P  I  S  R   : G  *  D  E  W  Q  S  *  F  G  W  F  S  C  C  I  S  Y  *  A  S  S  S  T  Q  :  G  M  F  *  Y  V  *  R  *  H  N  C  *  *  S  K  L  G  R  Y  Y  A  I  R  V  *  S  A  E  *  Y  A  I  T  S  K  S  *  G  P  R  W  W  K  R  *  W  *  E  S  A  T  E  *  L  L  A  T  F  C  Y  S  W  A  *  K  V  F  *  W  F  T  A  T  G  *  R  S  F  T  Q  K  S  C  Y  *  W  R  E  :  G  I  S  T  S  K  V  P  V  *  A  K  L  *  R  P  T  A  V  S  T  *  K  R  F  R :   R  R  F  I  R  R  S  Y  C  P  T  Q  G  T  F  S  S  H  I  S  R  S  K  S  Q  G  I  H  T  V  P  S  C  I  D  C  Q  V  S  Y  N  N  A  L  *  R  G  F  F  F  S  D  Q  I  W  I  F  L  H :   M  K  K  K  H  Q  I  T  C  K  L </second_frame>
            <third_frame>   S  S  I  N  G  E  D  S  I  R  V  A  G  D  D  *  L  Q  R  N  N  Y  N  I  F  R  F  L  I  I  N  G  G  V  V  Q  P  F  H  P  Q  I  Y  L  P  Y  V  L  L  D  F  D  F  P  V  K  V  *  S  D  S  V  L  E  I  H  L  L  H  I  T  S  H  R  N  P  R :   L  L  C  Q  F  W  S  V  L  R  H  Q  L  L  V  V  D  C  I  *  S  S  T  I  L  V  L  H  C  I  S  G  L  Y  S  G  R  I  L  D  Y  L  C  E  Q  S  H  *  I  Y  W  P  A  F  I  C  L  I  F  T  D  I  F  K  F  F  Q  N  R  *  R  *  Y  C  V  *  R  W  S  R  Q  V  I  T  I  K  V  V  G  L  *  N  L  S  I  *  E  I  K  V  D  Q  L  Y  L  V  H  F  R  N  L  F  L  L  K  L  L  V  G  E  V  H  L  M  R  *  L  E  L  *  N  I  S  W  I  T  S  K  M  L  Y  N  W  K  K  P  H  I  L  F  S  K  V  L  D  G  F  Y  I  A  I  *  L  A  M  M  E  Q  L  S  E  K  K  F  P  V  N  A  K  D  Y  T  L  Y  E  E  V  G  D  G  V  S  A  T  V  Y  R  A  L  C  I  P  L  N  E  I  V  A  I  K  V  L  D  L  E  K  C  N  N  D  L  :  D  G  I  R  R  E  V  Q  T  M  I  L  I  D  H  P  N  V  L  R  A  H  C  S  F  T  A  G  H  S  L  W  V  V  M  P  F  M  A  G  G  S  C  L  H  I  M  K  S  S  Y  P  D  G  F  E  E  P  V  I  A  T  L  L  R  E  V  L  K  A  L  V  Y  L  H  Y  H  G  H  I  H  R  D  V  K  :  A  G  N  I  L  I  D  S  N  G  A  I  K  L  A  D  F  G  V  A  A  C  M  F  D  T  G  D  R  Q  R  S  R  N  T  F  V  G  T  P  C  W :   M  A  P  E  V  M  Q  Q  L  H  G  Y  D  F  K :   A  D  I  W  S  F  G  I  T  A  L  E  L  A  H  G  H  A  P  F  S  K  Y  P  P  M  K  :  V  L  L  M  T  L  Q  N  A  P  P  G  L  D  Y  E  R  D  K  R  F  S  K  :  S  F  K  E  M  V  A  A  C  L  V  K  D  P  K  K  R  P  S  S  E  K  L  L  K  H  P  F  F  K  Q  A  R  G  H  D  Y  L  A  R  T  I  L  D  G  L  P  P  L  G  D  R  F  R  M  L  K  :  A  R  E  A  D  Y  L  L  Q  N  Q  A  M  Y  E  D  K  D  H  L  S  Q  :  Q  E  Y  I  R  G  I  S  A  W  N  F  N  L  E  D  L  K  N  Q  A  A  L  :  L  P  D  F  D  D  I  P  D  A  E  D  S  S  N  R  G  K  L  R  E  G  N  G  D  V  G  S  V  V  E  R  H  N  Q  S  S  V  L  S  H  E  :  D  E  M  N  G  N  H  D  L  D  G  S  L  A  A  F  P  I  K  P  L  Q  A  L  K :   G  C  F  D  M  C  E  D  D  I  T  A  S  S  P  S  W  E  D  T  M  Q  S  E  S  N  Q  Q  N  D  M  L  S  L  A  K  V  E  D  Q  D  G  G  K  D  D  G  E  N  L  R  Q  S  S  S  L  P  R  S  V  I  P  G  H  K  K  F  F  S  G  S  L  L  Q  D  N  A  L  S  P  K  K  V  V  T  D  G  E  R :   E  Y  Q  H  P  K  Y  Q  S  E  R  N  Y  S  G  P  L  Q  Y  R  H  K  K  D  L   : G  E  D  S  S  E  G  A  I  V  Q  R  K  G  R  F  Q  V  T  S  A  D  L  S  P  K  V  Y  I  L  C  L  L  A  L  I  V  R  S  A  I  I  M  H  Y  E  G  D  F  S  S  V  T  R  F  G  F  F  F   : T  *  K  K  N  T  K  S  L  A  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0190P16.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54069" stop="54245"/>
                    <exon start="54943" stop="55197"/>
                    <exon start="55557" stop="55681"/>
                    <exon start="55800" stop="55844"/>
                    <exon start="55928" stop="56009"/>
                    <exon start="56110" stop="56178"/>
                    <exon start="56245" stop="56415"/>
                    <exon start="56520" stop="56585"/>
                    <exon start="57716" stop="57784"/>
                    <exon start="57883" stop="58008"/>
                    <exon start="58210" stop="58283"/>
                    <exon start="59054" stop="59320"/>
                    <exon start="59921" stop="59997"/>
                    <exon start="60358" stop="60534"/>
                    <exon start="60587" stop="60591"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1782</number_coding_nucleotides>
                  <number_encoded_amino_acids>594</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LAMMEQLSEKKFPVNAKDYTLYEEVGDGVSATVYRALCIPLNEIVAIKVLDLEKCNNDLDGIRREVQTMILIDHPNVLRAHCSFTAGHSLWVVMPFMAGGSCLHIMKSSYPDGFEEPVIATLLREVLKALVYLHYHGHIHRDVKAGNILIDSNGAIKLADFGVAACMFDTGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKRFSKSFKEMVAACLVKDPKKRPSSEKLLKHPFFKQARGHDYLARTILDGLPPLGDRFRMLKAREADYLLQNQAMYEDKDHLSQQEYIRGISAWNFNLEDLKNQAALLPDFDDIPDAEDSSNRGKLREGNGDVGSVVERHNQSSVLSHEDEMNGNHDLDGSLAAFPIKPLQALKGCFDMCEDDITASSPSWEDTMQSESNQQNDMLSLAKVEDQDGGKDDGENLRQSSSLPRSVIPGHKKFFSGSLLQDNALSPKKVVTDGEREYQHPKYQSERNYSGPLQYRHKKDLGEDSSEGAIVQRKGRFQVTSADLSPKVYILCLLALIVRSAIIMHYEGDFSSVTRFGFFFT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0190P16.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53714" stop="53908"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AVSLNILASVHLSYFHGHFQVFSEPLTVILCLKVVKASHYDQGCWVIKLVNLRDKSRPIISSAF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="56244" e_stop="56415"/>
            <exon e_start="56520" e_stop="56585"/>
            <exon e_start="57716" e_stop="57784"/>
            <exon e_start="57883" e_stop="58008"/>
            <exon e_start="58210" e_stop="58283"/>
            <exon e_start="59054" e_stop="59320"/>
            <exon e_start="59921" e_stop="59997"/>
            <exon e_start="60358" e_stop="60434"/>
            <exon e_start="61705" e_stop="61830"/>
            <exon e_start="61901" e_stop="61943"/>
            <exon e_start="62067" e_stop="62113"/>
            <exon e_start="62459" e_stop="62520"/>
            <exon e_start="62591" e_stop="62642"/>
            <exon e_start="62830" e_stop="63196"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.949" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.456" acc_prob="0.844" e_score="0.970"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.611" acc_prob="0.798" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.886" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.954" e_score="0.984"/>
          <exon-intron don_prob="0.972" acc_prob="0.956" e_score="1.000"/>
          <exon-only e_score="0.959"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56244" e_stop="56415" e_length="172"/>
          </exon>
          <intron i_serial="1" don_prob="0.949" acc_prob="0.997">
            <gDNA_intron_boundary i_start="56416" i_stop="56519" i_length="104"/>
          </intron>
          <exon e_serial="2" e_score="0.970">
            <gDNA_exon_boundary e_start="56520" e_stop="56585" e_length="66"/>
          </exon>
          <intron i_serial="2" don_prob="0.456" acc_prob="0.844">
            <gDNA_intron_boundary i_start="56586" i_stop="57715" i_length="1130"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="57716" e_stop="57784" e_length="69"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="57785" i_stop="57882" i_length="98"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="57883" e_stop="58008" e_length="126"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.987">
            <gDNA_intron_boundary i_start="58009" i_stop="58209" i_length="201"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="58210" e_stop="58283" e_length="74"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="58284" i_stop="59053" i_length="770"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="59054" e_stop="59320" e_length="267"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.961">
            <gDNA_intron_boundary i_start="59321" i_stop="59920" i_length="600"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="59921" e_stop="59997" e_length="77"/>
          </exon>
          <intron i_serial="7" don_prob="0.611" acc_prob="0.798">
            <gDNA_intron_boundary i_start="59998" i_stop="60357" i_length="360"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="60358" e_stop="60434" e_length="77"/>
          </exon>
          <intron i_serial="8" don_prob="0.994" acc_prob="0.984">
            <gDNA_intron_boundary i_start="60435" i_stop="61704" i_length="1270"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="61705" e_stop="61830" e_length="126"/>
          </exon>
          <intron i_serial="9" don_prob="0.993" acc_prob="0.997">
            <gDNA_intron_boundary i_start="61831" i_stop="61900" i_length="70"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="61901" e_stop="61943" e_length="43"/>
          </exon>
          <intron i_serial="10" don_prob="0.886" acc_prob="0.991">
            <gDNA_intron_boundary i_start="61944" i_stop="62066" i_length="123"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="62067" e_stop="62113" e_length="47"/>
          </exon>
          <intron i_serial="11" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="62114" i_stop="62458" i_length="345"/>
          </intron>
          <exon e_serial="12" e_score="0.984">
            <gDNA_exon_boundary e_start="62459" e_stop="62520" e_length="62"/>
          </exon>
          <intron i_serial="12" don_prob="0.990" acc_prob="0.954">
            <gDNA_intron_boundary i_start="62521" i_stop="62590" i_length="70"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="62591" e_stop="62642" e_length="52"/>
          </exon>
          <intron i_serial="13" don_prob="0.972" acc_prob="0.956">
            <gDNA_intron_boundary i_start="62643" i_stop="62829" i_length="187"/>
          </intron>
          <exon e_serial="14" e_score="0.959">
            <gDNA_exon_boundary e_start="62830" e_stop="63196" e_length="367"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56244" stop="56415"/>
              <exon start="56520" stop="56585"/>
              <exon start="57716" stop="57784"/>
              <exon start="57883" stop="58008"/>
              <exon start="58210" stop="58270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56244" stop="56415"/>
              <exon start="56520" stop="56585"/>
              <exon start="57716" stop="57784"/>
              <exon start="57883" stop="58008"/>
              <exon start="58210" stop="58221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56533" stop="56585"/>
              <exon start="57716" stop="57784"/>
              <exon start="57883" stop="58008"/>
              <exon start="58210" stop="58283"/>
              <exon start="59054" stop="59155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57716" stop="57784"/>
              <exon start="57883" stop="58008"/>
              <exon start="58210" stop="58283"/>
              <exon start="59054" stop="59320"/>
              <exon start="59921" stop="59997"/>
              <exon start="60358" stop="60434"/>
              <exon start="61705" stop="61830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57729" stop="57784"/>
              <exon start="57883" stop="58008"/>
              <exon start="58210" stop="58283"/>
              <exon start="59054" stop="59320"/>
              <exon start="59921" stop="59997"/>
              <exon start="60358" stop="60419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57937" stop="58008"/>
              <exon start="58210" stop="58283"/>
              <exon start="59054" stop="59320"/>
              <exon start="59921" stop="59997"/>
              <exon start="60358" stop="60434"/>
              <exon start="61705" stop="61830"/>
              <exon start="61901" stop="61943"/>
              <exon start="62067" stop="62113"/>
              <exon start="62459" stop="62473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59058" stop="59320"/>
              <exon start="59921" stop="59997"/>
              <exon start="60358" stop="60434"/>
              <exon start="61705" stop="61830"/>
              <exon start="61901" stop="61915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59190" stop="59320"/>
              <exon start="59921" stop="59997"/>
              <exon start="60358" stop="60434"/>
              <exon start="61705" stop="61830"/>
              <exon start="61901" stop="61943"/>
              <exon start="62067" stop="62113"/>
              <exon start="62459" stop="62520"/>
              <exon start="62591" stop="62613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59921" stop="59997"/>
              <exon start="60358" stop="60434"/>
              <exon start="61705" stop="61830"/>
              <exon start="61901" stop="61943"/>
              <exon start="62067" stop="62113"/>
              <exon start="62459" stop="62489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61794" stop="61830"/>
              <exon start="61901" stop="61943"/>
              <exon start="62067" stop="62113"/>
              <exon start="62459" stop="62520"/>
              <exon start="62591" stop="62642"/>
              <exon start="62830" stop="63067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411432" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62497" stop="62520"/>
              <exon start="62591" stop="62642"/>
              <exon start="62830" stop="63114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62616" stop="62642"/>
              <exon start="62830" stop="63196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406633" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCTTTTAAAGAAATGGTTGCTGCTTGCTTAGTAAAAGATCCAAAGAAGCGTCCGTCTTCTGAGAAGCTTTTGAAGCACCCTTTCTTTAAACAAGCACGAGGACATGATTATTTGGCACGTACAATCCTTGATGGCCTTCCACCTCTAGGTGATCGTTTTAGGATGCTTAAG : GCTAGAGAAGCAGATTATCTTTTACAGAACCAGGCAATGTATGAGGACAAGGACCATTTATCACAG : CAAGAGTATATTCGTGGTATCAGTGCTTGGAATTTCAATCTGGAGGATCTGAAGAACCAAGCTGCTCTT : CTTCCAGATTTTGACGACATTCCAGATGCTGAAGATTCAAGTAACAGGGGGAAGCTAAGGGAGGGGAATGGTGACGTTGGTTCTGTAGTAGAAAGGCATAATCAGTCGAGTGTCCTATCTCACGAG : GATGAGATGAATGGCAATCATGATTTGGATGGTTCTCTTGCTGCATTTCCTATTAAGCCTCTTCAAGCACTCAA : GGGATGTTTTGATATGTGTGAAGATGACATAACTGCTAGTAGTCCAAGTTGGGAAGATACTATGCAATCAGAGTCTAATCAGCAGAATGATATGCTATCACTAGCAAAAGTTGAGGACCAAGATGGTGGAAAAGATGATGGTGAGAATCTGCGACAGAGTAGCTCCTTGCCACGTTCTGTTATTCCTGGGCATAAAAAGTTTTTTAGTGGTTCACTGCTACAGGATAACGCTCTTTCACCCAAAAAAGTTGTTACTGATGGAGAGAG : GGAATATCAACATCCAAAGTACCAGTCTGAGCGAAACTATAGCGGCCCACTGCAGTATCGACATAAAAAAGATTTAG : GAGAAGATTCATCAGAAGGAGCTATTGTCCAACGCAAGGGACGTTTTCAAGTCACATCAGCAGATCTAAGTCCCAAG : GAACCTACAAGCTATTTCCTTAACCCAGTTCAGGGAGGTTCTACTAGTGCAATTAATCTAGGTCTAGCAGCTGCTTCACTACTTCCAACATTGCAATGCATTCTACAGCAGAATACTTTGCAAAGG : GAGGAATTAGTGAAGCTGATCAAGTTCGCAGAGCGAGGATCTG : TCAACCCCACAGACTTAGCTGAAGCTGGGACCAGTGATCTCCCGCAG : ATGCCTGCTACTTCTGTTAGAGAGAGAGAACTGCAATCAATGGTCATTCAATTGCAACAAAG : CATTGGAAGTCTTGTGGAAGAGTTGCAGAGACAAAAGATGAAAAATGTTCAG : TTGGAAAAGAAATTGAATCGCTGATAAAAACTAGAGGATATGAAGGCTACACTACATGGTTGGTTAAGTTACTACCCATGGTTGTGCTGGGGCACATCGTTAAGTTACTTGGCGAGTGGGTGGTTGTATTTTTTGTGTACCATATGTGTGAATGTTAAGTAGGCACCCAAATTTTGAGATGCTATTCATTGTCAGAATCTTGATTATCTATTGTAATATACCAATTGGGTATTGTATTTAAGTTGTCCTTCAATATTAATTGAAATTCTAGGAGCAAAAAAAATGCAGCTTGTGTAAATCACCCTTGCGAAACCCAGAACCTTGTTCCGAAATAAACCTAATAATAAACCTCTTAAGGAGGAGTTTG</gDNA_template>
            <first_frame> V  F  *  R  N  G  C  C  L  L  S  K  R  S  K  E  A  S  V  F  *  E  A  F  E  A  P  F  L  *  T  S  T  R  T  *  L  F  G  T  Y  N  P  *  W  P  S  T  S  R  *  S  F  *  D  A  *   : G  *  R  S  R  L  S  F  T  E  P  G  N  V  *  G  Q  G  P  F  I  T   : A  R  V  Y  S  W  Y  Q  C  L  E  F  Q  S  G  G  S  E  E  P  S  C  S   : S  S  R  F  *  R  H  S  R  C  *  R  F  K  *  Q  G  E  A  K  G  G  E  W  *  R  W  F  C  S  R  K  A  *  S  V  E  C  P  I  S  R   : G  *  D  E  W  Q  S  *  F  G  W  F  S  C  C  I  S  Y  *  A  S  S  S  T  Q  :  G  M  F  *  Y  V  *  R  *  H  N  C  *  *  S  K  L  G  R  Y  Y  A  I  R  V  *  S  A  E  *  Y  A  I  T  S  K  S  *  G  P  R  W  W  K  R  *  W  *  E  S  A  T  E  *  L  L  A  T  F  C  Y  S  W  A  *  K  V  F  *  W  F  T  A  T  G  *  R  S  F  T  Q  K  S  C  Y  *  W  R  E  :  G  I  S  T  S  K  V  P  V  *  A  K  L  *  R  P  T  A  V  S  T  *  K  R  F  R :   R  R  F  I  R  R  S  Y  C  P  T  Q  G  T  F  S  S  H  I  S  R  S  K  S  Q   : G  T  Y  K  L  F  P  *  P  S  S  G  R  F  Y  *  C  N  *  S  R  S  S  S  C  F  T  T  S  N  I  A  M  H  S  T  A  E  Y  F  A  K   : G  G  I  S  E  A  D  Q  V  R  R  A  R  I  C :   Q  P  H  R  L  S  *  S  W  D  Q  *  S  P  A   : D  A  C  Y  F  C  *  R  E  R  T  A  I  N  G  H  S  I  A  T  K  :  H  W  K  S  C  G  R  V  A  E  T  K  D  E  K  C  S   : V  G  K  E  I  E  S  L  I  K  T  R  G  Y  E  G  Y  T  T  W  L  V  K  L  L  P  M  V  V  L  G  H  I  V  K  L  L  G  E  W  V  V  V  F  F  V  Y  H  M  C  E  C  *  V  G  T  Q  I  L  R  C  Y  S  L  S  E  S  *  L  S  I  V  I  Y  Q  L  G  I  V  F  K  L  S  F  N  I  N  *  N  S  R  S  K  K  N  A  A  C  V  N  H  P  C  E  T  Q  N  L  V  P  K  *  T  *  *  *  T  S  *  G  G  V   </first_frame>
            <second_frame>  S  F  K  E  M  V  A  A  C  L  V  K  D  P  K  K  R  P  S  S  E  K  L  L  K  H  P  F  F  K  Q  A  R  G  H  D  Y  L  A  R  T  I  L  D  G  L  P  P  L  G  D  R  F  R  M  L  K  :  A  R  E  A  D  Y  L  L  Q  N  Q  A  M  Y  E  D  K  D  H  L  S  Q  :  Q  E  Y  I  R  G  I  S  A  W  N  F  N  L  E  D  L  K  N  Q  A  A  L  :  L  P  D  F  D  D  I  P  D  A  E  D  S  S  N  R  G  K  L  R  E  G  N  G  D  V  G  S  V  V  E  R  H  N  Q  S  S  V  L  S  H  E  :  D  E  M  N  G  N  H  D  L  D  G  S  L  A  A  F  P  I  K  P  L  Q  A  L  K :   G  C  F  D  M  C  E  D  D  I  T  A  S  S  P  S  W  E  D  T  M  Q  S  E  S  N  Q  Q  N  D  M  L  S  L  A  K  V  E  D  Q  D  G  G  K  D  D  G  E  N  L  R  Q  S  S  S  L  P  R  S  V  I  P  G  H  K  K  F  F  S  G  S  L  L  Q  D  N  A  L  S  P  K  K  V  V  T  D  G  E  R :   E  Y  Q  H  P  K  Y  Q  S  E  R  N  Y  S  G  P  L  Q  Y  R  H  K  K  D  L   : G  E  D  S  S  E  G  A  I  V  Q  R  K  G  R  F  Q  V  T  S  A  D  L  S  P  K  :  E  P  T  S  Y  F  L  N  P  V  Q  G  G  S  T  S  A  I  N  L  G  L  A  A  A  S  L  L  P  T  L  Q  C  I  L  Q  Q  N  T  L  Q  R  :  E  E  L  V  K  L  I  K  F  A  E  R  G  S   : V  N  P  T  D  L  A  E  A  G  T  S  D  L  P  Q  :  M  P  A  T  S  V  R  E  R  E  L  Q  S  M  V  I  Q  L  Q  Q  S :   I  G  S  L  V  E  E  L  Q  R  Q  K  M  K  N  V  Q  :  L  E  K  K  L  N  R  *  *  K  L  E  D  M  K  A  T  L  H  G  W  L  S  Y  Y  P  W  L  C  W  G  T  S  L  S  Y  L  A  S  G  W  L  Y  F  L  C  T  I  C  V  N  V  K  *  A  P  K  F  *  D  A  I  H  C  Q  N  L  D  Y  L  L  *  Y  T  N  W  V  L  Y  L  S  C  P  S  I  L  I  E  I  L  G  A  K  K  M  Q  L  V  *  I  T  L  A  K  P  R  T  L  F  R  N  K  P  N  N  K  P  L  K  E  E  F  </second_frame>
            <third_frame>   L  L  K  K  W  L  L  L  A  *  *  K  I  Q  R  S  V  R  L  L  R  S  F  *  S  T  L  S  L  N  K  H  E  D  M  I  I  W  H  V  Q  S  L  M  A  F  H  L  *  V  I  V  L  G  C  L  R :   L  E  K  Q  I  I  F  Y  R  T  R  Q  C  M  R  T  R  T  I  Y  H  S :   K  S  I  F  V  V  S  V  L  G  I  S  I  W  R  I  *  R  T  K  L  L  F :   F  Q  I  L  T  T  F  Q  M  L  K  I  Q  V  T  G  G  S  *  G  R  G  M  V  T  L  V  L  *  *  K  G  I  I  S  R  V  S  Y  L  T  R :   M  R  *  M  A  I  M  I  W  M  V  L  L  L  H  F  L  L  S  L  F  K  H  S   : R  D  V  L  I  C  V  K  M  T  *  L  L  V  V  Q  V  G  K  I  L  C  N  Q  S  L  I  S  R  M  I  C  Y  H  *  Q  K  L  R  T  K  M  V  E  K  M  M  V  R  I  C  D  R  V  A  P  C  H  V  L  L  F  L  G  I  K  S  F  L  V  V  H  C  Y  R  I  T  L  F  H  P  K  K  L  L  L  M  E  R   : G  N  I  N  I  Q  S  T  S  L  S  E  T  I  A  A  H  C  S  I  D  I  K  K  I  *  :  E  K  I  H  Q  K  E  L  L  S  N  A  R  D  V  F  K  S  H  Q  Q  I  *  V  P  R :   N  L  Q  A  I  S  L  T  Q  F  R  E  V  L  L  V  Q  L  I  *  V  *  Q  L  L  H  Y  F  Q  H  C  N  A  F  Y  S  R  I  L  C  K  G :   R  N  *  *  S  *  S  S  S  Q  S  E  D  L  :  S  T  P  Q  T  *  L  K  L  G  P  V  I  S  R  R :   C  L  L  L  L  L  E  R  E  N  C  N  Q  W  S  F  N  C  N  K   : A  L  E  V  L  W  K  S  C  R  D  K  R  *  K  M  F  S :   W  K  R  N  *  I  A  D  K  N  *  R  I  *  R  L  H  Y  M  V  G  *  V  T  T  H  G  C  A  G  A  H  R  *  V  T  W  R  V  G  G  C  I  F  C  V  P  Y  V  *  M  L  S  R  H  P  N  F  E  M  L  F  I  V  R  I  L  I  I  Y  C  N  I  P  I  G  Y  C  I  *  V  V  L  Q  Y  *  L  K  F  *  E  Q  K  K  C  S  L  C  K  S  P  L  R  N  P  E  P  C  S  E  I  N  L  I  I  N  L  L  R  R  S  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0190P16.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56245" stop="56415"/>
                    <exon start="56520" stop="56585"/>
                    <exon start="57716" stop="57784"/>
                    <exon start="57883" stop="58008"/>
                    <exon start="58210" stop="58283"/>
                    <exon start="59054" stop="59320"/>
                    <exon start="59921" stop="59997"/>
                    <exon start="60358" stop="60434"/>
                    <exon start="61705" stop="61830"/>
                    <exon start="61901" stop="61943"/>
                    <exon start="62067" stop="62113"/>
                    <exon start="62459" stop="62520"/>
                    <exon start="62591" stop="62642"/>
                    <exon start="62830" stop="62853"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1278</number_coding_nucleotides>
                  <number_encoded_amino_acids>426</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFKEMVAACLVKDPKKRPSSEKLLKHPFFKQARGHDYLARTILDGLPPLGDRFRMLKAREADYLLQNQAMYEDKDHLSQQEYIRGISAWNFNLEDLKNQAALLPDFDDIPDAEDSSNRGKLREGNGDVGSVVERHNQSSVLSHEDEMNGNHDLDGSLAAFPIKPLQALKGCFDMCEDDITASSPSWEDTMQSESNQQNDMLSLAKVEDQDGGKDDGENLRQSSSLPRSVIPGHKKFFSGSLLQDNALSPKKVVTDGEREYQHPKYQSERNYSGPLQYRHKKDLGEDSSEGAIVQRKGRFQVTSADLSPKEPTSYFLNPVQGGSTSAINLGLAAASLLPTLQCILQQNTLQREELVKLIKFAERGSVNPTDLAEAGTSDLPQMPATSVRERELQSMVIQLQQSIGSLVEELQRQKMKNVQLEKKLNR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="64858" PGL_stop="64150"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64858" e_stop="64804"/>
            <exon e_start="64722" e_stop="64679"/>
            <exon e_start="64571" e_stop="64514"/>
            <exon e_start="64429" e_stop="64150"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.713" acc_prob="0.918" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.845" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64858" e_stop="64804" e_length="55"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="64803" i_stop="64723" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64722" e_stop="64679" e_length="44"/>
          </exon>
          <intron i_serial="2" don_prob="0.713" acc_prob="0.918">
            <gDNA_intron_boundary i_start="64678" i_stop="64572" i_length="107"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="64571" e_stop="64514" e_length="58"/>
          </exon>
          <intron i_serial="3" don_prob="0.955" acc_prob="0.845">
            <gDNA_intron_boundary i_start="64513" i_stop="64430" i_length="84"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="64429" e_stop="64150" e_length="280"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64858" stop="64804"/>
              <exon start="64722" stop="64679"/>
              <exon start="64571" stop="64514"/>
              <exon start="64429" stop="64156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64857" stop="64804"/>
              <exon start="64722" stop="64679"/>
              <exon start="64571" stop="64514"/>
              <exon start="64429" stop="64156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64699" stop="64679"/>
              <exon start="64571" stop="64514"/>
              <exon start="64429" stop="64150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350834" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTGTCGATCCATCCAACCTTTAGTGTTTCTGTATTACTGGGCAAACGCGATGAG : CCCATGCTGGTTGCATGCGCTCGGCAGATTATTGAACACATAAG : TAATGCCGGATCTTCTAGGTCTTTGGTTTTATCTCTTGGACTACGCGACCATTCTCTG : CCCACTTTGAAGGGTATCGTTTCGGCTGTCACTGAGAACTGCCTTTGGTGACCTAGGCTCTTGTCAATTTTGGATTGTTCATAGTTGTTATAGCCAGAAGAGAGAAACTTAATGATTGATTCAGTCCTGTGAAGTGTTTATTGCTTACTTTTCCTCAATGATGTTCTATTATTATCAGCAAGACTTCTCTAGACTGTAAAAAAAGTGTTTCTATTGGTGTCCTTATTGAGAGAGGGGCTTTATGACTCACTCTAGAAATGCATTTATTGTGATCATTCGA</gDNA_template>
            <first_frame> G  V  D  P  S  N  L  *  C  F  C  I  T  G  Q  T  R  *   : A  H  A  G  C  M  R  S  A  D  Y  *  T  H  K  :  *  C  R  I  F  *  V  F  G  F  I  S  W  T  T  R  P  F  S   : A  H  F  E  G  Y  R  F  G  C  H  *  E  L  P  L  V  T  *  A  L  V  N  F  G  L  F  I  V  V  I  A  R  R  E  K  L  N  D  *  F  S  P  V  K  C  L  L  L  T  F  P  Q  *  C  S  I  I  I  S  K  T  S  L  D  C  K  K  S  V  S  I  G  V  L  I  E  R  G  A  L  *  L  T  L  E  M  H  L  L  *  S  F   </first_frame>
            <second_frame>  V  S  I  H  P  T  F  S  V  S  V  L  L  G  K  R  D  E  :  P  M  L  V  A  C  A  R  Q  I  I  E  H  I  S :   N  A  G  S  S  R  S  L  V  L  S  L  G  L  R  D  H  S  L  :  P  T  L  K  G  I  V  S  A  V  T  E  N  C  L  W  *  P  R  L  L  S  I  L  D  C  S  *  L  L  *  P  E  E  R  N  L  M  I  D  S  V  L  *  S  V  Y  C  L  L  F  L  N  D  V  L  L  L  S  A  R  L  L  *  T  V  K  K  V  F  L  L  V  S  L  L  R  E  G  L  Y  D  S  L  *  K  C  I  Y  C  D  H  S  </second_frame>
            <third_frame>   C  R  S  I  Q  P  L  V  F  L  Y  Y  W  A  N  A  M  S :   P  C  W  L  H  A  L  G  R  L  L  N  T  *   : V  M  P  D  L  L  G  L  W  F  Y  L  L  D  Y  A  T  I  L  C :   P  L  *  R  V  S  F  R  L  S  L  R  T  A  F  G  D  L  G  S  C  Q  F  W  I  V  H  S  C  Y  S  Q  K  R  E  T  *  *  L  I  Q  S  C  E  V  F  I  A  Y  F  S  S  M  M  F  Y  Y  Y  Q  Q  D  F  S  R  L  *  K  K  C  F  Y  W  C  P  Y  *  E  R  G  F  M  T  H  S  R  N  A  F  I  V  I  I  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0190P16.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64857" stop="64804"/>
                    <exon start="64722" stop="64679"/>
                    <exon start="64571" stop="64514"/>
                    <exon start="64429" stop="64379"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSIHPTFSVSVLLGKRDEPMLVACARQIIEHISNAGSSRSLVLSLGLRDHSLPTLKGIVSAVTENCLW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="66157" PGL_stop="68139"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66157" e_stop="66864"/>
            <exon e_start="67565" e_stop="67718"/>
            <exon e_start="67810" e_stop="68139"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.946" acc_prob="0.999" e_score="0.998"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="0.974"/>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="66157" e_stop="66864" e_length="708"/>
          </exon>
          <intron i_serial="1" don_prob="0.946" acc_prob="0.999">
            <gDNA_intron_boundary i_start="66865" i_stop="67564" i_length="700"/>
          </intron>
          <exon e_serial="2" e_score="0.974">
            <gDNA_exon_boundary e_start="67565" e_stop="67718" e_length="154"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="67719" i_stop="67809" i_length="91"/>
          </intron>
          <exon e_serial="3" e_score="0.930">
            <gDNA_exon_boundary e_start="67810" e_stop="68139" e_length="330"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66157" stop="66692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66300" stop="66864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66724" stop="66864"/>
              <exon start="67565" stop="67718"/>
              <exon start="67810" stop="68139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590893" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCGTCATTCAAAACAAAATAGAGAGATGTTGACCTTAGATGTATAAGTAATTCTAAAGTAATACTTAATTTTCGAGGAAAGTATTATTTTTCATCATTTTAAATCGATTCTTATTTTTTTAATATATTATTCTGATTATTATGATTGACGGAGCTTGAGTGCGTCATTATAGGCTATATTGAAAGCTTTATGTCCCACACTCGCACCATGTCCATGTCAATTTCGATGTACACTACTTCTTCTAGAAAAAATGTCAGCCATTTCATATGTGGCCCATTCCAACACCAGTAGTCTGGTCAAATATGGCCAACATTCCTAATTTCCTATTAAGTATAGTGTAGAAGTCTCATTAATTATTGACTTTATTGGCGCTTTTGGTAGCGATTTTAATTAGCTATGCTACCAAGACAAAATGAACCATTGTCTGATATTTTAGTCATTTGTTAAGCACTTGCCTTTCTGCTACTTAGTTATATCGTCCCTGCGTTTATTTTTGATTTGATTGTTATTCTTTTATGTAGAAATCAATGGTTGAAGTAGAAGTGTTGGTAACTAAGAATGTGAGTCAGGCATGTGCAATAACACCTTCGGTCAGAAATTGCGTGCTCACATCCTCTCTTGTAGCCTGTGTATGGCAAGATATTAACTCTTCAACAATAATTGATCATGATTGCTGGAGTGACGAGTCCCTCTGCATAGACAAGAAG : CTATGGTATGCTCTGGGTAAGCTAAAGGCAGAAAGAGTAGCGTGTAACATCGCTAGGGAGAGTGGATTCAAACTAGCTACTATATGTCCTGGTCTAGTAACTGGTCCTGAATTTATCAGCAGAAATCCAACCCCTACCATTGCCTATCTTAAAG : GGGCTGAAGAAATGTTTAGAAACGGAGCATTGGCGACAGTAGACGTTAATAGATTAGCGGTAGAACATGTATTGGTGTTTGAAGATATGAAGAACACATCTTACAACAGATACATTAGCTTTGATCAAGTTGTTAGGAGTGAAGAGGAACTTGAAAAATTAGCAAGAGAGACGGGAATAGATATTAGGTCGATGAGATCAAACTGGAGGACTAATTCCTCAAACATTGTCAAATTGTCAAATGCAAAGCTTTGCTGCTTAATGTCTACAATACATAGATGTCATAACGAGATCTAGTTCTCATCAATAAATTTATTTTACATACTGAATA</gDNA_template>
            <first_frame> S  V  I  Q  N  K  I  E  R  C  *  P  *  M  Y  K  *  F  *  S  N  T  *  F  S  R  K  V  L  F  F  I  I  L  N  R  F  L  F  F  *  Y  I  I  L  I  I  M  I  D  G  A  *  V  R  H  Y  R  L  Y  *  K  L  Y  V  P  H  S  H  H  V  H  V  N  F  D  V  H  Y  F  F  *  K  K  C  Q  P  F  H  M  W  P  I  P  T  P  V  V  W  S  N  M  A  N  I  P  N  F  L  L  S  I  V  *  K  S  H  *  L  L  T  L  L  A  L  L  V  A  I  L  I  S  Y  A  T  K  T  K  *  T  I  V  *  Y  F  S  H  L  L  S  T  C  L  S  A  T  *  L  Y  R  P  C  V  Y  F  *  F  D  C  Y  S  F  M  *  K  S  M  V  E  V  E  V  L  V  T  K  N  V  S  Q  A  C  A  I  T  P  S  V  R  N  C  V  L  T  S  S  L  V  A  C  V  W  Q  D  I  N  S  S  T  I  I  D  H  D  C  W  S  D  E  S  L  C  I  D  K  K  :  L  W  Y  A  L  G  K  L  K  A  E  R  V  A  C  N  I  A  R  E  S  G  F  K  L  A  T  I  C  P  G  L  V  T  G  P  E  F  I  S  R  N  P  T  P  T  I  A  Y  L  K   : G  A  E  E  M  F  R  N  G  A  L  A  T  V  D  V  N  R  L  A  V  E  H  V  L  V  F  E  D  M  K  N  T  S  Y  N  R  Y  I  S  F  D  Q  V  V  R  S  E  E  E  L  E  K  L  A  R  E  T  G  I  D  I  R  S  M  R  S  N  W  R  T  N  S  S  N  I  V  K  L  S  N  A  K  L  C  C  L  M  S  T  I  H  R  C  H  N  E  I  *  F  S  S  I  N  L  F  Y  I  L  N  </first_frame>
            <second_frame>  P  S  F  K  T  K  *  R  D  V  D  L  R  C  I  S  N  S  K  V  I  L  N  F  R  G  K  Y  Y  F  S  S  F  *  I  D  S  Y  F  F  N  I  L  F  *  L  L  *  L  T  E  L  E  C  V  I  I  G  Y  I  E  S  F  M  S  H  T  R  T  M  S  M  S  I  S  M  Y  T  T  S  S  R  K  N  V  S  H  F  I  C  G  P  F  Q  H  Q  *  S  G  Q  I  W  P  T  F  L  I  S  Y  *  V  *  C  R  S  L  I  N  Y  *  L  Y  W  R  F  W  *  R  F  *  L  A  M  L  P  R  Q  N  E  P  L  S  D  I  L  V  I  C  *  A  L  A  F  L  L  L  S  Y  I  V  P  A  F  I  F  D  L  I  V  I  L  L  C  R  N  Q  W  L  K  *  K  C  W  *  L  R  M  *  V  R  H  V  Q  *  H  L  R  S  E  I  A  C  S  H  P  L  L  *  P  V  Y  G  K  I  L  T  L  Q  Q  *  L  I  M  I  A  G  V  T  S  P  S  A  *  T  R  S :   Y  G  M  L  W  V  S  *  R  Q  K  E  *  R  V  T  S  L  G  R  V  D  S  N  *  L  L  Y  V  L  V  *  *  L  V  L  N  L  S  A  E  I  Q  P  L  P  L  P  I  L  K  :  G  L  K  K  C  L  E  T  E  H  W  R  Q  *  T  L  I  D  *  R  *  N  M  Y  W  C  L  K  I  *  R  T  H  L  T  T  D  T  L  A  L  I  K  L  L  G  V  K  R  N  L  K  N  *  Q  E  R  R  E  *  I  L  G  R  *  D  Q  T  G  G  L  I  P  Q  T  L  S  N  C  Q  M  Q  S  F  A  A  *  C  L  Q  Y  I  D  V  I  T  R  S  S  S  H  Q  *  I  Y  F  T  Y  *  I </second_frame>
            <third_frame>   R  H  S  K  Q  N  R  E  M  L  T  L  D  V  *  V  I  L  K  *  Y  L  I  F  E  E  S  I  I  F  H  H  F  K  S  I  L  I  F  L  I  Y  Y  S  D  Y  Y  D  *  R  S  L  S  A  S  L  *  A  I  L  K  A  L  C  P  T  L  A  P  C  P  C  Q  F  R  C  T  L  L  L  L  E  K  M  S  A  I  S  Y  V  A  H  S  N  T  S  S  L  V  K  Y  G  Q  H  S  *  F  P  I  K  Y  S  V  E  V  S  L  I  I  D  F  I  G  A  F  G  S  D  F  N  *  L  C  Y  Q  D  K  M  N  H  C  L  I  F  *  S  F  V  K  H  L  P  F  C  Y  L  V  I  S  S  L  R  L  F  L  I  *  L  L  F  F  Y  V  E  I  N  G  *  S  R  S  V  G  N  *  E  C  E  S  G  M  C  N  N  T  F  G  Q  K  L  R  A  H  I  L  S  C  S  L  C  M  A  R  Y  *  L  F  N  N  N  *  S  *  L  L  E  *  R  V  P  L  H  R  Q  E   : A  M  V  C  S  G  *  A  K  G  R  K  S  S  V  *  H  R  *  G  E  W  I  Q  T  S  Y  Y  M  S  W  S  S  N  W  S  *  I  Y  Q  Q  K  S  N  P  Y  H  C  L  S  *  R :   G  *  R  N  V  *  K  R  S  I  G  D  S  R  R  *  *  I  S  G  R  T  C  I  G  V  *  R  Y  E  E  H  I  L  Q  Q  I  H  *  L  *  S  S  C  *  E  *  R  G  T  *  K  I  S  K  R  D  G  N  R  Y  *  V  D  E  I  K  L  E  D  *  F  L  K  H  C  Q  I  V  K  C  K  A  L  L  L  N  V  Y  N  T  *  M  S  *  R  D  L  V  L  I  N  K  F  I  L  H  T  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0190P16.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66679" stop="66864"/>
                    <exon start="67565" stop="67718"/>
                    <exon start="67810" stop="68105"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>633</number_coding_nucleotides>
                  <number_encoded_amino_acids>211</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSMVEVEVLVTKNVSQACAITPSVRNCVLTSSLVACVWQDINSSTIIDHDCWSDESLCIDKKLWYALGKLKAERVACNIARESGFKLATICPGLVTGPEFISRNPTPTIAYLKGAEEMFRNGALATVDVNRLAVEHVLVFEDMKNTSYNRYISFDQVVRSEEELEKLARETGIDIRSMRSNWRTNSSNIVKLSNAKLCCLMSTIHRCHNEI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="80691" PGL_stop="82432"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80691" e_stop="80717"/>
            <exon e_start="81697" e_stop="82432"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.815"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.815">
            <gDNA_exon_boundary e_start="80691" e_stop="80717" e_length="27"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="80718" i_stop="81696" i_length="979"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="81697" e_stop="82432" e_length="736"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80691" stop="80717"/>
              <exon start="81697" stop="82432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377576" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTATTTTTATTTTATTTTCCAGAT : TAATTGCAACTTTATAGTAACTTGAGCAAATCAATTGTACAGAGCTAGCATCCTATGCTCCTACTTCATACACGAACCTAATACAAGTGCATTCAGTATCCTAATCAACATAAGCTGGACAATATACTAACACTATCAACAAAAGGAGAACACATCAAGTTGAAGCAACCAGCTTCAGGAGATCTCCTATGGGTTTGTTGAAGTCACTGCACTTACCTTCTCCACCAAGCCTTTTATCTCATTCTCCAACTCTGATTTCTCAGCGCTTGTAATCTTACCCTTGCACTTATCCAATATTGATGCCATCCCTTTCAGCTTCTGCTTGATTAGTTGTACCTGTGACTTCCCCTTACGAGCTTTTAGCGAGGATAGTGGACTCTCAGATTTAGAGGAATAGCTGAGCGTAAAGTTCACATTAGCAGCACCAAAAGGACTTTGCCTTACCGATTCTTTAAAGGCCTGTGCAGCATCTGCACCATGCCTGTAGACAATTCGAACAGAGTTCGAATCACGAAGCACTTCTGTTTCCTCTTCATTCAGCTCTCCAAACTTGTTATATATTCGAATGATTTCATCTTCTGGTGGCAAAGAAAAACCAGTCAAAAATGCCACCAACAGAATCACAGATGAAGCTTCTCTACCATCATCCTCATCTTCTTTTCCCTGACTAGAAGGACCATAGTCTTTTTTGAGTTTGGTAACTTCTGATTTTGCATAATTTGTCTTCCTCTTCTTT</gDNA_template>
            <first_frame> F  L  F  L  F  Y  F  P  D  :  *  L  Q  L  Y  S  N  L  S  K  S  I  V  Q  S  *  H  P  M  L  L  L  H  T  R  T  *  Y  K  C  I  Q  Y  P  N  Q  H  K  L  D  N  I  L  T  L  S  T  K  G  E  H  I  K  L  K  Q  P  A  S  G  D  L  L  W  V  C  *  S  H  C  T  Y  L  L  H  Q  A  F  Y  L  I  L  Q  L  *  F  L  S  A  C  N  L  T  L  A  L  I  Q  Y  *  C  H  P  F  Q  L  L  L  D  *  L  Y  L  *  L  P  L  T  S  F  *  R  G  *  W  T  L  R  F  R  G  I  A  E  R  K  V  H  I  S  S  T  K  R  T  L  P  Y  R  F  F  K  G  L  C  S  I  C  T  M  P  V  D  N  S  N  R  V  R  I  T  K  H  F  C  F  L  F  I  Q  L  S  K  L  V  I  Y  S  N  D  F  I  F  W  W  Q  R  K  T  S  Q  K  C  H  Q  Q  N  H  R  *  S  F  S  T  I  I  L  I  F  F  S  L  T  R  R  T  I  V  F  F  E  F  G  N  F  *  F  C  I  I  C  L  P  L  L  </first_frame>
            <second_frame>  F  Y  F  Y  F  I  F  Q  I :   N  C  N  F  I  V  T  *  A  N  Q  L  Y  R  A  S  I  L  C  S  Y  F  I  H  E  P  N  T  S  A  F  S  I  L  I  N  I  S  W  T  I  Y  *  H  Y  Q  Q  K  E  N  T  S  S  *  S  N  Q  L  Q  E  I  S  Y  G  F  V  E  V  T  A  L  T  F  S  T  K  P  F  I  S  F  S  N  S  D  F  S  A  L  V  I  L  P  L  H  L  S  N  I  D  A  I  P  F  S  F  C  L  I  S  C  T  C  D  F  P  L  R  A  F  S  E  D  S  G  L  S  D  L  E  E  *  L  S  V  K  F  T  L  A  A  P  K  G  L  C  L  T  D  S  L  K  A  C  A  A  S  A  P  C  L  *  T  I  R  T  E  F  E  S  R  S  T  S  V  S  S  S  F  S  S  P  N  L  L  Y  I  R  M  I  S  S  S  G  G  K  E  K  P  V  K  N  A  T  N  R  I  T  D  E  A  S  L  P  S  S  S  S  S  F  P  *  L  E  G  P  *  S  F  L  S  L  V  T  S  D  F  A  *  F  V  F  L  F  F </second_frame>
            <third_frame>   F  I  F  I  L  F  S  R   : L  I  A  T  L  *  *  L  E  Q  I  N  C  T  E  L  A  S  Y  A  P  T  S  Y  T  N  L  I  Q  V  H  S  V  S  *  S  T  *  A  G  Q  Y  T  N  T  I  N  K  R  R  T  H  Q  V  E  A  T  S  F  R  R  S  P  M  G  L  L  K  S  L  H  L  P  S  P  P  S  L  L  S  H  S  P  T  L  I  S  Q  R  L  *  S  Y  P  C  T  Y  P  I  L  M  P  S  L  S  A  S  A  *  L  V  V  P  V  T  S  P  Y  E  L  L  A  R  I  V  D  S  Q  I  *  R  N  S  *  A  *  S  S  H  *  Q  H  Q  K  D  F  A  L  P  I  L  *  R  P  V  Q  H  L  H  H  A  C  R  Q  F  E  Q  S  S  N  H  E  A  L  L  F  P  L  H  S  A  L  Q  T  C  Y  I  F  E  *  F  H  L  L  V  A  K  K  N  Q  S  K  M  P  P  T  E  S  Q  M  K  L  L  Y  H  H  P  H  L  L  F  P  D  *  K  D  H  S  L  F  *  V  W  *  L  L  I  L  H  N  L  S  S  S  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0190P16.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82069" stop="82326"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WTLRFRGIAERKVHISSTKRTLPYRFFKGLCSICTMPVDNSNRVRITKHFCFLFIQLSKLVIYSNDFIFWWQRKTSQKCHQQNHR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0190P16.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81860" stop="82093"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNQLQEISYGFVEVTALTFSTKPFISFSNSDFSALVILPLHLSNIDAIPFSFCLISCTCDFPLRAFSEDSGLSDLEE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="83382" PGL_stop="81675"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83382" e_stop="81675"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="83382" e_stop="81675" e_length="1708"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83382" stop="82928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83382" stop="83014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83151" stop="82595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83070" stop="82209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82713" stop="81961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82433" stop="81675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82433" stop="81689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82433" stop="81716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82433" stop="81716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82432" stop="81952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232101" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCGAGGACAAGAAGGAAGATCAAGTCATTGATGCAAATGACTTCAGCATACCCATTGAGGTTCCCATTCAGGGTCCATCAGAAGAAATTCCTAATTCTGGATCTTCAAAGTTTCCTATGACTGCCTGCGACAAGATTTATCAGAAGAGGAAGCAGAAAAGTGTGGCTGAACTTATGGGAGAGAACGCCAAGCCCAAAGGTAAGAAGACAACTGAAGACGATTCTACACCTTCGTCTGTAGAAACATCCGAGAAGAAAAGGAAGAAGTCTGGTGAGAAAGCTAAAGGTCAAACTGGCAGCTCGATGAGTGTTGATGAAAAAATTGGTAAGAGGGTCAACAAGAAGTCTGGTGACAGTGACTTGGTGAAAACAAAGAAACTTAGTGTTTCAATTCCTGAGAGTGATGAAGTTGGCAACCAGCAAGACAATGCGGGCCCTTTATCAAGGGAAAGAAAGAAGAGCAAGTATTTGTCACCTCCTTATACAAGCCCCAAGTGGAATGCAGGAAAATCAAGCTTTAAGAGAGAACTGGCAATAGAATCACAGAAATTTTCTGATAATTCCAAGATTGGTGAGAGGATGACAAAGGCTGCACGTCTTCTTTTGTCTTCTCCTGATTCGAATGGGAAAGAGGCCTTCAAGGATGACGTTGACAAGAGTTCTGGGATCAATAAGCGAAGCTCTAGGACTTTTGATACCGTGGCTATCAATTCATCTGTGGATGAAGTTTTGTCCGAGGTTCAGTCTACTGCTCTAAACCCTCTTCTGTTGAGGAATGGATCTCTTGAGAAGGCCAGAGGTTTCATTTCCACTTTCAGAAACTCGCTATATTATGATGGATCAAACTACAAGCAGTATCACCAAATGGAAACAGGAAAGAAGAGAAAATCCGCGGGATCAGGAAATCTAATTTCCCAGAGTGATACTGAATCACCAGACTCCATTCCTTCAAAGAAGAGGAAGACAAATTATGCAAAATCAGAAGTTACCAAACTCAAAAAAGACTATGGTCCTTCTAGTCAGGGAAAAGAAGATGAGGATGATGGTAGAGAAGCTTCATCTGTGATTCTGTTGGTGGCATTTTTGACTGGTTTTTCTTTGCCACCAGAAGATGAAATCATTCGAATATATAACAAGTTTGGAGAGCTGAATGAAGAGGAAACAGAAGTGCTTCGTGATTCGAACTCTGTTCGAATTGTCTACAGGCATGGTGCAGATGCTGCACAGGCCTTTAAAGAATCGGTAAGGCAAAGTCCTTTTGGTGCTGCTAATGTGAACTTTACGCTCAGCTATTCCTCTAAATCTGAGAGTCCACTATCCTCGCTAAAAGCTCGTAAGGGGAAGTCACAGGTACAACTAATCAAGCAGAAGCTGAAAGGGATGGCATCAATATTGGATAAGTGCAAGGGTAAGATTACAAGCGCTGAGAAATCAGAGTTGGAGAATGAGATAAAAGGCTTGGTGGAGAAGGTAAGTGCAGTGACTTCAACAAACCCATAGGAGATCTCCTGAAGCTGGTTGCTTCAACTTGATGTGTTCTCCTTTTGTTGATAGTGTTAGTATATTGTCCAGCTTATGTTGATTAGGATACTGAATGCACTTGTATTAGGTTCGTGTATGAAGTAGGAGCATAGGATGCTAGCTCTGTACAATTGATTTGCTCAAGTTACTATAAAGTTGCAATTACTTTGATTAGTTTTTGTTAAGA</gDNA_template>
            <first_frame> L  E  D  K  K  E  D  Q  V  I  D  A  N  D  F  S  I  P  I  E  V  P  I  Q  G  P  S  E  E  I  P  N  S  G  S  S  K  F  P  M  T  A  C  D  K  I  Y  Q  K  R  K  Q  K  S  V  A  E  L  M  G  E  N  A  K  P  K  G  K  K  T  T  E  D  D  S  T  P  S  S  V  E  T  S  E  K  K  R  K  K  S  G  E  K  A  K  G  Q  T  G  S  S  M  S  V  D  E  K  I  G  K  R  V  N  K  K  S  G  D  S  D  L  V  K  T  K  K  L  S  V  S  I  P  E  S  D  E  V  G  N  Q  Q  D  N  A  G  P  L  S  R  E  R  K  K  S  K  Y  L  S  P  P  Y  T  S  P  K  W  N  A  G  K  S  S  F  K  R  E  L  A  I  E  S  Q  K  F  S  D  N  S  K  I  G  E  R  M  T  K  A  A  R  L  L  L  S  S  P  D  S  N  G  K  E  A  F  K  D  D  V  D  K  S  S  G  I  N  K  R  S  S  R  T  F  D  T  V  A  I  N  S  S  V  D  E  V  L  S  E  V  Q  S  T  A  L  N  P  L  L  L  R  N  G  S  L  E  K  A  R  G  F  I  S  T  F  R  N  S  L  Y  Y  D  G  S  N  Y  K  Q  Y  H  Q  M  E  T  G  K  K  R  K  S  A  G  S  G  N  L  I  S  Q  S  D  T  E  S  P  D  S  I  P  S  K  K  R  K  T  N  Y  A  K  S  E  V  T  K  L  K  K  D  Y  G  P  S  S  Q  G  K  E  D  E  D  D  G  R  E  A  S  S  V  I  L  L  V  A  F  L  T  G  F  S  L  P  P  E  D  E  I  I  R  I  Y  N  K  F  G  E  L  N  E  E  E  T  E  V  L  R  D  S  N  S  V  R  I  V  Y  R  H  G  A  D  A  A  Q  A  F  K  E  S  V  R  Q  S  P  F  G  A  A  N  V  N  F  T  L  S  Y  S  S  K  S  E  S  P  L  S  S  L  K  A  R  K  G  K  S  Q  V  Q  L  I  K  Q  K  L  K  G  M  A  S  I  L  D  K  C  K  G  K  I  T  S  A  E  K  S  E  L  E  N  E  I  K  G  L  V  E  K  V  S  A  V  T  S  T  N  P  *  E  I  S  *  S  W  L  L  Q  L  D  V  F  S  F  C  *  *  C  *  Y  I  V  Q  L  M  L  I  R  I  L  N  A  L  V  L  G  S  C  M  K  *  E  H  R  M  L  A  L  Y  N  *  F  A  Q  V  T  I  K  L  Q  L  L  *  L  V  F  V  K  </first_frame>
            <second_frame>  S  R  T  R  R  K  I  K  S  L  M  Q  M  T  S  A  Y  P  L  R  F  P  F  R  V  H  Q  K  K  F  L  I  L  D  L  Q  S  F  L  *  L  P  A  T  R  F  I  R  R  G  S  R  K  V  W  L  N  L  W  E  R  T  P  S  P  K  V  R  R  Q  L  K  T  I  L  H  L  R  L  *  K  H  P  R  R  K  G  R  S  L  V  R  K  L  K  V  K  L  A  A  R  *  V  L  M  K  K  L  V  R  G  S  T  R  S  L  V  T  V  T  W  *  K  Q  R  N  L  V  F  Q  F  L  R  V  M  K  L  A  T  S  K  T  M  R  A  L  Y  Q  G  K  E  R  R  A  S  I  C  H  L  L  I  Q  A  P  S  G  M  Q  E  N  Q  A  L  R  E  N  W  Q  *  N  H  R  N  F  L  I  I  P  R  L  V  R  G  *  Q  R  L  H  V  F  F  C  L  L  L  I  R  M  G  K  R  P  S  R  M  T  L  T  R  V  L  G  S  I  S  E  A  L  G  L  L  I  P  W  L  S  I  H  L  W  M  K  F  C  P  R  F  S  L  L  L  *  T  L  F  C  *  G  M  D  L  L  R  R  P  E  V  S  F  P  L  S  E  T  R  Y  I  M  M  D  Q  T  T  S  S  I  T  K  W  K  Q  E  R  R  E  N  P  R  D  Q  E  I  *  F  P  R  V  I  L  N  H  Q  T  P  F  L  Q  R  R  G  R  Q  I  M  Q  N  Q  K  L  P  N  S  K  K  T  M  V  L  L  V  R  E  K  K  M  R  M  M  V  E  K  L  H  L  *  F  C  W  W  H  F  *  L  V  F  L  C  H  Q  K  M  K  S  F  E  Y  I  T  S  L  E  S  *  M  K  R  K  Q  K  C  F  V  I  R  T  L  F  E  L  S  T  G  M  V  Q  M  L  H  R  P  L  K  N  R  *  G  K  V  L  L  V  L  L  M  *  T  L  R  S  A  I  P  L  N  L  R  V  H  Y  P  R  *  K  L  V  R  G  S  H  R  Y  N  *  S  S  R  S  *  K  G  W  H  Q  Y  W  I  S  A  R  V  R  L  Q  A  L  R  N  Q  S  W  R  M  R  *  K  A  W  W  R  R  *  V  Q  *  L  Q  Q  T  H  R  R  S  P  E  A  G  C  F  N  L  M  C  S  P  F  V  D  S  V  S  I  L  S  S  L  C  *  L  G  Y  *  M  H  L  Y  *  V  R  V  *  S  R  S  I  G  C  *  L  C  T  I  D  L  L  K  L  L  *  S  C  N  Y  F  D  *  F  L  L  R </second_frame>
            <third_frame>   R  G  Q  E  G  R  S  S  H  *  C  K  *  L  Q  H  T  H  *  G  S  H  S  G  S  I  R  R  N  S  *  F  W  I  F  K  V  S  Y  D  C  L  R  Q  D  L  S  E  E  E  A  E  K  C  G  *  T  Y  G  R  E  R  Q  A  Q  R  *  E  D  N  *  R  R  F  Y  T  F  V  C  R  N  I  R  E  E  K  E  E  V  W  *  E  S  *  R  S  N  W  Q  L  D  E  C  *  *  K  N  W  *  E  G  Q  Q  E  V  W  *  Q  *  L  G  E  N  K  E  T  *  C  F  N  S  *  E  *  *  S  W  Q  P  A  R  Q  C  G  P  F  I  K  G  K  K  E  E  Q  V  F  V  T  S  L  Y  K  P  Q  V  E  C  R  K  I  K  L  *  E  R  T  G  N  R  I  T  E  I  F  *  *  F  Q  D  W  *  E  D  D  K  G  C  T  S  S  F  V  F  S  *  F  E  W  E  R  G  L  Q  G  *  R  *  Q  E  F  W  D  Q  *  A  K  L  *  D  F  *  Y  R  G  Y  Q  F  I  C  G  *  S  F  V  R  G  S  V  Y  C  S  K  P  S  S  V  E  E  W  I  S  *  E  G  Q  R  F  H  F  H  F  Q  K  L  A  I  L  *  W  I  K  L  Q  A  V  S  P  N  G  N  R  K  E  E  K  I  R  G  I  R  K  S  N  F  P  E  *  Y  *  I  T  R  L  H  S  F  K  E  E  E  D  K  L  C  K  I  R  S  Y  Q  T  Q  K  R  L  W  S  F  *  S  G  K  R  R  *  G  *  W  *  R  S  F  I  C  D  S  V  G  G  I  F  D  W  F  F  F  A  T  R  R  *  N  H  S  N  I  *  Q  V  W  R  A  E  *  R  G  N  R  S  A  S  *  F  E  L  C  S  N  C  L  Q  A  W  C  R  C  C  T  G  L  *  R  I  G  K  A  K  S  F  W  C  C  *  C  E  L  Y  A  Q  L  F  L  *  I  *  E  S  T  I  L  A  K  S  S  *  G  E  V  T  G  T  T  N  Q  A  E  A  E  R  D  G  I  N  I  G  *  V  Q  G  *  D  Y  K  R  *  E  I  R  V  G  E  *  D  K  R  L  G  G  E  G  K  C  S  D  F  N  K  P  I  G  D  L  L  K  L  V  A  S  T  *  C  V  L  L  L  L  I  V  L  V  Y  C  P  A  Y  V  D  *  D  T  E  C  T  C  I  R  F  V  Y  E  V  G  A  *  D  A  S  S  V  Q  L  I  C  S  S  Y  Y  K  V  A  I  T  L  I  S  F  C  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0190P16.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83382" stop="81883"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1497</number_coding_nucleotides>
                  <number_encoded_amino_acids>499</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LEDKKEDQVIDANDFSIPIEVPIQGPSEEIPNSGSSKFPMTACDKIYQKRKQKSVAELMGENAKPKGKKTTEDDSTPSSVETSEKKRKKSGEKAKGQTGSSMSVDEKIGKRVNKKSGDSDLVKTKKLSVSIPESDEVGNQQDNAGPLSRERKKSKYLSPPYTSPKWNAGKSSFKRELAIESQKFSDNSKIGERMTKAARLLLSSPDSNGKEAFKDDVDKSSGINKRSSRTFDTVAINSSVDEVLSEVQSTALNPLLLRNGSLEKARGFISTFRNSLYYDGSNYKQYHQMETGKKRKSAGSGNLISQSDTESPDSIPSKKRKTNYAKSEVTKLKKDYGPSSQGKEDEDDGREASSVILLVAFLTGFSLPPEDEIIRIYNKFGELNEEETEVLRDSNSVRIVYRHGADAAQAFKESVRQSPFGAANVNFTLSYSSKSESPLSSLKARKGKSQVQLIKQKLKGMASILDKCKGKITSAEKSELENEIKGLVEKVSAVTSTNP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="85554" PGL_stop="87166"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85554" e_stop="85591"/>
            <exon e_start="86919" e_stop="87166"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.500"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.500">
            <gDNA_exon_boundary e_start="85554" e_stop="85591" e_length="38"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="85592" i_stop="86918" i_length="1327"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86919" e_stop="87166" e_length="248"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85554" stop="85591"/>
              <exon start="86919" stop="87166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287766" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCCTTAGTTGTATTTATCTGTTTTACTTCATGATAT : GCAGAATCATAAATATTGATTTTAGAAAATTGGGTACAACTATCTAATAGCTGAATGCTCTTACAAAAACAAAAAAAAACTCAGTAATTTTTCCCAGTTCAAAAAAAAAAAAAGGAATAAGAATGAACATTTACCACAAATTGATTTAAGCAATAGAGACTTTAGCACCAGCTTCTTCGAGCTGTTTCTTAGCATCTTCAGCCTCATCCTTGGAAACACCCTCCTTAAATTTCTTAGGCAATCCTTCA</gDNA_template>
            <first_frame> S  P  *  L  Y  L  S  V  L  L  H  D  M :   Q  N  H  K  Y  *  F  *  K  I  G  Y  N  Y  L  I  A  E  C  S  Y  K  N  K  K  K  L  S  N  F  S  Q  F  K  K  K  K  R  N  K  N  E  H  L  P  Q  I  D  L  S  N  R  D  F  S  T  S  F  F  E  L  F  L  S  I  F  S  L  I  L  G  N  T  L  L  K  F  L  R  Q  S  F  </first_frame>
            <second_frame>  L  L  S  C  I  Y  L  F  Y  F  M  I   : C  R  I  I  N  I  D  F  R  K  L  G  T  T  I  *  *  L  N  A  L  T  K  T  K  K  N  S  V  I  F  P  S  S  K  K  K  K  G  I  R  M  N  I  Y  H  K  L  I  *  A  I  E  T  L  A  P  A  S  S  S  C  F  L  A  S  S  A  S  S  L  E  T  P  S  L  N  F  L  G  N  P  S </second_frame>
            <third_frame>   S  L  V  V  F  I  C  F  T  S  *  Y  :  A  E  S  *  I  L  I  L  E  N  W  V  Q  L  S  N  S  *  M  L  L  Q  K  Q  K  K  T  Q  *  F  F  P  V  Q  K  K  K  K  E  *  E  *  T  F  T  T  N  *  F  K  Q  *  R  L  *  H  Q  L  L  R  A  V  S  *  H  L  Q  P  H  P  W  K  H  P  P  *  I  S  *  A  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0190P16.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86944" stop="87165"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIGYNYLIAECSYKNKKKLSNFSQFKKKKRNKNEHLPQIDLSNRDFSTSFFELFLSIFSLILGNTLLKFLRQSF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="91804" PGL_stop="85706"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91783" e_stop="91014"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="91783" e_stop="91014" e_length="770"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91783" stop="91150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91783" stop="91325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91780" stop="91395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91776" stop="91035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91776" stop="91076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202748" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91776" stop="91152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91776" stop="91613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91775" stop="91014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91775" stop="91039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91775" stop="91049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91775" stop="91137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91773" stop="91046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91772" stop="91134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91771" stop="91038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91771" stop="91039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91771" stop="91251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91769" stop="91165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91769" stop="91207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91768" stop="91165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91767" stop="91293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91767" stop="91315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91767" stop="91329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91765" stop="91033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91765" stop="91033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91763" stop="91424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91759" stop="91154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91757" stop="91342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91755" stop="91194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91754" stop="91338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91752" stop="91241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91734" stop="91185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91715" stop="91335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91663" stop="91180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91653" stop="91100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91595" stop="91037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402214" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91587" stop="91041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91554" stop="91035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284929" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91545" stop="91347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91472" stop="91080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91466" stop="91043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91450" stop="91029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217433" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91435" stop="91023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91418" stop="91053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91418" stop="91053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354526" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTGTATCTCCCTCTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTATGATTTGTGATTGTTCCAGTTTTAATTGTTAGTG</gDNA_template>
            <first_frame> F  C  I  S  L  F  H  S  P  N  F  S  L  A  Q  L  Q  W  L  P  H  Y  P  Q  L  P  F  V  L  P  L  L  F  L  Q  Q  P  Q  A  P  R  T  L  Q  F  P  S  P  P  K  P  *  N  F  P  F  A  L  P  N  C  T  T  A  G  Q  L  S  S  A  L  S  P  P  S  K  H  R  R  R  *  S  S  S  E  M  K  S  P  T  *  P  S  L  M  P  R  N  S  S  S  T  F  R  I  S  L  E  F  Q  P  H  P  S  L  P  L  P  S  S  L  P  L  V  A  Q  P  Q  M  L  Q  L  W  L  R  R  R  R  N  L  M  *  S  S  M  K  C  R  V  M  L  E  L  R  P  L  R  L  L  G  L  *  Q  V  W  H  *  K  R  L  R  N  *  L  K  D  C  L  R  N  L  R  R  V  F  P  R  M  R  L  K  M  L  R  N  N  L  K  K  L  V  L  K  F  L  L  L  K  Q  I  C  G  K  C  S  F  L  V  V  F  S  Q  E  N  S  V  V  R  Y  T  C  T  Q  F  S  Q  I  K  F  F  Q  S  S  L  L  M  I  C  D  C  S  S  F  N  C  *   </first_frame>
            <second_frame>  F  V  S  P  S  F  T  L  P  I  S  L  *  L  S  Y  N  G  F  H  I  I  H  N  Y  P  S  F  S  L  S  Y  F  S  S  N  R  K  L  H  A  R  F  N  F  L  P  H  Q  N  P  R  T  S  H  S  H  S  Q  T  V  P  P  P  G  N  S  R  P  P  S  R  R  R  R  S  T  G  E  G  S  P  A  R  R  *  N  L  Q  L  N  P  R  *  C  P  E  T  R  R  V  P  S  G  *  A  W  S  F  S  R  I  L  R  S  R  C  R  R  R  F  P  W  W  R  S  R  R  C  S  S  C  G  *  G  E  D  G  I  *  C  S  H  R  *  S  A  E  *  C  *  N  C  D  H  *  G  C  *  G  F  N  K  F  G  I  E  R  G  *  G  I  D  *  R  I  A  *  E  I  *  G  G  C  F  Q  G  *  G  *  R  C  *  E  T  T  *  R  S  W  C  *  S  F  Y  C  L  N  K  F  V  V  N  V  R  S  *  L  C  F  R  K  R  I  Q  L  L  D  I  L  V  L  N  F  L  K  S  S  F  F  S  R  L  C  L  *  F  V  I  V  P  V  L  I  V  S  </second_frame>
            <third_frame>   L  Y  L  P  L  S  L  S  Q  F  L  F  S  S  A  T  M  A  S  T  L  S  T  I  T  L  R  S  P  S  P  I  S  P  A  T  A  S  S  T  H  A  S  I  S  F  P  T  K  T  L  E  L  P  I  R  T  P  K  L  Y  H  R  R  A  T  L  V  R  P  L  A  A  V  E  A  P  E  K  V  V  Q  L  G  D  E  I  S  N  L  T  L  A  D  A  Q  K  L  V  E  Y  L  Q  D  K  L  G  V  S  A  A  S  F  A  P  A  A  V  V  A  S  P  G  G  A  A  A  D  A  P  A  V  V  E  E  K  T  E  F  D  V  V  I  D  E  V  P  S  N  A  R  I  A  T  I  K  A  V  R  A  L  T  S  L  A  L  K  E  A  K  E  L  I  E  G  L  P  K  K  F  K  E  G  V  S  K  D  E  A  E  D  A  K  K  Q  L  E  E  A  G  A  K  V  S  I  A  *  T  N  L  W  *  M  F  V  L  S  C  V  F  A  R  E  F  S  C  *  I  Y  L  Y  S  I  F  S  N  Q  V  F  S  V  V  F  A  Y  D  L  *  L  F  Q  F  *  L  L  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0190P16.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91781" stop="91161"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>618</number_coding_nucleotides>
                  <number_encoded_amino_acids>206</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYLPLSLSQFLFSSATMASTLSTITLRSPSPISPATASSTHASISFPTKTLELPIRTPKLYHRRATLVRPLAAVEAPEKVVQLGDEISNLTLADAQKLVEYLQDKLGVSAASFAPAAVVASPGGAAADAPAVVEEKTEFDVVIDEVPSNARIATIKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAEDAKKQLEEAGAKVSIA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="91804" e_stop="91049"/>
            <exon e_start="90782" e_stop="90757"/>
            <exon e_start="88920" e_stop="88905"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.997"/>
          <exon-intron don_prob="0.599" acc_prob="0.630" e_score="0.577"/>
          <exon-only e_score="0.625"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="91804" e_stop="91049" e_length="756"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="91048" i_stop="90783" i_length="266"/>
          </intron>
          <exon e_serial="2" e_score="0.577">
            <gDNA_exon_boundary e_start="90782" e_stop="90757" e_length="26"/>
          </exon>
          <intron i_serial="2" don_prob="0.599" acc_prob="0.630">
            <gDNA_intron_boundary i_start="90756" i_stop="88921" i_length="1836"/>
          </intron>
          <exon e_serial="3" e_score="0.625">
            <gDNA_exon_boundary e_start="88920" e_stop="88905" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91804" stop="91049"/>
              <exon start="90782" stop="90757"/>
              <exon start="88920" stop="88905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91783" stop="91150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91783" stop="91325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91780" stop="91395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91776" stop="91076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202748" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91776" stop="91152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91776" stop="91613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91775" stop="91049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91775" stop="91137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91772" stop="91134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91771" stop="91251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91769" stop="91165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91769" stop="91207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91768" stop="91165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91767" stop="91293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91767" stop="91315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91767" stop="91329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91763" stop="91424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91759" stop="91154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91757" stop="91342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91755" stop="91194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91754" stop="91338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91752" stop="91241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91734" stop="91185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91715" stop="91335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91663" stop="91180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91653" stop="91100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91545" stop="91347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91472" stop="91080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91418" stop="91053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91418" stop="91053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354526" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCAATCCCCTTATCCTAATTTTTGTATCTCCCTCTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTT : ATGAAAAATAAGCTGATAACTGAAAT : GAAAATTTTAAAAATA</gDNA_template>
            <first_frame> F  Q  S  P  Y  P  N  F  C  I  S  L  F  H  S  P  N  F  S  L  A  Q  L  Q  W  L  P  H  Y  P  Q  L  P  F  V  L  P  L  L  F  L  Q  Q  P  Q  A  P  R  T  L  Q  F  P  S  P  P  K  P  *  N  F  P  F  A  L  P  N  C  T  T  A  G  Q  L  S  S  A  L  S  P  P  S  K  H  R  R  R  *  S  S  S  E  M  K  S  P  T  *  P  S  L  M  P  R  N  S  S  S  T  F  R  I  S  L  E  F  Q  P  H  P  S  L  P  L  P  S  S  L  P  L  V  A  Q  P  Q  M  L  Q  L  W  L  R  R  R  R  N  L  M  *  S  S  M  K  C  R  V  M  L  E  L  R  P  L  R  L  L  G  L  *  Q  V  W  H  *  K  R  L  R  N  *  L  K  D  C  L  R  N  L  R  R  V  F  P  R  M  R  L  K  M  L  R  N  N  L  K  K  L  V  L  K  F  L  L  L  K  Q  I  C  G  K  C  S  F  L  V  V  F  S  Q  E  N  S  V  V  R  Y  T  C  T  Q  F  S  Q  I  K  F  F  Q  S  S  L  L  :  M  K  N  K  L  I  T  E  M :   K  I  L  K  I </first_frame>
            <second_frame>  F  N  P  L  I  L  I  F  V  S  P  S  F  T  L  P  I  S  L  *  L  S  Y  N  G  F  H  I  I  H  N  Y  P  S  F  S  L  S  Y  F  S  S  N  R  K  L  H  A  R  F  N  F  L  P  H  Q  N  P  R  T  S  H  S  H  S  Q  T  V  P  P  P  G  N  S  R  P  P  S  R  R  R  R  S  T  G  E  G  S  P  A  R  R  *  N  L  Q  L  N  P  R  *  C  P  E  T  R  R  V  P  S  G  *  A  W  S  F  S  R  I  L  R  S  R  C  R  R  R  F  P  W  W  R  S  R  R  C  S  S  C  G  *  G  E  D  G  I  *  C  S  H  R  *  S  A  E  *  C  *  N  C  D  H  *  G  C  *  G  F  N  K  F  G  I  E  R  G  *  G  I  D  *  R  I  A  *  E  I  *  G  G  C  F  Q  G  *  G  *  R  C  *  E  T  T  *  R  S  W  C  *  S  F  Y  C  L  N  K  F  V  V  N  V  R  S  *  L  C  F  R  K  R  I  Q  L  L  D  I  L  V  L  N  F  L  K  S  S  F  F  S  R  L  C  L :   *  K  I  S  *  *  L  K   : *  K  F  *  K   </second_frame>
            <third_frame>   S  I  P  L  S  *  F  L  Y  L  P  L  S  L  S  Q  F  L  F  S  S  A  T  M  A  S  T  L  S  T  I  T  L  R  S  P  S  P  I  S  P  A  T  A  S  S  T  H  A  S  I  S  F  P  T  K  T  L  E  L  P  I  R  T  P  K  L  Y  H  R  R  A  T  L  V  R  P  L  A  A  V  E  A  P  E  K  V  V  Q  L  G  D  E  I  S  N  L  T  L  A  D  A  Q  K  L  V  E  Y  L  Q  D  K  L  G  V  S  A  A  S  F  A  P  A  A  V  V  A  S  P  G  G  A  A  A  D  A  P  A  V  V  E  E  K  T  E  F  D  V  V  I  D  E  V  P  S  N  A  R  I  A  T  I  K  A  V  R  A  L  T  S  L  A  L  K  E  A  K  E  L  I  E  G  L  P  K  K  F  K  E  G  V  S  K  D  E  A  E  D  A  K  K  Q  L  E  E  A  G  A  K  V  S  I  A  *  T  N  L  W  *  M  F  V  L  S  C  V  F  A  R  E  F  S  C  *  I  Y  L  Y  S  I  F  S  N  Q  V  F  S  V  V  F  A   : Y  E  K  *  A  D  N  *  N  :  E  N  F  K  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0190P16.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91784" stop="91161"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>621</number_coding_nucleotides>
                  <number_encoded_amino_acids>207</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLYLPLSLSQFLFSSATMASTLSTITLRSPSPISPATASSTHASISFPTKTLELPIRTPKLYHRRATLVRPLAAVEAPEKVVQLGDEISNLTLADAQKLVEYLQDKLGVSAASFAPAAVVASPGGAAADAPAVVEEKTEFDVVIDEVPSNARIATIKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAEDAKKQLEEAGAKVSIA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="91783" e_stop="91062"/>
            <exon e_start="88060" e_stop="88032"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.998" e_score="0.991"/>
          <exon-only e_score="0.586"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="91783" e_stop="91062" e_length="722"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="91061" i_stop="88061" i_length="3001"/>
          </intron>
          <exon e_serial="2" e_score="0.586">
            <gDNA_exon_boundary e_start="88060" e_stop="88032" e_length="29"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91783" stop="91150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91783" stop="91325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91780" stop="91395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91776" stop="91076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202748" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91776" stop="91152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91776" stop="91613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91775" stop="91137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91772" stop="91134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91771" stop="91251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91769" stop="91165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91769" stop="91207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91768" stop="91165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91767" stop="91293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91767" stop="91315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91767" stop="91329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91763" stop="91424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91759" stop="91154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91757" stop="91342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91755" stop="91194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91754" stop="91338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91752" stop="91241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91734" stop="91185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91715" stop="91335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91663" stop="91180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91653" stop="91100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91545" stop="91347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91472" stop="91080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91427" stop="91062"/>
              <exon start="88060" stop="88032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91427" stop="91062"/>
              <exon start="88060" stop="88032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552199" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTGTATCTCCCTCTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCA : GTAAATAAGAGAGAGAAAATCTCTCAAAT</gDNA_template>
            <first_frame> F  C  I  S  L  F  H  S  P  N  F  S  L  A  Q  L  Q  W  L  P  H  Y  P  Q  L  P  F  V  L  P  L  L  F  L  Q  Q  P  Q  A  P  R  T  L  Q  F  P  S  P  P  K  P  *  N  F  P  F  A  L  P  N  C  T  T  A  G  Q  L  S  S  A  L  S  P  P  S  K  H  R  R  R  *  S  S  S  E  M  K  S  P  T  *  P  S  L  M  P  R  N  S  S  S  T  F  R  I  S  L  E  F  Q  P  H  P  S  L  P  L  P  S  S  L  P  L  V  A  Q  P  Q  M  L  Q  L  W  L  R  R  R  R  N  L  M  *  S  S  M  K  C  R  V  M  L  E  L  R  P  L  R  L  L  G  L  *  Q  V  W  H  *  K  R  L  R  N  *  L  K  D  C  L  R  N  L  R  R  V  F  P  R  M  R  L  K  M  L  R  N  N  L  K  K  L  V  L  K  F  L  L  L  K  Q  I  C  G  K  C  S  F  L  V  V  F  S  Q  E  N  S  V  V  R  Y  T  C  T  Q  F  S  Q  I  K  F  F  Q :   *  I  R  E  R  K  S  L  K  </first_frame>
            <second_frame>  F  V  S  P  S  F  T  L  P  I  S  L  *  L  S  Y  N  G  F  H  I  I  H  N  Y  P  S  F  S  L  S  Y  F  S  S  N  R  K  L  H  A  R  F  N  F  L  P  H  Q  N  P  R  T  S  H  S  H  S  Q  T  V  P  P  P  G  N  S  R  P  P  S  R  R  R  R  S  T  G  E  G  S  P  A  R  R  *  N  L  Q  L  N  P  R  *  C  P  E  T  R  R  V  P  S  G  *  A  W  S  F  S  R  I  L  R  S  R  C  R  R  R  F  P  W  W  R  S  R  R  C  S  S  C  G  *  G  E  D  G  I  *  C  S  H  R  *  S  A  E  *  C  *  N  C  D  H  *  G  C  *  G  F  N  K  F  G  I  E  R  G  *  G  I  D  *  R  I  A  *  E  I  *  G  G  C  F  Q  G  *  G  *  R  C  *  E  T  T  *  R  S  W  C  *  S  F  Y  C  L  N  K  F  V  V  N  V  R  S  *  L  C  F  R  K  R  I  Q  L  L  D  I  L  V  L  N  F  L  K  S  S  F  F   : S  K  *  E  R  E  N  L  S  N </second_frame>
            <third_frame>   L  Y  L  P  L  S  L  S  Q  F  L  F  S  S  A  T  M  A  S  T  L  S  T  I  T  L  R  S  P  S  P  I  S  P  A  T  A  S  S  T  H  A  S  I  S  F  P  T  K  T  L  E  L  P  I  R  T  P  K  L  Y  H  R  R  A  T  L  V  R  P  L  A  A  V  E  A  P  E  K  V  V  Q  L  G  D  E  I  S  N  L  T  L  A  D  A  Q  K  L  V  E  Y  L  Q  D  K  L  G  V  S  A  A  S  F  A  P  A  A  V  V  A  S  P  G  G  A  A  A  D  A  P  A  V  V  E  E  K  T  E  F  D  V  V  I  D  E  V  P  S  N  A  R  I  A  T  I  K  A  V  R  A  L  T  S  L  A  L  K  E  A  K  E  L  I  E  G  L  P  K  K  F  K  E  G  V  S  K  D  E  A  E  D  A  K  K  Q  L  E  E  A  G  A  K  V  S  I  A  *  T  N  L  W  *  M  F  V  L  S  C  V  F  A  R  E  F  S  C  *  I  Y  L  Y  S  I  F  S  N  Q  V  F  S  :  V  N  K  R  E  K  I  S  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0190P16.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91781" stop="91161"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>618</number_coding_nucleotides>
                  <number_encoded_amino_acids>206</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYLPLSLSQFLFSSATMASTLSTITLRSPSPISPATASSTHASISFPTKTLELPIRTPKLYHRRATLVRPLAAVEAPEKVVQLGDEISNLTLADAQKLVEYLQDKLGVSAASFAPAAVVASPGGAAADAPAVVEEKTEFDVVIDEVPSNARIATIKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAEDAKKQLEEAGAKVSIA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="91783" e_stop="91063"/>
            <exon e_start="89475" e_stop="89429"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.991"/>
          <exon-only e_score="0.617"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="91783" e_stop="91063" e_length="721"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="91062" i_stop="89476" i_length="1587"/>
          </intron>
          <exon e_serial="2" e_score="0.617">
            <gDNA_exon_boundary e_start="89475" e_stop="89429" e_length="47"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91783" stop="91150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91783" stop="91325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91780" stop="91395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91776" stop="91076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202748" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91776" stop="91152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91776" stop="91613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91775" stop="91137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91772" stop="91134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91771" stop="91251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91769" stop="91165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91769" stop="91207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91768" stop="91165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91767" stop="91293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91767" stop="91315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91767" stop="91329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91763" stop="91424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91759" stop="91154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91757" stop="91342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91755" stop="91194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91754" stop="91338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91752" stop="91241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91734" stop="91185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91715" stop="91335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91663" stop="91180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91653" stop="91100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91546" stop="91063"/>
              <exon start="89475" stop="89429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291921" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91545" stop="91347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91472" stop="91080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615725" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTGTATCTCCCTCTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTC : GAATTAATAAATCAACAGAAAAAGCTCAAAAATATCTTAAATTATTT</gDNA_template>
            <first_frame> F  C  I  S  L  F  H  S  P  N  F  S  L  A  Q  L  Q  W  L  P  H  Y  P  Q  L  P  F  V  L  P  L  L  F  L  Q  Q  P  Q  A  P  R  T  L  Q  F  P  S  P  P  K  P  *  N  F  P  F  A  L  P  N  C  T  T  A  G  Q  L  S  S  A  L  S  P  P  S  K  H  R  R  R  *  S  S  S  E  M  K  S  P  T  *  P  S  L  M  P  R  N  S  S  S  T  F  R  I  S  L  E  F  Q  P  H  P  S  L  P  L  P  S  S  L  P  L  V  A  Q  P  Q  M  L  Q  L  W  L  R  R  R  R  N  L  M  *  S  S  M  K  C  R  V  M  L  E  L  R  P  L  R  L  L  G  L  *  Q  V  W  H  *  K  R  L  R  N  *  L  K  D  C  L  R  N  L  R  R  V  F  P  R  M  R  L  K  M  L  R  N  N  L  K  K  L  V  L  K  F  L  L  L  K  Q  I  C  G  K  C  S  F  L  V  V  F  S  Q  E  N  S  V  V  R  Y  T  C  T  Q  F  S  Q  I  K  F  F   : R  I  N  K  S  T  E  K  A  Q  K  Y  L  K  L  F </first_frame>
            <second_frame>  F  V  S  P  S  F  T  L  P  I  S  L  *  L  S  Y  N  G  F  H  I  I  H  N  Y  P  S  F  S  L  S  Y  F  S  S  N  R  K  L  H  A  R  F  N  F  L  P  H  Q  N  P  R  T  S  H  S  H  S  Q  T  V  P  P  P  G  N  S  R  P  P  S  R  R  R  R  S  T  G  E  G  S  P  A  R  R  *  N  L  Q  L  N  P  R  *  C  P  E  T  R  R  V  P  S  G  *  A  W  S  F  S  R  I  L  R  S  R  C  R  R  R  F  P  W  W  R  S  R  R  C  S  S  C  G  *  G  E  D  G  I  *  C  S  H  R  *  S  A  E  *  C  *  N  C  D  H  *  G  C  *  G  F  N  K  F  G  I  E  R  G  *  G  I  D  *  R  I  A  *  E  I  *  G  G  C  F  Q  G  *  G  *  R  C  *  E  T  T  *  R  S  W  C  *  S  F  Y  C  L  N  K  F  V  V  N  V  R  S  *  L  C  F  R  K  R  I  Q  L  L  D  I  L  V  L  N  F  L  K  S  S  F  F  :  E  L  I  N  Q  Q  K  K  L  K  N  I  L  N  Y   </second_frame>
            <third_frame>   L  Y  L  P  L  S  L  S  Q  F  L  F  S  S  A  T  M  A  S  T  L  S  T  I  T  L  R  S  P  S  P  I  S  P  A  T  A  S  S  T  H  A  S  I  S  F  P  T  K  T  L  E  L  P  I  R  T  P  K  L  Y  H  R  R  A  T  L  V  R  P  L  A  A  V  E  A  P  E  K  V  V  Q  L  G  D  E  I  S  N  L  T  L  A  D  A  Q  K  L  V  E  Y  L  Q  D  K  L  G  V  S  A  A  S  F  A  P  A  A  V  V  A  S  P  G  G  A  A  A  D  A  P  A  V  V  E  E  K  T  E  F  D  V  V  I  D  E  V  P  S  N  A  R  I  A  T  I  K  A  V  R  A  L  T  S  L  A  L  K  E  A  K  E  L  I  E  G  L  P  K  K  F  K  E  G  V  S  K  D  E  A  E  D  A  K  K  Q  L  E  E  A  G  A  K  V  S  I  A  *  T  N  L  W  *  M  F  V  L  S  C  V  F  A  R  E  F  S  C  *  I  Y  L  Y  S  I  F  S  N  Q  V  F  S :   N  *  *  I  N  R  K  S  S  K  I  S  *  I  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0190P16.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91781" stop="91161"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>618</number_coding_nucleotides>
                  <number_encoded_amino_acids>206</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYLPLSLSQFLFSSATMASTLSTITLRSPSPISPATASSTHASISFPTKTLELPIRTPKLYHRRATLVRPLAAVEAPEKVVQLGDEISNLTLADAQKLVEYLQDKLGVSAASFAPAAVVASPGGAAADAPAVVEEKTEFDVVIDEVPSNARIATIKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAEDAKKQLEEAGAKVSIA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="91783" e_stop="91062"/>
            <exon e_start="90979" e_stop="90959"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.995" e_score="0.999"/>
          <exon-only e_score="0.333"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="91783" e_stop="91062" e_length="722"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="91061" i_stop="90980" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="0.333">
            <gDNA_exon_boundary e_start="90979" e_stop="90959" e_length="21"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91783" stop="91150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91783" stop="91325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91780" stop="91395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91776" stop="91076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202748" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91776" stop="91152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91776" stop="91613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91775" stop="91137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91772" stop="91134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91771" stop="91251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91769" stop="91165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91769" stop="91207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91768" stop="91165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91767" stop="91293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91767" stop="91315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91767" stop="91329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91763" stop="91424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91759" stop="91154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91757" stop="91342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91755" stop="91194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91754" stop="91338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91752" stop="91241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91749" stop="91062"/>
              <exon start="90979" stop="90959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91734" stop="91185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91715" stop="91335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91663" stop="91180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91653" stop="91100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91545" stop="91347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91472" stop="91080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615725" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTGTATCTCCCTCTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCA : GCAGGCGAGCAGACATAATCT</gDNA_template>
            <first_frame> F  C  I  S  L  F  H  S  P  N  F  S  L  A  Q  L  Q  W  L  P  H  Y  P  Q  L  P  F  V  L  P  L  L  F  L  Q  Q  P  Q  A  P  R  T  L  Q  F  P  S  P  P  K  P  *  N  F  P  F  A  L  P  N  C  T  T  A  G  Q  L  S  S  A  L  S  P  P  S  K  H  R  R  R  *  S  S  S  E  M  K  S  P  T  *  P  S  L  M  P  R  N  S  S  S  T  F  R  I  S  L  E  F  Q  P  H  P  S  L  P  L  P  S  S  L  P  L  V  A  Q  P  Q  M  L  Q  L  W  L  R  R  R  R  N  L  M  *  S  S  M  K  C  R  V  M  L  E  L  R  P  L  R  L  L  G  L  *  Q  V  W  H  *  K  R  L  R  N  *  L  K  D  C  L  R  N  L  R  R  V  F  P  R  M  R  L  K  M  L  R  N  N  L  K  K  L  V  L  K  F  L  L  L  K  Q  I  C  G  K  C  S  F  L  V  V  F  S  Q  E  N  S  V  V  R  Y  T  C  T  Q  F  S  Q  I  K  F  F  Q :   Q  A  S  R  H  N   </first_frame>
            <second_frame>  F  V  S  P  S  F  T  L  P  I  S  L  *  L  S  Y  N  G  F  H  I  I  H  N  Y  P  S  F  S  L  S  Y  F  S  S  N  R  K  L  H  A  R  F  N  F  L  P  H  Q  N  P  R  T  S  H  S  H  S  Q  T  V  P  P  P  G  N  S  R  P  P  S  R  R  R  R  S  T  G  E  G  S  P  A  R  R  *  N  L  Q  L  N  P  R  *  C  P  E  T  R  R  V  P  S  G  *  A  W  S  F  S  R  I  L  R  S  R  C  R  R  R  F  P  W  W  R  S  R  R  C  S  S  C  G  *  G  E  D  G  I  *  C  S  H  R  *  S  A  E  *  C  *  N  C  D  H  *  G  C  *  G  F  N  K  F  G  I  E  R  G  *  G  I  D  *  R  I  A  *  E  I  *  G  G  C  F  Q  G  *  G  *  R  C  *  E  T  T  *  R  S  W  C  *  S  F  Y  C  L  N  K  F  V  V  N  V  R  S  *  L  C  F  R  K  R  I  Q  L  L  D  I  L  V  L  N  F  L  K  S  S  F  F   : S  R  R  A  D  I  I  </second_frame>
            <third_frame>   L  Y  L  P  L  S  L  S  Q  F  L  F  S  S  A  T  M  A  S  T  L  S  T  I  T  L  R  S  P  S  P  I  S  P  A  T  A  S  S  T  H  A  S  I  S  F  P  T  K  T  L  E  L  P  I  R  T  P  K  L  Y  H  R  R  A  T  L  V  R  P  L  A  A  V  E  A  P  E  K  V  V  Q  L  G  D  E  I  S  N  L  T  L  A  D  A  Q  K  L  V  E  Y  L  Q  D  K  L  G  V  S  A  A  S  F  A  P  A  A  V  V  A  S  P  G  G  A  A  A  D  A  P  A  V  V  E  E  K  T  E  F  D  V  V  I  D  E  V  P  S  N  A  R  I  A  T  I  K  A  V  R  A  L  T  S  L  A  L  K  E  A  K  E  L  I  E  G  L  P  K  K  F  K  E  G  V  S  K  D  E  A  E  D  A  K  K  Q  L  E  E  A  G  A  K  V  S  I  A  *  T  N  L  W  *  M  F  V  L  S  C  V  F  A  R  E  F  S  C  *  I  Y  L  Y  S  I  F  S  N  Q  V  F  S  :  A  G  E  Q  T  *  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0190P16.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91781" stop="91161"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>618</number_coding_nucleotides>
                  <number_encoded_amino_acids>206</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYLPLSLSQFLFSSATMASTLSTITLRSPSPISPATASSTHASISFPTKTLELPIRTPKLYHRRATLVRPLAAVEAPEKVVQLGDEISNLTLADAQKLVEYLQDKLGVSAASFAPAAVVASPGGAAADAPAVVEEKTEFDVVIDEVPSNARIATIKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAEDAKKQLEEAGAKVSIA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="87672" e_stop="86905"/>
            <exon e_start="85720" e_stop="85713"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.977" e_score="0.991"/>
          <exon-only e_score="0.750"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="87672" e_stop="86905" e_length="768"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.977">
            <gDNA_intron_boundary i_start="86904" i_stop="85721" i_length="1184"/>
          </intron>
          <exon e_serial="2" e_score="0.750">
            <gDNA_exon_boundary e_start="85720" e_stop="85713" e_length="8"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87672" stop="86906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87671" stop="86919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87671" stop="86923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87665" stop="86978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87663" stop="86911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87662" stop="87131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266872" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87662" stop="87166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87662" stop="87250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87660" stop="86990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87659" stop="87236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87657" stop="87163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87650" stop="86911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87649" stop="86991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87638" stop="86983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87638" stop="87250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87607" stop="86916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87600" stop="86908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87578" stop="86933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87573" stop="86908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87534" stop="86926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87534" stop="86927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87518" stop="86989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87490" stop="86931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87451" stop="86905"/>
              <exon start="85720" stop="85713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87347" stop="86905"/>
              <exon start="85720" stop="85714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87347" stop="86908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293512" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTCCCTCTTTCATTTCCTCTCCTCAATTTCTCTTTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGAACTGGGAAAAATTACTGAGTTTTTTTTTGTTTTTGTAAGAGCATTCAGCTATTAGATAGTTGTACCCAATTTTCTAAAATCAATATTTATGATTCTGCATAATTTTGTAATT : GAGAAAAA</gDNA_template>
            <first_frame> A  P  S  F  I  S  S  P  Q  F  L  F  C  S  A  T  M  A  S  T  L  S  T  I  A  L  C  S  P  S  H  I  S  P  S  T  H  A  S  I  S  F  P  T  K  T  L  Q  L  P  I  R  T  S  K  L  H  H  R  R  A  T  F  V  R  P  L  A  A  V  E  A  P  E  K  V  V  Q  L  G  D  E  I  S  T  L  T  L  A  D  A  Q  K  L  V  E  Y  L  Q  D  K  L  G  V  S  A  A  S  F  A  P  A  A  V  V  A  A  P  G  G  A  A  A  D  A  P  A  V  V  E  E  K  T  E  F  D  V  V  I  D  E  V  P  S  N  A  R  I  A  T  I  K  A  V  R  A  L  T  S  L  A  L  K  E  A  K  E  L  I  E  G  L  P  K  K  F  K  E  G  V  S  K  D  E  A  E  D  A  K  K  Q  L  E  E  A  G  A  K  V  S  I  A  *  I  N  L  W  *  M  F  I  L  I  P  F  F  F  F  E  L  G  K  I  T  E  F  F  F  V  F  V  R  A  F  S  Y  *  I  V  V  P  N  F  L  K  S  I  F  M  I  L  H  N  F  V  I  :  E  K   </first_frame>
            <second_frame>  L  P  L  S  F  P  L  L  N  F  S  F  A  L  L  Q  W  L  P  H  Y  P  L  L  P  F  V  H  L  L  T  F  P  P  P  H  T  L  Q  F  L  S  P  P  K  P  Y  N  S  P  F  A  L  P  N  S  T  T  A  E  P  L  L  S  A  L  S  P  P  S  K  H  R  R  R  *  S  S  S  G  M  K  S  P  L  *  P  *  L  T  P  R  N  W  L  S  T  F  R  I  S  L  V  F  Q  P  H  P  S  L  L  L  P  L  S  L  P  L  V  A  Q  P  Q  M  L  Q  L  W  L  K  R  R  R  N  L  T  *  S  S  M  K  C  R  V  M  L  E  L  L  P  L  R  L  L  G  L  *  Q  V  W  H  *  K  R  L  R  N  *  L  K  D  C  L  R  N  L  R  R  V  F  P  R  M  R  L  K  M  L  R  N  S  S  K  K  L  V  L  K  S  L  L  L  K  S  I  C  G  K  C  S  F  L  F  L  F  F  F  L  N  W  E  K  L  L  S  F  F  L  F  L  *  E  H  S  A  I  R  *  L  Y  P  I  F  *  N  Q  Y  L  *  F  C  I  I  L  *  L :   R  K  </second_frame>
            <third_frame>   S  L  F  H  F  L  S  S  I  S  L  L  L  C  Y  N  G  F  H  I  I  H  Y  C  P  L  F  T  F  S  H  F  P  L  H  T  R  F  N  F  F  P  H  Q  N  P  T  T  P  H  S  H  F  Q  T  P  P  P  P  S  H  F  C  P  P  S  R  R  R  R  S  T  G  E  G  S  P  A  R  G  *  N  L  H  F  N  P  S  *  R  P  E  T  G  *  V  P  S  G  *  A  W  C  F  S  R  I  L  R  S  C  C  R  C  R  C  P  W  W  R  S  R  R  C  S  S  C  G  *  R  E  D  G  I  *  R  S  H  R  *  S  A  E  *  C  *  N  C  Y  H  *  G  C  *  G  F  N  K  F  G  I  E  R  G  *  G  I  D  *  R  I  A  *  E  I  *  G  G  C  F  Q  G  *  G  *  R  C  *  E  T  A  R  R  S  W  C  *  S  L  Y  C  L  N  Q  F  V  V  N  V  H  S  Y  S  F  F  F  F  *  T  G  K  N  Y  *  V  F  F  C  F  C  K  S  I  Q  L  L  D  S  C  T  Q  F  S  K  I  N  I  Y  D  S  A  *  F  C  N   : *  E  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0190P16.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87672" stop="87064"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>606</number_coding_nucleotides>
                  <number_encoded_amino_acids>202</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>APSFISSPQFLFCSATMASTLSTIALCSPSHISPSTHASISFPTKTLQLPIRTSKLHHRRATFVRPLAAVEAPEKVVQLGDEISTLTLADAQKLVEYLQDKLGVSAASFAPAAVVAAPGGAAADAPAVVEEKTEFDVVIDEVPSNARIATIKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAEDAKKQLEEAGAKVSIA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="87672" e_stop="86899"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="87672" e_stop="86899" e_length="774"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87672" stop="86906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87671" stop="86919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87671" stop="86923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87665" stop="86978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87663" stop="86911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87662" stop="87131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266872" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87662" stop="87166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87662" stop="87250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87660" stop="86899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87660" stop="86990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87659" stop="87236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87657" stop="87163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87650" stop="86911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87649" stop="86991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87638" stop="86983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87638" stop="87250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87607" stop="86916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87600" stop="86908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87578" stop="86933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87573" stop="86908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87534" stop="86926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87534" stop="86927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87518" stop="86989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87490" stop="86931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87347" stop="86908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293512" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="7" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTCCCTCTTTCATTTCCTCTCCTCAATTTCTCTTTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGAACTGGGAAAAATTACTGAGTTTTTTTTTGTTTTTGTAAGAGCATTCAGCTATTAGATAGTTGTACCCAATTTTCTAAAATCAATATTTATGATTCTGCATAATTTTGTAATTGTTATT</gDNA_template>
            <first_frame> A  P  S  F  I  S  S  P  Q  F  L  F  C  S  A  T  M  A  S  T  L  S  T  I  A  L  C  S  P  S  H  I  S  P  S  T  H  A  S  I  S  F  P  T  K  T  L  Q  L  P  I  R  T  S  K  L  H  H  R  R  A  T  F  V  R  P  L  A  A  V  E  A  P  E  K  V  V  Q  L  G  D  E  I  S  T  L  T  L  A  D  A  Q  K  L  V  E  Y  L  Q  D  K  L  G  V  S  A  A  S  F  A  P  A  A  V  V  A  A  P  G  G  A  A  A  D  A  P  A  V  V  E  E  K  T  E  F  D  V  V  I  D  E  V  P  S  N  A  R  I  A  T  I  K  A  V  R  A  L  T  S  L  A  L  K  E  A  K  E  L  I  E  G  L  P  K  K  F  K  E  G  V  S  K  D  E  A  E  D  A  K  K  Q  L  E  E  A  G  A  K  V  S  I  A  *  I  N  L  W  *  M  F  I  L  I  P  F  F  F  F  E  L  G  K  I  T  E  F  F  F  V  F  V  R  A  F  S  Y  *  I  V  V  P  N  F  L  K  S  I  F  M  I  L  H  N  F  V  I  V  I </first_frame>
            <second_frame>  L  P  L  S  F  P  L  L  N  F  S  F  A  L  L  Q  W  L  P  H  Y  P  L  L  P  F  V  H  L  L  T  F  P  P  P  H  T  L  Q  F  L  S  P  P  K  P  Y  N  S  P  F  A  L  P  N  S  T  T  A  E  P  L  L  S  A  L  S  P  P  S  K  H  R  R  R  *  S  S  S  G  M  K  S  P  L  *  P  *  L  T  P  R  N  W  L  S  T  F  R  I  S  L  V  F  Q  P  H  P  S  L  L  L  P  L  S  L  P  L  V  A  Q  P  Q  M  L  Q  L  W  L  K  R  R  R  N  L  T  *  S  S  M  K  C  R  V  M  L  E  L  L  P  L  R  L  L  G  L  *  Q  V  W  H  *  K  R  L  R  N  *  L  K  D  C  L  R  N  L  R  R  V  F  P  R  M  R  L  K  M  L  R  N  S  S  K  K  L  V  L  K  S  L  L  L  K  S  I  C  G  K  C  S  F  L  F  L  F  F  F  L  N  W  E  K  L  L  S  F  F  L  F  L  *  E  H  S  A  I  R  *  L  Y  P  I  F  *  N  Q  Y  L  *  F  C  I  I  L  *  L  L   </second_frame>
            <third_frame>   S  L  F  H  F  L  S  S  I  S  L  L  L  C  Y  N  G  F  H  I  I  H  Y  C  P  L  F  T  F  S  H  F  P  L  H  T  R  F  N  F  F  P  H  Q  N  P  T  T  P  H  S  H  F  Q  T  P  P  P  P  S  H  F  C  P  P  S  R  R  R  R  S  T  G  E  G  S  P  A  R  G  *  N  L  H  F  N  P  S  *  R  P  E  T  G  *  V  P  S  G  *  A  W  C  F  S  R  I  L  R  S  C  C  R  C  R  C  P  W  W  R  S  R  R  C  S  S  C  G  *  R  E  D  G  I  *  R  S  H  R  *  S  A  E  *  C  *  N  C  Y  H  *  G  C  *  G  F  N  K  F  G  I  E  R  G  *  G  I  D  *  R  I  A  *  E  I  *  G  G  C  F  Q  G  *  G  *  R  C  *  E  T  A  R  R  S  W  C  *  S  L  Y  C  L  N  Q  F  V  V  N  V  H  S  Y  S  F  F  F  F  *  T  G  K  N  Y  *  V  F  F  C  F  C  K  S  I  Q  L  L  D  S  C  T  Q  F  S  K  I  N  I  Y  D  S  A  *  F  C  N  C  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0190P16.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87672" stop="87064"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>606</number_coding_nucleotides>
                  <number_encoded_amino_acids>202</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>APSFISSPQFLFCSATMASTLSTIALCSPSHISPSTHASISFPTKTLQLPIRTSKLHHRRATFVRPLAAVEAPEKVVQLGDEISTLTLADAQKLVEYLQDKLGVSAASFAPAAVVAAPGGAAADAPAVVEEKTEFDVVIDEVPSNARIATIKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAEDAKKQLEEAGAKVSIA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="8">
          <exon_coordinates>
            <exon e_start="87665" e_stop="86935"/>
            <exon e_start="86849" e_stop="86824"/>
            <exon e_start="85720" e_stop="85706"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.572" e_score="0.999"/>
          <exon-intron don_prob="0.180" acc_prob="0.977" e_score="0.577"/>
          <exon-only e_score="0.533"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="87665" e_stop="86935" e_length="731"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.572">
            <gDNA_intron_boundary i_start="86934" i_stop="86850" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="0.577">
            <gDNA_exon_boundary e_start="86849" e_stop="86824" e_length="26"/>
          </exon>
          <intron i_serial="2" don_prob="0.180" acc_prob="0.977">
            <gDNA_intron_boundary i_start="86823" i_stop="85721" i_length="1103"/>
          </intron>
          <exon e_serial="3" e_score="0.533">
            <gDNA_exon_boundary e_start="85720" e_stop="85706" e_length="15"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87665" stop="86978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87662" stop="87131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266872" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87662" stop="87166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87662" stop="87250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87660" stop="86990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87659" stop="87236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87657" stop="87163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87649" stop="86991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87638" stop="86983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87638" stop="87250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87518" stop="86989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87256" stop="86935"/>
              <exon start="86849" stop="86824"/>
              <exon start="85720" stop="85706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616179" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="8" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTCATTTCCTCTCCTCAATTTCTCTTTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGAACTGGGAAAAATTACTGAGTTTTTTTTTGTTTTTGTAAGAGCATTCAGCTATTAGATAGTTGTACCCAATTTTCTAAAATCA : TCAATGTGCGCGCAAGTTTGCTCAAA : GAGAAAAAGTAGTCA</gDNA_template>
            <first_frame> L  S  F  P  L  L  N  F  S  F  A  L  L  Q  W  L  P  H  Y  P  L  L  P  F  V  H  L  L  T  F  P  P  P  H  T  L  Q  F  L  S  P  P  K  P  Y  N  S  P  F  A  L  P  N  S  T  T  A  E  P  L  L  S  A  L  S  P  P  S  K  H  R  R  R  *  S  S  S  G  M  K  S  P  L  *  P  *  L  T  P  R  N  W  L  S  T  F  R  I  S  L  V  F  Q  P  H  P  S  L  L  L  P  L  S  L  P  L  V  A  Q  P  Q  M  L  Q  L  W  L  K  R  R  R  N  L  T  *  S  S  M  K  C  R  V  M  L  E  L  L  P  L  R  L  L  G  L  *  Q  V  W  H  *  K  R  L  R  N  *  L  K  D  C  L  R  N  L  R  R  V  F  P  R  M  R  L  K  M  L  R  N  S  S  K  K  L  V  L  K  S  L  L  L  K  S  I  C  G  K  C  S  F  L  F  L  F  F  F  L  N  W  E  K  L  L  S  F  F  L  F  L  *  E  H  S  A  I  R  *  L  Y  P  I  F  *  N  H :   Q  C  A  R  K  F  A  Q   : R  E  K  V  V  </first_frame>
            <second_frame>  F  H  F  L  S  S  I  S  L  L  L  C  Y  N  G  F  H  I  I  H  Y  C  P  L  F  T  F  S  H  F  P  L  H  T  R  F  N  F  F  P  H  Q  N  P  T  T  P  H  S  H  F  Q  T  P  P  P  P  S  H  F  C  P  P  S  R  R  R  R  S  T  G  E  G  S  P  A  R  G  *  N  L  H  F  N  P  S  *  R  P  E  T  G  *  V  P  S  G  *  A  W  C  F  S  R  I  L  R  S  C  C  R  C  R  C  P  W  W  R  S  R  R  C  S  S  C  G  *  R  E  D  G  I  *  R  S  H  R  *  S  A  E  *  C  *  N  C  Y  H  *  G  C  *  G  F  N  K  F  G  I  E  R  G  *  G  I  D  *  R  I  A  *  E  I  *  G  G  C  F  Q  G  *  G  *  R  C  *  E  T  A  R  R  S  W  C  *  S  L  Y  C  L  N  Q  F  V  V  N  V  H  S  Y  S  F  F  F  F  *  T  G  K  N  Y  *  V  F  F  C  F  C  K  S  I  Q  L  L  D  S  C  T  Q  F  S  K  I   : I  N  V  R  A  S  L  L  K  :  E  K  K  *  S </second_frame>
            <third_frame>   F  I  S  S  P  Q  F  L  F  C  S  A  T  M  A  S  T  L  S  T  I  A  L  C  S  P  S  H  I  S  P  S  T  H  A  S  I  S  F  P  T  K  T  L  Q  L  P  I  R  T  S  K  L  H  H  R  R  A  T  F  V  R  P  L  A  A  V  E  A  P  E  K  V  V  Q  L  G  D  E  I  S  T  L  T  L  A  D  A  Q  K  L  V  E  Y  L  Q  D  K  L  G  V  S  A  A  S  F  A  P  A  A  V  V  A  A  P  G  G  A  A  A  D  A  P  A  V  V  E  E  K  T  E  F  D  V  V  I  D  E  V  P  S  N  A  R  I  A  T  I  K  A  V  R  A  L  T  S  L  A  L  K  E  A  K  E  L  I  E  G  L  P  K  K  F  K  E  G  V  S  K  D  E  A  E  D  A  K  K  Q  L  E  E  A  G  A  K  V  S  I  A  *  I  N  L  W  *  M  F  I  L  I  P  F  F  F  F  E  L  G  K  I  T  E  F  F  F  V  F  V  R  A  F  S  Y  *  I  V  V  P  N  F  L  K  S  :  S  M  C  A  Q  V  C  S  K :   R  K  S  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0190P16.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="8" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87663" stop="87064"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FISSPQFLFCSATMASTLSTIALCSPSHISPSTHASISFPTKTLQLPIRTSKLHHRRATFVRPLAAVEAPEKVVQLGDEISTLTLADAQKLVEYLQDKLGVSAASFAPAAVVAAPGGAAADAPAVVEEKTEFDVVIDEVPSNARIATIKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAEDAKKQLEEAGAKVSIA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="9">
          <exon_coordinates>
            <exon e_start="91759" e_stop="91663"/>
            <exon e_start="87565" e_stop="86905"/>
            <exon e_start="85720" e_stop="85713"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.977" e_score="0.911"/>
          <exon-only e_score="0.750"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="91759" e_stop="91663" e_length="97"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.000">
            <gDNA_intron_boundary i_start="91662" i_stop="87566" i_length="4097"/>
          </intron>
          <exon e_serial="2" e_score="0.911">
            <gDNA_exon_boundary e_start="87565" e_stop="86905" e_length="661"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.977">
            <gDNA_intron_boundary i_start="86904" i_stop="85721" i_length="1184"/>
          </intron>
          <exon e_serial="3" e_score="0.750">
            <gDNA_exon_boundary e_start="85720" e_stop="85713" e_length="8"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91759" stop="91663"/>
              <exon start="87565" stop="86945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91731" stop="91663"/>
              <exon start="87565" stop="86935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87534" stop="86926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87534" stop="86927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87518" stop="86989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87490" stop="86931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87451" stop="86905"/>
              <exon start="85720" stop="85713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87347" stop="86905"/>
              <exon start="85720" stop="85714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87347" stop="86908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293512" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="9" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCAC : ACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGAACTGGGAAAAATTACTGAGTTTTTTTTTGTTTTTGTAAGAGCATTCAGCTATTAGATAGTTGTACCCAATTTTCTAAAATCAATATTTATGATTCTGCATAATTTTGTAATT : GAGAAAAA</gDNA_template>
            <first_frame> P  N  F  S  L  A  Q  L  Q  W  L  P  H  Y  P  Q  L  P  F  V  L  P  L  L  F  L  Q  Q  P  Q  A  P   : H  T  L  Q  F  L  S  P  P  K  P  Y  N  S  P  F  A  L  P  N  S  T  T  A  E  P  L  L  S  A  L  S  P  P  S  K  H  R  R  R  *  S  S  S  G  M  K  S  P  L  *  P  *  L  T  P  R  N  W  L  S  T  F  R  I  S  L  V  F  Q  P  H  P  S  L  L  L  P  L  S  L  P  L  V  A  Q  P  Q  M  L  Q  L  W  L  K  R  R  R  N  L  T  *  S  S  M  K  C  R  V  M  L  E  L  L  P  L  R  L  L  G  L  *  Q  V  W  H  *  K  R  L  R  N  *  L  K  D  C  L  R  N  L  R  R  V  F  P  R  M  R  L  K  M  L  R  N  S  S  K  K  L  V  L  K  S  L  L  L  K  S  I  C  G  K  C  S  F  L  F  L  F  F  F  L  N  W  E  K  L  L  S  F  F  L  F  L  *  E  H  S  A  I  R  *  L  Y  P  I  F  *  N  Q  Y  L  *  F  C  I  I  L  *  L :   R  K  </first_frame>
            <second_frame>  P  I  S  L  *  L  S  Y  N  G  F  H  I  I  H  N  Y  P  S  F  S  L  S  Y  F  S  S  N  R  K  L  H  :  T  R  F  N  F  F  P  H  Q  N  P  T  T  P  H  S  H  F  Q  T  P  P  P  P  S  H  F  C  P  P  S  R  R  R  R  S  T  G  E  G  S  P  A  R  G  *  N  L  H  F  N  P  S  *  R  P  E  T  G  *  V  P  S  G  *  A  W  C  F  S  R  I  L  R  S  C  C  R  C  R  C  P  W  W  R  S  R  R  C  S  S  C  G  *  R  E  D  G  I  *  R  S  H  R  *  S  A  E  *  C  *  N  C  Y  H  *  G  C  *  G  F  N  K  F  G  I  E  R  G  *  G  I  D  *  R  I  A  *  E  I  *  G  G  C  F  Q  G  *  G  *  R  C  *  E  T  A  R  R  S  W  C  *  S  L  Y  C  L  N  Q  F  V  V  N  V  H  S  Y  S  F  F  F  F  *  T  G  K  N  Y  *  V  F  F  C  F  C  K  S  I  Q  L  L  D  S  C  T  Q  F  S  K  I  N  I  Y  D  S  A  *  F  C  N   : *  E  K </second_frame>
            <third_frame>   Q  F  L  F  S  S  A  T  M  A  S  T  L  S  T  I  T  L  R  S  P  S  P  I  S  P  A  T  A  S  S  T :   H  A  S  I  S  F  P  T  K  T  L  Q  L  P  I  R  T  S  K  L  H  H  R  R  A  T  F  V  R  P  L  A  A  V  E  A  P  E  K  V  V  Q  L  G  D  E  I  S  T  L  T  L  A  D  A  Q  K  L  V  E  Y  L  Q  D  K  L  G  V  S  A  A  S  F  A  P  A  A  V  V  A  A  P  G  G  A  A  A  D  A  P  A  V  V  E  E  K  T  E  F  D  V  V  I  D  E  V  P  S  N  A  R  I  A  T  I  K  A  V  R  A  L  T  S  L  A  L  K  E  A  K  E  L  I  E  G  L  P  K  K  F  K  E  G  V  S  K  D  E  A  E  D  A  K  K  Q  L  E  E  A  G  A  K  V  S  I  A  *  I  N  L  W  *  M  F  I  L  I  P  F  F  F  F  E  L  G  K  I  T  E  F  F  F  V  F  V  R  A  F  S  Y  *  I  V  V  P  N  F  L  K  S  I  F  M  I  L  H  N  F  V  I  :  E  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0190P16.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="9" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91757" stop="91663"/>
                    <exon start="87565" stop="87064"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>594</number_coding_nucleotides>
                  <number_encoded_amino_acids>198</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QFLFSSATMASTLSTITLRSPSPISPATASSTHASISFPTKTLQLPIRTSKLHHRRATFVRPLAAVEAPEKVVQLGDEISTLTLADAQKLVEYLQDKLGVSAASFAPAAVVAAPGGAAADAPAVVEEKTEFDVVIDEVPSNARIATIKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAEDAKKQLEEAGAKVSIA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="89786" PGL_stop="91776"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91024" e_stop="91776"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.951"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.951">
            <gDNA_exon_boundary e_start="91024" e_stop="91776" e_length="753"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91024" stop="91502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91027" stop="91544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91029" stop="91450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91029" stop="91398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91060" stop="91729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91460" stop="91776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281577" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91477" stop="91776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281578" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAACTGGAACAATCACAAATCATAAGCAAAGACGACTGAAAAAACTTGATTTGAGAAAATTGAGTACAAGTATATCTAACAACTGAATTCTCTTGCGAAAACACAACTAAGAACGAACATTTACCACAAATTTGTTTAAGCAATAGAAACTTTAGCACCAGCTTCTTCAAGTTGTTTCTTAGCATCTTCAGCCTCATCCTTGGAAACACCCTCCTTAAATTTCTTAGGCAATCCTTCAATCAATTCCTTAGCCTCTTTCAATGCCAAACTTGTTAAAGCCCTAACAGCCTTAATGGTCGCAATTCTAGCATTACTCGGCACTTCATCGATGACTACATCAAATTCCGTCTTCTCCTCAACCACAGCTGGAGCATCTGCGGCTGCGCCACCAGGGGAAGCGACGACGGCAGCGGGAGCGAAGGATGCGGCTGAAACTCCAAGCTTATCCTGAAGGTACTCGACGAGTTTCTGGGCATCAGCGAGGGTTAAGTTGGAGATTTCATCTCCGAGCTGGACTACCTTCTCCGGTGCTTCGACGGCGGCGAGAGGGCGGACGAGAGTTGCCCGGCGGTGGTACAGTTTGGGAGTGCGAATGGGAAGTTCTAGGGTTTTGGTGGGGAAGGAAATTGAAGCGTGCGTGGAGCTTGCGGTTGCTGGAGAAATAGGAGAGGGAGAACGAAGGGTAATTGTGGATAATGTGGAAGCCATTGTAGCTGAGCTAAAGAGAAATTGGGAGAGTGAAAGAGGGAGA</gDNA_template>
            <first_frame> *  N  W  N  N  H  K  S  *  A  K  T  T  E  K  T  *  F  E  K  I  E  Y  K  Y  I  *  Q  L  N  S  L  A  K  T  Q  L  R  T  N  I  Y  H  K  F  V  *  A  I  E  T  L  A  P  A  S  S  S  C  F  L  A  S  S  A  S  S  L  E  T  P  S  L  N  F  L  G  N  P  S  I  N  S  L  A  S  F  N  A  K  L  V  K  A  L  T  A  L  M  V  A  I  L  A  L  L  G  T  S  S  M  T  T  S  N  S  V  F  S  S  T  T  A  G  A  S  A  A  A  P  P  G  E  A  T  T  A  A  G  A  K  D  A  A  E  T  P  S  L  S  *  R  Y  S  T  S  F  W  A  S  A  R  V  K  L  E  I  S  S  P  S  W  T  T  F  S  G  A  S  T  A  A  R  G  R  T  R  V  A  R  R  W  Y  S  L  G  V  R  M  G  S  S  R  V  L  V  G  K  E  I  E  A  C  V  E  L  A  V  A  G  E  I  G  E  G  E  R  R  V  I  V  D  N  V  E  A  I  V  A  E  L  K  R  N  W  E  S  E  R  G  R </first_frame>
            <second_frame>  K  T  G  T  I  T  N  H  K  Q  R  R  L  K  K  L  D  L  R  K  L  S  T  S  I  S  N  N  *  I  L  L  R  K  H  N  *  E  R  T  F  T  T  N  L  F  K  Q  *  K  L  *  H  Q  L  L  Q  V  V  S  *  H  L  Q  P  H  P  W  K  H  P  P  *  I  S  *  A  I  L  Q  S  I  P  *  P  L  S  M  P  N  L  L  K  P  *  Q  P  *  W  S  Q  F  *  H  Y  S  A  L  H  R  *  L  H  Q  I  P  S  S  P  Q  P  Q  L  E  H  L  R  L  R  H  Q  G  K  R  R  R  Q  R  E  R  R  M  R  L  K  L  Q  A  Y  P  E  G  T  R  R  V  S  G  H  Q  R  G  L  S  W  R  F  H  L  R  A  G  L  P  S  P  V  L  R  R  R  R  E  G  G  R  E  L  P  G  G  G  T  V  W  E  C  E  W  E  V  L  G  F  W  W  G  R  K  L  K  R  A  W  S  L  R  L  L  E  K  *  E  R  E  N  E  G  *  L  W  I  M  W  K  P  L  *  L  S  *  R  E  I  G  R  V  K  E  G   </second_frame>
            <third_frame>   K  L  E  Q  S  Q  I  I  S  K  D  D  *  K  N  L  I  *  E  N  *  V  Q  V  Y  L  T  T  E  F  S  C  E  N  T  T  K  N  E  H  L  P  Q  I  C  L  S  N  R  N  F  S  T  S  F  F  K  L  F  L  S  I  F  S  L  I  L  G  N  T  L  L  K  F  L  R  Q  S  F  N  Q  F  L  S  L  F  Q  C  Q  T  C  *  S  P  N  S  L  N  G  R  N  S  S  I  T  R  H  F  I  D  D  Y  I  K  F  R  L  L  L  N  H  S  W  S  I  C  G  C  A  T  R  G  S  D  D  G  S  G  S  E  G  C  G  *  N  S  K  L  I  L  K  V  L  D  E  F  L  G  I  S  E  G  *  V  G  D  F  I  S  E  L  D  Y  L  L  R  C  F  D  G  G  E  R  A  D  E  S  C  P  A  V  V  Q  F  G  S  A  N  G  K  F  *  G  F  G  G  E  G  N  *  S  V  R  G  A  C  G  C  W  R  N  R  R  G  R  T  K  G  N  C  G  *  C  G  S  H  C  S  *  A  K  E  K  L  G  E  *  K  R  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0190P16.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91358" stop="91690"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LHQIPSSPQPQLEHLRLRHQGKRRRQRERRMRLKLQAYPEGTRRVSGHQRGLSWRFHLRAGLPSPVLRRRREGGRELPGGGTVWECEWEVLGFWWGRKLKRAWSLRLLEK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0190P16.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91165" stop="91476"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AIETLAPASSSCFLASSASSLETPSLNFLGNPSINSLASFNAKLVKALTALMVAILALLGTSSMTTSNSVFSSTTAGASAAAPPGEATTAAGAKDAAETPSLS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0190P16.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91477" stop="91776"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RYSTSFWASARVKLEISSPSWTTFSGASTAARGRTRVARRWYSLGVRMGSSRVLVGKEIEACVELAVAGEIGEGERRVIVDNVEAIVAELKRNWESERGR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="89786" e_stop="89819"/>
            <exon e_start="90226" e_stop="90233"/>
            <exon e_start="91042" e_stop="91776"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.737" e_score="0.588"/>
          <exon-intron don_prob="0.784" acc_prob="0.000" e_score="0.500"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.588">
            <gDNA_exon_boundary e_start="89786" e_stop="89819" e_length="34"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.737">
            <gDNA_intron_boundary i_start="89820" i_stop="90225" i_length="406"/>
          </intron>
          <exon e_serial="2" e_score="0.500">
            <gDNA_exon_boundary e_start="90226" e_stop="90233" e_length="8"/>
          </exon>
          <intron i_serial="2" don_prob="0.784" acc_prob="0.000">
            <gDNA_intron_boundary i_start="90234" i_stop="91041" i_length="808"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="91042" e_stop="91776" e_length="735"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89786" stop="89819"/>
              <exon start="90226" stop="90233"/>
              <exon start="91042" stop="91762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722772" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91060" stop="91729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91460" stop="91776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281577" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91477" stop="91776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281578" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTATTTATTCGAAATTGTTTGTCATATTGTATTT : GTTTAAGT : AAATCATAAGCAAAGACGACTGAAAAAACTTGATTTGAGAAAATTGAGTACAAGTATATCTAACAACTGAATTCTCTTGCGAAAACACAACTAAGAACGAACATTTACCACAAATTTGTTTAAGCAATAGAAACTTTAGCACCAGCTTCTTCAAGTTGTTTCTTAGCATCTTCAGCCTCATCCTTGGAAACACCCTCCTTAAATTTCTTAGGCAATCCTTCAATCAATTCCTTAGCCTCTTTCAATGCCAAACTTGTTAAAGCCCTAACAGCCTTAATGGTCGCAATTCTAGCATTACTCGGCACTTCATCGATGACTACATCAAATTCCGTCTTCTCCTCAACCACAGCTGGAGCATCTGCGGCTGCGCCACCAGGGGAAGCGACGACGGCAGCGGGAGCGAAGGATGCGGCTGAAACTCCAAGCTTATCCTGAAGGTACTCGACGAGTTTCTGGGCATCAGCGAGGGTTAAGTTGGAGATTTCATCTCCGAGCTGGACTACCTTCTCCGGTGCTTCGACGGCGGCGAGAGGGCGGACGAGAGTTGCCCGGCGGTGGTACAGTTTGGGAGTGCGAATGGGAAGTTCTAGGGTTTTGGTGGGGAAGGAAATTGAAGCGTGCGTGGAGCTTGCGGTTGCTGGAGAAATAGGAGAGGGAGAACGAAGGGTAATTGTGGATAATGTGGAAGCCATTGTAGCTGAGCTAAAGAGAAATTGGGAGAGTGAAAGAGGGAGA</gDNA_template>
            <first_frame> L  F  I  R  N  C  L  S  Y  C  I   : C  L  S  :  K  S  *  A  K  T  T  E  K  T  *  F  E  K  I  E  Y  K  Y  I  *  Q  L  N  S  L  A  K  T  Q  L  R  T  N  I  Y  H  K  F  V  *  A  I  E  T  L  A  P  A  S  S  S  C  F  L  A  S  S  A  S  S  L  E  T  P  S  L  N  F  L  G  N  P  S  I  N  S  L  A  S  F  N  A  K  L  V  K  A  L  T  A  L  M  V  A  I  L  A  L  L  G  T  S  S  M  T  T  S  N  S  V  F  S  S  T  T  A  G  A  S  A  A  A  P  P  G  E  A  T  T  A  A  G  A  K  D  A  A  E  T  P  S  L  S  *  R  Y  S  T  S  F  W  A  S  A  R  V  K  L  E  I  S  S  P  S  W  T  T  F  S  G  A  S  T  A  A  R  G  R  T  R  V  A  R  R  W  Y  S  L  G  V  R  M  G  S  S  R  V  L  V  G  K  E  I  E  A  C  V  E  L  A  V  A  G  E  I  G  E  G  E  R  R  V  I  V  D  N  V  E  A  I  V  A  E  L  K  R  N  W  E  S  E  R  G  R </first_frame>
            <second_frame>  Y  L  F  E  I  V  C  H  I  V  F  :  V  *  V :   N  H  K  Q  R  R  L  K  K  L  D  L  R  K  L  S  T  S  I  S  N  N  *  I  L  L  R  K  H  N  *  E  R  T  F  T  T  N  L  F  K  Q  *  K  L  *  H  Q  L  L  Q  V  V  S  *  H  L  Q  P  H  P  W  K  H  P  P  *  I  S  *  A  I  L  Q  S  I  P  *  P  L  S  M  P  N  L  L  K  P  *  Q  P  *  W  S  Q  F  *  H  Y  S  A  L  H  R  *  L  H  Q  I  P  S  S  P  Q  P  Q  L  E  H  L  R  L  R  H  Q  G  K  R  R  R  Q  R  E  R  R  M  R  L  K  L  Q  A  Y  P  E  G  T  R  R  V  S  G  H  Q  R  G  L  S  W  R  F  H  L  R  A  G  L  P  S  P  V  L  R  R  R  R  E  G  G  R  E  L  P  G  G  G  T  V  W  E  C  E  W  E  V  L  G  F  W  W  G  R  K  L  K  R  A  W  S  L  R  L  L  E  K  *  E  R  E  N  E  G  *  L  W  I  M  W  K  P  L  *  L  S  *  R  E  I  G  R  V  K  E  G   </second_frame>
            <third_frame>   I  Y  S  K  L  F  V  I  L  Y  L :   F  K   : *  I  I  S  K  D  D  *  K  N  L  I  *  E  N  *  V  Q  V  Y  L  T  T  E  F  S  C  E  N  T  T  K  N  E  H  L  P  Q  I  C  L  S  N  R  N  F  S  T  S  F  F  K  L  F  L  S  I  F  S  L  I  L  G  N  T  L  L  K  F  L  R  Q  S  F  N  Q  F  L  S  L  F  Q  C  Q  T  C  *  S  P  N  S  L  N  G  R  N  S  S  I  T  R  H  F  I  D  D  Y  I  K  F  R  L  L  L  N  H  S  W  S  I  C  G  C  A  T  R  G  S  D  D  G  S  G  S  E  G  C  G  *  N  S  K  L  I  L  K  V  L  D  E  F  L  G  I  S  E  G  *  V  G  D  F  I  S  E  L  D  Y  L  L  R  C  F  D  G  G  E  R  A  D  E  S  C  P  A  V  V  Q  F  G  S  A  N  G  K  F  *  G  F  G  G  E  G  N  *  S  V  R  G  A  C  G  C  W  R  N  R  R  G  R  T  K  G  N  C  G  *  C  G  S  H  C  S  *  A  K  E  K  L  G  E  *  K  R  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0190P16.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91358" stop="91690"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LHQIPSSPQPQLEHLRLRHQGKRRRQRERRMRLKLQAYPEGTRRVSGHQRGLSWRFHLRAGLPSPVLRRRREGGRELPGGGTVWECEWEVLGFWWGRKLKRAWSLRLLEK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0190P16.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91165" stop="91476"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AIETLAPASSSCFLASSASSLETPSLNFLGNPSINSLASFNAKLVKALTALMVAILALLGTSSMTTSNSVFSSTTAGASAAAPPGEATTAAGAKDAAETPSLS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0190P16.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91477" stop="91776"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RYSTSFWASARVKLEISSPSWTTFSGASTAARGRTRVARRWYSLGVRMGSSRVLVGKEIEACVELAVAGEIGEGERRVIVDNVEAIVAELKRNWESERGR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="95452" PGL_stop="93275"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94196" e_stop="93275"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="94196" e_stop="93275" e_length="922"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94196" stop="93730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94114" stop="93433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94114" stop="93609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94002" stop="93470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93982" stop="93275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93756" stop="93281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716153" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGACCTTTTATGTAGATGACTGCGGTGAATTTGAGAGATGGAACCAAGCTACCTGCTGACATGGTCATCGTAGGCATTGGAATTCGACCAAATACCAGCCTCTTTGAAGGGCAACTTACTCTTGAGAAAGGAGGGATAAAAGTCAATGGCCAAATGCAGTCAAGCAACAGCTCAGTCTATGCTGTTGGGGATGTTGCAACTTTTCCTGTCAAAATTTTCGGTGAGACGCGGAGACTTGAACACGTTGATTCTGCAAGGAAGTCAGCAAGGCATGCAGTTGCTGCAATCATGGAACCAGAGAAAACAACAGAGTTTGACTACTTGCCATTCTTCTACTCCAGAGTCTTCACACTCTCTTGGCAGTTCTATGGTGACAGTACTGGTGATGTAGTCCATTTTGGGGATTTCTTGGGGAATAGCTTTGGTGCATATTGGGTGAACAAAGGTCACGTCGTTGGGTCTTTTCTAGAGGGTGGAACCAAAGAGGAGTATGAGGCTATTGCAAAGATCACAAGGCTCAAACCAGCAATTGAGGACTTGTCTGATCTCGAAACGCAGGGTTTAGGATTTGCATTGACATTGAGTGATAAACCAGAGCCATCGGAGGCTGTTGTTGTCAGCAGTAGTTCGGGTTCCACTTTTGTAACAGAGAAACCTTTACATGTTTGGCATGCAACAGCTGGAGTCATTTTGGCTGCTTCAATTGCTGCCTTTGCATACTGGTATGGTAGGAGGCGTAGAAGGTGGTAAATGTCTTGTTCCCCACGGAAGATTTTTACACGTCGATTCCTGCTGTGTTGTATGATTTTAGCTTAGAGAATTTGAAATACTTGGCCTGTAAATGGCTTCAATTTTACAAACATGTATTCTGTCTTTACAGTATATATCAATACACATTATCCTCAATCCCTCAGCATGCTCT</gDNA_template>
            <first_frame> G  P  F  M  *  M  T  A  V  N  L  R  D  G  T  K  L  P  A  D  M  V  I  V  G  I  G  I  R  P  N  T  S  L  F  E  G  Q  L  T  L  E  K  G  G  I  K  V  N  G  Q  M  Q  S  S  N  S  S  V  Y  A  V  G  D  V  A  T  F  P  V  K  I  F  G  E  T  R  R  L  E  H  V  D  S  A  R  K  S  A  R  H  A  V  A  A  I  M  E  P  E  K  T  T  E  F  D  Y  L  P  F  F  Y  S  R  V  F  T  L  S  W  Q  F  Y  G  D  S  T  G  D  V  V  H  F  G  D  F  L  G  N  S  F  G  A  Y  W  V  N  K  G  H  V  V  G  S  F  L  E  G  G  T  K  E  E  Y  E  A  I  A  K  I  T  R  L  K  P  A  I  E  D  L  S  D  L  E  T  Q  G  L  G  F  A  L  T  L  S  D  K  P  E  P  S  E  A  V  V  V  S  S  S  S  G  S  T  F  V  T  E  K  P  L  H  V  W  H  A  T  A  G  V  I  L  A  A  S  I  A  A  F  A  Y  W  Y  G  R  R  R  R  R  W  *  M  S  C  S  P  R  K  I  F  T  R  R  F  L  L  C  C  M  I  L  A  *  R  I  *  N  T  W  P  V  N  G  F  N  F  T  N  M  Y  S  V  F  T  V  Y  I  N  T  H  Y  P  Q  S  L  S  M  L  </first_frame>
            <second_frame>  D  L  L  C  R  *  L  R  *  I  *  E  M  E  P  S  Y  L  L  T  W  S  S  *  A  L  E  F  D  Q  I  P  A  S  L  K  G  N  L  L  L  R  K  E  G  *  K  S  M  A  K  C  S  Q  A  T  A  Q  S  M  L  L  G  M  L  Q  L  F  L  S  K  F  S  V  R  R  G  D  L  N  T  L  I  L  Q  G  S  Q  Q  G  M  Q  L  L  Q  S  W  N  Q  R  K  Q  Q  S  L  T  T  C  H  S  S  T  P  E  S  S  H  S  L  G  S  S  M  V  T  V  L  V  M  *  S  I  L  G  I  S  W  G  I  A  L  V  H  I  G  *  T  K  V  T  S  L  G  L  F  *  R  V  E  P  K  R  S  M  R  L  L  Q  R  S  Q  G  S  N  Q  Q  L  R  T  C  L  I  S  K  R  R  V  *  D  L  H  *  H  *  V  I  N  Q  S  H  R  R  L  L  L  S  A  V  V  R  V  P  L  L  *  Q  R  N  L  Y  M  F  G  M  Q  Q  L  E  S  F  W  L  L  Q  L  L  P  L  H  T  G  M  V  G  G  V  E  G  G  K  C  L  V  P  H  G  R  F  L  H  V  D  S  C  C  V  V  *  F  *  L  R  E  F  E  I  L  G  L  *  M  A  S  I  L  Q  T  C  I  L  S  L  Q  Y  I  S  I  H  I  I  L  N  P  S  A  C  S </second_frame>
            <third_frame>   T  F  Y  V  D  D  C  G  E  F  E  R  W  N  Q  A  T  C  *  H  G  H  R  R  H  W  N  S  T  K  Y  Q  P  L  *  R  A  T  Y  S  *  E  R  R  D  K  S  Q  W  P  N  A  V  K  Q  Q  L  S  L  C  C  W  G  C  C  N  F  S  C  Q  N  F  R  *  D  A  E  T  *  T  R  *  F  C  K  E  V  S  K  A  C  S  C  C  N  H  G  T  R  E  N  N  R  V  *  L  L  A  I  L  L  L  Q  S  L  H  T  L  L  A  V  L  W  *  Q  Y  W  *  C  S  P  F  W  G  F  L  G  E  *  L  W  C  I  L  G  E  Q  R  S  R  R  W  V  F  S  R  G  W  N  Q  R  G  V  *  G  Y  C  K  D  H  K  A  Q  T  S  N  *  G  L  V  *  S  R  N  A  G  F  R  I  C  I  D  I  E  *  *  T  R  A  I  G  G  C  C  C  Q  Q  *  F  G  F  H  F  C  N  R  E  T  F  T  C  L  A  C  N  S  W  S  H  F  G  C  F  N  C  C  L  C  I  L  V  W  *  E  A  *  K  V  V  N  V  L  F  P  T  E  D  F  Y  T  S  I  P  A  V  L  Y  D  F  S  L  E  N  L  K  Y  L  A  C  K  W  L  Q  F  Y  K  H  V  F  C  L  Y  S  I  Y  Q  Y  T  L  S  S  I  P  Q  H  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0190P16.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94181" stop="93447"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>732</number_coding_nucleotides>
                  <number_encoded_amino_acids>244</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MTAVNLRDGTKLPADMVIVGIGIRPNTSLFEGQLTLEKGGIKVNGQMQSSNSSVYAVGDVATFPVKIFGETRRLEHVDSARKSARHAVAAIMEPEKTTEFDYLPFFYSRVFTLSWQFYGDSTGDVVHFGDFLGNSFGAYWVNKGHVVGSFLEGGTKEEYEAIAKITRLKPAIEDLSDLETQGLGFALTLSDKPEPSEAVVVSSSSGSTFVTEKPLHVWHATAGVILAASIAAFAYWYGRRRRRW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="94595" e_stop="94538"/>
            <exon e_start="94181" e_stop="93275"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.967" acc_prob="0.999" e_score="0.983"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="94595" e_stop="94538" e_length="58"/>
          </exon>
          <intron i_serial="1" don_prob="0.967" acc_prob="0.999">
            <gDNA_intron_boundary i_start="94537" i_stop="94182" i_length="356"/>
          </intron>
          <exon e_serial="2" e_score="0.980">
            <gDNA_exon_boundary e_start="94181" e_stop="93275" e_length="907"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94595" stop="94538"/>
              <exon start="94181" stop="93281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94114" stop="93433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94114" stop="93609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94002" stop="93470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93982" stop="93275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93756" stop="93281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716153" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTTAAGTTTGTGAAAGGCACGGTCTTGACATCATTTGATTTCGACTCCAATGATAAG : ATGACTGCGGTGAATTTGAGAGATGGAACCAAGCTACCTGCTGACATGGTCATCGTAGGCATTGGAATTCGACCAAATACCAGCCTCTTTGAAGGGCAACTTACTCTTGAGAAAGGAGGGATAAAAGTCAATGGCCAAATGCAGTCAAGCAACAGCTCAGTCTATGCTGTTGGGGATGTTGCAACTTTTCCTGTCAAAATTTTCGGTGAGACGCGGAGACTTGAACACGTTGATTCTGCAAGGAAGTCAGCAAGGCATGCAGTTGCTGCAATCATGGAACCAGAGAAAACAACAGAGTTTGACTACTTGCCATTCTTCTACTCCAGAGTCTTCACACTCTCTTGGCAGTTCTATGGTGACAGTACTGGTGATGTAGTCCATTTTGGGGATTTCTTGGGGAATAGCTTTGGTGCATATTGGGTGAACAAAGGTCACGTCGTTGGGTCTTTTCTAGAGGGTGGAACCAAAGAGGAGTATGAGGCTATTGCAAAGATCACAAGGCTCAAACCAGCAATTGAGGACTTGTCTGATCTCGAAACGCAGGGTTTAGGATTTGCATTGACATTGAGTGATAAACCAGAGCCATCGGAGGCTGTTGTTGTCAGCAGTAGTTCGGGTTCCACTTTTGTAACAGAGAAACCTTTACATGTTTGGCATGCAACAGCTGGAGTCATTTTGGCTGCTTCAATTGCTGCCTTTGCATACTGGTATGGTAGGAGGCGTAGAAGGTGGTAAATGTCTTGTTCCCCACGGAAGATTTTTACACGTCGATTCCTGCTGTGTTGTATGATTTTAGCTTAGAGAATTTGAAATACTTGGCCTGTAAATGGCTTCAATTTTACAAACATGTATTCTGTCTTTACAGTATATATCAATACACATTATCCTCAATCCCTCAGCATGCTCT</gDNA_template>
            <first_frame> S  *  V  C  E  R  H  G  L  D  I  I  *  F  R  L  Q  *  *   : D  D  C  G  E  F  E  R  W  N  Q  A  T  C  *  H  G  H  R  R  H  W  N  S  T  K  Y  Q  P  L  *  R  A  T  Y  S  *  E  R  R  D  K  S  Q  W  P  N  A  V  K  Q  Q  L  S  L  C  C  W  G  C  C  N  F  S  C  Q  N  F  R  *  D  A  E  T  *  T  R  *  F  C  K  E  V  S  K  A  C  S  C  C  N  H  G  T  R  E  N  N  R  V  *  L  L  A  I  L  L  L  Q  S  L  H  T  L  L  A  V  L  W  *  Q  Y  W  *  C  S  P  F  W  G  F  L  G  E  *  L  W  C  I  L  G  E  Q  R  S  R  R  W  V  F  S  R  G  W  N  Q  R  G  V  *  G  Y  C  K  D  H  K  A  Q  T  S  N  *  G  L  V  *  S  R  N  A  G  F  R  I  C  I  D  I  E  *  *  T  R  A  I  G  G  C  C  C  Q  Q  *  F  G  F  H  F  C  N  R  E  T  F  T  C  L  A  C  N  S  W  S  H  F  G  C  F  N  C  C  L  C  I  L  V  W  *  E  A  *  K  V  V  N  V  L  F  P  T  E  D  F  Y  T  S  I  P  A  V  L  Y  D  F  S  L  E  N  L  K  Y  L  A  C  K  W  L  Q  F  Y  K  H  V  F  C  L  Y  S  I  Y  Q  Y  T  L  S  S  I  P  Q  H  A   </first_frame>
            <second_frame>  V  K  F  V  K  G  T  V  L  T  S  F  D  F  D  S  N  D  K  :  M  T  A  V  N  L  R  D  G  T  K  L  P  A  D  M  V  I  V  G  I  G  I  R  P  N  T  S  L  F  E  G  Q  L  T  L  E  K  G  G  I  K  V  N  G  Q  M  Q  S  S  N  S  S  V  Y  A  V  G  D  V  A  T  F  P  V  K  I  F  G  E  T  R  R  L  E  H  V  D  S  A  R  K  S  A  R  H  A  V  A  A  I  M  E  P  E  K  T  T  E  F  D  Y  L  P  F  F  Y  S  R  V  F  T  L  S  W  Q  F  Y  G  D  S  T  G  D  V  V  H  F  G  D  F  L  G  N  S  F  G  A  Y  W  V  N  K  G  H  V  V  G  S  F  L  E  G  G  T  K  E  E  Y  E  A  I  A  K  I  T  R  L  K  P  A  I  E  D  L  S  D  L  E  T  Q  G  L  G  F  A  L  T  L  S  D  K  P  E  P  S  E  A  V  V  V  S  S  S  S  G  S  T  F  V  T  E  K  P  L  H  V  W  H  A  T  A  G  V  I  L  A  A  S  I  A  A  F  A  Y  W  Y  G  R  R  R  R  R  W  *  M  S  C  S  P  R  K  I  F  T  R  R  F  L  L  C  C  M  I  L  A  *  R  I  *  N  T  W  P  V  N  G  F  N  F  T  N  M  Y  S  V  F  T  V  Y  I  N  T  H  Y  P  Q  S  L  S  M  L  </second_frame>
            <third_frame>   L  S  L  *  K  A  R  S  *  H  H  L  I  S  T  P  M  I  R :   *  L  R  *  I  *  E  M  E  P  S  Y  L  L  T  W  S  S  *  A  L  E  F  D  Q  I  P  A  S  L  K  G  N  L  L  L  R  K  E  G  *  K  S  M  A  K  C  S  Q  A  T  A  Q  S  M  L  L  G  M  L  Q  L  F  L  S  K  F  S  V  R  R  G  D  L  N  T  L  I  L  Q  G  S  Q  Q  G  M  Q  L  L  Q  S  W  N  Q  R  K  Q  Q  S  L  T  T  C  H  S  S  T  P  E  S  S  H  S  L  G  S  S  M  V  T  V  L  V  M  *  S  I  L  G  I  S  W  G  I  A  L  V  H  I  G  *  T  K  V  T  S  L  G  L  F  *  R  V  E  P  K  R  S  M  R  L  L  Q  R  S  Q  G  S  N  Q  Q  L  R  T  C  L  I  S  K  R  R  V  *  D  L  H  *  H  *  V  I  N  Q  S  H  R  R  L  L  L  S  A  V  V  R  V  P  L  L  *  Q  R  N  L  Y  M  F  G  M  Q  Q  L  E  S  F  W  L  L  Q  L  L  P  L  H  T  G  M  V  G  G  V  E  G  G  K  C  L  V  P  H  G  R  F  L  H  V  D  S  C  C  V  V  *  F  *  L  R  E  F  E  I  L  G  L  *  M  A  S  I  L  Q  T  C  I  L  S  L  Q  Y  I  S  I  H  I  I  L  N  P  S  A  C  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0190P16.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94594" stop="94538"/>
                    <exon start="94181" stop="93447"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>789</number_coding_nucleotides>
                  <number_encoded_amino_acids>263</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VKFVKGTVLTSFDFDSNDKMTAVNLRDGTKLPADMVIVGIGIRPNTSLFEGQLTLEKGGIKVNGQMQSSNSSVYAVGDVATFPVKIFGETRRLEHVDSARKSARHAVAAIMEPEKTTEFDYLPFFYSRVFTLSWQFYGDSTGDVVHFGDFLGNSFGAYWVNKGHVVGSFLEGGTKEEYEAIAKITRLKPAIEDLSDLETQGLGFALTLSDKPEPSEAVVVSSSSGSTFVTEKPLHVWHATAGVILAASIAAFAYWYGRRRRRW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="95452" e_stop="95245"/>
            <exon e_start="94181" e_stop="93275"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.804" acc_prob="0.999" e_score="0.981"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="95452" e_stop="95245" e_length="208"/>
          </exon>
          <intron i_serial="1" don_prob="0.804" acc_prob="0.999">
            <gDNA_intron_boundary i_start="95244" i_stop="94182" i_length="1063"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="94181" e_stop="93275" e_length="907"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95452" stop="95245"/>
              <exon start="94181" stop="93764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94114" stop="93433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94114" stop="93609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94002" stop="93470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93982" stop="93275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93756" stop="93281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716153" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGAGTTTGGAGTGAGTGGCTCAGATGCTGAGAGTGTATGTTATTTACGGGATTTGGCTGATGCAAACAGGCTGGTTAATGTGATGCAATCTAGCGGTGGTGGCAATGCTGTTGTAATTGGTGGTGGCTACATAGGAATGGAATGTGCTGCTTCTTTGGTGATCGGCAAAATAAATGTCACCATGGTCTTTCCAGAAGCACACTGTA : ATGACTGCGGTGAATTTGAGAGATGGAACCAAGCTACCTGCTGACATGGTCATCGTAGGCATTGGAATTCGACCAAATACCAGCCTCTTTGAAGGGCAACTTACTCTTGAGAAAGGAGGGATAAAAGTCAATGGCCAAATGCAGTCAAGCAACAGCTCAGTCTATGCTGTTGGGGATGTTGCAACTTTTCCTGTCAAAATTTTCGGTGAGACGCGGAGACTTGAACACGTTGATTCTGCAAGGAAGTCAGCAAGGCATGCAGTTGCTGCAATCATGGAACCAGAGAAAACAACAGAGTTTGACTACTTGCCATTCTTCTACTCCAGAGTCTTCACACTCTCTTGGCAGTTCTATGGTGACAGTACTGGTGATGTAGTCCATTTTGGGGATTTCTTGGGGAATAGCTTTGGTGCATATTGGGTGAACAAAGGTCACGTCGTTGGGTCTTTTCTAGAGGGTGGAACCAAAGAGGAGTATGAGGCTATTGCAAAGATCACAAGGCTCAAACCAGCAATTGAGGACTTGTCTGATCTCGAAACGCAGGGTTTAGGATTTGCATTGACATTGAGTGATAAACCAGAGCCATCGGAGGCTGTTGTTGTCAGCAGTAGTTCGGGTTCCACTTTTGTAACAGAGAAACCTTTACATGTTTGGCATGCAACAGCTGGAGTCATTTTGGCTGCTTCAATTGCTGCCTTTGCATACTGGTATGGTAGGAGGCGTAGAAGGTGGTAAATGTCTTGTTCCCCACGGAAGATTTTTACACGTCGATTCCTGCTGTGTTGTATGATTTTAGCTTAGAGAATTTGAAATACTTGGCCTGTAAATGGCTTCAATTTTACAAACATGTATTCTGTCTTTACAGTATATATCAATACACATTATCCTCAATCCCTCAGCATGCTCT</gDNA_template>
            <first_frame> E  E  F  G  V  S  G  S  D  A  E  S  V  C  Y  L  R  D  L  A  D  A  N  R  L  V  N  V  M  Q  S  S  G  G  G  N  A  V  V  I  G  G  G  Y  I  G  M  E  C  A  A  S  L  V  I  G  K  I  N  V  T  M  V  F  P  E  A  H  C   : N  D  C  G  E  F  E  R  W  N  Q  A  T  C  *  H  G  H  R  R  H  W  N  S  T  K  Y  Q  P  L  *  R  A  T  Y  S  *  E  R  R  D  K  S  Q  W  P  N  A  V  K  Q  Q  L  S  L  C  C  W  G  C  C  N  F  S  C  Q  N  F  R  *  D  A  E  T  *  T  R  *  F  C  K  E  V  S  K  A  C  S  C  C  N  H  G  T  R  E  N  N  R  V  *  L  L  A  I  L  L  L  Q  S  L  H  T  L  L  A  V  L  W  *  Q  Y  W  *  C  S  P  F  W  G  F  L  G  E  *  L  W  C  I  L  G  E  Q  R  S  R  R  W  V  F  S  R  G  W  N  Q  R  G  V  *  G  Y  C  K  D  H  K  A  Q  T  S  N  *  G  L  V  *  S  R  N  A  G  F  R  I  C  I  D  I  E  *  *  T  R  A  I  G  G  C  C  C  Q  Q  *  F  G  F  H  F  C  N  R  E  T  F  T  C  L  A  C  N  S  W  S  H  F  G  C  F  N  C  C  L  C  I  L  V  W  *  E  A  *  K  V  V  N  V  L  F  P  T  E  D  F  Y  T  S  I  P  A  V  L  Y  D  F  S  L  E  N  L  K  Y  L  A  C  K  W  L  Q  F  Y  K  H  V  F  C  L  Y  S  I  Y  Q  Y  T  L  S  S  I  P  Q  H  A   </first_frame>
            <second_frame>  K  S  L  E  *  V  A  Q  M  L  R  V  Y  V  I  Y  G  I  W  L  M  Q  T  G  W  L  M  *  C  N  L  A  V  V  A  M  L  L  *  L  V  V  A  T  *  E  W  N  V  L  L  L  W  *  S  A  K  *  M  S  P  W  S  F  Q  K  H  T  V  :  M  T  A  V  N  L  R  D  G  T  K  L  P  A  D  M  V  I  V  G  I  G  I  R  P  N  T  S  L  F  E  G  Q  L  T  L  E  K  G  G  I  K  V  N  G  Q  M  Q  S  S  N  S  S  V  Y  A  V  G  D  V  A  T  F  P  V  K  I  F  G  E  T  R  R  L  E  H  V  D  S  A  R  K  S  A  R  H  A  V  A  A  I  M  E  P  E  K  T  T  E  F  D  Y  L  P  F  F  Y  S  R  V  F  T  L  S  W  Q  F  Y  G  D  S  T  G  D  V  V  H  F  G  D  F  L  G  N  S  F  G  A  Y  W  V  N  K  G  H  V  V  G  S  F  L  E  G  G  T  K  E  E  Y  E  A  I  A  K  I  T  R  L  K  P  A  I  E  D  L  S  D  L  E  T  Q  G  L  G  F  A  L  T  L  S  D  K  P  E  P  S  E  A  V  V  V  S  S  S  S  G  S  T  F  V  T  E  K  P  L  H  V  W  H  A  T  A  G  V  I  L  A  A  S  I  A  A  F  A  Y  W  Y  G  R  R  R  R  R  W  *  M  S  C  S  P  R  K  I  F  T  R  R  F  L  L  C  C  M  I  L  A  *  R  I  *  N  T  W  P  V  N  G  F  N  F  T  N  M  Y  S  V  F  T  V  Y  I  N  T  H  Y  P  Q  S  L  S  M  L  </second_frame>
            <third_frame>   R  V  W  S  E  W  L  R  C  *  E  C  M  L  F  T  G  F  G  *  C  K  Q  A  G  *  C  D  A  I  *  R  W  W  Q  C  C  C  N  W  W  W  L  H  R  N  G  M  C  C  F  F  G  D  R  Q  N  K  C  H  H  G  L  S  R  S  T  L  * :   *  L  R  *  I  *  E  M  E  P  S  Y  L  L  T  W  S  S  *  A  L  E  F  D  Q  I  P  A  S  L  K  G  N  L  L  L  R  K  E  G  *  K  S  M  A  K  C  S  Q  A  T  A  Q  S  M  L  L  G  M  L  Q  L  F  L  S  K  F  S  V  R  R  G  D  L  N  T  L  I  L  Q  G  S  Q  Q  G  M  Q  L  L  Q  S  W  N  Q  R  K  Q  Q  S  L  T  T  C  H  S  S  T  P  E  S  S  H  S  L  G  S  S  M  V  T  V  L  V  M  *  S  I  L  G  I  S  W  G  I  A  L  V  H  I  G  *  T  K  V  T  S  L  G  L  F  *  R  V  E  P  K  R  S  M  R  L  L  Q  R  S  Q  G  S  N  Q  Q  L  R  T  C  L  I  S  K  R  R  V  *  D  L  H  *  H  *  V  I  N  Q  S  H  R  R  L  L  L  S  A  V  V  R  V  P  L  L  *  Q  R  N  L  Y  M  F  G  M  Q  Q  L  E  S  F  W  L  L  Q  L  L  P  L  H  T  G  M  V  G  G  V  E  G  G  K  C  L  V  P  H  G  R  F  L  H  V  D  S  C  C  V  V  *  F  *  L  R  E  F  E  I  L  G  L  *  M  A  S  I  L  Q  T  C  I  L  S  L  Q  Y  I  S  I  H  I  I  L  N  P  S  A  C  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0190P16.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95277" stop="95245"/>
                    <exon start="94181" stop="93447"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>765</number_coding_nucleotides>
                  <number_encoded_amino_acids>255</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MSPWSFQKHTVMTAVNLRDGTKLPADMVIVGIGIRPNTSLFEGQLTLEKGGIKVNGQMQSSNSSVYAVGDVATFPVKIFGETRRLEHVDSARKSARHAVAAIMEPEKTTEFDYLPFFYSRVFTLSWQFYGDSTGDVVHFGDFLGNSFGAYWVNKGHVVGSFLEGGTKEEYEAIAKITRLKPAIEDLSDLETQGLGFALTLSDKPEPSEAVVVSSSSGSTFVTEKPLHVWHATAGVILAASIAAFAYWYGRRRRRW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 462 chains have been computed
$ 
$ memory statistics:
$ 1483832 bytes spliced alignments in total
$ 393 spliced alignments have been stored
$ 3775 bytes was the average size of a spliced alignment
$ 41776 bytes predicted gene locations in total
$ 16 predicted gene locations have been stored
$ 2611 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 514 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 09:55:13
-->
