<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 10:00:35"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U602385" ref_strand="+" ref_description="SGN-U602385 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>cgattcgaaacttgtctgcatgcaggtcttctttctctacttcttacagctgttttttttagttttattcatttttaatttgcttttagtaaattagtcaatttttctgctttctcactttaaatatcctgtcaaatttgtatatcttcagtaatttattgaaatcactgatttctaaaacaattgctgaagagtcttttcaattgagtgtcagagacatattcattgaactgggctacaccaacagaaagtggaccgttcaatataaggagacacatggtttttaaccaactagtttttggacatgtacatcccaaattaactagaatatgattttgcataatcacataaaattattgaaaaatatttttgagtaacaaaacacacattaattaagattcatgaatgtgattcttcatttgggacttcatggttgagcccccctcccccccccccccccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="1720" stop="2780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2020" g_stop="2480" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-U602385" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U602385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2020" e_stop="2480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATTCGAAACTTGTCTGCATGCAGGTCTTCTTTCTCTACTTCTTACAGCTGTTTTTTTTAGTTTTATTCATTTTTAATTTGCTTTTAGTAAATTAGTCAATTTTTCTGCTTTCTCACTTTAAATATCCTGTCAAATTTGTATATCTTCAGTAATTTATTGAAATCACTGATTTCTAAAACAATTGCTGAAGAGTCTTTTCAATTGAGTGTCAGAGACATATTCATTGAACTGGGCTACACCAACAGAAAGTGGACCGTTCAATATAAGGAGACACATGGTTTTTAACCAACTAGTTTTTGGACATGTACATCCCAAATTAACTAGAATATGATTTTGCATAATCACATAAAATTATTGAAAAATATTTTTGAGTAACAAAACACACATTAATTAAGATTCATGAATGTGATTCTTCATTTGGGACTTCATGGTTGAGCCCCCCTCCCCCCCCCCCCCCCC</genome_strand>
        <mrna_strand>CGATTCGAAACTTGTCTGCATGCAGGTCTTCTTTCTCTACTTCTTACAGCTGTTTTTTTTAGTTTTATTCATTTTTAATTTGCTTTTAGTAAATTAGTCAATTTTTCTGCTTTCTCACTTTAAATATCCTGTCAAATTTGTATATCTTCAGTAATTTATTGAAATCACTGATTTCTAAAACAATTGCTGAAGAGTCTTTTCAATTGAGTGTCAGAGACATATTCATTGAACTGGGCTACACCAACAGAAAGTGGACCGTTCAATATAAGGAGACACATGGTTTTTAACCAACTAGTTTTTGGACATGTACATCCCAAATTAACTAGAATATGATTTTGCATAATCACATAAAATTATTGAAAAATATTTTTGAGTAACAAAACACACATTAATTAAGATTCATGAATGTGATTCTTCATTTGGGACTTCATGGTTGAGCCCCCCTCCCCCCCCCCCCCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U567594" ref_strand="+" ref_description="SGN-U567594 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|157345523|emb|CAO14821.1| (e_value=3e-83) unnamed; (*ATH) AT3G01410.1 (e_value=2e-78) | Symbol: None | RNase H domain-containing protein, low similarity to GAG-POL precursor (Oryza sativa (japonica cultivar-group)) GI:5902445; contains Pfam profile: PF00075 RNase H | chr3:153446-155606 REVERSE | Aliases: T13O15.5, T13O15_5; (*SWP) sp|P64955|Y2228_MYCTU (e_value=2e-18) Uncharacterized protein Rv2228c/MT2287 OS=Mycobacterium tuberculosis GN=Rv2228c; ">
      <seq>gcaagtcccaactactcccttcactctcttcctctgctcgtggtggagtaacttgcaaagccaagtaaacgcgttggagttggacacataaatgggggacgaaaaggatgctttttatgtcgtgcataaaggggatgtgatcgctgtctataagaacctcagtgatttacaagctctgctacgatcttctgttggtgaaccagctataagtgtttataaagggtatcacctggctaagcaatcagaagagtatttggcatctcatggactcaaaaatgcaatgtattctatggatttcagtgatgttcgagatgatctctttgggatactcgtcccatgcccttttcggcaacctggctcttcgaaagataaaattatggggaagaatcttccggagaagaggatgcagatggaggtggttgcatctccttcgttttcagccgctggtcagcaaaaacatgccacattagacaattgcctagaaattcccccgatttcgtcatattgtcccccctacatacagtgttcatgcattcttgagtttgatggggcttcaaaggggaatcctggaccagctggtgctggtgccgtgctgcgtgctgcagatggaagtatggttttccggttgcgtgaaggtgtgggtgtggcaactaacaacgttgctgaatatagaggtgtaatcttagggctaaaatatgctcttgagaaaggtttcaaacatgtaaaagttaagggtgactcaaaactcgtctgcatgcagactcaaggaatctggaaatgcaagaaccagaacatggctgagctatccaagattgtgaaagagcttaaagatcattttgtatcattccagatcacccatatttacagagaattcaacactgaagctgatgcccaggcaaatttagccgtgtatcttaagagtggtgaatttcaagtggaatgtgacaagaaaacaacttaatattgtgaagtcaccaactaccccaacttgcttgggggattttgtgaaggatgaatgacactcaagaccgatgcataatggaccttctctggtattagtttttttttttgtagatatataatctgaatcatctggattagagaaacttctgtttaggggcctgctcgaatccattattctcttctcacttgcaatggaaattaattagttctctaaagctaactattctagccccctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="4445" stop="12219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4744" g_stop="4783" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4784" i_stop="5073" i_length="290">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5074" g_stop="5223" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="190" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5224" i_stop="5444" i_length="221">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5445" g_stop="5603" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="349" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5604" i_stop="7417" i_length="1814">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7418" g_stop="7477" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="409" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7478" i_stop="8073" i_length="596">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8074" g_stop="8172" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="508" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="8173" i_stop="9475" i_length="1303">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9476" g_stop="9583" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="616" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="9584" i_stop="9662" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="9663" g_stop="9806" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="760" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="9807" i_stop="10984" i_length="1178">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="10985" g_stop="11092" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="761" r_stop="868" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="11093" i_stop="11521" i_length="429">
            <donor d_prob="0.740" d_score="0.98"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="11522" g_stop="11573" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="869" r_stop="920" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="11574" i_stop="11640" i_length="67">
            <donor d_prob="0.616" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="11641" g_stop="11919" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="921" r_stop="1199" r_length="279" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-U567594" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1199</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U567594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4744" e_stop="4783"/>
          <exon e_start="5074" e_stop="5223"/>
          <exon e_start="5445" e_stop="5603"/>
          <exon e_start="7418" e_stop="7477"/>
          <exon e_start="8074" e_stop="8172"/>
          <exon e_start="9476" e_stop="9583"/>
          <exon e_start="9663" e_stop="9806"/>
          <exon e_start="10985" e_stop="11092"/>
          <exon e_start="11522" e_stop="11573"/>
          <exon e_start="11641" e_stop="11919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGTCCCAACTACTCCCTTCACTCTCTTCCTCTGCTCGGTAAGAATCTTCATTGTATTCTTTCACTTTTCTATGTTTTCAGAAATCCTAATTCGTTTATCTTTGTGTCTAAAGTACGATTTTTATTCAATACAAAAAAACCCTAATTGAGATGGTAATTGAGTATCATTGCTACTATATTAACTGCAACTGATCATACATGCAGGGTAATATGTATACTGAAAATTGTTCAGTGAGTTTAGAATGTAGTTTTTTTTTTTTCTGGAACTTGGACTTTAAGTATTTGTTTCTGTGTTTTCACTAAGTAATACTGTGTTGTGTTGATACAGTGGTGGAGTAACTTGCAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCTGTACGTTTCCTTTAATGTTTTTTCTGCTTTTGGGCCTTAGACGGCCTTATCTGTTGGACTACTTTTTTTGGAGTCATGTAGAGCTCAAGTATAAGAAGAGTCTAATTATTACAGCTTTTTAACAATGATGAAGAAATAGAGCTTAGTTGATTTGAGCACAAGTAATAATATTATCAGATGCTCTTTTGATGTATTTTCTATTATTTTCTGTGATCTTTCAGGTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGGGTTAGAAAGTTTATCATTTTATTATTATTGAACTGGTGGTAGATGTAGTTGTTTAATCTATTTGACAATTTTGTCTTAACTGTTTAATAATAGCTGGGTCAAATTTTGGTTAATGTGGATGCTAAAATTTGTCCGGCATTTAAGTTTCATACCCATCCTTCTGTTATCATGATCTAGACCCAGTAGTGTGCTGCAACCTTGACTGACTGCATGATTGTTCGCGATCAGGCTGAACTAATCCTTCTCTTGATCTTCCAACTATGTTATCGGCAATTGAGTAGGATCAATTCTCCAATTAGTGACCTTTTACTGGAAACGGAGTGGTAGTGATTACCAGTCGTATCTACTCCATTTAGTGACTAGCAGTTGTATCTACTCCATTTAGTGAGTTTTTATGTCTTTAGGTGTATGTCTTTTGCGTAGCTTTGATATCTTCTTTTGCGTGGCGCTGGTGCTTCCGTGTAGCTCCTTTTTCTAAAGAAAATGGACAAATATTGAATGCAACTGTTATTTACCGCTTTGACATGATATCCATCTCATTTTTCCTCTTTGAAGCACTTTCATCTGATTGTTGAGATAAGAGATAGCTCTTCAGCGCTCTCTATTGTCTTTTCCTTCCAATTTGTCTCATGACACATCATTTTGGCGCTGCAGAAATGGTTTTGAGCTCATGAGATTAATTTTTCCTATGTAGCATAGGTTCTAAATAATAAAGTGCCCTTGTGTTTTGGAAGAGCAAAATATCGCTCCATCTTAGACCATCATAATAGGACAATCATTACTGGAAGAATTACTCTGGGATGATGTGTCTTTATATCTTTGCTTATACAGTTTTTATTGAATTCATAGCTGAGGCCCATATTTGGTAGAGATTCTGATTTTTTTTTTAACTAAAATATATTTAGGTATATAGAAAATAAAATTAATATTGTTTTGCTAGCATTGATTCTTTAATGGTGATTTTTGAATGGATGACACATAAAATTGATGTCATTGGATAATTTTGTACCACCAGCAGATGCATGAGAAAGGAAGTGAATATTTACTTAGATTTGTATGTATTGAAATATAGAAATTGAAAGATGTAGGACTGGAACTGGGAAGAAATCATTTATTTTTGCATTAGATGAATAAATACTGTTTCAAAGCTAAAAAAAACGATGAATACTATTGAAAAGCTTAATGTGAATAAACTGCTGTTTTTTTTAAAAAAATCTTAAGTGTTTTTCCGATTATGTGGTGCGTGGTAGCATTTCAAAGAGAAAATGTCATACATGCCTACTTTTTGTGGCGCATACTTCTTTTTGATAATGCTACTGCCATATGTTATATTGCTTCAAGGCTAATTTGGTTCATGGGTGGAAAGGGGTCATATATGTCTCTGACGCAGAACTGACTACTGTTACTTGTGGTCACACAAACTTGTCAAGTAGCCTTACATATGATATTCTTGGGATCCAATTTGATATCTTTGATAGGTTAATTCACTTGGTTGATTTGTTAGTTTTTCCTCGCTTTGTCATTGCCATGACACTACTTCCTCTATTGTGTCTTGCGACCACTGACTGGTAATTAAAGAGTGCACATAATACTGCTTGTACATTTTTCAGCTATACCTACTTGAAAAACTTAGATGTTTTAACATTCAATTATTGATATGTTTGTTCCCGTTTGCTCTGTCAAATTCAGCAGTCTATGGTTTATAATTGTGCCTTGAAGAAAACCAAACTTTCAGCATGTTTTCTAGTAACAATTTTACATTAAAGACGATATCATGCATGCTGATTTTTCATTTTTTTTTTCTGTTTTTGTAGCAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAGGTAATTTCTTAATGGTCAATCCAGATTATTCTTACATTGATAGGATGGGGTATGTCTTTCTTGAAAGGTTCATAACAGTTATACTTTCTTTATGCCCAACTTCAGTCATCAAAAAAACTATATCATCAGTTACTACAATGCCCTAACATGTTGTGAAGTAGGATGGCATGGAAATTTCGGATGGTGTTTATTATTAGGCTTGTGCTTTTCCTGGAATAAGAAACTAATTGTCTGGTCTAGGGATGGCGGTTTCCTCTATAGCTCTTGAAGTAAAATGAGGATACTCATCTAGTGGTGGTATAAATGTCAAGGATAAGCCTGTTTGCTGCATGTAGTTGCTCTAATAACGAAGTTGTGCTTCACATTTATAGTTTCTAGTATAAAACTGATTTATTGTCCTAAGAACTCAATTTTGTCGATGGTTCAACTCACAGGTTTTAGTTAATCTTGTCTCGCCTTATGATAATTTGTTCGGTCCTCTATTTTGTTTAATATACTTTTCTAATTTAATTGAGTCAGCATGTGAAAGTCTTCCTATTATGAAAAGGTGTGTGTAGTGTATTTGATATTCACATGATTATTTTTCTTACATTCAGATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGTGTAAGTATATTATTTTACCTAACAATTCTTTGTATCAATACGTTTAAATTCTTGTCATTGTCTGCTTTATCTGGATGTTGACATTCTTGGGGTGGGGTGAGGGTGGTGATTTGGTGGGTGGTTAGCCTTGGAAAGGGCTTGCTCCTATGTTTTGACTTTATTCTGCTGCTGGCCGAAACTAGTGAGGATAGTGATGCGTATTGGAGCTGATTTGGAAAATAAAAGGTTGAGAAGTCCTGATTCGGCAACCACTGATCCAAGGGGGACCAAGTGATTCTTAAATCAAACTGTAAGGGCAAAGTGGAACATTGTTGGTTAACGTTGCGCAAAAGTCCAAAGTTGGAAGATGGTGACAAAATTTATATGTAATCTATGTTGCTGGGATTCTCCAAGAAATAGTGCTGCACCCATGCTAGATCCTCCAAAATGCACTACTTTTGAAGGATTCGACATGCTCTCATCAACATTTTAGAGTCCGAGCAACATAACTTGTATTAAGTTTATTTTAGAATGTAAGGGGTCGTTTGGTACAAAAATTAATGACACACTGATTAGTAATGCAAGGATTACTAATGCAGGGGTAAGTAGGGGTTAGTAGTGCAGGAATATGTAATGCAGGGTTTACTTTTACCAAATGTTTGGCTCATTGTTTCCTACCCCATCTTGTGTTTGGATTAAAACTCTATAAGAAGTTTTTTTCCAATTATACCCTTGAATTATTATGCAATTGGGTCAAGAAAGATAATTCCCTGCAGTCTTTTGTAACTTCTGGTTTTGGTACCTTTTTGGTACTTTAGGCAATAAACCTTTACCTTATAAACAAAAAAAAAATATTTTTCTATGGCTCCCTAACTTGCTAGGGGTTGAACAATTTTGTTGTCATGTTTGCTATTTTTTCTCTTGAATTATTTAAGGATAACTAGTTGTCATATTAATGAATTGATCACTCACAAAATGTCAATTTTCAATTTAAAAAAGATAAACCCCATCTACTTTTAAAACGAAAAGACGGTAAACAATAAGAAAATTAAATAAATCATCTACATTTATATATATATATATATATATATATATATATATACACACACACACACACATAGATGATTGAAGAAACAGCGTAAAAGAATCTATTTGGACTTTGTTCTTATGTGCTAAAAAAAGAAAAAAAGGTTCCCGTTAAACTTATCTTTTGAGACATTTTGTAGTGTATCGGCACTTCAGTTCCAAGTCGATATCATTCTACTATCTGTATGTGATCTTTGCTTCTAACTTGGAGGAACATTTTGTAACTTGATACCTTCAGCCCCCCTACATACAGTGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCTGCAGATGGAAGTATGGTATGCTCCCTTTCCATTTAGGAGATGTGGTTTGTCACCATAAATTTACAGGTTTTCGACTTGTAGTTCTTTTCTGTAGGTTTTCCGGTTGCGTGAAGGTGTGGGTGTGGCAACTAACAACGTTGCTGAATATAGAGGTGTAATCTTAGGGCTAAAATATGCTCTTGAGAAAGGTTTCAAACATGTAAAAGTTAAGGGTGACTCAAAACTCGTCTGCATGCAGGTCTTCTTTACTCTTCTTACTTCTGTTTTTGTTTTATCTTGATCTTCCCTTAAGCAAATTAGTCAATTATTTCTGCTTTTCCACTTTTAATATCCTGTCAGATTTATATATTCCAGTAACTTGTTGAAACAACTGAGTTCTAAAGCAATTGCTGAAGAACTTTTTCCGCTGATGTCCTAGCAATTAAGAGTGTCTGAGACATACTTATAAACCCCAGGCTACACAAAGATGCCCCAGAAAGTAGACCATTCCAAATAATGATAAAGTTGATCTCTGTTTATGGACTATGGTATTAAGTATTATCATCTTAAGTCATCCCTAGTTAGCCTGGGATGGAATAGCCGAAGTATTATCTTTAGTGTATACTCCACAGGTTGTATATGTATACTCCAAAATCACACAGTGGAATCCACACTGTGGATAACATGACTGGGTATGTTAGGGAGTACTAGATAGTTTAGAAGTGCACTCGAATAAGGTGAACTACAAAAACTAATTTGAGTTTATTATTATGTAATTCTGCATATAACTTTTTTCTTTTTATGAGGCAAAGTCGGTTCAGCTACATAAATCTAGAAATCAATTAATACTATATTACATTCAACACTTGACAGTGTTTTAAGAAAAGAAGAGAGAGAAATGATCCAAGGAAGCTTTTAAAAAGAAATGGGAAAAGCTAAGCATTATCCACCAAGTTTTGAATTGTGTCTCATTGATCCTCGGGGATTTCTGTTATATTAAAAAATGACAGAGCTAAGAGATGATGTGGCATAGAAGAATGAGCAGCAGTAGGCAAGCAGTTTGGATCCCCACATTGTCTTCGGAAAAATTGCTTCTGTTCATCCCAAAGTGAGCTGGAGAATAAAGGTATAGGTTAATTTGATTGTTTTGCAGAATGCCTAAGAGATTTTGCAGTGACAGATCTGGGAATGAGTATAAAAACCTTATATGATTCGGTATAAGCTTCCTTCTTGATGGCACCTTGCCCCTTCCATTCTAAGAGACACCCAAACCAGTTCAAAAGTGTAGCTATTCTTGCCCTTGTAACCTGTGTGACCTTATTCTGGGATCATGTGTTCTTGCGGTGCTATTTATATTGCATTAAGTATTAAGTTATTGCTGGAACTGCTTCAGGGATGATCTCTCATTCTTTAATTTTTTTTTTAATCATGGAACAGACTCAAGGAATCTGGAAATGCAAGAACCAGAACATGGCTGAGCTATCCAAGATTGTGAAAGAGCTTAAAGATCATTTTGTATCATTCCAGATCAACCATATTTACAGAGTATGGCCAACTTTCTCCTCTTTTGCTAATTCAGAGCTTACTGAGCCTGTCTATCAGAATTTTGATCTTTGAAGTCCTTATTATATCTTGCATCTGCATCTTATTTCTGTGGTGAAAATGCTATAGTGTGTGTTATGTGTGGTCTCCTGTGACCAGAAAAGGTGCAAGTGGTGGGTGCTTGAATGTCATGTTTAATTTATGCAACAATGAGTTTCATCCATCTTGCTTATGAGCTCTATGAAATTGGTTTCATCACCTTGTTGCTAGAAGTGAATAGTCATGTTTGTCCGGTCTATTAATTCACTTAGTTTCGCATTTCTCTTCGTGAAACGTTTAAACTAAACTTGTACATATGTACTAAACTCATGATTGTTTAAAAAGCCATCTTCTCATCTCATTCTGAGGGGTTTTACTTGTTTGACATATCAGGAATTCAACACTGAAGCTGATGCCCAGGCAAATTTAGCCGTGTATCTTAAGAGTAAGGGTCTTTCTTTTGGTAGTTACATACATCTCTCTTTCCCGGTGATAAGAAAAATTTCTTGCAGGTGGTGAATTTCAAGTGGAATGTGACAAGAAAACAACTTAATATTGTGAAGTCACCAACTACCCCAACTTGCTTGGGGGATTTTGTGAAGGATGAATGACACTCAAGACCGATGCATAATGGATCTTCTCTGGTCTTGTTTTTTTTTTTTGTAGATATATAATCTGAATCATCTGGATTAGAGAAACTTCTGTTTAGGGGCCTGCTCGAATCCATTATTCTCTTCTCACTTGCAATGGAAATTAATTAGTTCTCTAAAGCTAACTATTCTAGCACTTTG</genome_strand>
        <mrna_strand>GCAAGTCCCAACTACTCCCTTCACTCTCTTCCTCTGCTCG..................................................................................................................................................................................................................................................................................................TGGTGGAGTAACTTGCAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCT.............................................................................................................................................................................................................................GTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCCTACATACAGTGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCTGCAGATGGAAGTATG...............................................................................GTTTTCCGGTTGCGTGAAGGTGTGGGTGTGGCAACTAACAACGTTGCTGAATATAGAGGTGTAATCTTAGGGCTAAAATATGCTCTTGAGAAAGGTTTCAAACATGTAAAAGTTAAGGGTGACTCAAAACTCGTCTGCATGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAAGGAATCTGGAAATGCAAGAACCAGAACATGGCTGAGCTATCCAAGATTGTGAAAGAGCTTAAAGATCATTTTGTATCATTCCAGATCACCCATATTTACAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTCAACACTGAAGCTGATGCCCAGGCAAATTTAGCCGTGTATCTTAAGA...................................................................GTGGTGAATTTCAAGTGGAATGTGACAAGAAAACAACTTAATATTGTGAAGTCACCAACTACCCCAACTTGCTTGGGGGATTTTGTGAAGGATGAATGACACTCAAGACCGATGCATAATGGACCTTCTCTGGTATTAGTTTTTTTTTTTGTAGATATATAATCTGAATCATCTGGATTAGAGAAACTTCTGTTTAGGGGCCTGCTCGAATCCATTATTCTCTTCTCACTTGCAATGGAAATTAATTAGTTCTCTAAAGCTAACTATTCTAGCCCCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U602874" ref_strand="+" ref_description="SGN-U602874 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gattttacctaacaattctttgtatcaatacgtttaaattcttgtcattgtctgctttatctggatgttgacattcttggggtggggtgagggtggtgatttggtgggtggttagccttggaaagggcttgctcctatgttttgactttattctgctgctggccgaaactagtgaggatagtgatgcgtattggagctgatttggaaaataaaaggttgagaagtcctgattcggcaaccactgatccaagggggaccaagtgattcttaaatcaaactgtaagggcaaagtggaacattgttggttaacgttgcgcaaaagtccaaagttggaagatggtgacaaaatttatatgtaatctatgttgctgggattctccaagaaatagtgctgcacccatgctagatcctccaaaatgcactacttttgaaggattcgacatgctctcatcaacattttagagtccgagcaacataacttgtattaagtttattttagaatgtaaggggtcgtttggtacaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="7884" stop="9007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8183" g_stop="8707" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-U602874" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U602874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8183" e_stop="8707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTTACCTAACAATTCTTTGTATCAATACGTTTAAATTCTTGTCATTGTCTGCTTTATCTGGATGTTGACATTCTTGGGGTGGGGTGAGGGTGGTGATTTGGTGGGTGGTTAGCCTTGGAAAGGGCTTGCTCCTATGTTTTGACTTTATTCTGCTGCTGGCCGAAACTAGTGAGGATAGTGATGCGTATTGGAGCTGATTTGGAAAATAAAAGGTTGAGAAGTCCTGATTCGGCAACCACTGATCCAAGGGGGACCAAGTGATTCTTAAATCAAACTGTAAGGGCAAAGTGGAACATTGTTGGTTAACGTTGCGCAAAAGTCCAAAGTTGGAAGATGGTGACAAAATTTATATGTAATCTATGTTGCTGGGATTCTCCAAGAAATAGTGCTGCACCCATGCTAGATCCTCCAAAATGCACTACTTTTGAAGGATTCGACATGCTCTCATCAACATTTTAGAGTCCGAGCAACATAACTTGTATTAAGTTTATTTTAGAATGTAAGGGGTCGTTTGGTACAAAA</genome_strand>
        <mrna_strand>GATTTTACCTAACAATTCTTTGTATCAATACGTTTAAATTCTTGTCATTGTCTGCTTTATCTGGATGTTGACATTCTTGGGGTGGGGTGAGGGTGGTGATTTGGTGGGTGGTTAGCCTTGGAAAGGGCTTGCTCCTATGTTTTGACTTTATTCTGCTGCTGGCCGAAACTAGTGAGGATAGTGATGCGTATTGGAGCTGATTTGGAAAATAAAAGGTTGAGAAGTCCTGATTCGGCAACCACTGATCCAAGGGGGACCAAGTGATTCTTAAATCAAACTGTAAGGGCAAAGTGGAACATTGTTGGTTAACGTTGCGCAAAAGTCCAAAGTTGGAAGATGGTGACAAAATTTATATGTAATCTATGTTGCTGGGATTCTCCAAGAAATAGTGCTGCACCCATGCTAGATCCTCCAAAATGCACTACTTTTGAAGGATTCGACATGCTCTCATCAACATTTTAGAGTCCGAGCAACATAACTTGTATTAAGTTTATTTTAGAATGTAAGGGGTCGTTTGGTACAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U576181" ref_strand="+" ref_description="SGN-U576181 Tomato 200607#2 [17 ESTs aligned] (*GB) gi|157345524|emb|CAO14822.1| (e_value=2e-31) unnamed; (*ATH) AT5G14910.1 (e_value=9e-30) | Symbol: None | heavy-metal-associated domain-containing protein, Pfam profile PF00403: Heavy-metal-associated domain | chr5:4823717-4825373 FORWARD | Aliases: F2G14.30, F2G14_30; ">
      <seq>ggttccttccatttgtaatctggcttctggataagagtgaaaaatcactctgaggaatttgcgtcggaaaaaaaaaatatggcgaccgtctcagcattttccgtttgtagagccaaatctcattctcgaattccccattcttcatctaatgcaattccccagcttttcccaatgcaatttcttcggtgtcaaagcaacaggagcattggcggtggttattcttgctcttcaagttcggtgaaagcgaaggtacctttgagaactaccaggatatgttctgcaactgaggaagatggtgctactgctgttgccgaagaagaatctgctgctcccactacatctgatcaaactgtttctgtttccgtctccccttccgacgttctaactatgttctttcaggcagaaggaacaatgaatgaagctgctattccttccgtgactaactctttagaggatattgaaggcattacaggtctcaaaattcaagttgtcgagggcattgcaagtgtcgagttaacaaagcaaacgacaatacaagctacaggggtggcttcaagtttggttgaaacaatacaaggttcaggcttcaagttgcaaacattgaatctgagctttcaggatgaagaagatattagctaagtggtggcttgtagaattcagagacatgataggctgatatctttcacgggcatcctgagagatctctgtttatttgtatgccagtagtttcagtaagcctatatctgtaacatttttgtgttatgcagttctttgatctttttcttccttagcatatgttcctttccgcaacttataaaaatacttgtgaattactaatgatcagcagaatcattttgtttacttgttgaaacaagtggtatacgattggaaaaagtacttcttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="12050" stop="15766"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12350" g_stop="12748" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12749" i_stop="13446" i_length="698">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13447" g_stop="13500" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="453" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13501" i_stop="14056" i_length="556">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14057" g_stop="14116" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="513" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14117" i_stop="15073" i_length="957">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15074" g_stop="15466" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="906" r_length="393" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-U576181" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>906</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U576181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12350" e_stop="12748"/>
          <exon e_start="13447" e_stop="13500"/>
          <exon e_start="14057" e_stop="14116"/>
          <exon e_start="15074" e_stop="15466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTCCTTCCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAGGTTAACCCCTTCTTTTCTATTTTGGTAAAGTTTCTAGTTTTTTCATTAAAGAACTCAACCAATGTGAACCCGAAAGGGTTGCTGTAGGTTAATAACTAGTGTAGGAATAGTTAATTGTGGTTGTAATGAATTTCAGTGGTTTGAACTTGGTTCTTGTGAAGTTTCTAATATTGTCAAAAAAATCAACCAGTGTGAATTTCTGATTAAAGTGAAGAGGGTTGCAGTAGGTTAATGCCTAGTGTGTACGAATAGTTTATCTGGTAGTAATGAATTTCAGTCTGTGCTCATATTGGTATGAAATGGGTTCTTGTGAGGTGAATTTTATCCAAAAATTCTAAGTAAGTGAATTCGCTAAGTTAGGATAATGGAGGAGGAGGAGGTTAATTCTCAGTGTAAGGCTGTAAGCATAGTAAATTTATTAAGAATTCTGATAGTACTGGTATTTGATAGTGCTTGCTCATATTGGACTATTGGAGTGAAATGGGTCGGATAAGAACGCATATACAGGATTGGTATAGCCCAACTCCAACTAGTTTGGCAGTGAGGTTTAGTTAATTTATTGATTGATTGTCTGATTAGTGCTCAATGTGCTAGTTTTGCTTTATTTTTCTTTCAAATTGTTAGTTGTCTGTAACCCTTAAACTTCTTGTGGATTCTTCTGTGAATGGTAAACTGAACTTATACCTTTCTTATCACAGGCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAGGTAAATTGAGTGTGTAAAATTCAAAGCTTCTTCTGGTACATGCTAATTTGTTGACACTTCACAAAACACATTACTTGTCTGCTGCATTTGAGATACAATGTAGTAGCAGTTGCAGGGACTCTGAGTTTTTATTTTTCTGTGTAATATTAATGCTACTTGTGAATCACCAGAAGACTCGCTATTACATTGAAGAGTGAAATAAACAACACAGGTTGTTTACACTTTAAAGGACAAATTAAAGAAAGGAAAACGTTCTGATCTTTCTGAGGGATTTAAACTCTTTTTTTCTTGGAACTAGGCATATCTGAGATCTTATAATCTAGAATCAAAGAATCAGATACAGATATTCATCTGATTCTAGTTTTTCAGAAGCTGCAAGAGAGAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTTACAGGAAATTTCTTTGTAGAAAGTTTACAGCTCAATCAGCATAATGCACCTTAGAGATATATTAAAGTACTAAATTCTGAAGCATGCTTTAGGTTCCTTGTAGTTTCCTACATTCAATATGCAATATAGTGGACAACTTCCAGGTGGACTATCTTGTGCTGCCTTTTTGTGTTTGGAGTTTCTCTATAAATGATAGGAACAGTCTATCTAAATGAACGATATCCTTTAACTTTTCATGGTGAGGGAAAAATAAACTTTTAGTTCTTCAAAAGTAACCTAAAAAATTATTATTTGTGAAAAGAAGGCTGTTTAAGTACTTATTACATTTTAATCTTTAAAATATTCTGTAGAAAATCTAACAGTGTCAAAGCGCTATCCTTTGAAGTTTCTATTTCCCCTAGCATACAAATAACCTCAAATCCCAAAAAGTGTAAGAATTTCATTTACATAGATCAAGCATATAAAATTGGAAAGTAAAGTTGCCATCTATTTCCATCAGGATTCAATTCTGAGTTCCTTATTTCAGCTTATTGCCTGATCTGCATATTAGTATCCTTGGTGGCATGTAAGTGTCTAGGATCTTGATCATCTAATTGTGCATCCAATATAAGACCTTAGGAAATTGATGAGATTAGGGCTAAAGGTAAGAAAGAACTCCCAGTGTTGTCCTAAATTAGGAGAAATCACCTTCCCTTCTTATGAATAGAGAACGAGAGAGAACCATTATTGTGGTGAAAATTTTCCTCTAAACTTACTGTTACCTAAGAATATAAGAAGCATTTAAGGACATATCAGATGTCTCTATTTTCTTCATTCAGAACTTCAATAAGGCATTTGAAGAACCAAGAAATGAAACATGGTATGTCCTTGGTTCAGTGTTAACCTCTCTTTTTATTTGATGTAGTTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTTGGTTGAAACAATACAAGGTTCAGGCTTCAAGTTGCAAACATTGAATCTGAGCTTTCAGGATGAAGAAGATATTAGCTAAGTGGTGGCTTGTAGAATTCAGAGACATGATAGGCTGATATCTTTCACGGGCATCCTGAGAGATCTCTGTTTATTTGTATGCCAGTAGTTTCAGTAAGCCTATATCTGTAACATTTTTGTGTTATGCAGTTCTTTGATCTTTTTCTTCCTTAGCATATGTTCCTTTCCGCAACTTATAAAAATACTTGTGAATTACTAATGATCAGCAGAATCATTTTGTTTACTTGTTGAAACAAGTGGTATACGATTGGAAAAGGTACTTCTTATG</genome_strand>
        <mrna_strand>GGTTCCTTCCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTTGGTTGAAACAATACAAGGTTCAGGCTTCAAGTTGCAAACATTGAATCTGAGCTTTCAGGATGAAGAAGATATTAGCTAAGTGGTGGCTTGTAGAATTCAGAGACATGATAGGCTGATATCTTTCACGGGCATCCTGAGAGATCTCTGTTTATTTGTATGCCAGTAGTTTCAGTAAGCCTATATCTGTAACATTTTTGTGTTATGCAGTTCTTTGATCTTTTTCTTCCTTAGCATATGTTCCTTTCCGCAACTTATAAAAATACTTGTGAATTACTAATGATCAGCAGAATCATTTTGTTTACTTGTTGAAACAAGTGGTATACGATTGGAAAAAGTACTTCTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U576182" ref_strand="+" ref_description="SGN-U576182 Tomato 200607#2 [2 ESTs aligned] ">
      <seq>agccaaatctcattctcgaattccccattcttcatctaangcaattccccagcttttcccaatgcaatttcttcggtgtcaaagcaacaggagcattggcggtggttattcttgctcttcaagttcggtgaaagcgaaggtacctttgaaaactaccaggatatgttctgcaactgaggaaaatggtgctactgctgttgccnaaaaaaaatctgctgctcccactacatctgancaaactgtttctgtttccgtctccccttccnacnttctaactatgttctttcaggcanaaggaacaatgaatgaagctgctattccttccgtgactaactctttagaggtaaattgagtgtgtaaaattcaaagcttcttctggtacatgctaatttgttgacacttcacaaaacacattacttgtctgctgcatttgagatacaatgtagtagcagttgcagggactctgagtttttatttttctgtgtaatattaatgctacttgtgaatcaccagaagactcgctattacattgaagagtgaaataaacaacacaggttgtttacactttaaaggacaaattaaagaaaggaaaacgttctgatctttctgagggatttaaactctttttttcttggaactaggcatatctgagatcttataatctagaatcaaagaatcagatacagatattcatctgattctagtttttcagaagctgcaagagagaactattgattttgtgaatgtttgatggagagctatatctctttctccacctctatcaaaacatcagattttagctaataattggaattgaagaataattgcaggttgccctaattaaaaaagaaaacaagtagttgtagtttgacctttatcgtctgtccatatgtatacaggatattgaaggcattacaggtctcaaaattcaagttgtcgaaggcattgcaagtgtcgaggtgattcacatatataatgcttctcttacattgacttattagcctattctgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="12160" stop="14469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12460" g_stop="12748" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12749" i_stop="13446" i_length="698">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13447" g_stop="14169" g_length="723"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="1012" r_length="723" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-U576182" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>1012</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U576182" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12460" e_stop="12748"/>
          <exon e_start="13447" e_stop="14169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAGGTTAACCCCTTCTTTTCTATTTTGGTAAAGTTTCTAGTTTTTTCATTAAAGAACTCAACCAATGTGAACCCGAAAGGGTTGCTGTAGGTTAATAACTAGTGTAGGAATAGTTAATTGTGGTTGTAATGAATTTCAGTGGTTTGAACTTGGTTCTTGTGAAGTTTCTAATATTGTCAAAAAAATCAACCAGTGTGAATTTCTGATTAAAGTGAAGAGGGTTGCAGTAGGTTAATGCCTAGTGTGTACGAATAGTTTATCTGGTAGTAATGAATTTCAGTCTGTGCTCATATTGGTATGAAATGGGTTCTTGTGAGGTGAATTTTATCCAAAAATTCTAAGTAAGTGAATTCGCTAAGTTAGGATAATGGAGGAGGAGGAGGTTAATTCTCAGTGTAAGGCTGTAAGCATAGTAAATTTATTAAGAATTCTGATAGTACTGGTATTTGATAGTGCTTGCTCATATTGGACTATTGGAGTGAAATGGGTCGGATAAGAACGCATATACAGGATTGGTATAGCCCAACTCCAACTAGTTTGGCAGTGAGGTTTAGTTAATTTATTGATTGATTGTCTGATTAGTGCTCAATGTGCTAGTTTTGCTTTATTTTTCTTTCAAATTGTTAGTTGTCTGTAACCCTTAAACTTCTTGTGGATTCTTCTGTGAATGGTAAACTGAACTTATACCTTTCTTATCACAGGCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAGGTAAATTGAGTGTGTAAAATTCAAAGCTTCTTCTGGTACATGCTAATTTGTTGACACTTCACAAAACACATTACTTGTCTGCTGCATTTGAGATACAATGTAGTAGCAGTTGCAGGGACTCTGAGTTTTTATTTTTCTGTGTAATATTAATGCTACTTGTGAATCACCAGAAGACTCGCTATTACATTGAAGAGTGAAATAAACAACACAGGTTGTTTACACTTTAAAGGACAAATTAAAGAAAGGAAAACGTTCTGATCTTTCTGAGGGATTTAAACTCTTTTTTTCTTGGAACTAGGCATATCTGAGATCTTATAATCTAGAATCAAAGAATCAGATACAGATATTCATCTGATTCTAGTTTTTCAGAAGCTGCAAGAGAGAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTT</genome_strand>
        <mrna_strand>AGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAANGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAAAACTACCAGGATATGTTCTGCAACTGAGGAAAATGGTGCTACTGCTGTTGCCNAAAAAAAATCTGCTGCTCCCACTACATCTGANCAAACTGTTTCTGTTTCCGTCTCCCCTTCCNACNTTCTAACTATGTTCTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCANAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAGGTAAATTGAGTGTGTAAAATTCAAAGCTTCTTCTGGTACATGCTAATTTGTTGACACTTCACAAAACACATTACTTGTCTGCTGCATTTGAGATACAATGTAGTAGCAGTTGCAGGGACTCTGAGTTTTTATTTTTCTGTGTAATATTAATGCTACTTGTGAATCACCAGAAGACTCGCTATTACATTGAAGAGTGAAATAAACAACACAGGTTGTTTACACTTTAAAGGACAAATTAAAGAAAGGAAAACGTTCTGATCTTTCTGAGGGATTTAAACTCTTTTTTTCTTGGAACTAGGCATATCTGAGATCTTATAATCTAGAATCAAAGAATCAGATACAGATATTCATCTGATTCTAGTTTTTCAGAAGCTGCAAGAGAGAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAAGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U587946" ref_strand="+" ref_description="SGN-U587946 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>tctgttgggaagctgcaatatagaactattgattttgtgaatgttggatggagagctatatctctttctccacctctatcaaaacatcagattttagctaataattggaattgaagaataattgcaggttgccctaattaaaaaagaaaacaagtagttgtagtttgacctttatcgtctgtccatatgtatacaggatattgaaggcattacaggtctcaaaattcaagttgtcgagggcattgcaagtgtcgaggtgattcacatatataatgcttctcttacattgacttattagcctattctgttacaggaaatttctttgtagaaagtttacagctcaatcagcataatgcaccttagagatatattaaagtactaaattctgaagcatgctttaggttccttgtagtttcctacattcaatatgcaatatagtggacaacttccaggtggactatcttgtgctgcctttttgtgtttggagtttctctataaatgataggaacagtctatctaaatgaacgatatcctttaacttttgatggtgaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="13561" stop="14714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13861" g_stop="14414" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-U587946" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U587946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13861" e_stop="14414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTCAGAAGCTGCAAGAGAGAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTTACAGGAAATTTCTTTGTAGAAAGTTTACAGCTCAATCAGCATAATGCACCTTAGAGATATATTAAAGTACTAAATTCTGAAGCATGCTTTAGGTTCCTTGTAGTTTCCTACATTCAATATGCAATATAGTGGACAACTTCCAGGTGGACTATCTTGTGCTGCCTTTTTGTGTTTGGAGTTTCTCTATAAATGATAGGAACAGTCTATCTAAATGAACGATATCCTTTAACTTTTCATGGTGAGGG</genome_strand>
        <mrna_strand>TCTGTTGGGAAGCTGCAATATAGAACTATTGATTTTGTGAATGTTGGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTTACAGGAAATTTCTTTGTAGAAAGTTTACAGCTCAATCAGCATAATGCACCTTAGAGATATATTAAAGTACTAAATTCTGAAGCATGCTTTAGGTTCCTTGTAGTTTCCTACATTCAATATGCAATATAGTGGACAACTTCCAGGTGGACTATCTTGTGCTGCCTTTTTGTGTTTGGAGTTTCTCTATAAATGATAGGAACAGTCTATCTAAATGAACGATATCCTTTAACTTTTGATGGTGAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U597128" ref_strand="+" ref_description="SGN-U597128 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|218191057|gb|EEC73484.1| (e_value=5e-66) hypothetical; (*ATH) AT3G01380.1 (e_value=7e-61) | Symbol: None | phosphatidylinositolglycan class N (PIG-N) family protein, similar to phosphatidylinositolglycan class N short form GB:BAA82620 (gi:5631308) (Mus musculus) | chr3:144295-149835 REVERSE | Aliases: T13O15.2, T13O15_2; (*SWP) sp|Q4W9R7|MCD4_ASPFU (e_value=3e-28) GPI ethanolamine phosphate transferase 1 OS=Aspergillus fumigatus GN=mcd4; ">
      <seq>tcaagctgacatagcaccactgatgtccactcttcttggtctgccatgtcctgtcaactcggttggcaatctgcctcttcagtacatgaatctgaacaaggcagaagaagttgaagctgtgctggccaatacgaagcaaatcctcaatcagttccttcgaaagtcacagttaaagcaatcgacctcattatacatcaagcctttcaagcccttggctagttattcatcactattgcgtgaaattgagcaactgatttctctcaaagagtatgaaactgcaatgaaattatctgaacagcttaggagcttggcacttcaaggacttcactatttccagacatatgattggctgatgctgatgactgtaatcactcttggctatgttggttggatgatctatgtgatactccatgtcttgcaatcttatacatccctacctgcaaatatttttagcaaggagcaagtgcctagtccaagaagtacagctaagatacatcttttaggagggttgttgatgggagtagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="18505" stop="21574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18805" g_stop="18829" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18830" i_stop="18933" i_length="104">
            <donor d_prob="0.881" d_score="0.00"/>
            <acceptor a_prob="0.966" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18934" g_stop="19008" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="100" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19009" i_stop="19159" i_length="151">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19160" g_stop="19226" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="167" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19227" i_stop="19607" i_length="381">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19608" g_stop="19930" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="490" r_length="323" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19931" i_stop="21238" i_length="1308">
            <donor d_prob="0.985" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="21239" g_stop="21274" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="526" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-U597128" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U597128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18805" e_stop="18829"/>
          <exon e_start="18934" e_stop="19008"/>
          <exon e_start="19160" e_stop="19226"/>
          <exon e_start="19608" e_stop="19930"/>
          <exon e_start="21239" e_stop="21274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGCTGACATAGCACCACTGATGGTCGATTACCTTGTCCTCTTCTGACAGTCCTATCTTTGAAGTGTCTTTCTATCATATCAACTTCGTCTAAAGTCTGACTCTGATATGATCTCTAAAAATTGCAGTCCACTCTTCTTGGTCTGCCATGTCCTATCAACTCAGTTGGCAATCTGCCTCTTCAGTACATGAATCTGAACAAGGTAGCTGCATTACTATAAGTTCTCTGTCTATTTTGCACTGTACGACTGTGTGATGGATTGGGAGAGATATACTGGTTTGCTGGTTCTTTGGGGCTATTTTGTTCTTTGTATTGAGATAGAATGCAGGTCTTAAAATCACTTTTATGTCCAGGCAGAAGAAGTTGAAGCTGTGCTGGCCAATACGAAGCAAATCCTCAATCAGTTCCTTCGAAAGTCACGTATCCTTCCCTATAACTTAGATTGTTTTTCACTTCTAATTTCATTCTGCCTCACTCATCTTACATGTTATTTCCTAATTTTCTTTTTGTTGCAATTCACAACTTTCAGAGTTTTAAATGTCAGTTAAGATAGAACCTTATTAAAAGAAAATGTCAGTCAAAATAGAAGTAACTGGTAGAACGATTTAAGTATAGCATATACCAGAATTAGGACAAGTTACCAATTATTAGACCAATAGAGGGGCAAAGTGATAAAATTAATTCCTGTGCTGTCATTCCAAACTGCTTCATCAATGTAACTGGGTTCTGGGGCTTGTCCTGTTTTCACATTCTAAATTGATTTTTGGTTTCATCTTTTGAGCATCCTTGACAAATATGTAGAGTTAAAGCAGTCGACCTCATTATACATCAAGCCTTTCAAGCCCTTGGCTAGTTATTCATCACTATTGCGTGAAATTGAGCAACTGATTTCTCTCAAAGAGTATGAAACTGCAGTGAAATTATCTGAACATCTTAGGAGCTTGGCACTTCAAGGACTTCACTATTTTCAGACATATGATTGGCTGATGCTGATGACTGTAATCACTCTTGGCTATGTTGGTTGGATGATCTATGTCATACTCCATATCTTGCAATCTTATACATCCCTACCTGCAAATATTTTTAGCAAGGACCAAGTGCCTAATCCAAGAAGTACAGTTAAGGTACCTGTTTTGCTCTATATGCACGTGCTGTTGTGTATTTCTTTGTCTGTGTTGGTTAGAAGAGGGTTGTAAAGGGAAGGTTCAAAATAAATTATATGTCTGTTTGGTGTTGAAAGTGTGATAGATTAGTAGGAAAAAGGGAGGAGGAAATTGACATATAAAAGCATTTATGTATGAAAAGTACTCGTGTTGTGCAAGTTCAAGTAATTTTCTCTATTTATACTAAAACCAACAAAAATATCTTGACTGTTGATATATGATTTTAATTCGAGGCGGAGATATACAAAGGGTTGTCCCGTTGTTTTGCTACCTCTTTGAGATAGAGTACATCTAGTGACAAATATTGATATGCCAAAATTACACATGTTCCTAAATCATATAATCTATTTCATAGCTCCAGAAAGTTCAAAGGTGAGACCATAATCAGTTTATCTATGCATTGTAAGTGGGAGGAGCAGGTTTTCCACCAAAACTATAGAAAGTAAAGACTTACTAAGGAAAGAAATTGAAATGTAAGAGCAAAGTGGGAGTAATGACACCTGATGTTCATTTGGACATTAATTCTCTAGGTTTTTTTTCTTTCAACCCCCAAAGGTTTCTCCTTTCTTCTTTTTCTAAAATGTCCCATGAAAGTCATACCCATCTTGGAGACCATATTTGGTTATATTTTGTCTCTATTATGCCTGATCTCCAAAGCTATTGTATCTAGTGTTGTCAAAGGCACGCTAAAGCCTGATATGAGGCTCTAAACGTGTTGAGTGCTTCGCGTCACTTAGTATGTGCTTCACTGTCGTCATCAAGGTTTTAAGACATACAAACCTTGCCAATGAGTGGTTCTTGAAGAGACGGCACTAAAAAATTAATCTTTCAGTGTCTTTGTATGTTATATATGTTATTTGTGCTTATAATATTAGTCTTGGACTAAACATATGTAATTTTGTATCCATTTGCGTCTTTTTCATAAAAGCCACACTTTATTTGCGCTTTGCGCTTAAAGACCCAACAGACGTTAGAGTTATTTTTGTGTTTTTTGCTTTTCATAACACTGATGAATCAAGTGTTCATCTGGGACTTCTCATCAGGGAAATTCTTAAAAACTTATATTATCACGGTCCTCTATTGGCGTATTCATGCCTCTTCTTATTATACTATTTTGGCATTTAGAAATTGATGTTATTAGCACAAGTGTCTTCCTCCCATAAAAATAGATGGATATTCTTGACCGTCATTCGTAAGGTGATACTAGAAAGAATTGCTATCTGACCAATTGATTCCCATGTTCTTGCTTATATTCTTTTTCTATGGCAGATACATCTTTTAGGAGGGTTGTTGATGGGAGTAGCG</genome_strand>
        <mrna_strand>TCAAGCTGACATAGCACCACTGATG........................................................................................................TCCACTCTTCTTGGTCTGCCATGTCCTGTCAACTCGGTTGGCAATCTGCCTCTTCAGTACATGAATCTGAACAAG.......................................................................................................................................................GCAGAAGAAGTTGAAGCTGTGCTGGCCAATACGAAGCAAATCCTCAATCAGTTCCTTCGAAAGTCAC.............................................................................................................................................................................................................................................................................................................................................................................................AGTTAAAGCAATCGACCTCATTATACATCAAGCCTTTCAAGCCCTTGGCTAGTTATTCATCACTATTGCGTGAAATTGAGCAACTGATTTCTCTCAAAGAGTATGAAACTGCAATGAAATTATCTGAACAGCTTAGGAGCTTGGCACTTCAAGGACTTCACTATTTCCAGACATATGATTGGCTGATGCTGATGACTGTAATCACTCTTGGCTATGTTGGTTGGATGATCTATGTGATACTCCATGTCTTGCAATCTTATACATCCCTACCTGCAAATATTTTTAGCAAGGAGCAAGTGCCTAGTCCAAGAAGTACAGCTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACATCTTTTAGGAGGGTTGTTGATGGGAGTAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U604579" ref_strand="+" ref_description="SGN-U604579 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157345527|emb|CAO14825.1| (e_value=5e-69) unnamed; (*ATH) AT3G01380.1 (e_value=4e-49) | Symbol: None | phosphatidylinositolglycan class N (PIG-N) family protein, similar to phosphatidylinositolglycan class N short form GB:BAA82620 (gi:5631308) (Mus musculus) | chr3:144295-149835 REVERSE | Aliases: T13O15.2, T13O15_2; (*SWP) sp|O95427|PIGN_HUMAN (e_value=1e-23) GPI ethanolamine phosphate transferase 1 OS=Homo sapiens GN=PIGN; ">
      <seq>ggtttggctttcaactattcatagaacagagaagcaggaattattagtcctccaccaactgttgaattggtccatagctggcttctcgatgatacctcccacctcttttcagctactggtctcttatccaggctgacttccacttttccttggcgttgcacctcccttcctgcttctatcaatcggttatgaagcagtcttctatggtgctctcagtcttgcacttatagcatggatactggcggaaaatgcttatctccatataagcaagttcagatcatcagctccagtcaaatccatggaggatgataataggtgtctggagttatccgatatgaggatcccattaacttttatggtctttttcaatattgcattctttggaactggtaattttgcaagtattgcaagttttgagatctcctccgtgtatcgattcattacaattttcagtccttttctgatggcggcattacttattttcaagctgttgataccattcatacttgtcatatgtgcgttcagtgcaatcacaaaattggtgcaagttccattgttgggatgctattttctggntgatcttgtgctctgatgtaatgacaatccatttcttcttcctggtccgaaataaaggaagctggatggaaattggcaacagcattagccatttcggaattatgagtgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="21810" stop="25621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22110" g_stop="22189" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22190" i_stop="23199" i_length="1010">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23200" g_stop="23302" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="186" r_length="106" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23303" i_stop="23393" i_length="91">
            <donor d_prob="0.963" d_score="0.96"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23394" g_stop="23562" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="355" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23563" i_stop="23743" i_length="181">
            <donor d_prob="0.465" d_score="1.00"/>
            <acceptor a_prob="0.419" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23744" g_stop="23842" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="454" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23843" i_stop="23940" i_length="98">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23941" g_stop="23999" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="513" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="24000" i_stop="24908" i_length="909">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24909" g_stop="25014" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="620" r_length="107" r_score="0.981"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="25015" i_stop="25254" i_length="240">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25255" g_stop="25321" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="687" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-U604579" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U604579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22110" e_stop="22189"/>
          <exon e_start="23200" e_stop="23302"/>
          <exon e_start="23394" e_stop="23562"/>
          <exon e_start="23744" e_stop="23842"/>
          <exon e_start="23941" e_stop="23999"/>
          <exon e_start="24909" e_stop="25014"/>
          <exon e_start="25255" e_stop="25321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTGGCTTTCAACTATTCATAGAACAGAGAAGCAGGAATTATTAGTCCTCCACCAACTGTTGAATTGGTCCATAGCTGGTATTCTTTTTTTCTTTTCTCCGTATGCTAGTGTAGCTCAGTCTTAGAATTGTTCTCGGATGTCCTATGAACAGAATTGATGTAGCCTTTACACCCATTTATTCCTTCAATTTTTTGTTTTGTTAATGCAATGGGATGTTAAACAGTGAATTCGAAAATGGTGAGATTTTACATTTTCTTAATAATTGTTCTAGTAAAAGGCATGCTATCCAGACTTACTTTTCAAAATTTCTCTTCTCCTACTGGGTGTCTTACAGTTGCCCTCCTCACACAGCTGCTTGTCTTCATCAGCATTGGTGTCCCATGTCAAATGTGTAAGACATGAATATGGCATTAACTCAAACAAGAGTCTGTGTCATGTAGGTTGCATCCAGTCATACAACAGCTACACCTCAGTCCCAATCAAAATGGGATCGACTATATGAATGCTCACCGATTATGTTCCTCATTCATGTTCATCTCAGGCCAACATTTTACAAAATTTCAAATAACTAACTAAAAGTTTTCTATATTTCCTACTGGCATAAGAATCTCTAATAGGGCTTAAAAAACTCTGAGAAAGCACAAGACCTAAAAACTTGATAACATTACTAGAATAAATACTCAACTAATTGGTATCACCTATATAGATCATTTTCTTCTATTGTGCCCATCCACAAATTACAAAGAGATTGTAAAACTTCATTGACTCCTTCCATGTGATTTTATGAATAATTAGTAGGCTGTATCCCTTCATAAAGAAATAATATCTTTGGTAGACGTCAACTAGTTTATGGTAATGTATCGCGTTGTTGCATATCAGACTGTCCTTTGTTACTCTTGCCCTCATTTTCGGGCTCTTTTGGTTCATTTTAGTGATAAACTTTTATGAAGCTTTTCCTGACTAATTTTGTTTCTTTATAACTATTTGTTTCACTATTTTCTGTTCTTCAGCCTGAAATTTCACATATTTTGTTTTCTTTGTGAACATTTTAACAACCCTGTATTCATCATTTGACTTGTTTCTTTAGGCTTCTCGATGATA-CTCCCA-CTCTTTTCAGCTACTGGTCTCTTATCCAGGCTGACTTCCA-TTTTCCTTGGCGTTGCACCTCCCTTCCTGCTTCTATCAATCGGGTATCTCCATCATTTTGTTGCTTAGGCTAGGAGTAAATTCAATTTTATAACTTTATGAGTCAGAATCTATAAGCTTTTGAATCTCCTGCAGTTATGAAGCAGTCTTCTATGGTGCTCTCAGTCTTGCACTTATAGCATGGATACTGGCGGAAAATGCTTATCTCCATATAAGCAAGTTCAGATCATCAGCTCCAGTCAAATCCATGGAGGATGATAATAGGTGTCTGGAGTTATCCGATATGAGGATCCCATTAACTTTTGTAAGTTTTACGTTCTGTTTAGCTTAATGATGTTCTACTTATGGAAAAAAGAAAGACAGTGACATTGTCTTTAGCCTTGTTAATTTAACACTTTTGGGGTGTAAGCATCTAGCTCTGTTGTCTTTCTATATATCCAAATAGTGAAGTGTCTTAAATTGCTGATGAAATTTCTTCTTTTTAGATGGTCTTTTTCAATATTGCATTCTTTGGAACTGGTAATTTTGCAAGTATTGCAAGTTTTGAGATCTCCTCCGTGTATCGATTCATTACAATTTTCAGTGTAAGTGGAACTGAACATCCTTGTTTATGAATCCTTTGTTTCTTATTTTGCCTTTCATTTGCATATGGTGACAGATGCGATTGTTCCTTTTTTTGCAGCCTTTTCTGATGGCGGCATTACTTATTTTCAAGCTGTTGATACCATTCATACTTGTCATGTAAGTACAACTTGCAAATTTTCCTTCTTAACAGTTCGAATGGAAAACTACTGTAATTCAATGATTGTGGTGGAAATCTTTTCTTGGAGTTTCTAGGGCTTGGAGGTTGTTTTTCTCCCTCAAATTCATCCAAATTAGATGTGACAATTACCGACCACTCTTACATATCTAAAATATTGGTTTGAGGGATTGCCTGTTGCAGCGCTCAACTTTCACCTGTTGAGACACTCCTCGCTGCCTGGAGCAACTAGAAGATATTGTTAAAGCGTTGCAGCGCCCAAATTTCGACCGGTGCTACGGTGGCTGCTGTTTTCCACGAATATATCTAAATTATTTCCAACTCCAAATTGTTCTCCACTTGCTTCAATCCACTCCTCCTCATTTCCAAACATCCATATTACTTTCCAAATACAACTTTTGAGTGCTGAACACTCTTGTGGCAACTTAACCGCGTTATTAGTTGTGTTAGCCATAACTAGAGTGTAGAAATCTTCAGGGTATTTTACCATCTTTCTGTGTTGGGTGGTTGGGTTCTTCTTGGTATTACCTTGCAGCCTTTACATGTAGGCTGTAGCCCTGCAATTTCTTCTAGTGTGGGTGAAGTTCATTTGGTCATGATTACTCCTCTCTTAAAAGTTATTCAGTGCATTCCCTGTTTTAAAGTAATTGTTGGCTAATTCAAACTTTTAAGATAACAAAGTGCAGAGCACAAGAACTACCTGATCTTCACTGAGAACAAACTGCAGTATAGGAACCTATATTTATACGTCAAGAAGCCTTTAGAATTTTTGGAGACCAAGAAAATTTGTATTTGATATGCAAGTAGAAATATTTTGGAATTCTTGGTCTTGCTGAGATCAGTTGTGTACCATGGATGACTTTTATTTTTTTGTTGTGCATTAACTGCAGATGTGCGTTCAGTGCAATCACAAAATTGGTGCAAGTTCCATTGTTGGGATGCTATTTTCTGG-TGATCTTGTGCTCTGATGTAATGACAATCCATTTCTTCTTCCTGGTAAGACACTATTATTCCTCCTATGGTGCAATTCTCATATGTTTCTCCACCTACTTTCCATCCAATGTGTCTTGTTTGAAAAACTTAGGATTCCAGTATCAATATGCTCTTCTCTGTCATAATCTTCAACAGCTTTGAATTTTTCTGTTTCATGCTTCCGACTGTTTTATCTCCAGAAACATGATTCAGGGGGTTCATCATGGTTAGGATTCATCTTACTTGTTTTCTGATTGGTAATAGGTCCGAAATAAAGGAAGCTGGATGGAAATTGGCAACAGCATTAGCCATTTCGGAATTATGAGTGCTC</genome_strand>
        <mrna_strand>GGTTTGGCTTTCAACTATTCATAGAACAGAGAAGCAGGAATTATTAGTCCTCCACCAACTGTTGAATTGGTCCATAGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCTCGATGATACCTCCCACCTCTTTTCAGCTACTGGTCTCTTATCCAGGCTGACTTCCACTTTTCCTTGGCGTTGCACCTCCCTTCCTGCTTCTATCAATCGG...........................................................................................TTATGAAGCAGTCTTCTATGGTGCTCTCAGTCTTGCACTTATAGCATGGATACTGGCGGAAAATGCTTATCTCCATATAAGCAAGTTCAGATCATCAGCTCCAGTCAAATCCATGGAGGATGATAATAGGTGTCTGGAGTTATCCGATATGAGGATCCCATTAACTTTT.....................................................................................................................................................................................ATGGTCTTTTTCAATATTGCATTCTTTGGAACTGGTAATTTTGCAAGTATTGCAAGTTTTGAGATCTCCTCCGTGTATCGATTCATTACAATTTTCAGT..................................................................................................CCTTTTCTGATGGCGGCATTACTTATTTTCAAGCTGTTGATACCATTCATACTTGTCAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGCGTTCAGTGCAATCACAAAATTGGTGCAAGTTCCATTGTTGGGATGCTATTTTCTGGNTGATCTTGTGCTCTGATGTAATGACAATCCATTTCTTCTTCCTG................................................................................................................................................................................................................................................GTCCGAAATAAAGGAAGCTGGATGGAAATTGGCAACAGCATTAGCCATTTCGGAATTATGAGTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U597345" ref_strand="+" ref_description="SGN-U597345 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147807720|emb|CAN66553.1| (e_value=4e-55) hypothetical; (*ATH) AT5G02850.1 (e_value=6e-52) | Symbol: None | hydroxyproline-rich glycoprotein family protein | chr5:652108-653671 FORWARD | Aliases: F9G14.160, F9G14_160; ">
      <seq>ctcctctgtgttagggcagaaaaatctgaagctgattcctccattttcttccacaaacgaaagaatgttcaacaccaacttctgcaatcgccggcacggctaggcctgccaactcccagttcaccttctctacaaaacacaactcctcctactaagttctcctcgcaagcgtcgcaacccaatcaacaggcaaatatattaactaccactaccacctcatcaacgctccttcctcttctcccacctctctctagagctcagtctcttctcattcaaatggcgtctcttgcgtcaaggctctttgaagtctcacctaaccggtcccattggcttagtgcttttcgtggctctttcccttcatttctgccttctacagcaccagttccacaagattccagcccatcgtcctcaaaagaaatcctctcagcgtttacttctcttcagacacagctgtttgaagcagttgctgaactacaagaaatacttgatcttcaagatgagaagcaaaaagtcacccgtgaaattaggttaaatgattctgcaattcttgccttcgccaacaaactcaaaggagctgagcatgttcttgacaatcttgttgatgactatgctgactatcgtcgccccaaacgggccaagttggaaaacgatactgaagaatcttcattaacatctgtggcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="26139" stop="27952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26439" g_stop="26501" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26502" i_stop="27034" i_length="533">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.841" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27035" g_stop="27652" g_length="618"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="681" r_length="618" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-U597345" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U597345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26439" e_stop="26501"/>
          <exon e_start="27035" e_stop="27652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTCTGTGTTAGGGCAGAAAAATCTGAAGCTGATTCCTCCATTTTCTTCCACAAACGAAAGGTATACGCTCTATTATTTTTCTCCTTCCTTGTACGTTAACTCTATTTTCCCACTGTTTCCAGTTCGACATTTGTAGTTTCTTATCTCTGTTTGTTTCAGTTAAGTCCCAAATATATGATGGGTCATGCGATGCTTTCTGCATTTTGCGGTTGTTTTTTGGGATATATAGATGTTTATTACTTCTTTTATTTGCCTTTGAAATAAAATAATTTGTAATTTGATGGTAAAGATAAATACTCATTGTAATTTGTAAAACTTACAGATTCCATACATTGAATCTAATGCTTGTTTCTAGGAAATTGAATGTTGATACTGAAAAATTGCAAGTTCAGTGTCCATTAACTTTAAAGTTTGAATTTTTGAAGTATTTTCTCCTTTTTCGCATGTGTATGTATGCTTTTCCCTCGGATTGCTATTCTTACCATCGTTTAGTAATATGGTGATTCATGCCTAATGTTGTTTATTGATTTTATTTTATTTTTAACTTTTACCATTTCTAGTTTTTTCAATCGTGGTCTTTGAAGATGTTACAGAATGTTCAACACCAACTTCTGCAATCGCCGGCACGGCTAGGCCTGCCAACTCCCAGTTCACCTTCTCTACAAAACACAACTCCTCCTACTAAGTTCTCCTCGCAAGCGTCGCAACCCAATCAACAGGCAAATATATTAACTACCACTACCACCTCATCAACGCTCCTTCCTCTTCTCCCACCTCTCTCTAGAGCTCAGTCTCTTCTCATTCAAATGGCGTCTCTTGCGTCAAGGCTCTTTGAAGTCTCACCTAACCGGTCCCATTGGCTTAGTGCTTTTCGTGGCTCTTTCCCTTCATTTCTGCCTTCTACAGCACCAGTTCCACAAGATTCCAGCCCATCGTCCTCAAAAGAAATCCTCTCAGCGTTTACTTCTCTTCAGACACAGCTGTTTGAAGCAGTTGCTGAACTACAAGAAATACTTGATCTTCAAGATGAGAAGCAAAAAGTCACCCGTGAAATTAGGTTAAATGATTCTGCAATTCTTGCCTTCGCCAACAAACTCAAAGGAGCTGAGCATGTTCTTGACAATCTTGTTGATGACTATGCTGACTATCGTCGCCCCAAACGGGCCAAGTTGGAAAACGATACTGAAGAATCTTCATTAACATCTGTGGCG</genome_strand>
        <mrna_strand>CTCCTCTGTGTTAGGGCAGAAAAATCTGAAGCTGATTCCTCCATTTTCTTCCACAAACGAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTCAACACCAACTTCTGCAATCGCCGGCACGGCTAGGCCTGCCAACTCCCAGTTCACCTTCTCTACAAAACACAACTCCTCCTACTAAGTTCTCCTCGCAAGCGTCGCAACCCAATCAACAGGCAAATATATTAACTACCACTACCACCTCATCAACGCTCCTTCCTCTTCTCCCACCTCTCTCTAGAGCTCAGTCTCTTCTCATTCAAATGGCGTCTCTTGCGTCAAGGCTCTTTGAAGTCTCACCTAACCGGTCCCATTGGCTTAGTGCTTTTCGTGGCTCTTTCCCTTCATTTCTGCCTTCTACAGCACCAGTTCCACAAGATTCCAGCCCATCGTCCTCAAAAGAAATCCTCTCAGCGTTTACTTCTCTTCAGACACAGCTGTTTGAAGCAGTTGCTGAACTACAAGAAATACTTGATCTTCAAGATGAGAAGCAAAAAGTCACCCGTGAAATTAGGTTAAATGATTCTGCAATTCTTGCCTTCGCCAACAAACTCAAAGGAGCTGAGCATGTTCTTGACAATCTTGTTGATGACTATGCTGACTATCGTCGCCCCAAACGGGCCAAGTTGGAAAACGATACTGAAGAATCTTCATTAACATCTGTGGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U573799" ref_strand="+" ref_description="SGN-U573799 Tomato 200607#2 [14 ESTs aligned] (*GB) gi|147852950|emb|CAN81266.1| (e_value=3e-112) hypothetical; (*ATH) AT5G40150.1 (e_value=7e-96) | Symbol: None | peroxidase, putative, identical to peroxidase ATP26a {Arabidopsis thaliana} GP:1890317:emb:CAA72487 | chr5:16076737-16078271 REVERSE | Aliases: MSN9.50, MSN9_50; (*SWP) sp|Q9FL16|PER63_ARATH (e_value=6e-95) Peroxidase 63 OS=Arabidopsis thaliana GN=PER63; ">
      <seq>agaaaagcacttggacttatggaagaaaatgagagaggaacatgtttcattaaataaaaaataaaaacatatatcattgaatgaagagaagtgagaaatatgaagaccccattgaagccctccagctatttcccatcccccatttacctatttccctctcctttttttagccatttttttctattaactttcccttctcaaacactgagctgaaaaacagagcaaatgggtttaactcttctgctttttctttgcttctctgttatcttaactccttctttatcacagcaccattcgccgctaaatactgcttattaccggagatcatgtccaagatttgaacaaattatgcaagaaaccactacaaacaaacagatcacttcacctactaccgccgccgctaccctccgtctcttcttccacgactgcttcgtcggcggctgcgacgcgtccatcctcgtctcctccactcctttcaacaaagctgaacgtgacgcagaaatcaacctatcactccccggcgatgggttcgatgtagtcgtacgcgccaaaacggcgcttgaacttgcttgccccggcgttgtctcttgctccgacattctcgccgtcgctgcccggaatctcgttgttcaaaccggaggcccgttttatccagttaatttgggccgtaaagattcttttacttctaaagcttcgttggttgaaggaaatctgccccgacccacaatgtcgatggatcaaatcatacaaattttcgggtcaagagggttttcggtaccggaaatggtagcgttatccggtgctcacacaattgggttttcccattgtaaagagttcagctcaaatctttacaattacaacaaaacttcccaatatgatccttcttacaatcccagatttgctcaagctttgagaaatgcttgtaataatttccagaaagatccaacattgtccgttttcaacgacatcatgactccgaataagtttgacaacatgtattaccagaacttacccaagggtttgggtcctgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="33190" stop="34820"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33490" g_stop="34520" g_length="1031"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1032" r_length="1032" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-U573799" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1031</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U573799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33490" e_stop="34520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAGCACTTGGACTTATGGAAGAAAATGAGAGAGGAACATGTTTCATTAAATAAAAAATAAAAACATATATCATTGAATGAAGAGAAGTGAGAAATATGAAGACCCCATTGAAGCCCTCCAGCTATTTCCCATCCCCCATTTACCTATTTCCCTCTCCTTTTTTTAGCCATTTTTTTCTATTAACTTTCCCTTCTCAAACACTGAGCTGAAAAACAGAGCAAATGGGTTTAACTCTTCTGCTTTTTCTTTGCTTCTCTGTTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCTTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCTACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATCCTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTACTTCTAAAGCTTCGTTGGTTGAAGGAAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATACAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCGTTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCTTCTTACAATCCCAGATTTGCTCAAGCTTTGAGAAATGCTTGTAATAATTTCCAGAAAGATCCAACATTGTCCGTTTTCAACGACATCATGACTCCGAATAAGTTTGACAACATGTATTACCAGAACTTACCCAAGGGTTTGGGT-CTGTT</genome_strand>
        <mrna_strand>AGAAAAGCACTTGGACTTATGGAAGAAAATGAGAGAGGAACATGTTTCATTAAATAAAAAATAAAAACATATATCATTGAATGAAGAGAAGTGAGAAATATGAAGACCCCATTGAAGCCCTCCAGCTATTTCCCATCCCCCATTTACCTATTTCCCTCTCCTTTTTTTAGCCATTTTTTTCTATTAACTTTCCCTTCTCAAACACTGAGCTGAAAAACAGAGCAAATGGGTTTAACTCTTCTGCTTTTTCTTTGCTTCTCTGTTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCTTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCTACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATCCTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTACTTCTAAAGCTTCGTTGGTTGAAGGAAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATACAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCGTTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCTTCTTACAATCCCAGATTTGCTCAAGCTTTGAGAAATGCTTGTAATAATTTCCAGAAAGATCCAACATTGTCCGTTTTCAACGACATCATGACTCCGAATAAGTTTGACAACATGTATTACCAGAACTTACCCAAGGGTTTGGGTCCTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U573800" ref_strand="+" ref_description="SGN-U573800 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|147811771|emb|CAN68188.1| (e_value=6e-73) hypothetical; (*ATH) AT5G40150.1 (e_value=3e-70) | Symbol: None | peroxidase, putative, identical to peroxidase ATP26a {Arabidopsis thaliana} GP:1890317:emb:CAA72487 | chr5:16076737-16078271 REVERSE | Aliases: MSN9.50, MSN9_50; (*SWP) sp|Q9FL16|PER63_ARATH (e_value=3e-69) Peroxidase 63 OS=Arabidopsis thaliana GN=PER63; ">
      <seq>aaaataacctatcactccccggcgatgggttcgatgttctaccccaaaacgggcttgaacttgcttgccccggcgttgctcttgctccgacattctcgccgcctgccggaatctcgtgtcaaaccggaggcccgttatccagttaatttgggccgtaaagattcttttacttctaaagcttcgttggttgaagggaatctgccccgacccacaatgtcgatggatcaaatcattaaaattttcgggtcaagagggttttcggtaccggaaatggtagcattatccggtgctcacacaattgggttttcccattgtaaagagttcagctcaaatctttacaattacaacaaaacttcccaatatgatccttcttacaatcccagatttgctcaagctttgagaaatgcttgtaacaatttccagaaagatccaacattgtccgttttcaacgacatcatgactccgaataagtttgacaacatgtattaccagaacttacccaagggtttgggtctgttgtcttcggaccggggtctgttttcagatccgaggacaagagctcatgttgaagagtatattagagatcaaaatgcattctttaaggcgtttgcttcagcaatgcagaagctaagtgatcatggtgttaaaattgggagaagtggtgagatcagacacagatgtgatgctttcaacaattaaactatttgaggggtattgattatgttactgtacgttcgaattttttgttgaatttaatcactcacaagacgaaagtaaaacttataatatgtatacaatgttttttactatcatttttattaagattacaaggctctgcttcagttctgcttttagaacaactactactactactacttgtgattagtgtgtgttgagatgcaggtaagaggctgtttgttcgtcgaatttgattcaataagaaatgaaaccgtaaataaagtttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="33689" stop="35269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33989" g_stop="34969" g_length="981"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="967" r_length="967" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-U573800" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>981</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U573800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33989" e_stop="34969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTACTTCTAAAGCTTCGTTGGTTGAAGGAAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATACAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCGTTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCTTCTTACAATCCCAGATTTGCTCAAGCTTTGAGAAATGCTTGTAATAATTTCCAGAAAGATCCAACATTGTCCGTTTTCAACGACATCATGACTCCGAATAAGTTTGACAACATGTATTACCAGAACTTACCCAAGGGTTTGGGTCTGTTGTCTTCGGACCGGGGTCTGTTTTCAGATCCGAGGACAAGAGTTCATGTTGAAGAGTATATTAGAGATCAAAATGCATTCTTTAAGGCGTTTGCTTCAGCAATGCAGAAGCTAAGTGATCATGGTGTTAAAATTGGGAGAAGTGGTGAGATCAGACACAGATGTGATGCTTTCAACAATTAAACTATTTGAGGGGTATTGATTATGTTACTGTACGTTCGAATTTTTTGTTGAATTTAATCACTCACAAGACGAAAGTAAAACTTATAATATGTATACAATGTTTTTTACTATCATTTTTATTAAGATTACAAGGCTCTGCTTCAGTTCTGCTTTTAGAACAACTACTACTACTACTACTTGTGATTAGTGTGTGTTGAGATGCAGGTAAGAGGCTGTTTGTTCGTCGAATTTGATTCAATAAGAAATGAAACCGTAAATAAAGTTTGCT</genome_strand>
        <mrna_strand>AAAATAACCTATCACTCCCCGGCGATGGGTTCGATGT--TC-TAC-C-CCAAAACGG-GCTTGAACTTGCTTGCCCCGGCGTTG-CTCTTGCTCCGACATTCTCGCCG-C-CTG-CCGGAATCTCG-TG-TCAAACCGGAGGCCCG--TTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTACTTCTAAAGCTTCGTTGGTTGAAGGGAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATTAAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCATTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCTTCTTACAATCCCAGATTTGCTCAAGCTTTGAGAAATGCTTGTAACAATTTCCAGAAAGATCCAACATTGTCCGTTTTCAACGACATCATGACTCCGAATAAGTTTGACAACATGTATTACCAGAACTTACCCAAGGGTTTGGGTCTGTTGTCTTCGGACCGGGGTCTGTTTTCAGATCCGAGGACAAGAGCTCATGTTGAAGAGTATATTAGAGATCAAAATGCATTCTTTAAGGCGTTTGCTTCAGCAATGCAGAAGCTAAGTGATCATGGTGTTAAAATTGGGAGAAGTGGTGAGATCAGACACAGATGTGATGCTTTCAACAATTAAACTATTTGAGGGGTATTGATTATGTTACTGTACGTTCGAATTTTTTGTTGAATTTAATCACTCACAAGACGAAAGTAAAACTTATAATATGTATACAATGTTTTTTACTATCATTTTTATTAAGATTACAAGGCTCTGCTTCAGTTCTGCTTTTAGAACAACTACTACTACTACTACTTGTGATTAGTGTGTGTTGAGATGCAGGTAAGAGGCTGTTTGTTCGTCGAATTTGATTCAATAAGAAATGAAACCGTAAATAAAGTTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U577105" ref_strand="+" ref_description="SGN-U577105 Tomato 200607#2 [2 ESTs aligned] ">
      <seq>caatcgaaccaagtaattgaaacgaaaaaaatgacaatacaatctgtaatgaaaaatctttcaaaattgttggcatgtaaaagtcagcattaaggaaataaaagagaatggaagggctaagcagggttcaaaagttatacattaacttatcccagngtaaaaatacttgagcaattgtagctattgctcatgcactaaaagtccagngtaaaaattttagngcanaaattgtaaccttcccagtagcaccacacatcacatcaaagtaaagattgtgtcaatggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="35346" stop="36230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35646" g_stop="35930" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-U577105" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>285</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U577105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35646" e_stop="35930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCGAACCAAGTAATTGAAACGAAAAAAATGACAATACAATCTGTAATGAAAAATCTTTCAAAATTGTTGGCATGTAAAAGTCAGCATTAAGGAAATAAAAGAGAATGGAAGGGCTAAGCAGGGTTCAGAAGTTATACATTAACTTATCCCAGTGTAAAAATACTTGAGCAATTGTAGCTATTGCTCATGCACTAAAAGTCCAGTGTAAAAATTTTAGTGCAGAAATTGTAACCTTCCCAGTAGCACCACACATCACATCAGAGTAAAGATTGTGTCAATGGT</genome_strand>
        <mrna_strand>CAATCGAACCAAGTAATTGAAACGAAAAAAATGACAATACAATCTGTAATGAAAAATCTTTCAAAATTGTTGGCATGTAAAAGTCAGCATTAAGGAAATAAAAGAGAATGGAAGGGCTAAGCAGGGTTCAAAAGTTATACATTAACTTATCCCAGNGTAAAAATACTTGAGCAATTGTAGCTATTGCTCATGCACTAAAAGTCCAGNGTAAAAATTTTAGNGCANAAATTGTAACCTTCCCAGTAGCACCACACATCACATCAAAGTAAAGATTGTGTCAATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U568033" ref_strand="+" ref_description="SGN-U568033 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157345534|emb|CAO14832.1| (e_value=4e-67) unnamed; (*ATH) AT5G40140.1 (e_value=7e-66)  Symbol: None | armadillo/beta-catenin repeat family protein / U-box domain-containing protein, contains Pfam domain, PF00514: Armadillo/beta-catenin-like repeats and Pfam, PF04564: U-box domain | chr5:16074575-16076227 FORWARD | Aliases: MSN9.4, MSN... ; (*SWP) sp|Q9FL17|PUB40_ARATH (e_value=6e-65) U-box domain-containing protein 40 OS=Arabidopsis thaliana GN=PUB40; ">
      <seq>catcacatctttttttatagattgtgtcaatggtacactctcttcattcttgctttcactgtttgagcatcaagatgctcaaaaatgaaaaacaactctggagttcattgcatttgctctgcagcaatgtttattgcaatgcagaccttaaagaaacatgagaataacaattctctaacaacttccgcagttgcagcaatcaatcaactccagcataaataccaaattactagacagcggcttgtggaagccacgaacagtgcatagaataagcctcaggcacacaagaaagtgaaaatcgcattgcttgaagagtattaggagacaatgagttcatgttaaagacagcctcttttctccaaaaactaaaacacactgttcagaatctttctttacacctccaacattatttaccatgtcaactgtcacatgacctcagaagacacgacgagcaaaaccaaaaccaaaatcatgctatccgaagctatgcaaagagaaaaccgtgcctaattacaagccatttctcagaaaaaggaatgaaatagcatacagtgaagaaacagaaacaaacaagagctatgaagaacttatccgtgcttgactgatatcatcatccgaattaagcaacttctcccaatcaacttcctcctcttcatccttctgcctcaaaacctccaatatctttctaactttatccttggccctttcacttcccatttcctcaacttgtatcaacagctcctccgcagcagcctcttttgccaaccctttaaacctaaggccaccatgactaagtccatataatgcagcaagacaattctcacgagtcgactccgattcaaactctccctttctcaacatacatacaaaacactccactgcacccccatcaagcattgctgctctcccttcagagctcgcagccaggttacaaagtatcaacagaatccgacccatcatatgacccgttttaaccatgcctagtaatgcctgaaccgccccgagtttcaccaatttagccctgttactctgaactaaagtgaggtgatatagagccagagccgaatcatgcctagttcgttccgattcagatcgaagggcatgaagaagtggaggcagagctcctaataccccaattgcagttttgttctgatcatctaacgctaaactgaaaagtgcaccagcaacatgttcctgtgattcttgggatccactttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="35612" stop="37414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35912" g_stop="37114" g_length="1203"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="1218" r_length="1203" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-U568033" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1203</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U568033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35912" e_stop="37114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGATTGTGTCAATGGTACACTCTCTTCATTCTTGCTTTCACTGTTTGAGCATCAAGATGCTCAAAAATGAAAAACAACTCTGGAGTTCATTGCATTTGCTCTGCAGCAATGTTTATTGCAATGCAGACCTTAAAGAAACATGAGAATAACAATTCTCTAACAACTTCCGCAGTTGCAGCAATCAATCAACTCCAGCATAAATACCAAATTACTAGACAGCGGCTTGTGGAAGCCACGAACAGTGCATAGAATAAGCCTCAGGCACACAAGAAAGTGAAAATAGCATTGCTTGAAGAGTATTAGGAGACAATGAGTTCATGTTAAAGACAGCCTCTTTTCTCCAAAAACTAAAACACACTGTTCAGAATCTTTCTTTACACCTCCAACATTATTTACCATGTCAACTGTCACATGACCTCAGAAGACACGACGAGCAAAACCAAAACCAAAATCATGCTATCCGAAGCTATGCAAAGAGAAAACCGTGCCTAATTACAAGCCATTTCTCAGAAAAAGGAATGAAATAGCATACAGTGAAGAAACAGAAACAAACAAGAGCTATGAAGAACTTATCCGTGCTTGACTGATATCATCATCCGAATTAAGCAACTTCTCCCAATCAACTTCCTCCTCTTCATCCTTCTGCCTCAAAACCTCCAATATCTTTCTAACTTTATCCTTGGCCCTTTCACTTCCCATTTCCTCAACTTGTATCAACAGCTCCTCCGCAGCAGCCTCTTTTGCCAACCCTTTAAACCTAAGGCCACCATGACTAAGTCCATATAATGCAGCAAGACAATTCTCACGAGTCGACTCCGATTCAAACTCTCCCTTTCTCAACATACATACAAAACACTCCACTGCACCCCCATCAAGCATTGCTGCTCTCCCTTCAGAGCTCGCAGCCAGGTTACAAAGTATCAACAGAATCCGACCCATCATATGACCCGTTTTAACCATGCCTAGTAATGCCTGAACCGCCCCGAGTTTCACCAATTTAGCCCTGTTACTCTGAACTAAAGTGAGGTGATATAGAGCCAGAGCCGAATCATGCCTAGTTCGTTCCGATTCAGATCGAAGGGCATGAAGAAGTGGAGGCAGAGCTCCTAATACCCCAATTGCAGTTTTGTTCTGATCATCTAACGCTAAACTGAAAAGTGCACCAGCAACATGTTCCTGTGATTCTTGGAATCCACTTTT</genome_strand>
        <mrna_strand>TATAGATTGTGTCAATGGTACACTCTCTTCATTCTTGCTTTCACTGTTTGAGCATCAAGATGCTCAAAAATGAAAAACAACTCTGGAGTTCATTGCATTTGCTCTGCAGCAATGTTTATTGCAATGCAGACCTTAAAGAAACATGAGAATAACAATTCTCTAACAACTTCCGCAGTTGCAGCAATCAATCAACTCCAGCATAAATACCAAATTACTAGACAGCGGCTTGTGGAAGCCACGAACAGTGCATAGAATAAGCCTCAGGCACACAAGAAAGTGAAAATCGCATTGCTTGAAGAGTATTAGGAGACAATGAGTTCATGTTAAAGACAGCCTCTTTTCTCCAAAAACTAAAACACACTGTTCAGAATCTTTCTTTACACCTCCAACATTATTTACCATGTCAACTGTCACATGACCTCAGAAGACACGACGAGCAAAACCAAAACCAAAATCATGCTATCCGAAGCTATGCAAAGAGAAAACCGTGCCTAATTACAAGCCATTTCTCAGAAAAAGGAATGAAATAGCATACAGTGAAGAAACAGAAACAAACAAGAGCTATGAAGAACTTATCCGTGCTTGACTGATATCATCATCCGAATTAAGCAACTTCTCCCAATCAACTTCCTCCTCTTCATCCTTCTGCCTCAAAACCTCCAATATCTTTCTAACTTTATCCTTGGCCCTTTCACTTCCCATTTCCTCAACTTGTATCAACAGCTCCTCCGCAGCAGCCTCTTTTGCCAACCCTTTAAACCTAAGGCCACCATGACTAAGTCCATATAATGCAGCAAGACAATTCTCACGAGTCGACTCCGATTCAAACTCTCCCTTTCTCAACATACATACAAAACACTCCACTGCACCCCCATCAAGCATTGCTGCTCTCCCTTCAGAGCTCGCAGCCAGGTTACAAAGTATCAACAGAATCCGACCCATCATATGACCCGTTTTAACCATGCCTAGTAATGCCTGAACCGCCCCGAGTTTCACCAATTTAGCCCTGTTACTCTGAACTAAAGTGAGGTGATATAGAGCCAGAGCCGAATCATGCCTAGTTCGTTCCGATTCAGATCGAAGGGCATGAAGAAGTGGAGGCAGAGCTCCTAATACCCCAATTGCAGTTTTGTTCTGATCATCTAACGCTAAACTGAAAAGTGCACCAGCAACATGTTCCTGTGATTCTTGGGATCCACTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U581762" ref_strand="+" ref_description="SGN-U581762 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|147852951|emb|CAN81267.1| (e_value=2e-72) hypothetical; (*ATH) AT5G40140.1 (e_value=8e-64)  Symbol: None | armadillo/beta-catenin repeat family protein / U-box domain-containing protein, contains Pfam domain, PF00514: Armadillo/beta-catenin-like repeats and Pfam, PF04564: U-box domain | chr5:16074575-16076227 FORWARD | Aliases: MSN9.4, MSN... ; (*SWP) sp|Q9FL17|PUB40_ARATH (e_value=7e-63) U-box domain-containing protein 40 OS=Arabidopsis thaliana GN=PUB40; ">
      <seq>gcgagtacagagctctcagtactaaacatccaattttctgtttcactatcagcttcctctctccaaatctcagtctgtcataatgaagatgtacacttttgctcatctcctcaacaggctcaaagttgaatttttgaaaccttttgttttcattcatatttgaacctcaaagattgaatcttgaaacttctttttttttttcttcattgaaatgggtacaagcaagcaaagatggagaatttcatttcacaagtctccatcaaaacaacctcctattcctatagaatttgtctgtcctatttctggttctctcatggctgaccctgtaatcgtttcttcaggccatacttttgagcgtcattgtgttcatgcctgcaaatcactttcttttacccctgttcttcctgatggctctgttcctgatttctctactgtgatccctaacttagctctcaagtctacaatcctcaatttttgccgttcttcttttcttgacccaccaaaacccatcaattttctcacagctgaaaatctcgttttcacattgaaggccacccgaaaaccccaagatgctacaagatttaatggcgtccgggttatgcagacggaaactgaactgaaccgggtaccgagtcacatatcaatgagttcagaggaatctgtgactcctagaagtggacccacttattactcttcgtcgtcagcctctgactttgaaaccctaaacccaaattcctttgaagaagatgaactacttgtgaaattgaagagttcccaaatatctgaacaagaagaagctgtcatctcgtttcgaaaattgacccgaacccgtgaagaaacccggttccagttatgcactccgcgtatactttcagctctacgtgtactcatcacttcaaggtatgtttctgtacaagtaaattcagtagcggcattggtaaatttgtcgttagagaatcgaaacaaggtgaaaatttttacggtctggaattgttccgtcctttattgacgtgttgaaaagtggattccaagaatcacaggaacatgttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="38428" stop="36779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38129" g_stop="37079" g_length="1051"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1052" r_length="1052" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-U581762" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1051</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U581762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38129" e_stop="37079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAGTACAGAGCTCTCAGTACTAAACATCCAATTTTCTGTTTCACTATCAGCTTCCTCTCTCCAAATCTCAGTCTGTCATAATGAAGATGTACACTTTTGCTCATCTCCTCAACAGGCTCAAAGTTGAATTTTTGAAACCTTTTGTTTTCATTCATATTTGAACCTCAAAGATTGAATCTTGAAACTTCTTTTTTTTTTTCTTCATTGAAATGGGTACTAGCAAGCAAAGATGGAGAATTTCATTTCACAAGTCTCCATCAAAACAACCTCCTATTCCTATAGAATTTGTCTGTCCTATTTCTGGTTCTCTCATGGCTGACCCTGTAATCGTTTCTTCAGGCCATACTTTTGAGCGTCATTGTGTTCATGCCTGCAAATCACTTTCTTTTACCCCTGTTCTTCCTGATGGCTCTGTTCCTGATTTCTCTACTGTGATCCCTAACTTAGCTCTCAAGTCTACAATCCTCAATTTTTGCCGTTCTTCTTTTCTTGACCCACCAAAACCCATCAATTTTCTCACAGCTGAAAATCTCGTTTTCACATTGAAGGCCACCCGAAAACCCCAAGATGCTACAAGATTTAATGGCGTCCGGGTTATGCAGACGGAAACTGAACTGAACCGGGTACCGAGTCACATATCAATGAGTTCAGAGGAATCTGTGACTCCTAGAAGTGGACCCACTTATTACTCTTCGTCGTCAGCCTCTGACTTTGAAACCCTAAACCCAAATTCCTTTGAAGAAGATGAACTACTTGTGAAATTGAAGAGTTCCCAAATATCTGAACAAGAAGAAGCTGTCATCTCGTTTCGAAAATTGACCCGAACCCGTGAAGAAACCCGGTTCCAGTTATGCACTCCGCGTATACTTTCAGCTCTACGTGTACTCATCACTTCAAGGTATGTTTCTGTACAAGTAAATTCAGTAGCGGCATTGGTAAATTTGTCGTTAGAGAATCGAAACAAGGTGAAAA-TTTTACGGTCTGGAATTGTTCCGTCTTTGATTGACGTGTTGAAAAGTGGATTCCAAGAATCACAGGAACATGTTGCT</genome_strand>
        <mrna_strand>GCGAGTACAGAGCTCTCAGTACTAAACATCCAATTTTCTGTTTCACTATCAGCTTCCTCTCTCCAAATCTCAGTCTGTCATAATGAAGATGTACACTTTTGCTCATCTCCTCAACAGGCTCAAAGTTGAATTTTTGAAACCTTTTGTTTTCATTCATATTTGAACCTCAAAGATTGAATCTTGAAACTTCTTTTTTTTTTTCTTCATTGAAATGGGTACAAGCAAGCAAAGATGGAGAATTTCATTTCACAAGTCTCCATCAAAACAACCTCCTATTCCTATAGAATTTGTCTGTCCTATTTCTGGTTCTCTCATGGCTGACCCTGTAATCGTTTCTTCAGGCCATACTTTTGAGCGTCATTGTGTTCATGCCTGCAAATCACTTTCTTTTACCCCTGTTCTTCCTGATGGCTCTGTTCCTGATTTCTCTACTGTGATCCCTAACTTAGCTCTCAAGTCTACAATCCTCAATTTTTGCCGTTCTTCTTTTCTTGACCCACCAAAACCCATCAATTTTCTCACAGCTGAAAATCTCGTTTTCACATTGAAGGCCACCCGAAAACCCCAAGATGCTACAAGATTTAATGGCGTCCGGGTTATGCAGACGGAAACTGAACTGAACCGGGTACCGAGTCACATATCAATGAGTTCAGAGGAATCTGTGACTCCTAGAAGTGGACCCACTTATTACTCTTCGTCGTCAGCCTCTGACTTTGAAACCCTAAACCCAAATTCCTTTGAAGAAGATGAACTACTTGTGAAATTGAAGAGTTCCCAAATATCTGAACAAGAAGAAGCTGTCATCTCGTTTCGAAAATTGACCCGAACCCGTGAAGAAACCCGGTTCCAGTTATGCACTCCGCGTATACTTTCAGCTCTACGTGTACTCATCACTTCAAGGTATGTTTCTGTACAAGTAAATTCAGTAGCGGCATTGGTAAATTTGTCGTTAGAGAATCGAAACAAGGTGAAAATTTTTACGGTCTGGAATTGTTCCGTCCTTTATTGACGTGTTGAAAAGTGGATTCCAAGAATCACAGGAACATGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U585267" ref_strand="+" ref_description="SGN-U585267 Tomato 200607#2 [21 ESTs aligned] (*GB) gi|147852952|emb|CAN81268.1| (e_value=3e-46) hypothetical; (*ATH) AT3G28210.1 (e_value=1e-44) | Symbol: None | zinc finger (AN1-like) family protein, contains Pfam profile: PF01428 AN1-like zinc finger | chr3:10521758-10522769 FORWARD | Aliases: T19D11.2; (*SWP) sp|Q67YE6|SAP12_ARATH (e_value=1e-43) Zinc finger AN1 domain-containing stress-associated protein 12 OS=Arabidopsis thaliana GN=SAP12; ">
      <seq>cggccgggggaggcaactagaaaaacaaaaatacacgaaagaagaaaatggaaggaggaacagaagcctatccagatttaggtagacattgccaactatctgattgccatcaactcgattttctcccttttacctgccatgcctgtttaaaggtattttgtgtggaacatagatcatgcaagtctcatgaatgcccaaaatctgactttaacagccgaatcgttttggtttgcgaaatttgttctatgtccatggaaactaccggctgtaaagttgaagaccacaaagcaatattacaaaaacacgaggaatctggggattgtgaccctaagaagaagaagaagaaacctacctgtcctgtcaaaagatgcaaggggattttgaccttctcaaacactagcacttgcaagatatgccggattcaagtttgcctcagacacaggttccctgctgatcacgcctgtaaccccacttcttcatcatcacagctgttgctaaaggaacccaataacaagtttttgactgctttgcttgcaaggaatgggaaagattgtgggaataaaagtcgtgcctcatctccaagccctgcgaacccttctgtgaaagcttgttgatcgtttcacagcacattactattcatttgtcttttgtaattacattattttatggaaaacaatgttgttctattttcaatttctccctcccttctatgataaaacaacgaatttaagaatgacataacaattcgggaatcaaaaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="42965" stop="44419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43267" g_stop="43406" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="152" r_length="140" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43407" i_stop="43512" i_length="106">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43513" g_stop="44122" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="763" r_length="611" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-U585267" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U585267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43267" e_stop="43406"/>
          <exon e_start="43513" e_stop="44122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAACTAGAAGAACAAAAATACACGAAAGAAGAAAATGGAAGGAGGAACAGAAGCCTATCCAGATTTAGGTAGACATTGCCAACTATCTGATTGCCATCAACTCGATTTTCTCCCTTTTACCTGCCATGCCTGTTTAAAGGTTTGCCACTTTTATCCGTCCACCTTCACTTTGCGATTTTGCTTTTGGACATACACTACTGTATAAAATATTCAAAGGTTTTGATAATCATTGTTGCGATGTGCAGGTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGCTGTTGCTAAAGGAACCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGAATGGGAAAGATTGTGGGAATAAAAGTCGTGCCTCATCTCCAAGCCCTGCGAACCCTTCTGTGAAAGCTTGTTGATCGTTTCACAGCACATTACTATTCATTTGTCTTTTGTAATTACATTATTTTATGGAAAACAATGTTGTTCTATTTTCAATTTCTCCCTCCCTTCTATGATAAAACAACGAATTTAAGAATGACATAACAATTC-GGAATCATATAATCT</genome_strand>
        <mrna_strand>GCAACTAGAAAAACAAAAATACACGAAAGAAGAAAATGGAAGGAGGAACAGAAGCCTATCCAGATTTAGGTAGACATTGCCAACTATCTGATTGCCATCAACTCGATTTTCTCCCTTTTACCTGCCATGCCTGTTTAAAG..........................................................................................................GTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGCTGTTGCTAAAGGAACCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGAATGGGAAAGATTGTGGGAATAAAAGTCGTGCCTCATCTCCAAGCCCTGCGAACCCTTCTGTGAAAGCTTGTTGATCGTTTCACAGCACATTACTATTCATTTGTCTTTTGTAATTACATTATTTTATGGAAAACAATGTTGTTCTATTTTCAATTTCTCCCTCCCTTCTATGATAAAACAACGAATTTAAGAATGACATAACAATTCGGGAATCAAAAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U581972" ref_strand="+" ref_description="SGN-U581972 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|147852953|emb|CAN81269.1| (e_value=2e-53) hypothetical; (*ATH) AT1G70180.2 (e_value=4e-16) | Symbol: None | sterile alpha motif (SAM) domain-containing protein, contains Pfam profile PF00536: SAM domain (Sterile alpha motif) | chr1:26430109-26433024 FORWARD | Aliases: None; ">
      <seq>gacgtgtcatggagaccagtagacaaaataaatgaggaaaaagaggagggacaattcttatagcgaccttgctcgctgagttttggagtatagacatatggagtataaccagatttagctgtgcataagttttgaccatctcaaatgtcaaggccacaggtcaccatcactttgggacgctcgggtcaagtaagctttctccactgtttttccagatttagctgtgcataagttttgaccatctcaaatgtcaaggccacaggtcaccatcactttgggacgctcgggtcaaaaagtggttaagcgatcatcagcttctcagggtaatggttttagtcaacagacattgtcaagaggcaaaaggtcattaggagagacctataggactgactctgaggatcctacaaaatcccttcgtaaacgtgtgcgaggggataaagatgcaggaggttccagatatggcagacagaatggtgcacgcattgggaaaaatgacctccgactgaaactaatgcacagaagaaggcaaagggaaattcatctgcagattgaagaaagaaaaaaggagcagcataagaggatgacaagaagtgttcaatctgcagaacaatctcacaagaggcttgtcaccagcagccaaccgtcgtcaggagctagcgaattgcttcagatagaggcaattagatcctcctatacatcacaaactgctgctggtgttagatcaagatccccttatagacttgcaaacgattctaaagaagtctcttcttcaaggaatatcactgcagctcagcatgtaccgtcagtaaggccagccgaagcttcaagaatggttcatatggcaggatatgacctcatcgactcttctcagctaaaagtccttacccctgtgaccatgaggtcagcactgggtgccaggaatccattgacaggtcttccctctgcaaatggaggcatgctacacagaccatatcctgatcaacctcctttgaccgttgccagtctattaaattcgctcggtttggggaaatacactatccactttcaagccgaggaggtagacatggctgcactgaagcaaatgggggaccgtgacctgaaggaattggggataccaatgggacccaggaagaagattctcttggctatgctttcccaaacttagaagacctgtgtagtatggtagttatatttattcaattcaatgctcctgtttctaagctgaagttatcaagctggctgttcttgggaaatgtatataaagggtagcggtataatgctggagtatttggctgatatttgttgtataatagacagtatataacagtgaaattatctctttcgtttttgggagaggctgatctttttgtgaatttattttagagaactgttcaacatgagatgcggtttgaagttattcatatagagaagattatatgattccgaattgttatgtcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="48416" stop="43790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48116" g_stop="48005" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48004" i_stop="47910" i_length="95">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47909" g_stop="47604" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="423" r_length="311" r_score="0.837"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47603" i_stop="47448" i_length="156">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47447" g_stop="47398" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="473" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47397" i_stop="47278" i_length="120">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47277" g_stop="46775" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="976" r_length="503" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46774" i_stop="45952" i_length="823">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45951" g_stop="45871" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="977" r_stop="1057" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45870" i_stop="44735" i_length="1136">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44734" g_stop="44672" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1058" r_stop="1120" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="44671" i_stop="44432" i_length="240">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="44431" g_stop="44090" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1121" r_stop="1462" r_length="342" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-U581972" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>1457</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U581972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48116" e_stop="48005"/>
          <exon e_start="47909" e_stop="47604"/>
          <exon e_start="47447" e_stop="47398"/>
          <exon e_start="47277" e_stop="46775"/>
          <exon e_start="45951" e_stop="45871"/>
          <exon e_start="44734" e_stop="44672"/>
          <exon e_start="44431" e_stop="44090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGTGTCATGGAGACCAGTAGACAAAATAAATGAGGAAAAAGAGGAGGGACAATTCTTATAGCGACCTTGCTCGCTGAGTTTTGGAGTATAGACATATGGAGTATAACCAGGTAGGTATCTCATTCTCTTTCACCTCCCATTTTTTAGGGTTCCTTCATTTCTATTGACTATCGATTGTTGCATCTTGTTGCTGCAATCCTTTCAGATTTAGCTGTGCATAAGTTTTGACCATCTCAAATGTCAAGGCCACAGGTCACCATCACTTTGGGACGCTCGGGTCAAGTAAGCTTTCTCCACTGTTTTT-C-GCTTTA--TG-G-ATCTGTTTGGAGGTTTCTTAATTGT-GGGTTCA-ATTTTTTC-TTAATTTGTTACTGTTAAACTTGCAGAAAGTGGTTAAGCGATCATCAGCTTCTCAGGGTAATGGTTTTAGTCAACAGACATTGTCAAGAGGCAAAAGGTCATTAGGAGAGACCTATAGGACTGACTCTGAGGATCCTACAAAATCCCTTCGTAAACGGTAAAATCTTTTGTTTGTTGTTCTGGTTGAGCTAATGTAGGTTGTATCTAATTTATTGTTTTCAGAATAATGGAAGGAATATAAAAAAACTATCAAAGTTAGAGTGGTAGTTTTGATTTTATTTGATAGTGGAAGTTTTGCTATTGTTTTTGCAAGTGTGCGAGGGGATAAAGATGCAGGAGGTTCCAGATATGGCAGACAGAATGGTATTATCTGAAATATTTGTCATTACATGTTGTTTTGTTTTTTGGATGATTCCAGTTTCCTGTGTCATTCTTTGGTCTAGCATATTAGCTCATGTTTGGTACTGTTACTGTGATGTAAAGGTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAAGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGCTGGTGTTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGCAGGATATGACCTCATCGACTCTTCTCAGCTAAAAGTCCTTACCCCTGTGACCATGAGGTCAGCACTGGGTGCCAGGAATCCATTGACAGGTCTTCCCTCTGCAAATGGAGGCATGCTACACAGACCATATCCTGTACGAACCTACTTATTGTTCATCTTACTGAATTTCTATCTTGAATCATTGCTGGTAGAATTCTTGTCTTATCTTGAACTGGATAACTGAAGTAGGTATTTTATGTGACATTCAAGATCATGAGCTCGGCTGTAACCTCTTTAGTATTTTATGTGACACTCAAGATCATGAGCTCGGCTGTAACCTCTTTAGTTGTTCTCCTTCTGGGGAACAACACAGACAGTGTTACTTAAACTAGCAGATCAGTTTTTACTCGAGATAGTTTTTCTGGCTCTACTCCACCCTGACATGCTTCCTGCTATTTTTTGTCAAGCCAAATTGTTGCCTATATTTTCTCTGTATGCTGGACTTTAGCACTGCTTATATTTAAAATGACAGATTGCTGATGGAAGTTAAATTACTATGGCATTGTTTGACCATGTTCAAGAATTGCCTTGGTTGCTAATGCTCATTGGAAATTTCTTTTGTCTGCGTTGTTTTACTATTATCTGTGTGATTTTCCTACAATTTTTTCTATTTCTCCTTCCTGCAACATAGCATTCTTTGCATTCCTTTGAATGATATTGAAATTTCAGGGAGTTATATTGAAAACTTTTATGTTTATTCATATGTCAATATTTCTGCATTGCTTGTCAACAAAGTCCAAATTAGTTGTTAGTTCTCACAATTAATGTCTTTCTCATAACACCATCTTTTCTTAGCTACTATGGATTTTTGTCTCATTTCCCTTTATGCCTGGTATGAAGGAGAAGGGAAGAAATATTTGTAAATGGACAGAATTTATATGAATATCTTAAACATTGTTCTATCTGGTGTTGTACAGGATCAACCTCCTTTGACCGTTGCCAGTCTATTAAATTCGCTCGGTTTGGGGAAATACACTATCCACTTTCAAGCCGAGGAGGTGAATAGTACTATTGTTAAATGATGAAGCACATGTTTTAGTTTTTATATCGTTTCTTTGTTATTACATTATCTCAGCATTATGAGCATTTTAAATATCAATTCTGGTACTGTGGCTGAAAAAGTCTCAAGGCTGAACTAGATTTCACTGCAAAAAGTAACAAGGTCATGGCATGTAGTTTCATGTTGAATAGAGAACCTTCTCGTCTTCACAATAAAAGGATTATTTTTTATGAGGAGCAAGATAAAATGGTACTTAATATTCTGCATTAAATCTTTTCTCCTGGTGTACTTGATTCCTATTGCACACATATATACAGTTAGCAGGCTGCTCATTATTTAGAGAAGTACCTTCTGTTATGTGGTGCGGTGGCGGAGGAGCCAGGAATTCAAAGAAAGTTCTTTTGCCATAGAGATTCAACAGCTCAAATATATACAAAAAAATGGTTCTTCCCTATCTACAGTGTAGTTTTTCAATGGAGGGGGTTCAATTGATTCCCCTTGCACCCTGGTGTGATGAATATGTTATGTGACAAATCTTCTAATAGTTGGTTAGATTTACGTGTTCGAACCCAAATCAATCTTTGAAGTTTCTTCGTTTGTCTGCATCACAAATTAATTATGTCACATGTTACTTATCCCATGACATTTCCTATTTAGTCCATTTGATCTACCTCTTTGTCTGTCCTCCCAACTAATCAACTTGTTAATAGATACATTACGGGCCTTTCAAATTCTTTACATAAATGTCTTTTGTTGTTTATAATGCCTCCTGAGGTATTATTTGTCACCTCGAAGCCCTTCATCTCTTCTGTTGTCCTCCTGTCTGATCATGTGCTCATCTTGGACTTCTAATATGAGATTATTACTTGTGTAAAGGATAGTAGCCTCACTGCTGTTCACAAATTGAAAGTTGCACCATTGGCCCATAACATTCTCAATCATCCTGTATTTTCCCCATCCATGTCCTTAGTGACACGGTTCAACTGAATAATCAGCCCATCTCTTTTATCTGTTTGTTCACGTGCCTCGCTTAATGTTTTTGATTAAGTGATTTAGTTAACTTTGCCAAGAACCTGAGATATCCTAGTTCAACTCCTTTCTTTAGTGATGTGATGCCTGTTTTACCCATTTCAGGTAGACATGGCTGCACTGAAGCAAATGGGGGACCGTGACCTGAAGGAATTGGGGATACCAATGGTACGTGTTGTTTCAGTCACCTTATTTGGAGGATCACACTGTTCACAAATTCTACTGCAAGTTCATATATGCTAATTTTGCTATGCATGGTGACACCTATTCACTTCCCTGAAAATAATGGGATATTATCTCGTTGGGGTGGGAAGAAGGCTAAGCTTCTCTTGATTATACTGAACTGTTGGATAGTTGCTACGCTTGTCCCATTTTAGCCTCTAATTGTTGCATTCTGGGGATTTGCAGGGACCCAGGAAGAAGATTCTCTTGGCTATGCTTTCCCAAACTTAGAAGACCTGTGTAGTATGGTAGTTATATTTATTCAATTCAATGCTCCTGTTTCTAAGCTGAAGTTATCAAGCTGGCTGTTCTTGGGAAATGTATATAAAGGGTAGCGGTATAATGCTGGAGTATTTGGCTGATATTTGTTGTATAATAGACAGTATATAACAGTGAAATTATCTCTTTCGTTTTTGGGAGAGGCTGATCTTTTTGTGAATTTATTTTAGAGAACTGTTCAACATGAGATGCGGTTTGAAGTTATTCATATAGAGAAGATTATATGATTCCGAATTGTTATGTCATTCT</genome_strand>
        <mrna_strand>GACGTGTCATGGAGACCAGTAGACAAAATAAATGAGGAAAAAGAGGAGGGACAATTCTTATAGCGACCTTGCTCGCTGAGTTTTGGAGTATAGACATATGGAGTATAACCAG...............................................................................................ATTTAGCTGTGCATAAGTTTTGACCATCTCAAATGTCAAGGCCACAGGTCACCATCACTTTGGGACGCTCGGGTCAAGTAAGCTTTCTCCACTGTTTTTCCAGATTTAGCTGTGCATAAGTTTTGA-CCATCTCAAATGTCAAGGCCACAGGTCACCATCACTTTGGGAC-GCT-CGGGT-CAAAAAGTGGTTAAGCGATCATCAGCTTCTCAGGGTAATGGTTTTAGTCAACAGACATTGTCAAGAGGCAAAAGGTCATTAGGAGAGACCTATAGGACTGACTCTGAGGATCCTACAAAATCCCTTCGTAAACG............................................................................................................................................................TGTGCGAGGGGATAAAGATGCAGGAGGTTCCAGATATGGCAGACAGAATG........................................................................................................................GTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAAGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGCTGGTGTTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGCAGGATATGACCTCATCGACTCTTCTCAGCTAAAAGTCCTTACCCCTGTGACCATGAGGTCAGCACTGGGTGCCAGGAATCCATTGACAGGTCTTCCCTCTGCAAATGGAGGCATGCTACACAGACCATATCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAACCTCCTTTGACCGTTGCCAGTCTATTAAATTCGCTCGGTTTGGGGAAATACACTATCCACTTTCAAGCCGAGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGACATGGCTGCACTGAAGCAAATGGGGGACCGTGACCTGAAGGAATTGGGGATACCAATG................................................................................................................................................................................................................................................GGACCCAGGAAGAAGATTCTCTTGGCTATGCTTTCCCAAACTTAGAAGACCTGTGTAGTATGGTAGTTATATTTATTCAATTCAATGCTCCTGTTTCTAAGCTGAAGTTATCAAGCTGGCTGTTCTTGGGAAATGTATATAAAGGGTAGCGGTATAATGCTGGAGTATTTGGCTGATATTTGTTGTATAATAGACAGTATATAACAGTGAAATTATCTCTTTCGTTTTTGGGAGAGGCTGATCTTTTTGTGAATTTATTTTAGAGAACTGTTCAACATGAGATGCGGTTTGAAGTTATTCATATAGAGAAGATTATATGATTCCGAATTGTTATGTCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U581973" ref_strand="+" ref_description="SGN-U581973 Tomato 200607#2 [2 ESTs aligned] ">
      <seq>gcatatggagtataaccagatttagctgtgcataagttttgaccatctcaaatgtcaaggccacaggtcaccatcactttgggacgctcgggtcaaaaagtggttaagcgatcatcagcttctcagggtaatggttttagtcaacagacattgtcaagaggcaaaaggtcattaggagagacctataggactgactctgaggatcctacaaaatcccttcgtaaacggtaaaatcttttgtttgttgttctggttgagctaatgtaggttgtatctaatttattgttttcagaataatggaaggaatataaaaaaactatcaaagttagagtggtagttttgattttatttgatagtggaagttttgctattgtttttgcaagtgtgcgaggggataaagatgcaggaggttccagatatggcagacagaatggtgcacgcattgggaaaaatgacctccgactgaaactaatgcacagaagaaggcaaagggaaattcatctgcagattgaaaaaagaaaaaaggagcagcataagaggatgacaagaagtgttcaatctgcagaacaatctcacaagaggcttgtcaccagcagccaaccgtcgtcaggagctagcgaattgcttcagatagaggcaattagatcctcctatacatcacaaactgctgctggtgttagatcaagatccccttatagacttgcaaacgattctaaagaagtctcttcttcaaggaatatcactgcagctcagcatgtaccgtcagtaaggccagccgaagcttcaagaatggttcatatggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="48322" stop="46608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48023" g_stop="48005" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48004" i_stop="47910" i_length="95">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47909" g_stop="47833" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="96" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47832" i_stop="47735" i_length="98">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47734" g_stop="47398" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="433" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47397" i_stop="47278" i_length="120">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47277" g_stop="46908" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="803" r_length="370" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-U581973" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>803</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U581973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48023" e_stop="48005"/>
          <exon e_start="47909" e_stop="47833"/>
          <exon e_start="47734" e_stop="47398"/>
          <exon e_start="47277" e_stop="46908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATATGGAGTATAACCAGGTAGGTATCTCATTCTCTTTCACCTCCCATTTTTTAGGGTTCCTTCATTTCTATTGACTATCGATTGTTGCATCTTGTTGCTGCAATCCTTTCAGATTTAGCTGTGCATAAGTTTTGACCATCTCAAATGTCAAGGCCACAGGTCACCATCACTTTGGGACGCTCGGGTCAAGTAAGCTTTCTCCACTGTTTTTCGCTTTATGGATCTGTTTGGAGGTTTCTTAATTGTGGGTTCAATTTTTTCTTAATTTGTTACTGTTAAACTTGCAGAAAGTGGTTAAGCGATCATCAGCTTCTCAGGGTAATGGTTTTAGTCAACAGACATTGTCAAGAGGCAAAAGGTCATTAGGAGAGACCTATAGGACTGACTCTGAGGATCCTACAAAATCCCTTCGTAAACGGTAAAATCTTTTGTTTGTTGTTCTGGTTGAGCTAATGTAGGTTGTATCTAATTTATTGTTTTCAGAATAATGGAAGGAATATAAAAAAACTATCAAAGTTAGAGTGGTAGTTTTGATTTTATTTGATAGTGGAAGTTTTGCTATTGTTTTTGCAAGTGTGCGAGGGGATAAAGATGCAGGAGGTTCCAGATATGGCAGACAGAATGGTATTATCTGAAATATTTGTCATTACATGTTGTTTTGTTTTTTGGATGATTCCAGTTTCCTGTGTCATTCTTTGGTCTAGCATATTAGCTCATGTTTGGTACTGTTACTGTGATGTAAAGGTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAAGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGCTGGTGTTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGC</genome_strand>
        <mrna_strand>GCATATGGAGTATAACCAG...............................................................................................ATTTAGCTGTGCATAAGTTTTGACCATCTCAAATGTCAAGGCCACAGGTCACCATCACTTTGGGACGCTCGGGTCAA..................................................................................................AAAGTGGTTAAGCGATCATCAGCTTCTCAGGGTAATGGTTTTAGTCAACAGACATTGTCAAGAGGCAAAAGGTCATTAGGAGAGACCTATAGGACTGACTCTGAGGATCCTACAAAATCCCTTCGTAAACGGTAAAATCTTTTGTTTGTTGTTCTGGTTGAGCTAATGTAGGTTGTATCTAATTTATTGTTTTCAGAATAATGGAAGGAATATAAAAAAACTATCAAAGTTAGAGTGGTAGTTTTGATTTTATTTGATAGTGGAAGTTTTGCTATTGTTTTTGCAAGTGTGCGAGGGGATAAAGATGCAGGAGGTTCCAGATATGGCAGACAGAATG........................................................................................................................GTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAAAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAAGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGCTGGTGTTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U577574" ref_strand="+" ref_description="SGN-U577574 Tomato 200607#2 [39 ESTs aligned] (*GB) gi|14275859|emb|CAC39620.1| (e_value=5e-81) ferredoxin-thioredoxin-reductase catalytic subunit B [Solanum tuberosum]; (*ATH) AT2G04700.1 (e_value=7e-61) | Symbol: None | ferredoxin thioredoxin reductase catalytic beta chain family protein, contains Pfam profile: PF02943 ferredoxin thioredoxin reductase catalytic beta | chr2:1646805-1648554 FORWARD | Aliases: F28I8.26, F28I8_26; (*SWP) sp|P41349|FTRC2_SPIOL (e_value=2e-62) Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Spinacia oleracea; ">
      <seq>gcccgtttattaatttattttaattataatttgtcttcagatattaggtgaaaagaaaaggagagaacggatagtaatatataaatatcaacgctgtacgaaagagattttttcctttccgaagttgtggtggttaacagaatcacatttttgactcaatcggaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaacattacgtttttgttgtacatgtatatttgagtattagatgaagagcaacaatccagttctgatgtgacatgttgctgaaaccccatccattacattgttgtgattctgatctcgtctagtgagattgggtgggtgaataacagtgcaattatgctaactgttgtgtgatgcatctagattgtatgagtcataactcatattaggggattttgggtggcttcagcttcagctaatgcaaatcctgattttgtataaaactggaatcaatttccaaaagctgctttgtgaagttcaatcccagtcgtctgacgtgttaataatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="55677" stop="49646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55378" g_stop="55056" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="323" r_length="323" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55055" i_stop="54486" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54485" g_stop="54373" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="436" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54372" i_stop="51514" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51513" g_stop="51464" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="486" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51463" i_stop="51334" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51333" g_stop="51262" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="558" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51261" i_stop="50613" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50612" g_stop="50552" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="619" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50551" i_stop="50342" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50341" g_stop="49946" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="1015" r_length="396" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-U577574" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1015</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U577574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55378" e_stop="55056"/>
          <exon e_start="54485" e_stop="54373"/>
          <exon e_start="51513" e_stop="51464"/>
          <exon e_start="51333" e_stop="51262"/>
          <exon e_start="50612" e_stop="50552"/>
          <exon e_start="50341" e_stop="49946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCGTTTATTAATTTATTTTAATTATAATTTTTCTTCAGATATTAGGTGAAAAGAAAAGGAGAGAACGGATAGTAATATATAAATATCAACGCTGTACGAAAGAGATTTTTTCCTTTCCGAAGTTGTGGTGGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTAGGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAACTGGAATCAATTTCCAAAAGCTGCTTTGTGAAGTTCAATCCCAGTCGTCTGACGTGTTAATAATG</genome_strand>
        <mrna_strand>GCCCGTTTATTAATTTATTTTAATTATAATTTGTCTTCAGATATTAGGTGAAAAGAAAAGGAGAGAACGGATAGTAATATATAAATATCAACGCTGTACGAAAGAGATTTTTTCCTTTCCGAAGTTGTGGTGGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTAGGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAACTGGAATCAATTTCCAAAAGCTGCTTTGTGAAGTTCAATCCCAGTCGTCTGACGTGTTAATAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U570840" ref_strand="+" ref_description="SGN-U570840 Tomato 200607#2 [2 ESTs aligned] ">
      <seq>aggcacgagggttttgaacgttaggatactccctcctaggctataaagtgagaatttatcgtatctgcttggaaactgtattgtcgttttactaactccaagataatggcattctgtatacttgaagtttaggacaagctgcaagtgtgtgatgtcatttcagttccaaaaagttgcttctatactatagctgcttgattattgttgaatagtattttgttgctcagaagttctactttggtcttattacctcataaaaaaaaaagtgatacctttggtttagagcttgaatagccaatcactttttcccaggtatccttcactttatatttcaggtttaggtgtgtgttcgtgtatcttctagaagcatatttctatgtaagttcgtgaaagtatgaatttaaaattgtggagctgtggaaactcttgaactgaggggatatcaattatcaaagacttataatgagagataaacaatagcacaaagctaattatataataaaggacagttatacaaggaatttttaacacaaagaagggaataagaattgagaaacttttaataatgtgagtacaagatttaccatctcataaacaagatagaagaatagattttatcatctcataaacaagatagaagaatagatttatctcaagtttcagagaatgtgactgtgacggagttaatagattgctaaatacaagccaatcacaaagatcaatccaacatgctgtccttctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="54214" stop="52875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53918" g_stop="53175" g_length="744"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="744" r_length="744" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-U570840" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U570840" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53918" e_stop="53175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTT</genome_strand>
        <mrna_strand>AGGCACGAGGGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U581023" ref_strand="+" ref_description="SGN-U581023 Tomato 200607#2 [41 ESTs aligned] (*GB) gi|639834|emb|CAA58823.1| (e_value=0) NADH dehydrogenase [Solanum tuberosum]; (*ATH) AT5G08530.1 (e_value=0)  Symbol: None | NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial, putative, similar to NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) from {Homo sapiens} SP:P49821, {Bos taurus} SP:P25708... ; (*SWP) sp|Q54I90|NDUV1_DICDI (e_value=0) NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial OS=Dictyostelium discoideum GN=ndufv1; ">
      <seq>cttatttttttcttatttttatgagaaagagagcttcaatctcaccctaatctgctggagaatcagctgaatttcgtcgattaatcacatttctgcttcaatattcatggcacctataaagggccttctttctctacaacgaactgcattagctcagcgttctagtgaaagatggggccaatatggtaggttatttagcactcaggctgcatcaactgctagcactccccaacctacacccccacccccacctcccgagaggactcactttggtggccttaaagatgaggatcgtattttcacaaatctctacggattgcatgacccttacctcaaaggtgccatgaagcgaggagattggtacagaacaaaagatcttgtcatcaagggttctgactggatcgtgaatgaaatgaagaaatctggtcttcgaggacgtggtggtgctggttttccatctggtctcaaatggtccttcatgccaaagacaacagatggccgtccttcatatcttgtcgtcaatgctgatgaaagtgaacctggaacctgtaaagacagggaaatcatgcggcatgacccacacaagttgttggaaggctgtctgattgcaggagtggggatgagagctagagctgcttatatttatatcaggggagagtatgtgaatgaaaggttgagccttcagaaggctagacaagaagcctatgaagctggattgttggggaaaaatgcttgtggatctggttatgattttgacgtatatattcattttggtgctggtgcctatatttgtggtgaagagacagctcttctggagagccttgagggcaaacaaggcaaaccaagattgaagcctccatttccagctaatgcaggactatatggatgtccaacaactgttacaaatgttgaaacagtagctgtttcaccaaccatcttaaggcgtggtccagagtggtttgctagttttggccggaagaataatgccgggacaaagctgttttgcatctcaggccatgttaacaagccctgtacagttgaagaggaaatgagtatttcattgaaggagctgctacagaggcactgtggtggtgtgcgtggaggatgggacaatttgcttgctgttataccaggaggttcatctgttccactgcttcccaagaacatatgtgaggatgtacttatggattttgatgcactcaaagctgtgcagtcagggttgggaactgctgctgtaattgtcatggacaagtcaactgatgttgtagatgcaattgcaaggctctcgtacttctacaagcacgagagttgtggtcaatgtacaccatgtagggaaggcacaggatggctttggatgatcatggaaagaatgaaggttggcaatgcaaagttggaagagattgacatgctccaagaggtgacaaaacagattgaagggcacactatttgtgccttgggtgacgctgctgcttggccagtacagggtcttattaggcactttagaccagagctagaaaggaggatcagggagcatgcagagagggagctacaacaggcagctgctgcttgattcttttatgagtttgctgtttgataccatgggaataaattttgagaagtaccagaagtatgaatgtgggaggggaaagcaggacgcagagcttccctatatccagccactttttattatcaaacttgtgtagaactattgttacattgttggcccaatgggtaatttatgtttcagagctggtacatctaatgtcttaatgtttccttacattatcattgccatggttttggtagttgaaagatgctttaatatttgtcatgttgcgttaaataagatctacactttggcaattcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="58716" stop="63219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59016" g_stop="59124" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="60211" i_length="1087">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60212" g_stop="61684" g_length="1473"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="1582" r_length="1473" r_score="0.999"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61685" i_stop="62633" i_length="949">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.424" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62634" g_stop="62919" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1583" r_stop="1868" r_length="286" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-U581023" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1868</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U581023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59016" e_stop="59124"/>
          <exon e_start="60212" e_stop="61684"/>
          <exon e_start="62634" e_stop="62919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATTTTTTTCTTATTTTTATGAGAAAGAGAGCTTCAATCTCACCCTAATCTGCTGGAGAATCAGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATGGTAAGTCCCTATCTTCGATCTGTAATTTTTTTGCGCCACCAAAATACAAATGAAAATTTGTTGTGAGAATACGCCTTACGTGCATTTTGATGCGTCCTCGGTTTGTTCGTTGATTACTCTTTTGGTACTCTTCATAGGATATTTATTGCAAATTTATATTTTCAGAGATGTGGCTTAATTTTAACTGATTCGAATGGCCATGGTATTCCTAGAAAGATGAATGATGAGGAACCCTAAATTTTATTTGGCTAGCACATGTGGGTATTGCTTTTGATCTTTTTTGATTCCTGGATAAGTTATTCAGGAGAGGTGTTGCTTCATTGATCTGCTTTCGTTGAAAAAAAATGGGTTATTTTTTTAGATTGGAGTATGTTATAAGTTATGCAAGTTCATATTTTGAACCTAACCTCCTTATCAGAACTCTTTAATTCATAGACTCCGTAGCTTCTTTTCTTTGTTTGTGTGTGTTTTCAACTTTGTAATTTAGAATGAGTTATATGTATATAGATTAATAAGGAGTTAGTGTAGTCTTCCGCTGTACTTTGAATTAAGCTCTTTCAAGGTAAGCTTCTTTTTTCAGGGAAAGAAAACCTTCATACTCTATTACTTCGGAAGGCTTATGTATTTATTTTAGAGAGGTAGATGTAAATTAAATTAGTACCTAAACTTTGAAAACAGTTAGTTAGAGATGTTTTGCGTAAGTGTTTCCTCCCCTCCCCCACCCAGACATCAAAAGGAGGGTATTCTTTTTGTTTCTTCCCCTCTTGTGCAATTCCCTTAGCATCAGGTATTAACAATCTATTTTGGGAATAATTTTTTTGGAAATGTTACTGTTACTCTCTCGATCTTATGTTTCTATTCAATCAACTCTGCTTCGGTGAGTTTAGCAAAGTGTACCCCATCTAAAGCCTGGAAAAGAGTTGTGTTGTGGTTGGTCTCCTAGAAAAAGAGAGTATTTTGCAATCATGATGCATAGACCCATCGCTTAGTGCAGTATAATACAATCTTTTACCTTTGTAATTATGCTTGCTCAGTCTCGCCTCTTATGAGGCTAAAATTACTGATGTGTGGCATGTTCTTCTAACAGGCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGTGGTGAAGAGACAGCTCTTCTGGAGAGCCTTGAGGGCAAACAAGGCAAACCAAGATTGAAGCCTCCATTTCCAGCTAATGCAGGACTATATGGATGTCCAACAACTGTTACAAATGTTGAAACAGTAGCTGTTTCACCAACCATCTTAAGGCGTGGTCCAGAGTGGTTTGCTAGTTTTGGCCGGAAGAATAATGCCGGGACAAAGCTGTTTTGCATCTCAGGCCATGTTAACAAGCCCTGTACAGTTGAAGAGGAAATGAGTATTTCATTGAAGGAGCTGCTAGAGAGGCACTGTGGTGGTGTGCGTGGAGGATGGGACAATTTGCTTGCTGTTATACCAGGAGGTTCATCTGTTCCACTGCTTCCCAAGAACATATGTGAGGATGTACTTATGGATTTTGATGCACTCAAAGCTGTGCAGTCAGGGTTGGGAACTGCTGCTGTAATTGTCATGGACAAGTCAACTGATGTTGTAGATGCAATTGCAAGGCTCTCGTACTTCTACAAGCACGAGAGTTGTGGTCAATGTACACCATGTAGGGAAGGCACAGGATGGCTTTGGATGATCATGGAAAGAATGAAGGTTGGCAATGCAAAGTTGGAAGAGATTGACATGCTCCAAGAGGTGACAAAACAGATTGAAGGGCACACTATTTGTGCCTTGGGTGACGCTGCTGCTTGGCCAGTACAGGGTCTTATTAGGCACTTTAGACCAGAGCTAGAAAGGAGGATCAGGGAGCATGCAGAGAGGGAGCTACAACAGGCAGCTGCTGCTTGATTCTTTTATGAGGTTGGTTCTTAAACTTTTGTTACATTTACATTGTAGTGTTTGATACTTGATAGTAACCATGAATCATCATCTTAATAAAACATTCATCTAAAAATTCGTTGCATGCTGTAAACTTTAATAAAGTGAAATTGGTTTCCAAACTCTTTCTAGTTCCCTTTTTTTGTTCGGATAATGGGTCTTTTTTTATCCTCTTGTTGTTTGGATTATCAAAGATCATAGTAACATGTACAAAATACTCCAAGCCCAAGGTACACCTCTCAGGAACTTTATCTCCTGCCCTTTTGTAATACTGCTGACCTCTCGCTAGGTCAATGCAACTTCAATTATTTCTGTCATGACAAAGAATTACCAAAATTTCCTTCCAACCGGACTCTTCTTTTGACCAATATAGGAGAAACCAAAAAAAAAAAAAAAAAAGAAAGGAGCAGGAACAGTCATAAAACTGGCGACTTTAGTGGATGTTGCATGACAACCCTGTGCATGGGAATGTGTTCTTTGATCACTGAAATTGAGGGACACGGCTCTCCAAAAATTAAGAAATTAATGAAAAAAAGCTTGAAAGGTGTGCCTGTAGTTATAATCTAATTGAATATAGCAAAATGATCTAAACAGCTCTGTGATCTTCAACATTTTGCATATTCCATCTTCATGTATGAAGTTAAATATACTTGTCAATAGTCATCCTATTGAATTGCTACACAGAGTCTCTGTAACCAGCCCTGCCTTTGACAAATTTAAGCACTGATGTCTAATCTTGAAGCATACCGACTTCACCACTCTGATCATTGTTGGTACAATGCTATAATAGATTGATTCCTCCCCACCACCCCTGCCTTCCCTATTGGTCATGTCCCTCAAATATTGATTTTCATACTTGCTGAATAATTAAATTACTTGTATGTATCACGGCATGGCTATTTCATAATCGTTTCATGTCTCTGCCTTTCAGTTTGCTGTTTGATACCATGGGAATAAATTTTGAGAAGTACCAGAAGTATGAATGTGGGAGGGGAAAGCAGGACGCAGAGCTTCCCTATATCCAGCCACTTTTTATTATCAAACTTGTGTAGAACTATTGTTACATTGTTGGCCCAATGGGTAATTTATGTTTCAGAGCTGGTACATCTAATGTCTTAATGTTTCCTTACATTATCATTGCCATGGTTTTGGTAGTTGAAAGATGCTTTAATATTTGTCATGTTGCGTTAAATAAGATCTACACTTTGGCAATTCCA</genome_strand>
        <mrna_strand>CTTATTTTTTTCTTATTTTTATGAGAAAGAGAGCTTCAATCTCACCCTAATCTGCTGGAGAATCAGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGTGGTGAAGAGACAGCTCTTCTGGAGAGCCTTGAGGGCAAACAAGGCAAACCAAGATTGAAGCCTCCATTTCCAGCTAATGCAGGACTATATGGATGTCCAACAACTGTTACAAATGTTGAAACAGTAGCTGTTTCACCAACCATCTTAAGGCGTGGTCCAGAGTGGTTTGCTAGTTTTGGCCGGAAGAATAATGCCGGGACAAAGCTGTTTTGCATCTCAGGCCATGTTAACAAGCCCTGTACAGTTGAAGAGGAAATGAGTATTTCATTGAAGGAGCTGCTACAGAGGCACTGTGGTGGTGTGCGTGGAGGATGGGACAATTTGCTTGCTGTTATACCAGGAGGTTCATCTGTTCCACTGCTTCCCAAGAACATATGTGAGGATGTACTTATGGATTTTGATGCACTCAAAGCTGTGCAGTCAGGGTTGGGAACTGCTGCTGTAATTGTCATGGACAAGTCAACTGATGTTGTAGATGCAATTGCAAGGCTCTCGTACTTCTACAAGCACGAGAGTTGTGGTCAATGTACACCATGTAGGGAAGGCACAGGATGGCTTTGGATGATCATGGAAAGAATGAAGGTTGGCAATGCAAAGTTGGAAGAGATTGACATGCTCCAAGAGGTGACAAAACAGATTGAAGGGCACACTATTTGTGCCTTGGGTGACGCTGCTGCTTGGCCAGTACAGGGTCTTATTAGGCACTTTAGACCAGAGCTAGAAAGGAGGATCAGGGAGCATGCAGAGAGGGAGCTACAACAGGCAGCTGCTGCTTGATTCTTTTATGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCTGTTTGATACCATGGGAATAAATTTTGAGAAGTACCAGAAGTATGAATGTGGGAGGGGAAAGCAGGACGCAGAGCTTCCCTATATCCAGCCACTTTTTATTATCAAACTTGTGTAGAACTATTGTTACATTGTTGGCCCAATGGGTAATTTATGTTTCAGAGCTGGTACATCTAATGTCTTAATGTTTCCTTACATTATCATTGCCATGGTTTTGGTAGTTGAAAGATGCTTTAATATTTGTCATGTTGCGTTAAATAAGATCTACACTTTGGCAATTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U564117" ref_strand="+" ref_description="SGN-U564117 Tomato 200607#2 [17 ESTs aligned] (*GB) gi|157345538|emb|CAO14836.1| (e_value=1e-49) unnamed; (*ATH) AT3G01370.1 (e_value=6e-80) | Symbol: None | expressed protein, contains Pfam domain, PF04581: Protein of unknown function (DUF578) | chr3:139018-143699 FORWARD | Aliases: T13O15.1, T13O15_1; (*SWP) sp|Q9FYT6|CRS1_MAIZE (e_value=6e-18) Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Zea mays GN=CRS1; ">
      <seq>gaattggtgaaggtaataacggggaggaaaaacattgaagaggtccaccaaatagctaggatgttagaggcagagagtgggggaatactagttgctgttgagcgagttaataagggttatgcgatcattgtataccgaggaaagaactacgaaaggcctgcttcattgaggcctcagactcttctaagtaaaagagaagcaatgaagcgctctatagaggctcagcgacgtcagtcattgaaattacatgtcttaaagcttacacaaaatatagaggctttgcagtcacggttggccaagaatgaggagataagtcatattcagtccccggatatagttgataggcaggtacccgtgatgggcatatcagatgctgcaggtggaactaattaccagtctattgtagcaagtcctattgaggattctggagatgctgcagaagacactgaccccagttctcagaaagaattatcaaatgatttctcggacacagaccacgattcgcagcaagaatttccaattaatccgtttttccaatatgagggcaaggttgaggctatgggtgatacaattcaacctcagcatcaatctatttcatcagatcaaagagtcgaaaagtatgttcaatgtgaatgtggatcaagaaacattcggcagtgcagtgagtgaatctgtttctaagtcttccaggggagaagttaagatccacttttctgagaccagaagtttcaacaaacctcgggaagttaacaataaaatggaggtgtctcaacctcctcctgtaaaacctcaacaaacacttagatccacccggagtaggtccgaagggatgtctaccagaagagtacagctttccaacagggagaggctgcttctcagaaaacaagccctcaagatgaagaagcaaccagtgcttgctgttgggaggagcaatattgttactggagttgcaaaaaatatcaaagaacactttaagaagtatcctcttgcgattgtgaatgtcaaaggaagggcaaaagggacttcagttagggaggtggtttttaagctggagcaagctacaggtgctgttcttgtttctcaagagccaagcaaagtcatattgtatagaggttggggaccaggtggagagcgtggtgcttctaatggaaatgacaccagtaattcgaaaaacagcagagagcaaaaggaactaatgtcaatatctcctgaacttatatcagcaatcagacttgaatgtggcttgcagtccaacaatgatatggaagttgcttcataggcaacaaccttggtaaaagggaagttaccagttggtttttttaggttcaaagccttgagctctcatctaacaacgcttttgtgcacccgatgatggtctctgaattgtctgtgcatgcatctaacaattgctttcttggtgtggagttggaatctaaattgtgcatcacctctcccatacaaatgaaagggaatcggcttccaccaaacttctctccttgcagaatttcagtagctggaataagttccacatgataattcctgtctcatggtcattgtgcatcaactggagagattctgtatgtcagttaagtggcgctgctaatttacattttatgtaaatagaagtttcaattcaaaaatacgcatctattaccatgtcatctttttaattttccctagaaacaaaaaagactgatgcacattgcacatgttcctttagattacatactggttttagattagttatgttcatgacaaaacaagtatgtaaacatataaattcaccaaaaatctaatatatgacattgtctttatgacattgctttttaatcaacactaggggcccgtttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="68695" stop="63573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68395" g_stop="68162" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68161" i_stop="66925" i_length="1237">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66924" g_stop="66865" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="294" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66864" i_stop="66763" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66762" g_stop="66637" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="420" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66636" i_stop="65903" i_length="734">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65902" g_stop="65633" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="691" r_length="271" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65632" i_stop="65536" i_length="97">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.071" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65535" g_stop="65304" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="692" r_stop="923" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="65303" i_stop="64888" i_length="416">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64887" g_stop="64757" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="924" r_stop="1054" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="64756" i_stop="64670" i_length="87">
            <donor d_prob="0.722" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="64669" g_stop="63873" g_length="797"/>
          <reference_exon_boundary r_type="cDNA" r_start="1055" r_stop="1852" r_length="798" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-U564117" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1850</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U564117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68395" e_stop="68162"/>
          <exon e_start="66924" e_stop="66865"/>
          <exon e_start="66762" e_stop="66637"/>
          <exon e_start="65902" e_stop="65633"/>
          <exon e_start="65535" e_stop="65304"/>
          <exon e_start="64887" e_stop="64757"/>
          <exon e_start="64669" e_stop="63873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTGGTGAAGGTAATAACGGGGAGGAAAAACATTGAAGAGGTCCACCAAATAGCTAGGATGTTAGAGGCAGAGAGTGGGGGAATACTAGTTGCTGTTGAGCGAGTTAATAAGGGTTATGCGATCATTGTATACCGAGGAAAGAACTACGAAAGGCCTGCTTCATTGAGGCCTCAGACTCTTCTAAGTAAAAGAGAAGCAATGAAGCGCTCTATAGAGGCTCAGCGACGTCAGGTAATGTTGTAGTATTTAAGTAGTATTTAAGGTGCCAGTAAATGCATCTAGAAGTTCCCAGATATAATACCTCTTTATTTTAGTAATTGACTTTGGCTTGGTTTTAAAATTTTGAAGTAGATTTGACCCCTTTATCAACTATACTTTTCTCTCCTTCCATTCAAAATCTAACATTCTGATTCTTTTGTGTATCTCAAAAAAAAAAATAAAAAAAATCTAACGTTCTGATTTACCCACTTAAATATGATTGCAGCTATACATCTCACTTTCTACTAAAAGACTATATGAAGAGTGGCAGAATTGAAATGTAACTTATCCCAGCCAATTTCAGAGTTAGAATGTATTAAAAAACCCAACTTTACTCGAGAAAAGGAAAATCTCCAAAGAGGCCTTTCCTCATGTGGTCTGAAGAATAGCCAACTTTGTCACTCAGTATCAAAATCGTATTATTTTGTGTGATCCACTTTTGTTCGTGGAAGTACGTCGAGTCATTTAAACGTCTAGGCATAAACATGGGGGGTTTTGGTTAAAAAGGAACCATGGTAAGTTTAGCTGTGAAAGAATCCAACATCTAGCCCATCCTTTTATGGACTCCATTGGAAATTCTTGCACTACCCAAGTGCGACAACCATATAATTCAACACCGTCTTGCATGTGTAACCTGATTTGGGTGCAATGATAGACTTACAAAGGTTAGCTCTAGTATATGTGAAAGAATTTGAGCTTTCAGCCCAAAATCATATGGTCATGCTTAGACTTTGGAGTAATCCAAGACCTCGATAGACCACTTTGGAAGCCTTCAACCAATCTAGACATTTAACTACATAACTCAACATAAGGAATAGCTTATGTGTTGGTACTTTAAATTTTTTTTATAATGAGGGCATTTTCCATTTGTTATGTATCTGTTTCTAATTCTTGTTCTCACAACTAGTTAAATTTGCTGGCACTTGTTTCTAGAGATGGTTTTCCTTCTATTATTATCACTGTACTTTTACCATCAAAAAATAGAAAGGGAAATAACAAAAAAGTGTCAGTGTATTTCTGCAACACATTTGAGTTGAGGTGCTGGTGAACCATTTTGTATGACAGTCTGTAAGCTTCTCTAACCTTGTGAGGTTTCTTATTTCTATAGATTTCCATTTATCTCCTCTTCTTTTCACTCGTCTTTCTTTCTGATGCTTCTGCCAAAACTCTTCCACTGCTAATCTTTCTTTTACTTTGTTTTCTGATGCAGTCATTGAAATTACATGTCTTAAAGCTTACACAAAATATAGAGGCTTTGCAGTCACGGTTGGTGTGTTATCTTACCTTATTTGAGTTGCTTTGATTTTTGTGTTCCAGTTACTAGCTCATTTCTAAATTATATTGAAATGTTGCACGATTTGCTTTGGTTCAGGCCAAGAATGAGGAGATAAGTCATATTCAGTCCCCGGATATAGTTGATAGGCAGGTACCCGTGATGGGCATATCAGATGCTGCAGGTGGAACTAATTACCAGTCTATTGTAGCAAGTCCTATTGAGGTGAAAATTAATCCATTTATTGTACAATATTCTGTCACTGTTGAAGGAACAATTATGTTTCGTGTTGCTTCTCATATCTTTGATGCTTGTTGGATTCGAGATCCTTTATCAACCATATATAAGGTACAAGCTAGTGTGTCACCTTCAGAAGTCTTTCAGATACCCCAATAGGCACAAACAACTTGCCTTCAAGTCTTATGCATATTCTTTATGCTTTCATTAAATTTATTAGGACAGCATGTATCGTTAATACCTATGTTTAAGAGATGGATGGATCTGGAGTTTTGTGGACATATAACCACTTGCATCTTATTTTTATGTATGAAAACTTGGTTGTAGAATCCTGTGTCATTGTCTTCTTTAGTCATCATAATTAATGATAAGTCAAAATAGCTGCTGCCCACATGACCCAAATTTGTAATTTAAGGAATTTGATGTTCGTAACCTTTTCTATCTGGGATAGGTTTTTCTGCTTCCCAACTGCATGCTGAATGTCATTGTAAAAACAATCCTTCTAGAATCAAACATTGTTATATGAGTTTCTGTATCATAGAGTACTGAGCAAAATTGAAAAAAAAGGCTCTGCTGATTATGAAATATGTTCAAAATGGTTGATATCAATCAATGGTTAAATGTATGTGGTCCTCAAACTCTGTTGTATCATTTCTTGCACTTTTTATTATTTTGCAGTGTGTATTGATAGAGAGAGAAGCTTATTTAGCTTTTATATTCAGGATTCTGGAGATGCTGCAGAAGACACTGACCCCAGTTCTCAGAAAGAATTATCAAATGATTTCTCGGACACAGACCACGATTCGCAGCAAGAATTTCCAATTAATCCGTTTTTCCAATATGAGGGCAAGGTTGAGGCTATGGGTGATACAATTCAACCTCAGCATCAATCTATTTCATCA-ATCAAAGAGTCGAAAAGTATGTTCAATGTGAATGTGGATCAAGAAACATTCGGCAGTGCAGTGAGTGAATCTGTTTCTAAGTCTTCCAGGGTAAAGTTCATTTTCTCTTCACAACTATTACACTATTTCTTTTCCATCACAAGGTTAATGGTTAAAAAAATTCGGATGTCTTTCTCATTGATTCTAGGGAGAAGTTAAGATCCACTTTTCTGAGACCAGAAGTTTCAACAAACCTCGGGAAGTTAACAATAAAATGGAGGTGTCTCAACCTCCTCCTGTAAAACCTCAACAAACACTTAGATCCACCCGGAGTAGGTCCGAAGGGATGTCTACCAGAAGAGTACAGCTTTCCAACAGGGAGAGGCTGCTTCTCAGAAAACAAGCCCTCAAGATGAAGAAGCAACCAGTGCTTGCTGTTGGTAATGAGAACCTCTTTTATTTTCTCTATATTCCTCCTACTGTGTTGTAGTTTGTTGTATAGAGTTGCTAGTTTTGAAAACAAAGAATTAACCTTTTGCCAACTGCGGGGCATTTTCATCTTAAGCGAGATGACACTGCAAGCTTTAGCTTTCACTGAGTTGGGTATTCACTCAAATCTTCATTGTTATGAGATTTGGTTTTGGGATATTAGAATATTTCACTTGTGGTGGACCTGATGGTAAACTGGAATGCATTTAGTTGTAGTTTTCACCTTGAAAGAGCAGGATAAATTTATTTGATGCGATTGGGAATTCCGCGTTTTCTGCATATCATGCTGTTGATCTTTCTCCCCACCCTAAGCAGTCTTGGCGACTCCTGACCTTAAACCTTGTCTTCCTTTGCACCTTCATATCAGGGAGGAGCAATATTGTTACTGGAGTTGCAAAAAATATCAAAGAACACTTTAAGAAGTATCCTCTTGCGATTGTGAATGTCAAAGGAAGGGCAAAAGGGACTTCAGTTAGGGAGGTGGTTTTTAAGCTGGAGGTTTGTTTATTGGCTATTTTAGTTGCTCGTTTAATTTGGCAGCACCCCCATATTCACTGAAAGCCTATCTTTTGACACTTACTGCAGCAAGCTACAGGTGCTGTTCTTGTTTCTCAAGAGCCAAGCAAAGTCATATTGTATAGAGGTTGGGGACCAGGTGGAGAGCGTGGTGCTTCTAATGGAAATGACACCAGTAATTCGAAAAACAGCAGAGAGCAAAAGGAACTAATGTCAATATCTCCTGAACTTATATCAGCAATCAGACTTGAATGTGGCTTGCAGTCCAACAATGATATGGAAGTTGCTTCATAGGCAACAACCTTGGTAAAAGGGAAGTTACCAGTTGGTTTTTTTAGGTTCAAAGCCTTGAGCTCTCATCTAACAACGCTTTTGTGCACCCGATGATGGTCTCTGAATTGTCTGTGCATGCATCTAACAATTGCTTTCTTGGTGTGGAGTTGGAATCTAAATTGTGCATCACCTCTCCCATACAAATGAAAGGGAATCGGCTTCCACCAAACTTCTCTCCTTGCAGAATTTCAGTAGCTGGAATAAGTTCCACATGATAATTCCTGTCTCATGGTCATTGTGCATCAACTGGAGAGATTCTGTATGTCAGTTAAGTGGCGCTGCTAATTTACATTTTATGTAAATAGAAGTTTCAATTCAAAAATACGCATCTATTACCATGTCATCTTTTTAATTTTCCCTAGAAACAAAAAAGACTGATGCACATTGCACATGTTCCTTTAGATTACATACTGGTTTTAGATTAGTTATGTTCATGACAAAACAAGTATGTAAACATATAAATTCACCAAAAATCTAATATATGACATTGTCTTTATGACATT-CTTTTTAATCAACACTAGGGGCCCGTTTGG</genome_strand>
        <mrna_strand>GAATTGGTGAAGGTAATAACGGGGAGGAAAAACATTGAAGAGGTCCACCAAATAGCTAGGATGTTAGAGGCAGAGAGTGGGGGAATACTAGTTGCTGTTGAGCGAGTTAATAAGGGTTATGCGATCATTGTATACCGAGGAAAGAACTACGAAAGGCCTGCTTCATTGAGGCCTCAGACTCTTCTAAGTAAAAGAGAAGCAATGAAGCGCTCTATAGAGGCTCAGCGACGTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATTGAAATTACATGTCTTAAAGCTTACACAAAATATAGAGGCTTTGCAGTCACGGTTG......................................................................................................GCCAAGAATGAGGAGATAAGTCATATTCAGTCCCCGGATATAGTTGATAGGCAGGTACCCGTGATGGGCATATCAGATGCTGCAGGTGGAACTAATTACCAGTCTATTGTAGCAAGTCCTATTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCTGGAGATGCTGCAGAAGACACTGACCCCAGTTCTCAGAAAGAATTATCAAATGATTTCTCGGACACAGACCACGATTCGCAGCAAGAATTTCCAATTAATCCGTTTTTCCAATATGAGGGCAAGGTTGAGGCTATGGGTGATACAATTCAACCTCAGCATCAATCTATTTCATCAGATCAAAGAGTCGAAAAGTATGTTCAATGTGAATGTGGATCAAGAAACATTCGGCAGTGCAGTGAGTGAATCTGTTTCTAAGTCTTCCAGG.................................................................................................GGAGAAGTTAAGATCCACTTTTCTGAGACCAGAAGTTTCAACAAACCTCGGGAAGTTAACAATAAAATGGAGGTGTCTCAACCTCCTCCTGTAAAACCTCAACAAACACTTAGATCCACCCGGAGTAGGTCCGAAGGGATGTCTACCAGAAGAGTACAGCTTTCCAACAGGGAGAGGCTGCTTCTCAGAAAACAAGCCCTCAAGATGAAGAAGCAACCAGTGCTTGCTGTTG................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGAGCAATATTGTTACTGGAGTTGCAAAAAATATCAAAGAACACTTTAAGAAGTATCCTCTTGCGATTGTGAATGTCAAAGGAAGGGCAAAAGGGACTTCAGTTAGGGAGGTGGTTTTTAAGCTGGAG.......................................................................................CAAGCTACAGGTGCTGTTCTTGTTTCTCAAGAGCCAAGCAAAGTCATATTGTATAGAGGTTGGGGACCAGGTGGAGAGCGTGGTGCTTCTAATGGAAATGACACCAGTAATTCGAAAAACAGCAGAGAGCAAAAGGAACTAATGTCAATATCTCCTGAACTTATATCAGCAATCAGACTTGAATGTGGCTTGCAGTCCAACAATGATATGGAAGTTGCTTCATAGGCAACAACCTTGGTAAAAGGGAAGTTACCAGTTGGTTTTTTTAGGTTCAAAGCCTTGAGCTCTCATCTAACAACGCTTTTGTGCACCCGATGATGGTCTCTGAATTGTCTGTGCATGCATCTAACAATTGCTTTCTTGGTGTGGAGTTGGAATCTAAATTGTGCATCACCTCTCCCATACAAATGAAAGGGAATCGGCTTCCACCAAACTTCTCTCCTTGCAGAATTTCAGTAGCTGGAATAAGTTCCACATGATAATTCCTGTCTCATGGTCATTGTGCATCAACTGGAGAGATTCTGTATGTCAGTTAAGTGGCGCTGCTAATTTACATTTTATGTAAATAGAAGTTTCAATTCAAAAATACGCATCTATTACCATGTCATCTTTTTAATTTTCCCTAGAAACAAAAAAGACTGATGCACATTGCACATGTTCCTTTAGATTACATACTGGTTTTAGATTAGTTATGTTCATGACAAAACAAGTATGTAAACATATAAATTCACCAAAAATCTAATATATGACATTGTCTTTATGACATTGCTTTTTAATCAACACTAGGGGCCCGTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U603866" ref_strand="+" ref_description="SGN-U603866 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>tcgagggatagggaatttattgtcttctaccgagggaaggacttcttgccctctgcagtctcttcagcaatagaagaacggagaaagcaagtttttgaagaggaaaagcggaatggtcttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="69359" stop="68638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69059" g_stop="68938" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-U603866" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>122</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U603866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69059" e_stop="68938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAGGGATAGGGAATTTATTGTCTTCTACCGAGGGAAGGACTTCTTGCCCTCTGCAGTCTCTTCAGCAATAGAAGAACGGAGAAAGCAAGTTTTTGAAGAGGAAAAGCGGAATGGTTTTAA</genome_strand>
        <mrna_strand>TCGAGGGATAGGGAATTTATTGTCTTCTACCGAGGGAAGGACTTCTTGCCCTCTGCAGTCTCTTCAGCAATAGAAGAACGGAGAAAGCAAGTTTTTGAAGAGGAAAAGCGGAATGGTCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U573940" ref_strand="+" ref_description="SGN-U573940 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|147852955|emb|CAN81271.1| (e_value=4e-85) hypothetical; (*ATH) AT3G01370.1 (e_value=2e-76) | Symbol: None | expressed protein, contains Pfam domain, PF04581: Protein of unknown function (DUF578) | chr3:139018-143699 FORWARD | Aliases: T13O15.1, T13O15_1; (*SWP) sp|Q9FYT6|CRS1_MAIZE (e_value=2e-13) Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Zea mays GN=CRS1; ">
      <seq>gatcatcttcctcaacaccaatgttgcttcctttctgcaacttccatcccataaacccttctaaaaccctcttaaaaccctcaccatcacattccctcttctctagtacaccctctctttctccaaaacccttctttcctcgtgattcccttcctgttttcgccgcatcccctgatactgaagctttaccggaatccgccatccgaagaatcgccgacaagctacgcagtcttggatttgttgaacaacccaagaatcaagaaacccaagaaaatgctttgagttctaatcccactgcaaactcacccggtcaaattttcgttcctttgcctacccaattacccaagtaccgcgtgggtcacacgcttgacaccagttggagtacgcctgaaaacccagtaccgcagcctggtttagggaaatctatacagaagtttcatgaattgagggatgagttcttgaaggagaaggacaaggagaggttgaagaataaggagtataagaaagagagagcgcctagtttggcggagcttactttgccagctgaggaattgaggaggctgaggacagttgggattgcgctcaggaaaaagttaaagattggaaaggctgggattactgaggggattgtgaatggtattcatgaaagatggaggcgtatcgagcttgttaaaattacgtgcgaggacatatgtaggttgaatatgaagaggactcatgagttgttagagaagaaaactggagggctggttatatggagatctggaagtaatataattttgtatagaggagctgattacaagtatccttatttctctgagaatagcttcgagaataacagtgcacaagatgctaaccctgacttgttcatgggtgcggaagagcacatgactaactcatctggcataaatgcggtaaaatctgatgcatcgaacagaaaatctcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="71428" stop="69410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71129" g_stop="70399" g_length="731"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="731" r_length="731" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70398" i_stop="69927" i_length="472">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.218" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69926" g_stop="69710" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="732" r_stop="948" r_length="217" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-U573940" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>948</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U573940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71129" e_stop="70399"/>
          <exon e_start="69926" e_stop="69710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCATCTTCCTCAACACCAATGTTGCTTCCTTTCTGCAACTTCCATCCCATAAACCCTTCTAAAACCCTCTTAAAACCCTCACCATCACATTCCCTCTTCTCTAGTACACCCTCTCTTTCTCCAAAACCCTTCTTTCCTCGTGATTCCCTTCCTGTTTTCGCCGCATCCCCTGATACTGAAGCTTTACCGGAATCCGCCATCCGAAGAATCGCCGACAAGCTACGCAGTCTTGGATTTGTTGAACAACCCAAGAATCAAGAAACCCAAGAAAATGCTTTGAGTTCTAATCCCACTGCAAACTCACCCGGTCAAATTTTCGTTCCTTTGCCTACCCAATTACCCAAGTACCGCGTGGGTCACACGCTTGACACCAGTTGGAGTACGCCTGAAAACCCAGTACCGCAGCCTGGTTTAGGGAAATCTATACAGAAGTTTCATGAATTGAGGGATGAGTTCTTGAAGGAGAAGGACAAGGAGAGGTTGAAGAATAAGGAGTATAAGAAAGAGAGAGCGCCTAGTTTGGCGGAGCTTACTTTGCCAGCTGAGGAATTGAGGAGGCTGAGGACAGTTGGGATTGCGCTCAGGAAAAAGTTAAAGATTGGAAAGGCTGGGATTACTGAGGGGATTGTGAATGGTATTCATGAAAGATGGAGGCGTATCGAGCTTGTTAAAATTACGTGCGAGGACATATGTAGGTTGAATATGAAGAGGACTCATGAGTTGTTAGAGGTTAATAATACTTACACCCCAATACTCAATTGTCATTGTTTAAAGAAATTGAAACTGCATTCTTGGATTTTCCTGTGTAGATTAATGTAAGAAAACAATATGAAACAGCTTCACTTTGGCAATTTCTTCAGCCCTCTGTGTTGCATATTTAATTAAAGAAAGTGAGTTAATTGCCTTAGAGGACATGGATACCAGAAGAATGTATGCAACTGGTTTACTGATCCTATGGTTGTTTGCCCTGCACTTCTCTATACCACTAATTCTGAGTATATGAATTTACTTTTCCTTTAGATGTCTCAGATATGTTATATTCTATATGACATGAGTTTCCTGATCAAGAATTATAATGGTTTGGTGTTTAACCGTATTGCTTTTTCATAGGTAGAATTCATAGCTCGTAAGTTAGTTTTAATGTGCAGTACACCTCTACCATAATTCTTATCATTACTTTGGCTTATTTAAATATTCACAGAAGAAAACTGGAGGTCTTGTTATATGGAGATCTGGAAGTAATATAATTTTGTATAGAGGAGCTGATTACAAGTATCCTTATTTCTCTGAGAATAGCTTCGAGAATAACAGTGCACAAGATGCTAACCCTGACTTGTTCATGGGTGCGGAAGAGCACATGACTAACTCATCTGGCATAGATGCGGTAAAATCTGATGCATCGGACAGAAAATCTCCTC</genome_strand>
        <mrna_strand>GATCATCTTCCTCAACACCAATGTTGCTTCCTTTCTGCAACTTCCATCCCATAAACCCTTCTAAAACCCTCTTAAAACCCTCACCATCACATTCCCTCTTCTCTAGTACACCCTCTCTTTCTCCAAAACCCTTCTTTCCTCGTGATTCCCTTCCTGTTTTCGCCGCATCCCCTGATACTGAAGCTTTACCGGAATCCGCCATCCGAAGAATCGCCGACAAGCTACGCAGTCTTGGATTTGTTGAACAACCCAAGAATCAAGAAACCCAAGAAAATGCTTTGAGTTCTAATCCCACTGCAAACTCACCCGGTCAAATTTTCGTTCCTTTGCCTACCCAATTACCCAAGTACCGCGTGGGTCACACGCTTGACACCAGTTGGAGTACGCCTGAAAACCCAGTACCGCAGCCTGGTTTAGGGAAATCTATACAGAAGTTTCATGAATTGAGGGATGAGTTCTTGAAGGAGAAGGACAAGGAGAGGTTGAAGAATAAGGAGTATAAGAAAGAGAGAGCGCCTAGTTTGGCGGAGCTTACTTTGCCAGCTGAGGAATTGAGGAGGCTGAGGACAGTTGGGATTGCGCTCAGGAAAAAGTTAAAGATTGGAAAGGCTGGGATTACTGAGGGGATTGTGAATGGTATTCATGAAAGATGGAGGCGTATCGAGCTTGTTAAAATTACGTGCGAGGACATATGTAGGTTGAATATGAAGAGGACTCATGAGTTGTTAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAAACTGGAGGGCTGGTTATATGGAGATCTGGAAGTAATATAATTTTGTATAGAGGAGCTGATTACAAGTATCCTTATTTCTCTGAGAATAGCTTCGAGAATAACAGTGCACAAGATGCTAACCCTGACTTGTTCATGGGTGCGGAAGAGCACATGACTAACTCATCTGGCATAAATGCGGTAAAATCTGATGCATCGAACAGAAAATCTCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U578677" ref_strand="+" ref_description="SGN-U578677 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|157345539|emb|CAO14837.1| (e_value=3e-79) unnamed; (*ATH) AT2G04690.1 (e_value=3e-64)  Symbol: None | cellular repressor of E1A-stimulated genes (CREG) family, contains 1 transmembrane domain; similar to CREG2 (GI:24371079) (Homo sapiens) and (GI:24371081) (Mus musculus); similar to cellular repressor of E1A-stimulated genes CREG (GI:... ; (*SWP) sp|Q5ZJ73|CREG1_CHICK (e_value=1e-27) Protein CREG1 OS=Gallus gallus GN=CREG1; ">
      <seq>aataaataccagacagtactctgcaaacactcctacatttgtacagtaaacatcatgaatatcatcaacagggcagcttcgatttttcttcttttggtgttcttcttggcttttttcaaagattctgttcatgggcgccctcttttactgtcaatgtccagacccaagccggatgatgctgccttatttgctcgatggctcgtttctcagaattattggggtgtcctcaatactatagcaagtgatatgggaggagcaccgttcgggaatgttgtctcatttagtgatgggttaccggacaaaggccgtggtataccatacttctacttaacaacgcttgatcccactgctagaaatgcattgaaagaccagagatcatcatttacaatcagtgagtacgccattggaacttgcggcaagaaagatcctgagaacccatcttgtgccaaaattaccctcgtaggaaagttgaaagtggttgctggagatccaaaggaaactagctttgctcaaactgctttatttacaaaacaccctgagatggaaggttggcccaagagtcacgatttccagatatacaaattagagattgaagagatatttatgatcaattggtttggtggtcccaaacctctcaccgtggatcagtatttgcaggctaaaatggatagtcacatgaccattgcatgaacgcctttatgtatacaatctgctgacaagttcttttcaagtgaaggttgaaagtggttttggaatgtgaaaaaagggtatcaattttagtgatcaatgaaattcaactgtaaataggagatacttgtgaagctcattatcattcattcacttgtgcatttgacattttgtatgatttctggtttgtcaaataatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="75757" stop="71859"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75457" g_stop="75228" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75227" i_stop="74686" i_length="542">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74685" g_stop="74650" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="266" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74649" i_stop="74031" i_length="619">
            <donor d_prob="0.934" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74030" g_stop="73829" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="468" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73828" i_stop="72817" i_length="1012">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72816" g_stop="72738" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="547" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72737" i_stop="72648" i_length="90">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72647" g_stop="72530" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="665" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="72529" i_stop="72380" i_length="150">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="72379" g_stop="72159" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="886" r_length="221" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-U578677" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>886</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U578677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75457" e_stop="75228"/>
          <exon e_start="74685" e_stop="74650"/>
          <exon e_start="74030" e_stop="73829"/>
          <exon e_start="72816" e_stop="72738"/>
          <exon e_start="72647" e_stop="72530"/>
          <exon e_start="72379" e_stop="72159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAAATACCAGACAGTACTCTGCAAACACTCCTACATTTGTACAGTAAACATCATGAATATCATCAACAGGGCAGCTTCGATTTTTCTTCTTTTGGTGTTCTTCTTGGCTTTTTTCAAAGATTCTGTTCATGGGCGCCCTCTTTTACTGTCAATGTCCAGACCCAAGCCGGATGATGCTGCCTTATTTGCTCGATGGCTCGTTTCTCAGAATTATTGGGGTGTCCTCAAGTATGTAGTAGTTCTCTTTTTTCTAACTGAAAGATCGAATCTTTTACTTCGATTTGTTATTTTTAGTCAACCCCAGTTGGTTTGGGATATTGATTGTTGTTGATTTTGCTTCATAGTTCATGACCTAGACAGATCGAGATTCTTGATTGATTGCTGTAAGTGTAAAGACATAATTTTTCTTGTTTCTTGTGTAGCACAACTTCTCAGTTACTCCTTTTGTTTCAGTTTATTTGTCTAATTTTGACCTTGATATGGAGTGTTTAAAAGTAAAGAAAAATTTGAATATTGTGGTGTTAAACTAAAGATATGCAGAATGTATAGTATTTTGACATGCTACGTGAAAAGTTGGATTGAAGAGTGCCCAAAAAAGGAAGAGAACTTCTTTTGAAACAACAAACAAATTGAAATGGATCTGCATTAAAGATGTTTCATTTGTGGCAGCTAAAGTCAACTTATTGCCTATAACAGATAACTGTACTGACTAAATAAATAATAACTGATAATTTTACCTGAAAGCTGATTCAGTGACCTTTCTTTTGCAGTACTATAGCAAGTGATATGGGAGGAGCACCGTTCGGGTATGTATGTTAGCCTATATCTCTGTAAATTGTTTGGGGAGCTATTTTGTTTGTTTTAAGTTTTGCTTATGGATGGATTGAGATTATCTGATAGTCCTAAAAGTTGACTCTTTTGGAAAGCTTTTCTGCAGTCATGTATTTCCTGATGCTCAGAATTCTCATTTTACTACCAAAAAGGAAAGAAAAAGGTTTCGGGATGTCCTTTATTTAATGTTAACTTCATAAGGGAGGGGTCAACCTGATTGTCATCATGTTATTTGGTATTAGAAATGTATTTGTTTTTGCCATTACTCTTATAGCATACAATTTACAGTATTTCTTTTAGTGCATTCTGAAGCTGCATGATCGTAAGTCAAGTATCACTTTAGGAAAAGGAAATGTCTACATAAGAAAGTGGAATGGTGATAATTTTAATTCAGGTGATAGTTCTTTGTTCGATTTTGAAGGGGTTTGGACTTTGAATTCTTTGAAATCTATCAACATAGAATTTCATGTTTCTTGAACCCCGATAAATTTTAGGACAAGAGATGGAGGATTTGTGGAATGAGATGTTTTATGGATTTGATGCTGTTCAAGCTTGTTTTAGTAGTCTTATCTTGAAGTACTTTCTGTTGTGCAGGAATGTTGTCTCATTTAGTGATGGGTTACCGGACAAAGGCCGTGGTATACCATACTTCTACTTAACAACGCTTGATCCCACTGCTAGAAATGCATTGAAAGACCAGAGATCATCATTTACAATCAGTGAGTACGCCATTGGAACTTGCGGCAAGAAAGATCCTGAGAACCCATCTTGTGCCAAAATTACCCTCGTAGGAAAGGTGGTTGCACTAACAACTCTTCTCCTTTATACAAGAGATTTTATTTAATTTGATGCAGGTGTCTTTTAAACAAGAGTTTTTTGTATCATGCCGAATATTCTGTATCCCACTCTTTCAGGGCATATTTTCACTCCAAAGTTCAGCGTATCCCCCTTAGTTCTACATTTAGAAATGAACAGTAAAAGAGGAAATACTTACAAAGGAGGATAAAAGACCTTAGGGAGAATGGAGCCCCACTTTTTGTTGTGGATTCTATACAAGGATAATGAGGAAGGGGCCCTCTTGCCAAACCTTATAAAAGATAATTAGGGAGACTCATCTACGGATGAGAATCTCTAAGAAAAATTTGAGCTCTGAGATCTTGACACGTAACTGGACATACTAAATGCAAGGTTAGCTAGTAGTAAGCTTGACTTTAATTGGATTTTGATCCAAATATTGATATATTCGAGGTTAGTTTCTCAGATGTTCATGCAATGCATGAGGATATATTATTAAAGTTAATTTTTTCACGCAATACTTGAGGATATAAAAGACATTTCAGGTATTATGGTAATTTGAGTCATCCTGAAACTCAATATTATGCTTGCTCGCAGAAGTTAGAAAGTATACTTGCATATTGCTGCACACATTTAATTCTGAAACAGACTGGTAGTCTGAACTTTCCACTAACTGGTTCCTTGGTAATCATTTGCCCTCAACTTTTCACTATGACACTGTAGTCGGTCTGCATCAATGTAGAAAAGAAAAGAGGAAACTAAAAAACATAATATGGATAATTGGAGAATCTGTTTTCACCATGGTTGTTATCATTATATGTTGTGCTAATTGAAGCAATTACGACGTTGATGGGTTCACTCGTTAAGCATATGAAGTACATGCTGATATGCAAACGTGTGGCTTGGATGTCCAGAAAACTAAGAGTTGATTTGTAGTTCCTTTGTTCTTAAGTGTAAGTATATCGTCCACATTCTTGCTAACATTATCATACTTTGTGTCTGTGCTGTTTTAGTTGAAAGTGGTTGCTGGAGATCCAAAGGAAACTAGCTTTGCTCAAACTGCTTTATTTACAAAACACCCTGAGATGGAAGGTAAATGTCTTGGATCTGCCATTCTAAACTACTACTGTCGTCCTATGTTTACTTTTGTTAACAACAACCCTCACATGTAACTAATGGCAGGTTGGCCCAAGAGTCACGATTTCCAGATATACAAATTAGAGATTGAAGAGATATTTATGATCAATTGGTTTGGTGGTCCCAAACCTCTCACCGTGGATCAGTATTTGCAGGCTAAAATGTAAGTTTAGACTTAAGAGCTGTAAGGAAGTTGCTAAAGAAAAAATCTGATATTGTAGATGCTCAATGAATTGAAAAAATAAATAAAATGTTACTACCATTAGTTTCAGCGTTGATGTCATTCCTTACTTAACACACGATCCATACGCAGGGATAGTCACATGACCATTGCATGAACGCCTTTATGTATACAATCTGCTGACAAGTTCTTTTCAAGTGAAGGTTGAAAGTGGTTTTGGAATGTGAAAAAAGGGTATCAATTTTAGTGATCAATGAAATTCAACTGTAAATAGGAGATACTTGTGAAGCTCATTATCATTCATTCACTTGTGCATTTGACATTTTGTATGATTTCTGGTTTGTAAAATAATG</genome_strand>
        <mrna_strand>AATAAATACCAGACAGTACTCTGCAAACACTCCTACATTTGTACAGTAAACATCATGAATATCATCAACAGGGCAGCTTCGATTTTTCTTCTTTTGGTGTTCTTCTTGGCTTTTTTCAAAGATTCTGTTCATGGGCGCCCTCTTTTACTGTCAATGTCCAGACCCAAGCCGGATGATGCTGCCTTATTTGCTCGATGGCTCGTTTCTCAGAATTATTGGGGTGTCCTCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTATAGCAAGTGATATGGGAGGAGCACCGTTCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGTTGTCTCATTTAGTGATGGGTTACCGGACAAAGGCCGTGGTATACCATACTTCTACTTAACAACGCTTGATCCCACTGCTAGAAATGCATTGAAAGACCAGAGATCATCATTTACAATCAGTGAGTACGCCATTGGAACTTGCGGCAAGAAAGATCCTGAGAACCCATCTTGTGCCAAAATTACCCTCGTAGGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAAGTGGTTGCTGGAGATCCAAAGGAAACTAGCTTTGCTCAAACTGCTTTATTTACAAAACACCCTGAGATGGAAG..........................................................................................GTTGGCCCAAGAGTCACGATTTCCAGATATACAAATTAGAGATTGAAGAGATATTTATGATCAATTGGTTTGGTGGTCCCAAACCTCTCACCGTGGATCAGTATTTGCAGGCTAAAAT......................................................................................................................................................GGATAGTCACATGACCATTGCATGAACGCCTTTATGTATACAATCTGCTGACAAGTTCTTTTCAAGTGAAGGTTGAAAGTGGTTTTGGAATGTGAAAAAAGGGTATCAATTTTAGTGATCAATGAAATTCAACTGTAAATAGGAGATACTTGTGAAGCTCATTATCATTCATTCACTTGTGCATTTGACATTTTGTATGATTTCTGGTTTGTCAAATAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U584001" ref_strand="+" ref_description="SGN-U584001 Tomato 200607#2 [14 ESTs aligned] (*GB) gi|6683539|dbj|BAA89236.1| (e_value=7e-89) TMV response-related gene product [Nicotiana tabacum]; (*ATH) AT3G01360.1 (e_value=5e-60) | Symbol: None | expressed protein, contains Pfam profile PF04819: Family of unknown function (DUF716) (Plant viral-response family) | chr3:136406-138738 REVERSE | Aliases: T13O15.14; ">
      <seq>ggtaagaaggaagggaaaaagaaaggagtatatgagtcttggaaagtcaggtgagcagaaaattgagcctaaataggcaggcacagcctggccagatcaacgaagcttctctataacatagaatttcttgagatctaacgataatcaaagtcaacaatggggctattcagctatactgtcgccggcggcggatttatactaatcggcgcttgggaatctctggtctcttcttctggtgccctgaaaaattcatcaccgtcgtccactacccaatcgccgccacaaaatccatcgacagataagcatgagcaagattctgttttttcttcatcggtcacctttgtattaatcttaatcctttcgttccttttcgttctcgattccttgttatcctttttcgacgcactcaactccaaagacaacattggttccgtccttcaattgcaggttatcgcgatttctcttcttttctttctctattcggtattaggtctcatgacccgcttgaaaagttcttttcatttaccttcaccgatcctcaatttgctttgcctcttcgcttttgctgaggaatttttgttgttttatcttcaaaggaaagacccaagtggagttgaaaatcgttactataatctcttgcttgtgcctattgctatttgtgcattttgttcatttctagaattgaaaaatcccaaatcaaattacactagattaggacgtgggattgggttaatcttgcaagggacgtggactcttcaaatggggtttgcttttttctccgatttgattgcacagggatgctatttacatcaaaggagtagaggtaattacacggttaagtgtaaaggtcatcctcagtaccatcgaggtggagctattgctacccttcagttcaattgccaccttgctcttcttgtgactgtgattacttttgtatactcaattgtgtgtaaaaaacatggcattggccgtgaacatatgcggtatagacctattggagctgagatgcaacacttggaaatcgatagtcaagctcattttacattggagtctgatgaagaggatgacaatgagaatgggataaaagaagagatgaatgttgaaatgcaaaaggctattgtacctgttcctgaatcagaaactaatggctatcatacccatccttgaggaaacccatggttcattttttatgttactgggtataaagatatattctttgcagaggggttatggtttagaggttggggttccctttgtataaagaatttacatatagaaaagagaaagtttcagtctttttgtatttgatgattctagttcaaattgtaatgttgtcttagaaattttctttgaagtgatttaagtatattttcctttattgtgtgtctatggaagacttactctttgatagtaatgacgactaactttcttaacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="91749" stop="93785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92048" g_stop="93488" g_length="1441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1441" r_length="1441" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-U584001" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U584001" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92048" e_stop="93488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAAGAAGGAAGGGAAAAAGAAAGGAGTATATGAGTCTTGGAAAGTCAGGTGAGCAGAAAATTGAGCCTAAATAGGCAGGCACAGCCTGGCCAGATCAACGAAGCTTCTCTATAACATAGAATTTCTTGAGATCTAACGATAATCAAAGTCAACAATGGGGCTATTCAGCTATACTGTCGCCGGCGGCGGATTTATACTAATCGGCGCTTGGGAATCTCTGGTCTCTTCTTCTGGTGCCCTGAAAAATTCATCACCGTCGTCCACTACCCAATCGCCGCCACAAAATCCATCGACAGATAAGCATGAGCAAGATTCTGTTTTTTCTTCATCGGTCACCTTTGTATTAATCTTAATCCTTTCGTTCCTTTTCGTTCTCGATTCCTTGTTATCCTTTTTCGACGCACTCAACTCCAAAGACAACATTGGTTCCGTCCTTCAATTGCAGGTTATCGCGATTTCTCTTCTTTTCTTTCTCTATTCGGTATTAGGTCTCATGACCCGCTTGAAAAGTTCTTTTCATTTACCTTCACCGATCCTCAATTTGCTTTGCCTCTTCGCTTTTGCTGAGGAATTTTTGTTGTTTTATCTTCAAAGGAAAGACCCAAGTGGAGTTGAAAATCGTTACTATAATCTCTTGCTTGTGCCTATTGCTATTTGTGCATTTTGTTCATTTCTAGAATTGAAAAATCCCAAATCAAATTACACTAGATTAGGACGTGGGATTGGGTTAATCTTGCAAGGGACGTGGACTCTTCAAATGGGGTTTGCTTTTTTCTCCGATTTGATTGCACAGGGATGCTATTTACATCAAAGGAGTAGAGGTAATTACACGGTTAAGTGTAAAGGTCATCCTCAGTACCATCGAGGTGGAGCTATTGCTACCCTTCAGTTCAATTGCCACCTTGCTCTTCTTGTGACTGTGATTACTTTTGTATACTCAATTGTGTGTAAAAAACATGGCATTGGCCGTGAACATATGCGGTATAGACCTATTGGAGCTGAGATGCAACACTTGGAAATCGATAGTCAAGCTCATTTTACATTGGAGTCTGATGAAGAGGATGACAATGAGAATGGGATAAAAGAAGAGATGAATGTTGAAATGCAAAAGGCTATTGTACCTGTTCCTGAATCAGAAACTAATGGCTATCATACCCATCCTTGAGGAAACCCATGGTTCATTTTTTATGTTACTGGGTATAAAGATATATTCTTTGCAGAGGGGTTATGGTTTAGAGGTTGGGGTTCCCTTTGTATAAAGAATTTACATATAGAAAAGAGAAAGTTTCAGTCTTTTTGTATTTGATGATTCTAGTTCAAATTGTAATGTTGTCTTAGAAATTTTCTTTGAAGTGATTTAAGTATATTTTCCTTTATTGTGTGTCTATGGAAGACTTACTCTTTGATAGTAATGACGACTAACTTTCTTAACAAAAGGA</genome_strand>
        <mrna_strand>GGTAAGAAGGAAGGGAAAAAGAAAGGAGTATATGAGTCTTGGAAAGTCAGGTGAGCAGAAAATTGAGCCTAAATAGGCAGGCACAGCCTGGCCAGATCAACGAAGCTTCTCTATAACATAGAATTTCTTGAGATCTAACGATAATCAAAGTCAACAATGGGGCTATTCAGCTATACTGTCGCCGGCGGCGGATTTATACTAATCGGCGCTTGGGAATCTCTGGTCTCTTCTTCTGGTGCCCTGAAAAATTCATCACCGTCGTCCACTACCCAATCGCCGCCACAAAATCCATCGACAGATAAGCATGAGCAAGATTCTGTTTTTTCTTCATCGGTCACCTTTGTATTAATCTTAATCCTTTCGTTCCTTTTCGTTCTCGATTCCTTGTTATCCTTTTTCGACGCACTCAACTCCAAAGACAACATTGGTTCCGTCCTTCAATTGCAGGTTATCGCGATTTCTCTTCTTTTCTTTCTCTATTCGGTATTAGGTCTCATGACCCGCTTGAAAAGTTCTTTTCATTTACCTTCACCGATCCTCAATTTGCTTTGCCTCTTCGCTTTTGCTGAGGAATTTTTGTTGTTTTATCTTCAAAGGAAAGACCCAAGTGGAGTTGAAAATCGTTACTATAATCTCTTGCTTGTGCCTATTGCTATTTGTGCATTTTGTTCATTTCTAGAATTGAAAAATCCCAAATCAAATTACACTAGATTAGGACGTGGGATTGGGTTAATCTTGCAAGGGACGTGGACTCTTCAAATGGGGTTTGCTTTTTTCTCCGATTTGATTGCACAGGGATGCTATTTACATCAAAGGAGTAGAGGTAATTACACGGTTAAGTGTAAAGGTCATCCTCAGTACCATCGAGGTGGAGCTATTGCTACCCTTCAGTTCAATTGCCACCTTGCTCTTCTTGTGACTGTGATTACTTTTGTATACTCAATTGTGTGTAAAAAACATGGCATTGGCCGTGAACATATGCGGTATAGACCTATTGGAGCTGAGATGCAACACTTGGAAATCGATAGTCAAGCTCATTTTACATTGGAGTCTGATGAAGAGGATGACAATGAGAATGGGATAAAAGAAGAGATGAATGTTGAAATGCAAAAGGCTATTGTACCTGTTCCTGAATCAGAAACTAATGGCTATCATACCCATCCTTGAGGAAACCCATGGTTCATTTTTTATGTTACTGGGTATAAAGATATATTCTTTGCAGAGGGGTTATGGTTTAGAGGTTGGGGTTCCCTTTGTATAAAGAATTTACATATAGAAAAGAGAAAGTTTCAGTCTTTTTGTATTTGATGATTCTAGTTCAAATTGTAATGTTGTCTTAGAAATTTTCTTTGAAGTGATTTAAGTATATTTTCCTTTATTGTGTGTCTATGGAAGACTTACTCTTTGATAGTAATGACGACTAACTTTCTTAACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U587720" ref_strand="+" ref_description="SGN-U587720 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>cagcctgaccagatcaacgaatcttctgtatcacatagaataccttgagatctaacgataatcaaagtctacaatggggctattcagctatactgtcgacggcggcggatttatactaatcggcgcttgggaatcgatggtctcttcttctggtgccctgaacaattcatcaccgccgtccactacccaatggccgccacaaaatccatcgacagataagcatgagcaagattctgtgccttcttaatcggtcacctttgtattaatcataatcctgacgttcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="91831" stop="92715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92131" g_stop="92415" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-U587720" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>285</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U587720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92131" e_stop="92415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCCTGGCCAGATCAACGAAGCTTCTCTATAACATAGAATTTCTTGAGATCTAACGATAATCAAAGTCAACAATGGGGCTATTCAGCTATACTGTCGCCGGCGGCGGATTTATACTAATCGGCGCTTGGGAATCTCTGGTCTCTTCTTCTGGTGCCCTGAAAAATTCATCACCGTCGTCCACTACCCAATCGCCGCCACAAAATCCATCGACAGATAAGCATGAGCAAGATTCTGTTTTTTCTTCATCGGTCACCTTTGTATTAATCTTAATCCTTTCGTTCCT</genome_strand>
        <mrna_strand>CAGCCTGACCAGATCAACGAATCTTCTGTATCACATAGAATACCTTGAGATCTAACGATAATCAAAGTCTACAATGGGGCTATTCAGCTATACTGTCGACGGCGGCGGATTTATACTAATCGGCGCTTGGGAATCGATGGTCTCTTCTTCTGGTGCCCTGAACAATTCATCACCGCCGTCCACTACCCAATGGCCGCCACAAAATCCATCGACAGATAAGCATGAGCAAGATTCTGTGCCTTCTTAATCGGTCACCTTTGTATTAATCATAATCCTGACGTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U563781" ref_strand="-" ref_description="SGN-U563781 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|15232096|ref|NP_186784.1| (e_value=1e-80) peptide transporter -related [Arabidopsis thaliana]; (*ATH) AT3G01350.1 (e_value=7e-83) | Symbol: None | proton-dependent oligopeptide transport (POT) family protein, contains Pfam profile: PF00854 POT family | chr3:135031-137467 FORWARD | Aliases: T13O15.11; (*SWP) sp|Q9FNL8|PTR3B_ARATH (e_value=2e-42) Putative peptide transporter PTR3-B OS=Arabidopsis thaliana GN=PTR3-B; ">
      <seq>atagttctctctctctcggttttatacacataacacggatggtgaaattattcatatcaagtccttgggaggtcatatagttaaagctattagagcggctacctcaagattgacctgtggtgagattgcggtaccagataccaacaagtcaaaagttgttgagatcgaacttgaaaatgcaccactctgccaacaagattcaggcagcacggagggtacggataaaaagccggagaatgggatagtagaaattctaaaagtagtactacctctactgccagtatggactatgcttctgatgtttgcagtgatttttcaacaacctgcaacatttttcactaaacaaggtatgacaatgaggagaaacatcggaagcagcttccgaattccaccagctgcacttcagagttcaatcacaatatctataatcctgcttatgcctctttacgacacgtgctttatccccttcattcgtgttttgacacgtaatgagacaggcatcactgtgatgcagagaatgggaatagggatgtttctttcagtgatagcaatgataattgctgctgttaccgaaagaaaaagactggatattgccagaaatgtaggtactttaacttcagaattcgaagctttgccaatgagcatattttggttgctgcctcagtacatcttattgggaatttcagatatattcacagttgttggtatgcaagagttcttttactctgaagttccgataaatatgagaactttaggcatagctctttatactagtgtatttggttgtggtagtttcttcagctcattccttataacagtgattgaacatttgacaagttcaataggagaaaagcagaactggttcgccgatgacatgagcagagcccgtttagacaactattactggtttctggcattgtcaagtgcagccagttttatgatgtttatggttttctgtcgattttatagaagcaggacagttaattagagtgttggtagtgactgataatttgttattgtggaatgttgtgttttgcacattcatttttctaagtagaaagtgaaggttctgcacttgtatataaaggaagatatatctagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="98706" stop="96862"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98405" g_stop="98256" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="168" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98255" i_stop="98096" i_length="160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.550" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98095" g_stop="97162" g_length="934"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="1102" r_length="934" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-U563781" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1084</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U563781" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="98405" e_stop="98256"/>
          <exon e_start="98095" e_stop="97162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTATACACATAACACGGATGGTGAAATTATTCATATCAAGTCCTTGGGAGGTCATATAGTTAAAGCTATTAGAGCGGCTACCTCAAGATTGACCTGTGGTGAGATTGCGGTACCAGATACCAACAAGTCAAAAGTTGTTGAGATCGAGTAAGTGTTTCTTTAAAGCTTTTGTAAACGAGTTTAAATTCTACGTACTGACAATATAAAATGGTTTCATACAATAGTAAAAAAACTAAAAATGATTACTAACCTGCTACAACATATTGCCAACCAATGCTCATTATGGCTTTGCCTTGCATTTTCTTAGACTTGAAAATGCACCACTCTGCCAACAAGATTCAGGCAGCACGGAGGGTACGGATAAAAAGCCGGAGAATGGGATAGTAGAAATTCTAAAAGTAGTACTACCTCTACTGCCAGTATGGACTATGCTTCTGATGTTTGCAGTGATTTTTCAACAACCTGCAACATTTTTCACTAAACAAGGTATGACAATGAGGAGAAACATCGGAAGCAGCTTCCGAATTCCACCAGCTGCACTTCAGAGTTCAATCACAATATCTATAATCCTGCTTATGCCTCTTTACGACACGTGCTTTATCCCCTTCATTCGTGTTTTGACACGTAATGAGAAAGGCATCACTGTGATGCAGAGAATGGGAATAGGGATGTTTCTTTCAGTGATAGCAATGATAATTGCTGCTGTTACCGAAAGAAAAAGACTGGATATTGCCAGAAATGTAGGTACTTTAACTTCAGAATTCGAAGCTTTGCCAATGAGCATATTTTGGTTGCTGCCTCAGTACATCTTATTGGGAATTTCAGATATATTCACAGTTGTTGGTATGCAAGAGTTCTTTTACTCTGAAGTTCCGATAAATATGAGAACTTTAGGCATAGCTCTTTATACTAGTGTATTTGGTTGTGGTAGTTTCTTCAGCTCATTCCTTATAACAGTGATTGAACATTTGACAAGTTCAATAGGAGAAAAGCAGAACTGGTTCGCCGATGACATGAGCAGAGCCCGTTTAGACAACTATTACTGGTTTCTGGCATTGTCAAGTGCAGCCAGTTTTATGATGTTTATGGTTTTCTGTCGATTTTATAGAAGCAGGACAGTTAATTAGAGTGTTGGTAGTGACTGATAATTTGTTATTGTGGAATGTTGTGTTTTGCACATTCATTTTTCTAAGTAGAAAGTGAAGGTTCTGCACTTGTATATAAAGGAAGATATATCTAGT</genome_strand>
        <mrna_strand>GTTTTATACACATAACACGGATGGTGAAATTATTCATATCAAGTCCTTGGGAGGTCATATAGTTAAAGCTATTAGAGCGGCTACCTCAAGATTGACCTGTGGTGAGATTGCGGTACCAGATACCAACAAGTCAAAAGTTGTTGAGATCGA................................................................................................................................................................ACTTGAAAATGCACCACTCTGCCAACAAGATTCAGGCAGCACGGAGGGTACGGATAAAAAGCCGGAGAATGGGATAGTAGAAATTCTAAAAGTAGTACTACCTCTACTGCCAGTATGGACTATGCTTCTGATGTTTGCAGTGATTTTTCAACAACCTGCAACATTTTTCACTAAACAAGGTATGACAATGAGGAGAAACATCGGAAGCAGCTTCCGAATTCCACCAGCTGCACTTCAGAGTTCAATCACAATATCTATAATCCTGCTTATGCCTCTTTACGACACGTGCTTTATCCCCTTCATTCGTGTTTTGACACGTAATGAGACAGGCATCACTGTGATGCAGAGAATGGGAATAGGGATGTTTCTTTCAGTGATAGCAATGATAATTGCTGCTGTTACCGAAAGAAAAAGACTGGATATTGCCAGAAATGTAGGTACTTTAACTTCAGAATTCGAAGCTTTGCCAATGAGCATATTTTGGTTGCTGCCTCAGTACATCTTATTGGGAATTTCAGATATATTCACAGTTGTTGGTATGCAAGAGTTCTTTTACTCTGAAGTTCCGATAAATATGAGAACTTTAGGCATAGCTCTTTATACTAGTGTATTTGGTTGTGGTAGTTTCTTCAGCTCATTCCTTATAACAGTGATTGAACATTTGACAAGTTCAATAGGAGAAAAGCAGAACTGGTTCGCCGATGACATGAGCAGAGCCCGTTTAGACAACTATTACTGGTTTCTGGCATTGTCAAGTGCAGCCAGTTTTATGATGTTTATGGTTTTCTGTCGATTTTATAGAAGCAGGACAGTTAATTAGAGTGTTGGTAGTGACTGATAATTTGTTATTGTGGAATGTTGTGTTTTGCACATTCATTTTTCTAAGTAGAAAGTGAAGGTTCTGCACTTGTATATAAAGGAAGATATATCTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U603069" ref_strand="+" ref_description="SGN-U603069 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|110741844|dbj|BAE98864.1| (e_value=2e-56) oligopeptide; (*ATH) AT5G14940.1 (e_value=2e-58) | Symbol: None | proton-dependent oligopeptide transport (POT) family protein, contains Pfam profile: PF00854 POT family | chr5:4831751-4834315 REVERSE | Aliases: F2G14.60, F2G14_60; (*SWP) sp|P46032|PTR2_ARATH (e_value=1e-26) Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2; ">
      <seq>ataatttctcatggctggaggacaaagtccaagaaatctcaacaaaccatgtattctcctcatagtaatagcgggaatggagaggttttcattcaaaggggtggcatcaaatttagtgacatatctaacagacgtggccaaaatgagcaattcagctgcagcaaagatggttaacaattggtgtggtattacttctatgttgccattgctggttgctccactagctgattcttatttggaccgctacaccactgtattggcttcttcttctctatattttgccggtcttttagctttgacatcattggcattacaatggccatggacatccttggacaaatcgggcttctcttcatcgttatcatggtctctgcatttaatttcactaggccaagcgggttacaacccgtccttacaagcttttgcagcggaccaattggatgacgaagaagaattgccctgtacaaagaatgaccaaagctccaagaaaaagagcacatttttccactggtggtattttggcatatgttgtggcagtctacttggagtgtccattatgtcgtacatacaggacacgttaggatggggattaggtttcgccattccctcgattgccatgatagtgtcgattgtagtcttcagatttggcaacaggtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="100938" stop="98101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100638" g_stop="100574" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100573" i_stop="100492" i_length="82">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100491" g_stop="100274" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="283" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100273" i_stop="98777" i_length="1497">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98776" g_stop="98401" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="659" r_length="376" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-U603069" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U603069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100638" e_stop="100574"/>
          <exon e_start="100491" e_stop="100274"/>
          <exon e_start="98776" e_stop="98401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATTTCTCATGGCTGGAGGACAAAGTCCAAGAAATCTCAACAAACCATGTATTCTCCTCATAGGTAACTTTCATTTCATTTTTTCAGGTACGTAGGATTATACTGAATATATTGTTACTTAAATTTTGTGGTTTTAATTTGGCAGTAATAGCGGGAATGGAGAGGTTTTCATTCAAAGGGGTGGCATCAAATTTAGTGACATATCTAACAGACGTGGCCAAAATGAGCAATTCAGCTGCAGCAAAGATGGTTAACAATTGGTGTGGTATTACTTCTATGTTGCCATTGCTGGTTGCTCCACTAGCTGATTCTTATTTGGACCGCTACACCACTGTATTGGCTTCTTCTTCTCTATATTTTGCCGTAAGTTCCCTTTCAATTCGTCTCTAAAAAATCATAAGGTCTTATTGTGCGCAGTTTTACTCAGCATTTACCATAGAATTTCAACTGAATCTCCTTTATTAGAAAATTATCTAGTGTTAGGCAAAACTTTTTAATTGATGAATACAAATTGTTGAATCCATCTGAGTTTAACATTATATAAGCTTCTAGTGAAGTCTAGCTGCAAATATAGTGCTTAGGCTACAAGTTTGAATGGTAAATGTGACACATTTTACATTTTCTTCGAAATTTAGTTATTAGAATTTTTTAGTTTTTCCTTTCGTATGTCGTTGAAAAATATTCCAAACATCTCACAAATAGGAAAAGTTTTGAACACCGTACTAGGATTGAGTGTGCTTACAAGAATAGTATTAGTTTAGCATTTATTTTGTGTTTGATTATGAGTATAATTAGTTAGTATCTTATACATTTTGTATCAAAATCTTCATATTTTTTATCCTATAATGGATTTGGATGATAATGCTAGTATTGTTATCCTGGTTAACTCGGTTTGCACCGTCACAGAAGAGATATTTAGCGATAATAATTTATTTTTTTAGTATAGCACGAACCGAACAACCCCTTGATGCTTTGACAACTATGCTTTTATTTCATTTTAGTAGAGGACAAGTACCTATATCAATTGAAAAGACAAAGTATATTTAAATTTTTTAGTAATCAAAATCTTAAAAAAAAGATGACTTTTGCCACTATCGGGGAAGGGGTAAAATCTATGTTTGTAGATGGATTATCTACACGGAAATCATTAGTTAACAGCCACGGTGGACCGTAGACATGGAATGGAGCCTGAGTCATCACCCACCTCCTTTTTTTTTTAAAAAAAAAGAAACATTGCATTATAACCTAAATCTTGCACGTTATTAATACATTTTTAACAAATTCTGTTTTAAAGTATGTATAACAGTTTTGTTTCATTGTCAACTCATTTTACTTACGTTACTGCTGATTCAGGTGTCACTTCTTTTGTCGCCCATTTATATGTCTGCCTTAGTGCTTGTAAAAGATTTGCTACTGTTATGTAACTTATAAACAGTTGTTCCTCTTGGAAGAGGAGTTTAATCTGTCTAAGAAAATACATATAACATCTACAGATAGTAGTAGTAATAAAGAAGTTTCAATCGAATTTTTAATACTCCTTCCTTTCAAAAAGAATTACATATAGTTCGACTTAATATAGAATTTGATAAAATAGAGAAAACTTGTCAATGGTTTTTAATATAGAGTTTTTCAAAATGCTCTTTAATCGTATGGTCCTAAAAGTTGAAACTAGTTGTCAAAAAAAAAGAAGGAAAAGGGTCCGTCGTTTTTTAAACAGACTAAAAAGGAAAGAAAGATCATTCTTTTAGAAATGAAGGTAGTATGATTTATGAACTTAAAGATTAATATTATCGCCTCAATGAAAAAGGGAAATATAAAATATACTGAATGACCGACTCTTTTTGACAATCAAATAATCAGGGTCTTTTAGCTTTGACATCATTGGCATTACAATGGCCATGGACATCCTTGGACAAATCGGGCTTCTCTTCATCGTTATCATGGTCTCTGCATTTAATTTCACTAGGCCAAGCGGGTTACAACCCGTCCTTACAAGCTTTTGCAGCGGACCAATTGGATGACGAAGAAGAATTGCCCTGTACAAAGAATGACCAAAGCTCCAAGAAAAAGAGCACATTTTTCCACTGGTGGTATTTTGGCATATGTTGTGGCAGTCTACTTGGAGTGTCCATTATGTCGTACATACAGGACACGTTAGGATGGGGATTAGGTTTCGCCATTCCCTCGATTGCCATGATAGTGTCGATTGTAGTCTTCAGATTTGGCAACAGGTTTT</genome_strand>
        <mrna_strand>ATAATTTCTCATGGCTGGAGGACAAAGTCCAAGAAATCTCAACAAACCATGTATTCTCCTCATAG..................................................................................TAATAGCGGGAATGGAGAGGTTTTCATTCAAAGGGGTGGCATCAAATTTAGTGACATATCTAACAGACGTGGCCAAAATGAGCAATTCAGCTGCAGCAAAGATGGTTAACAATTGGTGTGGTATTACTTCTATGTTGCCATTGCTGGTTGCTCCACTAGCTGATTCTTATTTGGACCGCTACACCACTGTATTGGCTTCTTCTTCTCTATATTTTGCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTTTTAGCTTTGACATCATTGGCATTACAATGGCCATGGACATCCTTGGACAAATCGGGCTTCTCTTCATCGTTATCATGGTCTCTGCATTTAATTTCACTAGGCCAAGCGGGTTACAACCCGTCCTTACAAGCTTTTGCAGCGGACCAATTGGATGACGAAGAAGAATTGCCCTGTACAAAGAATGACCAAAGCTCCAAGAAAAAGAGCACATTTTTCCACTGGTGGTATTTTGGCATATGTTGTGGCAGTCTACTTGGAGTGTCCATTATGTCGTACATACAGGACACGTTAGGATGGGGATTAGGTTTCGCCATTCCCTCGATTGCCATGATAGTGTCGATTGTAGTCTTCAGATTTGGCAACAGGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U574416" ref_strand="+" ref_description="SGN-U574416 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|157345579|emb|CAO14877.1| (e_value=8e-123) unnamed; (*ATH) AT5G14950.1 (e_value=5e-120) | Symbol: None | glycosyl hydrolase family 38 protein, similar to alpha-mannosidase II SP:P27046 from (Mus musculus) | chr5:4837155-4841795 REVERSE | Aliases: F2G14.70, F2G14_70; (*SWP) sp|Q16706|MA2A1_HUMAN (e_value=4e-21) Alpha-mannosidase 2 OS=Homo sapiens GN=MAN2A1; ">
      <seq>gaatcatacaaggtggtgggattatgattatctcggagggccatttggtacaggaggtctattcttacccaaagacagcatgggacaagtctccaatttcccatagcacccgtatatataacggtcacaataccatacaggaacacattattgagaaggagtatcatgttgagcttcttggtcatgaactcaacgacagggaattgatagttaggtacaagactgatattgaaaacaaaaggattttctattctgatctaaatggattccaaatgagccgtagagaatcttatgataagatccctacacagggcaactattacccaataccttccgttgcatttatgcaaggactacatggagagcgcttctctgtccacactaggcagtctttgggtgttgcaagtctcaaggatggatggttagagataatgcttgacaggagattggtaagggatgatggacgtggtctaggccaacgagtgatggataaccgtgcaatgaatgttgttttacatatccttgtggagtctaatgttacagaagcaaaccaaactacaggtcctcatcctctaaatccgtctcttctatcgcatttggttggtgcccacctaaactatcctcttcatgtattcattgccaagaaatctgaggaaatctctgtacagccaccccctagatccttttctcccctggcagcttctttaccatgtgacttgcatattgtcaacttcaaggttcctcgtcctctcaagtatacccagcaacaatttgaagagcctaggtttgccttagtctttcagagacgacactgggattcttcttactgtagaaaggccaggtcagaatgttcaagtgtagctgatgtgcccgttaatctgttttacatgttcaagaatctggctgtgttgaatgcaaaggctacttctttaaatcttttgcatgatgacatagagatacttggctatggcgaccaacttggagatggagctcatgatgggcatgtcctcatttcacccatggaggtacaggcttacaagttggagctaaggccccactagtgaaggtatagatcacttgtatatccttttcccaactgaaactgaattagggtgtgctagttcaaggactaccgctgcaactctgttttccacattacaacttcaagatgtagtgtattttggagagatgaaggtagaaattgtcacagttgcggtttgcctagagggtttttgacattgtcagtttgaggcttgagggcttgagaattgttctagctgtaaccacagctacttcagaacacttccagagaagaaggttatgtcactgaaactactggtgctaacagaagatctcatcttatatgaaggagaagtgctttgcacatggttctcttccaagaagatgttaaagtaagtgggatttagaatggttaggtaatattataggcttaagttaaggttgttattagaatttttgttactattaagctaatgatgacacactgctagacagattgtatgcaaatgatgagtctttttgaaacatttgtttttgaaaaaagattttcacgggatggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="108215" stop="106038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107916" g_stop="106337" g_length="1580"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1580" r_length="1580" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-U574416" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U574416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107916" e_stop="106337"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCATACAAGGTGGTGGGATTATGATTATCTCGGAGGGCCATTTGGTACAGGAGGTCTATTCTTACCCAAAGACAGCATGGGACAAGTCTCCAATTTCCCATAGCACCCGTATATATAACGGTCACAATACCATACAGGAACACATTATTGAGAAGGAGTATCATGTTGAGCTTCTTGGTCATGAACTCAACGACAGGGAATTGATAGTTAGGTACAAGACTGATATTGAAAACAAAAGGATTTTCTATTCTGATCTAAATGGATTCCAAATGAGCCGTAGAGAATCTTATGATAAGATCCCTACACAGGGCAACTATTACCCAATACCTTCCGTTGCATTTATGCAAGGACTACATGGAGAGCGCTTCTCTGTCCACACTAGGCAGTCTTTGGGTGTTGCAAGTCTCAAGGATGGATGGTTAGAGATAATGCTTGACAGGAGATTGGTAAGGGATGATGGACGTGGTCTAGGCCAAGGAGTGATGGATAACCGTGCAATGAATGTTGTTTTACATATCCTTGTGGAGTCTAATGTTACAGAAGCAAACCAAACTACAGGTCCTCATCCTCTAAATCCGTCTCTTCTATCGCATTTGGTTGGTGCCCACCTAAACTATCCTCTTCATGTATTCATTGCCAAGAAATCTGAGGAAATCTCTGTACAGCCACCCCCTAGATCCTTTTCTCCCCTGGCAGCTTCTTTACCATGTGACTTGCATATTGTCAACTTCAAGGTTCCTCGTCCTCTCAAGTATACCCAGCAACAATTTGAAGAGCCTAGGTTTGCCTTAGTCTTTCAGAGACGACACTGGGATTCTTCTTACTGTAGAAAGGCCAGGTCAGAATGTTCAAGTGTAGCTGATGTGCCCGTTAATCTGTTTTACATGTTCAAGAATCTGGCTGTGTTGAATGCAAAGGCTACTTCTTTAAATCTTTTGCATGATGACATAGAGATACTTGGCTATGGCGACCACTTTGGAGATGGAGCTCATGATGGGCATGTCCTCATTTCACCCATGGAGGTACAGGCTTACAAGTTGGAGCTAAGGCCCCACTAGTGAAGGTATAGATCACTTGTATATCCTTTTCCCAACTGAAGCTGAATTAGGGTGTGCTAGTTCAAGGACTACCGCTGCAACTCTGTTTTCCACATTACAACTTCAAGATGTAGTGTATTTTGGAGAGATGAAGGTAGAAATTGTCACAGTTGCGGTTTGCCTAGAGGGTTTTTGACATTGTCAGTTTGAGGCTTGAGGGCTTGAGAATTGTTCTAGCTGTAACCACAGCTACTTCAGAACACTTCCAGAGAAGAAGGTTATGTCACTGAAACTACTGGTGCTAACAGAAGATCTCATCTTATATGAAGGAGAAGTGCTTTGCACATGGTTCTCTTCCAAGAAGATGTTAAAGTAAGTGGGATTTAGAATGGTTAGGTAATATTATAGGCTTAAGTTAAGGTTGTTATTAGAATTTTTGTTACTATTAAGCTAATGATGACACACTGCTAGACAGATTGTATGCAAATGATGAGTCTTTTTGAAACATTTGTTTTTGAAAAAAGATTTTCACGGGATGGA</genome_strand>
        <mrna_strand>GAATCATACAAGGTGGTGGGATTATGATTATCTCGGAGGGCCATTTGGTACAGGAGGTCTATTCTTACCCAAAGACAGCATGGGACAAGTCTCCAATTTCCCATAGCACCCGTATATATAACGGTCACAATACCATACAGGAACACATTATTGAGAAGGAGTATCATGTTGAGCTTCTTGGTCATGAACTCAACGACAGGGAATTGATAGTTAGGTACAAGACTGATATTGAAAACAAAAGGATTTTCTATTCTGATCTAAATGGATTCCAAATGAGCCGTAGAGAATCTTATGATAAGATCCCTACACAGGGCAACTATTACCCAATACCTTCCGTTGCATTTATGCAAGGACTACATGGAGAGCGCTTCTCTGTCCACACTAGGCAGTCTTTGGGTGTTGCAAGTCTCAAGGATGGATGGTTAGAGATAATGCTTGACAGGAGATTGGTAAGGGATGATGGACGTGGTCTAGGCCAACGAGTGATGGATAACCGTGCAATGAATGTTGTTTTACATATCCTTGTGGAGTCTAATGTTACAGAAGCAAACCAAACTACAGGTCCTCATCCTCTAAATCCGTCTCTTCTATCGCATTTGGTTGGTGCCCACCTAAACTATCCTCTTCATGTATTCATTGCCAAGAAATCTGAGGAAATCTCTGTACAGCCACCCCCTAGATCCTTTTCTCCCCTGGCAGCTTCTTTACCATGTGACTTGCATATTGTCAACTTCAAGGTTCCTCGTCCTCTCAAGTATACCCAGCAACAATTTGAAGAGCCTAGGTTTGCCTTAGTCTTTCAGAGACGACACTGGGATTCTTCTTACTGTAGAAAGGCCAGGTCAGAATGTTCAAGTGTAGCTGATGTGCCCGTTAATCTGTTTTACATGTTCAAGAATCTGGCTGTGTTGAATGCAAAGGCTACTTCTTTAAATCTTTTGCATGATGACATAGAGATACTTGGCTATGGCGACCAACTTGGAGATGGAGCTCATGATGGGCATGTCCTCATTTCACCCATGGAGGTACAGGCTTACAAGTTGGAGCTAAGGCCCCACTAGTGAAGGTATAGATCACTTGTATATCCTTTTCCCAACTGAAACTGAATTAGGGTGTGCTAGTTCAAGGACTACCGCTGCAACTCTGTTTTCCACATTACAACTTCAAGATGTAGTGTATTTTGGAGAGATGAAGGTAGAAATTGTCACAGTTGCGGTTTGCCTAGAGGGTTTTTGACATTGTCAGTTTGAGGCTTGAGGGCTTGAGAATTGTTCTAGCTGTAACCACAGCTACTTCAGAACACTTCCAGAGAAGAAGGTTATGTCACTGAAACTACTGGTGCTAACAGAAGATCTCATCTTATATGAAGGAGAAGTGCTTTGCACATGGTTCTCTTCCAAGAAGATGTTAAAGTAAGTGGGATTTAGAATGGTTAGGTAATATTATAGGCTTAAGTTAAGGTTGTTATTAGAATTTTTGTTACTATTAAGCTAATGATGACACACTGCTAGACAGATTGTATGCAAATGATGAGTCTTTTTGAAACATTTGTTTTTGAAAAAAGATTTTCACGGGATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U575777" ref_strand="+" ref_description="SGN-U575777 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157345579|emb|CAO14877.1| (e_value=3e-80) unnamed; (*ATH) AT5G14950.1 (e_value=3e-78) | Symbol: None | glycosyl hydrolase family 38 protein, similar to alpha-mannosidase II SP:P27046 from (Mus musculus) | chr5:4837155-4841795 REVERSE | Aliases: F2G14.70, F2G14_70; (*SWP) sp|P28494|MA2A1_RAT (e_value=5e-51) Alpha-mannosidase 2 (Fragment) OS=Rattus norvegicus GN=Man2a1; ">
      <seq>gggcgtgcacgaattcggcacgaggagacagtccaagcacatcctagatacccttgttgaaacacttccaaaggattcccggagaaaatttatatgggaagagatgtcctatctggagagatggtggagggatgcaaccaacgataagaaagaggcatttaccaatctagtgaggaatgggcagctagaaattgttggaggtggttgggtgatgaatgatgaggctaattcacattactttgcaattattgaacagattacagaaggaaatatgtggttgaatgagactataggtgtaattcctaaaaattcttgggccattgatcccttcggctattcaccaactatggcatatcttttgcggcgtatgggttttgagaacatgctaatacagaggactcattatgagttgaagaaggaactggctttaaaccagaatttggaatatgtgtggcgacagagctgggatgccgaaaaaagaactgatatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="111781" stop="109050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111479" g_stop="111434" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="73" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111433" i_stop="111100" i_length="334">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111099" g_stop="110950" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="223" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110949" i_stop="110622" i_length="328">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110621" g_stop="110589" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="256" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110588" i_stop="109586" i_length="1003">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109585" g_stop="109350" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="492" r_length="236" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-U575777" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U575777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111479" e_stop="111434"/>
          <exon e_start="111099" e_stop="110950"/>
          <exon e_start="110621" e_stop="110589"/>
          <exon e_start="109585" e_stop="109350"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGTCCAAGCACATCCTAGATACCCTTGTTGAAACACTTCCAAAGGTAATTTCAGCGTCAAGTCTAGTGTTAACTTTCATCATGTGATAAATTTAGATCGTTTGGATTGAACTACGATTTTTTAATTTGATCTGATCGCTTTAATTGATCTTGATTTATGTACGAGCTTAAACAATGCTATTTTTCGAGAACCCCTTTATTGATTATTGGAATGAAACTGGGACAAATGGAGCAGAATGATTACTGACATTAGTATAACAGGCCTGGACTAGTTTGAGATTGAGGCATATTAGTAGTGGTATTTGTTGTCATTGCTTATTATGGTATGGATGTTAAATTTCTGAATAACTTGTTGGTTGTTGAATTCTGTTTCTTTTAGGATTCCCGGAGAAAATTTATATGGGAAGAGATGTCCTATCTGGAGAGATGGTGGAGGGATGCAACCAACGATAAGAAAGAGGCATTTACCAATCTAGTGAGGAATGGGCAGCTAGAAATTGTTGGAGGTGGTTGGGTGATGAATGATGAGGTAAACCTCCATTGATGTTATACAGCATTGAAACAATAGAAAATGCGGATTAAAGAAAAAGTCGGAAGTGTTTAAATTTGACAGCTTATTATGAGGGAGACATGATTCTTCCTATAATTGAAGTCGCACTAAGCTTTTTCGGTGCATAATTTGGGTCAAATATTTAAAAGAAATGGCAGGATTATCAGAAAAATTCATTCAAATACAGATGTTTGGATAATTGTAATTGCTTTTGAAGGATTCAAATTTGTTCTGAATAAATGGAGCTTTGGCAATTTTATGCCATAATGGTTGACTTACGCCCTTTCAATTTTTCCCTTTTCTGCAGGCTAATTCACATTACTTTGCAATTATTGAACAGGTAAACAAGAAATTTTCTGTTTATTATTCACTGTCTTGGTATCTTTACATATTTACAAGATCATGCACGTAAGAATTGTATAAACTGAAAAAACAGAGATTATTTTCTCCATTTGGTTGTAATATAGGATATCTAAGCTCTTTTTGCTAATGATTTATAATTTACAACAGATTAGAATACTAGTGTTTGAAATCGAGACTGATATTTCTCTAATTTAGGGTAGTGCTATTGTGATTTTGTCACTCAAAATATTATGTTAGAATTTTTCTCAACATTTTTGTTGTATGGTTGCTTATTGCTGGAATACTTGACATGTAATTATTACTCATTAGATGTATACCGTAAGGAATAGCGTGACATGCAATATTTTAACTCTGGGGTAGATAATAGCTCATTTTGAGAAAATTAATGAGATATAGAAATTCTCATAGAGGCTAGAATTGGATATGAACTGGTAGGTTTTACTTTACATACAAGAACGACAACAACATACCCAATGTAAAATTGATATATTTTACTTTATATATTTATCAAAAAGGATACCGCTTACATATGAAACAGTCACAGCTTAAAACTTTTAAATTCATCCAATCCTTTTCTCTAAAAATATGTTACAGGAAATTTCCTATAGTTATTAATCATTAGATTAACCAATGGGGTATCAGTTATTACAGGCAACTTAATTCTTCTGGTATATGGTATTCATGACAGTTTCAGATTCATTTTTGTAGGTTTTATGTCGTTTGACTAACAATCAAGAAAAGATTCGTTGTTTGACTCTAGTTAGTCACTTGATTGTTGCTAATTTATTTGCCAATCTAACTTGATTTGGATCAACTTTTTTATTGAATTGGAGATGAAGTGTTTTTTCTACCTTGTTTTGCATTTCTTGGTGGTCATTCTGCTTTCTTCTCAATTCATATTGGTCTCATATTCATTTGCTGCTCATTTCATTTTGTACTATTCACTAATCTAGATCTCGATTTTTTGCATTTATGCTCAGATTACAGAAGGAAATATGTGGTTGAATGAGACTATAGGTGTAATTCCTAAAAATTCTTGGGCCATTGATCCCTTCGGCTATTCACCAACTATGGCATATCTTTTGCGGCGTATGGGTTTTGAGAACATGCTAATACAGAGGACTCATTATGAGTTGAAGAAGGAACTGGCTTTAAACCAGAATTTGGAATATGTGTGGCGACAGAGCTGGGATGCCGAAGAAAGAACTGATATTTT</genome_strand>
        <mrna_strand>ACAGTCCAAGCACATCCTAGATACCCTTGTTGAAACACTTCCAAAG..............................................................................................................................................................................................................................................................................................................................................GATTCCCGGAGAAAATTTATATGGGAAGAGATGTCCTATCTGGAGAGATGGTGGAGGGATGCAACCAACGATAAGAAAGAGGCATTTACCAATCTAGTGAGGAATGGGCAGCTAGAAATTGTTGGAGGTGGTTGGGTGATGAATGATGAG........................................................................................................................................................................................................................................................................................................................................GCTAATTCACATTACTTTGCAATTATTGAACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACAGAAGGAAATATGTGGTTGAATGAGACTATAGGTGTAATTCCTAAAAATTCTTGGGCCATTGATCCCTTCGGCTATTCACCAACTATGGCATATCTTTTGCGGCGTATGGGTTTTGAGAACATGCTAATACAGAGGACTCATTATGAGTTGAAGAAGGAACTGGCTTTAAACCAGAATTTGGAATATGTGTGGCGACAGAGCTGGGATGCCGAAAAAAGAACTGATATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U569024" ref_strand="+" ref_description="SGN-U569024 Tomato 200607#2 [14 ESTs aligned] (*GB) gi|83283979|gb|ABC01897.1| (e_value=4e-174) protein; (*ATH) AT2G30050.1 (e_value=9e-152) | Symbol: None | transducin family protein / WD-40 repeat family protein, similar to SEC13-related protein (SP:P55735) (Homo sapiens) | chr2:12831528-12833761 FORWARD | Aliases: T27E13.21, T27E13_21; (*SWP) sp|Q5XFW8|SEC13_RAT (e_value=3e-88) Protein SEC13 homolog OS=Rattus norvegicus GN=Sec13; ">
      <seq>cagttaaaacacttaaattatcaacccctctctctctctctctccagcttcgacgcgaagaagccattctcctctctatcgtgtttgcatccagaatttttctgttacagtagctgtgagatatcagtagcggcaacagaaaatgccagcccagaagattgaaactggtcacaatgacacagttcacgatgttactatggactattatggaaaacgtgtggctacagcatcttctgataccaccataaaaataactggtgtgagcaacaatgctgcttcgcaacaccttgctacgttgagtggccatacgggccctgtttggcaggctggctgggctcaccccaaatttggctcaatccttgcgtcctgttcctatgatggtaaggtaataatctggaaggaaggcaatcagaatgagtgggcacaagctcatgtttttagcgagcacaaatcatcggttaattccatctcctgggctcctcatgaacttgggctttgcttggcttgtggttcttctgatggtaatatttcagtgcacaccgccaggtcagatggtggttgggacactacaagaattgaccaagctcatccagttggggtaacatcagtttcatgggcgccttcaatggctcctggtgctttagttggtgcaggtgtgcttgaacctgttcaaaagctggcatctggtggatgtgataacactgttaaagtttggaagttgtataatggtgtttggaagatggattgcttccctgcacttcagatgcacactaactgggtgagagatgtagcttgggcaccaaacttgggacttccaaagtcaacaattgctagtgcttcagaggatggtacggttgtcatatggactgtgggaaaggagggagatcaccgggagggcaaggttctaaaagacttcaaatctcctgtttggagagtctcatggtctcttaccggaaacttgttggcagttgcagctggggataacaatgtcactttgtggaaagaagctgttgatggggagtggcaacaggcctccactgttgaccaatagagctggaacttgggaagtaatagaattcatgtttttgtgttctctttctaccattcagacctttttcctagctgaggcctgagtgagagttagccctttaattaaggactgtttactttgatttgattcttctcgtttactcagtatgcattcaatttcacttcagctatagacctttttctttctgcctgttttgtgtatgcctttttatgttgaattttcaatatacttggtgattaaatgtgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="113251" stop="117339"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113545" g_stop="113655" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113656" i_stop="115851" i_length="2196">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115852" g_stop="117039" g_length="1188"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="1298" r_length="1188" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-U569024" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1299</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U569024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113545" e_stop="113655"/>
          <exon e_start="115852" e_stop="117039"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTAAAAAACACTTAAATTATCAACCCCTCTCTCTCTCTCTCTCCAGCTTCGACGCGAAGAAGCCATTCTCCTCTCTATCGTGTTTGCATCCAGAATTTTTCTGTTACAGGTAAAACAATCCCTTTTTCCCCTTCATTTGCTTACAATTGAGATCTGTATTTGAGCATTATTTTTGCATTCGCTTTATTCGGTTTGGGTCTACCCGGTTTAAGATCCACGCAGAAATCCCAGATCTAGTTTGGCATGTATCTTTTTTATTTGTTTTGGTACCCTCAATGGATGTAATTTCGCCCATATGTATCGTTTTTAGCTAATACCGTTCTGTTTTATGTGTCTGATCTTCGGCGATCCGCGAATTGGTTGTTTATTATCCGGAAATCCTAATCTGAATTTTGGGGGAAAGCGGCTTAGAATCGGATCAGTTTCGATTCAATATTACATTAAGGTATGCCGGAGAAATGAATAGAAGTAGGAAATAGAAGATGAAAGATTGTTGCTTTTTATAAGACAATAGTGCAAACCATTTTTAACTGGGGTTAAACTGTCTTAGAACCTCGTGTGTTAGTAGTAAAGAATTCTGAAGTAGACACATCTTATTGAGCATGGAGAAGTATAAGGAATCCCAGTTTTGCTCTTGGGAATTGCTTGTTTCCCCTCCCCAAGTGTTTTATGGTATCTTTGTGTTAATTGATCGACTGTTTAAGTATCCTTGTCTTTATGGTATCTTTATGTTAATTGATTGACTGTTTATGTATCTTTGTCTTATGCGGTAAACTATAGAGTAGAGGTCTTGTAAGTACTGTAAGATCTTGTAGCAATTGTTTTTTGCTGAGGGCTTGAGTATTTATTAGGGAATAGATGTGGAAGCTTATAACTTGTTGGACTTTTGCATCTTCTGCAATAAGGGTTTTCTTTAAATGTTACCAATAGGATCAATTTCTCTGCCATATTATTGTCCACAAACAAGATATTCTATTTCTTCTCTTGGCTTAGTGTGGGAAGCTATTGAAACACTACCCAAAGAGATCTAGCAGAACAGATAAAAATGTGTCTATTTAGTTTTCTACAATTGATGAAAGCATAGGTAGATTTGAAGTCTAGTTATGTCCCATGAAGGAAATCTTCTATAATCTGCTATATTTATATCTATGAAAACCCTTTCTTATTTCATGACTCATGCTTATATAATAATATAAACCTTTATTGGAAGTCATCTCTAAAAAAATTTATCATTGTTATCCACTCTGCATAGTAGTCAATTTAGGAGAATCACTTATGTTGGAAAACATAGTTATATTATATTCAGGAGTATCCTAATGAATTTAGCTGATATTTCACAATAATATTATCTTTGATTGGATCGATGATCAATTTAGTATTTTCATCTCAATGGAGTACCTTTGCAGTTAATAGCAGTCTTGTCTGCAACGCAAGGACATTGGAACACTTACGAGTATTATGTTAAAAAAAGAGTGTAGAAGCCAACTCTAATATTTGTTACTAAAACTAGGAATCCTGATCTGGGCATCTTAACTAATTATTGGTGAGAGCAACAAGTAGAATACTGGGGTAGAGGAGAGGATTTGGATTTGCACTTTTGGGCCCATAGACTATCTAGTCATTAGCTAGTTTTAGTTATCAAGTACTTTGGTGTGTACTTTGTTGCCTTAAAAATCTCTTTCCATCTTAAAAGGGTTTATGAATTAAGCTACATTCTTTTCCTGTAGTAATTTCCCTATTATGTATAGATATATTGGATCAATTGAATGCTGAATATGAGTTATATGTTAGCTAATCCATATTGTGTTTAGATTCTTTGCCTCCTCAAATCAACTCCTATTACCTTTTAGTTACTTTTGACCTATTTAATCCTTCCCCCCTTCCCCTTTTGCAAATATAACATGTTCAGCAATAAACCATTTGTCTTTTCTTCATTATGCCTGCATTTATGATAAAGGGGAAGGTTTCTACTATATCTTTCTCTCTGGTGTATTGAAACGAACAAGCTCAAAACCATGACACGAGAAGCTCATAATATTATTTTCTCTAAAAAAATTGTATTTGCAAAGATTAATTCACCTGAAGGCTCTTATGTTATTACTTTGGCTTATTTACAATATATACATTTTTTTAAGTTTGTTTGTTGTTTGAGTTGCATTTCTGTTCTTAGGCTTTTGAACTGATTTTGGAAGAAGAGTCTCTCTTCTTTTCTAACCAAACAGGGGGTGGGGAATAGGTATTCTCTTCAATGTTTTATCTTTTTAACTGACATCTATACTAACATTGTATATGAGCATAAATGCAGTAGCTGTGAGATATCAGTAGCGGCAACAGAAAATGCCAGCCCAGAAGATTGAAACTGGTCACAATGACACAGTTCACGATGTTACTATGGACTATTATGGAAAACGTGTGGCTACAGCATCTTCTGATACCACCATAAAAATAACTGGTGTGAGCAACAATGCTGCTTCGCAACACCTTGCTACGTTGAGTGGCCATACGGGCCCTGTTTGGCAGGCTGGCTGGGCTCACCCCAAATTTGGCTCAATCCTTGCGTCCTGTTCCTATGATGGTAAGGTAATAATCTGGAAGGAAGGCAATCAGAATGAGTGGGCACAAGCTCATGTTTTTAGCGAGCACAAATCATCGGTTAATTCCATCTCCTGGGCTCCTCATGAACTTGGGCTTTGCTTGGCTTGTGGTTCTTCTGATGGTAATATTTCAGTGCACACCGCCAGGTCAGATGGTGGTTGGGACACTACAAGAATTGACCAAGCTCATCCAGTTGGGGTAACATCAGTTTCATGGGCGCCTTCAATGGCTCCTGGTGCTTTAGTTGGTGCAGGTGTGCTTGAACCTGTTCAAAAGCTGGCATCTGGTGGATGTGATAACACTGTTAAAGTTTGGAAGTTGTATAATGGTGTTTGGAAGATGGATTGCTTCCCTGCACTTCAGATGCACACTAACTGGGTGAGAGATGTAGCTTGGGCACCAAACTTGGGACTTCCAAAGTCAACAATTGCTAGTGCTTCAGAGGATGGTACGGTTGTCATATGGACTGTGGGAAAGGAGGGAGATCAGTGGGAGGGCAAGGTTCTAAAAGACTTCAAATCTCCTGTTTGGAGAGTCTCATGGTCTCTTACCGGAAACTTGTTGGCAGTTGCAGCTGGGGATAACAATGTCACTTTGTGGAAAGAAGCTGTTGATGGGGAGTGGCAACAGGCCTCCACTGTTGACCAATAGAGCTGGAACTTGGGAAGTAATAGAATTCATGTTTTTGTGTTCTCTTTCTACCATTCAGACCTTTTTCCTAGCTGAGGCCTGAGTGAGAGTTAGCCCTTTAATTAAGGACTGTTTACTTTGATTTGATTCTTCTCGTTTACTCAGTATGCATTCAATTTCACTTCAGCTATAGACCTTTTTCTTTCTGCCTGTTTTGTGTATGCCTTTTTATGTTGAATTTTCAATATACTTGGTGATTAAATGTGTC</genome_strand>
        <mrna_strand>CAGTTAA-AACACTTAAATTATCAACCCCTCTCTCTCTCTCTCTCCAGCTTCGACGCGAAGAAGCCATTCTCCTCTCTATCGTGTTTGCATCCAGAATTTTTCTGTTACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCTGTGAGATATCAGTAGCGGCAACAGAAAATGCCAGCCCAGAAGATTGAAACTGGTCACAATGACACAGTTCACGATGTTACTATGGACTATTATGGAAAACGTGTGGCTACAGCATCTTCTGATACCACCATAAAAATAACTGGTGTGAGCAACAATGCTGCTTCGCAACACCTTGCTACGTTGAGTGGCCATACGGGCCCTGTTTGGCAGGCTGGCTGGGCTCACCCCAAATTTGGCTCAATCCTTGCGTCCTGTTCCTATGATGGTAAGGTAATAATCTGGAAGGAAGGCAATCAGAATGAGTGGGCACAAGCTCATGTTTTTAGCGAGCACAAATCATCGGTTAATTCCATCTCCTGGGCTCCTCATGAACTTGGGCTTTGCTTGGCTTGTGGTTCTTCTGATGGTAATATTTCAGTGCACACCGCCAGGTCAGATGGTGGTTGGGACACTACAAGAATTGACCAAGCTCATCCAGTTGGGGTAACATCAGTTTCATGGGCGCCTTCAATGGCTCCTGGTGCTTTAGTTGGTGCAGGTGTGCTTGAACCTGTTCAAAAGCTGGCATCTGGTGGATGTGATAACACTGTTAAAGTTTGGAAGTTGTATAATGGTGTTTGGAAGATGGATTGCTTCCCTGCACTTCAGATGCACACTAACTGGGTGAGAGATGTAGCTTGGGCACCAAACTTGGGACTTCCAAAGTCAACAATTGCTAGTGCTTCAGAGGATGGTACGGTTGTCATATGGACTGTGGGAAAGGAGGGAGATCACCGGGAGGGCAAGGTTCTAAAAGACTTCAAATCTCCTGTTTGGAGAGTCTCATGGTCTCTTACCGGAAACTTGTTGGCAGTTGCAGCTGGGGATAACAATGTCACTTTGTGGAAAGAAGCTGTTGATGGGGAGTGGCAACAGGCCTCCACTGTTGACCAATAGAGCTGGAACTTGGGAAGTAATAGAATTCATGTTTTTGTGTTCTCTTTCTACCATTCAGACCTTTTTCCTAGCTGAGGCCTGAGTGAGAGTTAGCCCTTTAATTAAGGACTGTTTACTTTGATTTGATTCTTCTCGTTTACTCAGTATGCATTCAATTTCACTTCAGCTATAGACCTTTTTCTTTCTGCCTGTTTTGTGTATGCCTTTTTATGTTGAATTTTCAATATACTTGGTGATTAAATGTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U571268" ref_strand="+" ref_description="SGN-U571268 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|157345577|emb|CAO14875.1| (e_value=3e-64) unnamed; (*ATH) AT3G01330.1 (e_value=2e-55) | Symbol: None | transcription factor, putative / E2F-like repressor E2L2 (E2L2), identical to E2F-like repressor E2L2 (Arabidopsis thaliana) GI:20502506 | chr3:124456-126842 REVERSE | Aliases: T22N4.4, T22N4_4; (*SWP) sp|Q6S7F2|E2F7_MOUSE (e_value=2e-29) Transcription factor E2F7 OS=Mus musculus GN=E2f7; ">
      <seq>gctctctttcttcaaagcttgagcggtttatctcgaattttccgtagggttcttctctgatcgctttcaactttcgataacagagaaacctagcaatgtcatcgtcactccatactgaagattctcaatggaaaaaccctagcatttatagccgcaaggacaaatcgctcggtcttctttgctccaagtagaaatgtgtggaggaagctgatgatatgccttaaaaacataaaaacccaatttcttgaagctatgtgatcgggaaggggtggactccaccattggtttggacaatgctgcagatcaattaggtgtcgagaggcgtcgcatttatgatattgtcaatattttggaaagtgttggggttttgtcaagaaaagctaagaatcagtatagatggaatgggtataatgcaatttctaaggctgtagatttgcttaagaaagaaggactaaaagatctgtccactgtctcctccacttgccacaatgtttcaaatgtcatagcttgtaacaattcagatgttaaggaaaaaggagaaggcaagactgctggatcacataaaattgacaaccggaaggagaagtctttgatgattctagcacaaaattttgtaaagcttttccactgttctgatgttgacttgatatctcttgacaaggctgcatcagctttgcttggtgatgtccacgatccgatggctatgaagacaaagaccagacgcttgtatgatattgcaaatgtttttgtgtccatgaatcttattgagaagatacgcagcccagataatggaaaaccagtgtttaggtggatagcctggaaagaaaatctgaggagtgggtcccttgcatctgctaaatcagatgattcaacaaggagaacttttggggcagagatcacgaatacaactcccaaacgatacagggatgattcttcatctgatgtaatgtcaaatgggcaggtaaaaaggttgaaagttgcaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="120383" stop="124480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120682" g_stop="120868" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120869" i_stop="122479" i_length="1611">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122480" g_stop="122532" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="240" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="122533" i_stop="122608" i_length="76">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="122609" g_stop="122679" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="311" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="122680" i_stop="122794" i_length="115">
            <donor d_prob="0.404" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="122795" g_stop="122847" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="364" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="122848" i_stop="122918" i_length="71">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122919" g_stop="122996" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="442" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="122997" i_stop="123070" i_length="74">
            <donor d_prob="0.398" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="123071" g_stop="123127" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="499" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="123128" i_stop="123290" i_length="163">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="123291" g_stop="123360" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="569" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="123361" i_stop="123512" i_length="152">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="123513" g_stop="123580" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="637" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="123581" i_stop="123650" i_length="70">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="123651" g_stop="123723" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="710" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="123724" i_stop="123811" i_length="88">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="123812" g_stop="123873" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="711" r_stop="772" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="123874" i_stop="123966" i_length="93">
            <donor d_prob="0.744" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="123967" g_stop="124180" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="773" r_stop="986" r_length="214" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-U571268" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>986</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U571268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120682" e_stop="120868"/>
          <exon e_start="122480" e_stop="122532"/>
          <exon e_start="122609" e_stop="122679"/>
          <exon e_start="122795" e_stop="122847"/>
          <exon e_start="122919" e_stop="122996"/>
          <exon e_start="123071" e_stop="123127"/>
          <exon e_start="123291" e_stop="123360"/>
          <exon e_start="123513" e_stop="123580"/>
          <exon e_start="123651" e_stop="123723"/>
          <exon e_start="123812" e_stop="123873"/>
          <exon e_start="123967" e_stop="124180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTTTCTTCAAAGCTTGAGCGGTTTATCTCGAATTTTCCGTAGGGTTCTTCTCTGATCGCTTTCAACTTTCGATAACAGAGAAACCTAGCAATGTCATCGTCACTCCATACTGAAGATTCTCAATGGAAAAACCCTAGCATTTATAGCCGCAAGGACAAATCGCTCGGTCTTCTTTGCTCCAAGTAATCTCTCTCTTCTTTTCTTTTGCATTTGTGTTTTATGCCTGATTCATAGTCCTAAGCGTATCTACGCCACAACTCGATCTTAGAACGAGATGTTTATGTGAAATACGTAGTAAGTATACTAGTCGTGTTAGTGTAAGTGATTGATTGATGAGAAAATGTTGATGCTCGAGGAATTTTAGGGTTTTGAAATAATTTTGACTTTAAGATTCTGATTAAGGGTGACGAATTAAATAAATTCTATATGGAAACTAAAGAAAAATCCTTAAGAAGCACAAACAGATCCAAGATTTGAATTTATGGGTTGCCATAGCAGTTTCAAGTTGATATATCATATTAATTGAGTTCACGATTAATAAATATTTAGTGGATATACATAGAATTCTTGAAACTTTATACATTTATACTCCCTCTATTCCAAAATAAGCGGTGTTTTAGCCTTTTATTTTGTTTCCAAATAAGTGGTGCATTAGGATTTCAAAAAGGAATTGACCTTATTCTTCCATGTTTTAGGATTTTAAGAAGGAATTGATCTTATTCTTCCAAAATTACCCTTCTTTAGTAGTTTTACACTACTAAAGAATCATTTTTTTGGATGACAAGGGAAACTCGCAGTAGCTACCCTTTGGTTGTGCACTGCGCACACGGTAAAAATCTCGCTCCTATGCAATAGCTCGTAAATCACATAGGAGAGGTAACTCACACTAGACAAGTCCGGTGCAACGAGCTCAACCCAGAAGCAAACCCCTTGCTTCCGCTGGCAAGGGGTTTCAAACTTGAGACCTCCAATATGGAAGTCCCAAGCCCAAACCACTGGGCCATCCCGAAGGGGTACACCATTAAAGAATCATTTCTTTCTTCAAGGCATACATTTAATTAGAGGTAAGTTTCTAAGGCATTTAATTAGGGGTAAGTTTCTACTTATTTTTGAACTGAGGGAGTATACCAGAATTTATTAGGATTCCCGTGAACCCACACACAACATGGATCTGCCTTGGGGTCGAGAGTGCAAATGCTCATAGTTCGATTGAATTCAATTGAACGAACTCAAGTCATAGTCTCATAGACATTAGTTTCGTATACTCCCAACTCAAAAACACTCTATAAGGAATTAAACAAAACCAAGAGAAGTTTAATAGATATCATCATGACAATCAAAGAGAAATGCTCGGATTGGGAATGAAGGGTTTTATCCTCTCTTTTTTTTCCCATTCTTTCTTCATCTCCTCTCTTCGTGAGCTTCCTCAAGGGGTTCTCTTTAACTTGGAGCCGTAAATATGTTTATAACCTCCTTGGAGTCACTTTCTATCGGAACCTTCATGTTTATAGAATGCAAGGAAGTCCTTTTTTATAGCGACTTAGGGACTTCTGGCTGGCTTAATTTGTTGGAGAGACACGTTGTTGGTTTTCTAGCTCAGCAGCTCTGAGCAACTATTTTGCAAATCTTTAGGAAATTGAGCATGTCCTTTGTAGGAGTTTTATCATGTCTCAGGCTCTCAGCTCGTTGGAAAGTTTTGAATATTAGTTTTTGAAGTTGAGAGATTTTTTATCTGGTATATTGATTGTATGTTCTTTGTCAATTTTTTTTGTTTCCTTCATCTACAAAATTAGGTAGAAATGTGTGGAGGAAGCTGATGATATGCCTTAAAAACATAAAAACCCAAGTAAAAGATCTGTACTTTTTCACTATAAATCAGCATATCATTACTTTCTTGACCTGATAAATTTTGTACTATTCAGTTTCTTGAAGCTATGTGATCGGGAAGGGGTGGACTCCACCATTGGTTTGGACAATGCTGCAGATCAATTAGGTCTTTGCCCTGTCTTCTCATCTACAAGTCCTCATTTTGTCTTCCCAACCGTGTCAACACCAATACGCAGATTTCTTTTTGAATATTATCACACAGAATCTCTTTGTGGTTGTAGGTGTCGAGAGGCGTCGCATTTATGATATTGTCAATATTTTGGAAAGTGTTGGGGTAATTCTTTATCTTTGGATCTTCCTCTCATAATCTTTATATGATTGAATGACTAAGGCAATTTATTTCAGGTTTTGTCAAGAAAAGCTAAGAATCAGTATAGATGGAATGGGTATAATGCAATTTCTAAGGCTGTAGATTTGCTTAAGGTAGTTGATATGCATTTTTCCTTGTCTCATATGAACATGTGCTGGGAATTTGATATTATTTGCTTATTTTGTAGAAAGAAGGACTAAAAGATCTGTCCACTGTCTCCTCCACTTGCCACAATGTTTCAAATGTATGTACACCATGTTCTTTATTTGTCCACCCTTCACCACAATGAGCCATCTATGTAGGGTGATTTGGAGTGGGACTGTAATAGTTCAAATGTGGATATTCTCCCATTAGTTCACTCAGTTAGTTACTTTGGTTTGCTCTGCGATTGCACCTTCTTCTACTAGGTCATAGCTTGTAACAATTCAGATGTTAAGGAAAAAGGAGAAGGCAAGACTGCTGGATCACATAAAATTGGTAAGGTCTTCTCTGTAGGTGTGATGGTTGTTGTTTTATAATTGATTTTTTTCCCAGTGGAGGGAACATTATTCTGATTTTCTAAAGAACTGCTGGATGTCATATATCACATTCAATATTTAGTGAGACTAACTTGAGGTCTGATTATGTAGACAACCGGAAGGAGAAGTCTTTGATGATTCTAGCACAAAATTTTGTAAAGCTTTTCCACTGTTCTGATGTAAGTGGAGCCGTACAGTTTTTCTGACTAGTTGTCAACTGTTTGCAAGCTAATGCCTTGTCTTCTGTAGGTTGACTTGATATCTCTTGACAAGGCTGCATCAGCTTTGCTTGGTGATGTCCACGATCCGATGGCTATGAAGAGTAATTCATGTTCATAATATGTTGTTATGTTTAACTTATGATTGAAAATTTGACAGAAAACTTGTTATCTTTCATAAATATGTTGCAGCAAAGACCAGACGCTTGTATGATATTGCAAATGTTTTTGTGTCCATGAATCTTATTGAGAAGGTTGGTTATATAGTTTGAATGATCAGTAACTGCGTATTCTCAAAATAATGAAATAGAGGATTATTTCTTCTGATCTTTGCAATATATATGTAGATACGCAGCCCAGATAATGGAAAACCAGTGTTTAGGTGGATAGCCTGGAAAGAAAATCTGAGGAGTGGGTCCCTTGCATCTGCTAAATCAGATGATTCAACAAGGAGAACTTTTGGGGCAGAGATCACGAATACAACTCCCAAACGATACAGGGATGATTCTTCATCTGATGTAATGTCAAATGGGCAGGTAAAAAGGTTGAAAGTTGCAAAAG</genome_strand>
        <mrna_strand>GCTCTCTTTCTTCAAAGCTTGAGCGGTTTATCTCGAATTTTCCGTAGGGTTCTTCTCTGATCGCTTTCAACTTTCGATAACAGAGAAACCTAGCAATGTCATCGTCACTCCATACTGAAGATTCTCAATGGAAAAACCCTAGCATTTATAGCCGCAAGGACAAATCGCTCGGTCTTCTTTGCTCCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAAATGTGTGGAGGAAGCTGATGATATGCCTTAAAAACATAAAAACCCAA............................................................................TTTCTTGAAGCTATGTGATCGGGAAGGGGTGGACTCCACCATTGGTTTGGACAATGCTGCAGATCAATTAG...................................................................................................................GTGTCGAGAGGCGTCGCATTTATGATATTGTCAATATTTTGGAAAGTGTTGGG.......................................................................GTTTTGTCAAGAAAAGCTAAGAATCAGTATAGATGGAATGGGTATAATGCAATTTCTAAGGCTGTAGATTTGCTTAAG..........................................................................AAAGAAGGACTAAAAGATCTGTCCACTGTCTCCTCCACTTGCCACAATGTTTCAAAT...................................................................................................................................................................GTCATAGCTTGTAACAATTCAGATGTTAAGGAAAAAGGAGAAGGCAAGACTGCTGGATCACATAAAATTG........................................................................................................................................................ACAACCGGAAGGAGAAGTCTTTGATGATTCTAGCACAAAATTTTGTAAAGCTTTTCCACTGTTCTGAT......................................................................GTTGACTTGATATCTCTTGACAAGGCTGCATCAGCTTTGCTTGGTGATGTCCACGATCCGATGGCTATGAAGA........................................................................................CAAAGACCAGACGCTTGTATGATATTGCAAATGTTTTTGTGTCCATGAATCTTATTGAGAAG.............................................................................................ATACGCAGCCCAGATAATGGAAAACCAGTGTTTAGGTGGATAGCCTGGAAAGAAAATCTGAGGAGTGGGTCCCTTGCATCTGCTAAATCAGATGATTCAACAAGGAGAACTTTTGGGGCAGAGATCACGAATACAACTCCCAAACGATACAGGGATGATTCTTCATCTGATGTAATGTCAAATGGGCAGGTAAAAAGGTTGAAAGTTGCAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U576939" ref_strand="+" ref_description="SGN-U576939 Tomato 200607#2 [17 ESTs aligned] (*GB) gi|157354112|emb|CAO46679.1| (e_value=8e-41) unnamed; (*ATH) AT3G48140.1 (e_value=9e-33) | Symbol: None | senescence-associated protein, putative, similar to B12D protein (Ipomoea batatas) GB:AAD22104 | chr3:17789385-17790534 FORWARD | Aliases: T24C20.20; ">
      <seq>cggccgaattgaggtcatcatcatccacagtctcaaaaagatcgtaaagtttgcatgttctttcccccgtttttctatggcttcttccaccattaatcgatggctgaggcctgaggtgtatccactttttgcagccgtaggcgttgctgtagggatctgtggaatgcaattggttcgtaatatctgcaccaaccctgaagtcagggtgacaaaggaaaacagggcagcaggagtgctggataatttttcagaaggggagaaatattcagagcatgctctaaggaagtttgttcgaaacaagtctccggagattatgccatcaatcaacggcttcttcagtaatccaaactaatgtcctagtcaagtttaatttggattaacaccattattctttgtcttcttttccattgaatgagatagacatgaaatgcatttttctggccctaaaagatatttgaaagaaacttgaataaatgtaatcagaaccacaagttcccctctcttttgacagggcacatcttttcatatgatattgaactgttgttttccggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="135673" stop="133203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135369" g_stop="135268" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="115" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="135267" i_stop="135080" i_length="188">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="135079" g_stop="134991" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="204" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134990" i_stop="133852" i_length="1139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="133851" g_stop="133503" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="553" r_length="349" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-U576939" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U576939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135369" e_stop="135268"/>
          <exon e_start="135079" e_stop="134991"/>
          <exon e_start="133851" e_stop="133503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATCATCATCAACAGTCTCAAAAAGATCGTAAAGTTTGCATGTTCTTTCCCCCGTTTTTCTATGGCTTCTTCCACCATTAATCGATGGCTGAGGCCTGAGGTATGTTTTATTCTTCCGCCATAGATCTCCTCCCTTCTATTTCCTTATTATAAAGATTTTTTAAAAACTTCCTATGATATCGGCGATTTTTAATGGATTATTGGGGGCTTTTCTTGTTTAAGGGTTGAATGTTGGTTTAGCGATTAGATCTGAGTGATTATATATCTTCTATATTTGTGGTGGCGCAGGTGTATCCACTTTTTGCAGCCGTAGGCGTTGCTGTAGGGATCTGTGGAATGCAATTGGTTCGTAATATCTGCACCAACCCTGAAGTCAGGTAACCTCTTCATATCCGTTTATGCCTTGTCTAATTTGTGTTAATTTGATTTAGCCAGCTTTAATTGGATACTTTGTCGAATTAAAGATTGTCACGTCAATTCGAGAACTAGATCGGGCATGTATGTAGAGAATTCATGTGATAGCTTAGAATTTTAGGCTTAGTTGATCGATTGATTTAACAATCCAAGGTAACTAACTCCATTGGTAGGCTGCCCAATCCACCACCCTGTAATCTGTATATTATAGGTCGAGCCATTTTCCCTTTTCATATAAACATACATATTTTTTAAAAAAGAAAACGAGTGATTGATCTACCCTTATTTATCTTCCTAAAAACTGCATGCCTCCTTTATGTTTATTGTTTGTTTAGATGCTGATGAAAGGATATATGTATATGTTTGGGTTAGAGATGGATTCAACATTTGAATGGATTCAATTTTTAAGATTTCCTGTATTGACTTGCTTGTTTCGAATTCTATTATTATGGTACTTATTTAGTGAATTTAAAACCCACATACTTCGAGCCAACTAAAGCTACTGGATTTGACTGGACCAATTAGTAATACATAGATCCACCACTGATTGTGATCTACATGAGGATTCTTTGACAATCAATTATTCGATAAAGAAGGAAAGCCTCTAAGAGTTTAACTGGTATGACTTTAAAGCAACATATGAGGTTACAATTGCGAGAAACGGAAGAGGGAAAACCTGGTAAAATTTCTCTAATTTTGGATCAATTTTGTTTGATTCTTTGTTGGTGGTACAAATCAAGTCAGTTGATCAACTGGTATAACATCTGCTAGGCAATGAAACCGCCCATATTTAAGTTGTGTTGTACTAGATTGCATCTTTTTTAGCTGTGGCAGCGTTTGGAATATTATGAAGGAGATTATTGAAAAGTGTAAAAGCCACACCCGAGATTTAGAACACGTGACCGAATGCAATTTTTGAGCGACATTTGCTACTACACTAGATACGATTCCAAATTTATTTATTTGACATAAGTTTTACCCTATTTGCACGATATTATCTTTTGATAGGTGATTCAGTTGACCCCTACTGAACTCTCCACATGCAAGTTGCATCCACCCCCACACCCTACTGACCGTGTCTTGATGTTTGCAAAATTCTCAGGGTGACAAAGGAAAACAGGGCAGCAGGAGTGCTGGATAATTTTTCAGAAGGGGAGAAATATTCAGAGCATGCTCTAAGGAAGTTTGTTCGAAACAAGTCTCCGGAGATTATGCCATCAATCAACGGCTTCTTCAGTAATCCAAACTAATGTCCTAGTCAAGTTTAATTTGGATTAACACCATTATTCTTTGTCTTCTTTTCCATTGAATGAGATAGACATGAAATGCATTTTTCTGGCCCTAAAAGATATTTGAAAGAAACTTGAATAAATGTAATCAGAACCACAAGTTCCCCTCTCTTTTGACAGGGCACATCTTTTCATATGATATTGAACTGTTGTTTTCCGGAT</genome_strand>
        <mrna_strand>GTCATCATCATCCACAGTCTCAAAAAGATCGTAAAGTTTGCATGTTCTTTCCCCCGTTTTTCTATGGCTTCTTCCACCATTAATCGATGGCTGAGGCCTGAG............................................................................................................................................................................................GTGTATCCACTTTTTGCAGCCGTAGGCGTTGCTGTAGGGATCTGTGGAATGCAATTGGTTCGTAATATCTGCACCAACCCTGAAGTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGACAAAGGAAAACAGGGCAGCAGGAGTGCTGGATAATTTTTCAGAAGGGGAGAAATATTCAGAGCATGCTCTAAGGAAGTTTGTTCGAAACAAGTCTCCGGAGATTATGCCATCAATCAACGGCTTCTTCAGTAATCCAAACTAATGTCCTAGTCAAGTTTAATTTGGATTAACACCATTATTCTTTGTCTTCTTTTCCATTGAATGAGATAGACATGAAATGCATTTTTCTGGCCCTAAAAGATATTTGAAAGAAACTTGAATAAATGTAATCAGAACCACAAGTTCCCCTCTCTTTTGACAGGGCACATCTTTTCATATGATATTGAACTGTTGTTTTCCGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U588350" ref_strand="+" ref_description="SGN-U588350 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157345576|emb|CAO14874.1| (e_value=1e-38) unnamed; (*ATH) AT5G14970.1 (e_value=2e-32) | Symbol: None | expressed protein | chr5:4847281-4848868 FORWARD | Aliases: F2G14.90, F2G14_90; ">
      <seq>cggcgtacgtccgttaactgccttatttccggcgtagacggcggcggtgtttcggacgactttgtttccaccaggaaatccggtttcggcagtgaattctctgttattgccaatatgctcaagcgaattgaaccgttggacacttctgttatatctaaaggcgtttctgattcagctaaggactcaatgaagcagaccatttctactatgttaggcttgctcccttcagatcaattctcaatcactgttcggttttccaaacacgctctcgatcgcctcattgtttcttctatcattaccgggtaccttatctcttcattttcatatatgcacaaagttgaaaatagtgattgttaatttgttaaagttgtggatcaatctgaataagttatggtgtattcgattggtgttgatttgtggtggtaggtatacgttgtggaatgcggagtacaggatatccttgatgaggaattttgatatcccatcagataatttgaaaggcttcaactcaacggaagaggatgtgaactctggctcaaagagcgaggggatagaggggggagaacgcggagttggtgtaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="139979" stop="141162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140279" g_stop="140862" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="584" r_length="584" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-U588350" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U588350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140279" e_stop="140862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCGTACGTCCGTTAACTGCCTTATTTCCGGCGTAGACGGCGGCGGTGTTTCGGACGACTTTGTTTCCACCAGGAAATCCGGTTTCGGCAGTGAATTCTCTGTTATTGCCAATATGCTCAAGCGAATTGAACCGTTGGACACTTCTGTTATATCTAAAGGCGTTTCTGATTCAGCTAAGGACTCAATGAAGCAGACCATTTCTACTATGTTAGGCTTGCTCCCTTCAGATCAATTCTCAATCACTGTTCGGTTTTCCAAACACGCTCTCGATCGCCTCATTGTTTCTTCTATCATTACCGGGTACCTTATCTCTTCATTTTCATATATGCACAAAGTTGAAAATAGTGATTGTTAATTTGTTAAAGTTGTGGATCAATCTGAATAAGTTATGGTGTATTCGATTGGTGTTGATTTGTGGTGGTAGGTATACGTTGTGGAATGCGGAGTACAGGATATCCTTGATGAGGAATTTTGATATCCCATCAGATAATTTGAAAGGCTTCAACTCAACGGAAGAGGATGTGAACTCTGGCTCAAAGAGCGAGGGGATAGAGGGGGGAGAACGCGGAGTTGGTGTAAATA</genome_strand>
        <mrna_strand>CGGCGTACGTCCGTTAACTGCCTTATTTCCGGCGTAGACGGCGGCGGTGTTTCGGACGACTTTGTTTCCACCAGGAAATCCGGTTTCGGCAGTGAATTCTCTGTTATTGCCAATATGCTCAAGCGAATTGAACCGTTGGACACTTCTGTTATATCTAAAGGCGTTTCTGATTCAGCTAAGGACTCAATGAAGCAGACCATTTCTACTATGTTAGGCTTGCTCCCTTCAGATCAATTCTCAATCACTGTTCGGTTTTCCAAACACGCTCTCGATCGCCTCATTGTTTCTTCTATCATTACCGGGTACCTTATCTCTTCATTTTCATATATGCACAAAGTTGAAAATAGTGATTGTTAATTTGTTAAAGTTGTGGATCAATCTGAATAAGTTATGGTGTATTCGATTGGTGTTGATTTGTGGTGGTAGGTATACGTTGTGGAATGCGGAGTACAGGATATCCTTGATGAGGAATTTTGATATCCCATCAGATAATTTGAAAGGCTTCAACTCAACGGAAGAGGATGTGAACTCTGGCTCAAAGAGCGAGGGGATAGAGGGGGGAGAACGCGGAGTTGGTGTAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>34</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="2020" PGL_stop="2480"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2020" e_stop="2480"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2020" e_stop="2480" e_length="461"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2020" stop="2480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U602385" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGATTCGAAACTTGTCTGCATGCAGGTCTTCTTTCTCTACTTCTTACAGCTGTTTTTTTTAGTTTTATTCATTTTTAATTTGCTTTTAGTAAATTAGTCAATTTTTCTGCTTTCTCACTTTAAATATCCTGTCAAATTTGTATATCTTCAGTAATTTATTGAAATCACTGATTTCTAAAACAATTGCTGAAGAGTCTTTTCAATTGAGTGTCAGAGACATATTCATTGAACTGGGCTACACCAACAGAAAGTGGACCGTTCAATATAAGGAGACACATGGTTTTTAACCAACTAGTTTTTGGACATGTACATCCCAAATTAACTAGAATATGATTTTGCATAATCACATAAAATTATTGAAAAATATTTTTGAGTAACAAAACACACATTAATTAAGATTCATGAATGTGATTCTTCATTTGGGACTTCATGGTTGAGCCCCCCTCCCCCCCCCCCCCCCC</gDNA_template>
            <first_frame> R  F  E  T  C  L  H  A  G  L  L  S  L  L  L  T  A  V  F  F  S  F  I  H  F  *  F  A  F  S  K  L  V  N  F  S  A  F  S  L  *  I  S  C  Q  I  C  I  S  S  V  I  Y  *  N  H  *  F  L  K  Q  L  L  K  S  L  F  N  *  V  S  E  T  Y  S  L  N  W  A  T  P  T  E  S  G  P  F  N  I  R  R  H  M  V  F  N  Q  L  V  F  G  H  V  H  P  K  L  T  R  I  *  F  C  I  I  T  *  N  Y  *  K  I  F  L  S  N  K  T  H  I  N  *  D  S  *  M  *  F  F  I  W  D  F  M  V  E  P  P  S  P  P  P  P   </first_frame>
            <second_frame>  D  S  K  L  V  C  M  Q  V  F  F  L  Y  F  L  Q  L  F  F  L  V  L  F  I  F  N  L  L  L  V  N  *  S  I  F  L  L  S  H  F  K  Y  P  V  K  F  V  Y  L  Q  *  F  I  E  I  T  D  F  *  N  N  C  *  R  V  F  S  I  E  C  Q  R  H  I  H  *  T  G  L  H  Q  Q  K  V  D  R  S  I  *  G  D  T  W  F  L  T  N  *  F  L  D  M  Y  I  P  N  *  L  E  Y  D  F  A  *  S  H  K  I  I  E  K  Y  F  *  V  T  K  H  T  L  I  K  I  H  E  C  D  S  S  F  G  T  S  W  L  S  P  P  P  P  P  P  P  </second_frame>
            <third_frame>   I  R  N  L  S  A  C  R  S  S  F  S  T  S  Y  S  C  F  F  *  F  Y  S  F  L  I  C  F  *  *  I  S  Q  F  F  C  F  L  T  L  N  I  L  S  N  L  Y  I  F  S  N  L  L  K  S  L  I  S  K  T  I  A  E  E  S  F  Q  L  S  V  R  D  I  F  I  E  L  G  Y  T  N  R  K  W  T  V  Q  Y  K  E  T  H  G  F  *  P  T  S  F  W  T  C  T  S  Q  I  N  *  N  M  I  L  H  N  H  I  K  L  L  K  N  I  F  E  *  Q  N  T  H  *  L  R  F  M  N  V  I  L  H  L  G  L  H  G  *  A  P  L  P  P  P  P  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2112" stop="2306"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISQFFCFLTLNILSNLYIFSNLLKSLISKTIAEESFQLSVRDIFIELGYTNRKWTVQYKETHGF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="4744" PGL_stop="11919"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4744" e_stop="4783"/>
            <exon e_start="5074" e_stop="5223"/>
            <exon e_start="5445" e_stop="5603"/>
            <exon e_start="7418" e_stop="7477"/>
            <exon e_start="8074" e_stop="8172"/>
            <exon e_start="9476" e_stop="9583"/>
            <exon e_start="9663" e_stop="9806"/>
            <exon e_start="10985" e_stop="11092"/>
            <exon e_start="11522" e_stop="11573"/>
            <exon e_start="11641" e_stop="11919"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.975"/>
          <exon-intron don_prob="0.893" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.767" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.740" acc_prob="0.917" e_score="0.991"/>
          <exon-intron don_prob="0.616" acc_prob="0.849" e_score="1.000"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="4744" e_stop="4783" e_length="40"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="4784" i_stop="5073" i_length="290"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5074" e_stop="5223" e_length="150"/>
          </exon>
          <intron i_serial="2" don_prob="0.893" acc_prob="1.000">
            <gDNA_intron_boundary i_start="5224" i_stop="5444" i_length="221"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5445" e_stop="5603" e_length="159"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="5604" i_stop="7417" i_length="1814"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7418" e_stop="7477" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.961" acc_prob="0.998">
            <gDNA_intron_boundary i_start="7478" i_stop="8073" i_length="596"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="8074" e_stop="8172" e_length="99"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.767">
            <gDNA_intron_boundary i_start="8173" i_stop="9475" i_length="1303"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="9476" e_stop="9583" e_length="108"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="9584" i_stop="9662" i_length="79"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="9663" e_stop="9806" e_length="144"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.979">
            <gDNA_intron_boundary i_start="9807" i_stop="10984" i_length="1178"/>
          </intron>
          <exon e_serial="8" e_score="0.991">
            <gDNA_exon_boundary e_start="10985" e_stop="11092" e_length="108"/>
          </exon>
          <intron i_serial="8" don_prob="0.740" acc_prob="0.917">
            <gDNA_intron_boundary i_start="11093" i_stop="11521" i_length="429"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="11522" e_stop="11573" e_length="52"/>
          </exon>
          <intron i_serial="9" don_prob="0.616" acc_prob="0.849">
            <gDNA_intron_boundary i_start="11574" i_stop="11640" i_length="67"/>
          </intron>
          <exon e_serial="10" e_score="0.975">
            <gDNA_exon_boundary e_start="11641" e_stop="11919" e_length="279"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4744" stop="4783"/>
              <exon start="5074" stop="5223"/>
              <exon start="5445" stop="5603"/>
              <exon start="7418" stop="7477"/>
              <exon start="8074" stop="8172"/>
              <exon start="9476" stop="9583"/>
              <exon start="9663" stop="9806"/>
              <exon start="10985" stop="11092"/>
              <exon start="11522" stop="11573"/>
              <exon start="11641" stop="11919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567594" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCAAGTCCCAACTACTCCCTTCACTCTCTTCCTCTGCTCG : TGGTGGAGTAACTTGCAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCT : GTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGG : CAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAG : ATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGT : CCCCCCTACATACAGTGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCTGCAGATGGAAGTATG : GTTTTCCGGTTGCGTGAAGGTGTGGGTGTGGCAACTAACAACGTTGCTGAATATAGAGGTGTAATCTTAGGGCTAAAATATGCTCTTGAGAAAGGTTTCAAACATGTAAAAGTTAAGGGTGACTCAAAACTCGTCTGCATGCAG : ACTCAAGGAATCTGGAAATGCAAGAACCAGAACATGGCTGAGCTATCCAAGATTGTGAAAGAGCTTAAAGATCATTTTGTATCATTCCAGATCAACCATATTTACAGA : GAATTCAACACTGAAGCTGATGCCCAGGCAAATTTAGCCGTGTATCTTAAGA : GTGGTGAATTTCAAGTGGAATGTGACAAGAAAACAACTTAATATTGTGAAGTCACCAACTACCCCAACTTGCTTGGGGGATTTTGTGAAGGATGAATGACACTCAAGACCGATGCATAATGGATCTTCTCTGGTCTTGTTTTTTTTTTTTGTAGATATATAATCTGAATCATCTGGATTAGAGAAACTTCTGTTTAGGGGCCTGCTCGAATCCATTATTCTCTTCTCACTTGCAATGGAAATTAATTAGTTCTCTAAAGCTAACTATTCTAGCACTTTG</gDNA_template>
            <first_frame> P  S  P  N  Y  S  L  H  S  L  P  L  L   : V  V  E  *  L  A  K  P  S  K  R  V  G  V  G  H  I  N  G  G  R  K  G  C  F  L  C  R  A  *  R  G  C  D  R  C  L  *  E  P  Q  *  F  T  S  S  A  T  I  F   : C  W  *  T  S  Y  K  C  L  *  R  V  S  P  G  *  A  I  R  R  V  F  G  I  S  W  T  Q  K  C  N  V  F  Y  G  F  Q  *  C  S  R  *  S  L  W  D  T  R  P  M  P  F  S   : A  T  W  L  F  E  R  *  N  Y  G  E  E  S  S  G  E  E  D  A   : D  G  G  G  C  I  S  F  V  F  S  R  W  S  A  K  T  C  H  I  R  Q  L  P  R  N  S  P  D  F  V  I  L   : S  P  L  H  T  V  F  M  H  S  *  V  *  W  G  F  K  G  E  S  W  T  S  W  C  W  C  R  A  A  C  C  R  W  K  Y   : G  F  P  V  A  *  R  C  G  C  G  N  *  Q  R  C  *  I  *  R  C  N  L  R  A  K  I  C  S  *  E  R  F  Q  T  C  K  S  *  G  *  L  K  T  R  L  H  A   : D  S  R  N  L  E  M  Q  E  P  E  H  G  *  A  I  Q  D  C  E  R  A  *  R  S  F  C  I  I  P  D  Q  P  Y  L  Q   : R  I  Q  H  *  S  *  C  P  G  K  F  S  R  V  S  *  E :   W  *  I  S  S  G  M  *  Q  E  N  N  L  I  L  *  S  H  Q  L  P  Q  L  A  W  G  I  L  *  R  M  N  D  T  Q  D  R  C  I  M  D  L  L  W  S  C  F  F  F  L  *  I  Y  N  L  N  H  L  D  *  R  N  F  C  L  G  A  C  S  N  P  L  F  S  S  H  L  Q  W  K  L  I  S  S  L  K  L  T  I  L  A  L   </first_frame>
            <second_frame>  Q  V  P  T  T  P  F  T  L  F  L  C  S  :  W  W  S  N  L  Q  S  Q  V  N  A  L  E  L  D  T  *  M  G  D  E  K  D  A  F  Y  V  V  H  K  G  D  V  I  A  V  Y  K  N  L  S  D  L  Q  A  L  L  R  S  S  :  V  G  E  P  A  I  S  V  Y  K  G  Y  H  L  A  K  Q  S  E  E  Y  L  A  S  H  G  L  K  N  A  M  Y  S  M  D  F  S  D  V  R  D  D  L  F  G  I  L  V  P  C  P  F  R  :  Q  P  G  S  S  K  D  K  I  M  G  K  N  L  P  E  K  R  M  Q  :  M  E  V  V  A  S  P  S  F  S  A  A  G  Q  Q  K  H  A  T  L  D  N  C  L  E  I  P  P  I  S  S  Y  C  :  P  P  Y  I  Q  C  S  C  I  L  E  F  D  G  A  S  K  G  N  P  G  P  A  G  A  G  A  V  L  R  A  A  D  G  S  M  :  V  F  R  L  R  E  G  V  G  V  A  T  N  N  V  A  E  Y  R  G  V  I  L  G  L  K  Y  A  L  E  K  G  F  K  H  V  K  V  K  G  D  S  K  L  V  C  M  Q  :  T  Q  G  I  W  K  C  K  N  Q  N  M  A  E  L  S  K  I  V  K  E  L  K  D  H  F  V  S  F  Q  I  N  H  I  Y  R  :  E  F  N  T  E  A  D  A  Q  A  N  L  A  V  Y  L  K   : S  G  E  F  Q  V  E  C  D  K  K  T  T  *  Y  C  E  V  T  N  Y  P  N  L  L  G  G  F  C  E  G  *  M  T  L  K  T  D  A  *  W  I  F  S  G  L  V  F  F  F  C  R  Y  I  I  *  I  I  W  I  R  E  T  S  V  *  G  P  A  R  I  H  Y  S  L  L  T  C  N  G  N  *  L  V  L  *  S  *  L  F  *  H  F  </second_frame>
            <third_frame>   K  S  Q  L  L  P  S  L  S  S  S  A  R :   G  G  V  T  C  K  A  K  *  T  R  W  S  W  T  H  K  W  G  T  K  R  M  L  F  M  S  C  I  K  G  M  *  S  L  S  I  R  T  S  V  I  Y  K  L  C  Y  D  L  L :   L  V  N  Q  L  *  V  F  I  K  G  I  T  W  L  S  N  Q  K  S  I  W  H  L  M  D  S  K  M  Q  C  I  L  W  I  S  V  M  F  E  M  I  S  L  G  Y  S  S  H  A  L  F  G :   N  L  A  L  R  K  I  K  L  W  G  R  I  F  R  R  R  G  C  R :   W  R  W  L  H  L  L  R  F  Q  P  L  V  S  K  N  M  P  H  *  T  I  A  *  K  F  P  R  F  R  H  I  V :   P  P  T  Y  S  V  H  A  F  L  S  L  M  G  L  Q  R  G  I  L  D  Q  L  V  L  V  P  C  C  V  L  Q  M  E  V  W :   F  S  G  C  V  K  V  W  V  W  Q  L  T  T  L  L  N  I  E  V  *  S  *  G  *  N  M  L  L  R  K  V  S  N  M  *  K  L  R  V  T  Q  N  S  S  A  C  R :   L  K  E  S  G  N  A  R  T  R  T  W  L  S  Y  P  R  L  *  K  S  L  K  I  I  L  Y  H  S  R  S  T  I  F  T  E :   N  S  T  L  K  L  M  P  R  Q  I  *  P  C  I  L  R  :  V  V  N  F  K  W  N  V  T  R  K  Q  L  N  I  V  K  S  P  T  T  P  T  C  L  G  D  F  V  K  D  E  *  H  S  R  P  M  H  N  G  S  S  L  V  L  F  F  F  F  V  D  I  *  S  E  S  S  G  L  E  K  L  L  F  R  G  L  L  E  S  I  I  L  F  S  L  A  M  E  I  N  *  F  S  K  A  N  Y  S  S  T  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5125" stop="5223"/>
                    <exon start="5445" stop="5603"/>
                    <exon start="7418" stop="7477"/>
                    <exon start="8074" stop="8172"/>
                    <exon start="9476" stop="9583"/>
                    <exon start="9663" stop="9806"/>
                    <exon start="10985" stop="11092"/>
                    <exon start="11522" stop="11573"/>
                    <exon start="11641" stop="11681"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>867</number_coding_nucleotides>
                  <number_encoded_amino_acids>289</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGDEKDAFYVVHKGDVIAVYKNLSDLQALLRSSVGEPAISVYKGYHLAKQSEEYLASHGLKNAMYSMDFSDVRDDLFGILVPCPFRQPGSSKDKIMGKNLPEKRMQMEVVASPSFSAAGQQKHATLDNCLEIPPISSYCPPYIQCSCILEFDGASKGNPGPAGAGAVLRAADGSMVFRLREGVGVATNNVAEYRGVILGLKYALEKGFKHVKVKGDSKLVCMQTQGIWKCKNQNMAELSKIVKELKDHFVSFQINHIYREFNTEADAQANLAVYLKSGEFQVECDKKTT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="8183" e_stop="8707"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="8183" e_stop="8707" e_length="525"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8183" stop="8707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U602874" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTTTACCTAACAATTCTTTGTATCAATACGTTTAAATTCTTGTCATTGTCTGCTTTATCTGGATGTTGACATTCTTGGGGTGGGGTGAGGGTGGTGATTTGGTGGGTGGTTAGCCTTGGAAAGGGCTTGCTCCTATGTTTTGACTTTATTCTGCTGCTGGCCGAAACTAGTGAGGATAGTGATGCGTATTGGAGCTGATTTGGAAAATAAAAGGTTGAGAAGTCCTGATTCGGCAACCACTGATCCAAGGGGGACCAAGTGATTCTTAAATCAAACTGTAAGGGCAAAGTGGAACATTGTTGGTTAACGTTGCGCAAAAGTCCAAAGTTGGAAGATGGTGACAAAATTTATATGTAATCTATGTTGCTGGGATTCTCCAAGAAATAGTGCTGCACCCATGCTAGATCCTCCAAAATGCACTACTTTTGAAGGATTCGACATGCTCTCATCAACATTTTAGAGTCCGAGCAACATAACTTGTATTAAGTTTATTTTAGAATGTAAGGGGTCGTTTGGTACAAAA</gDNA_template>
            <first_frame> Y  F  T  *  Q  F  F  V  S  I  R  L  N  S  C  H  C  L  L  Y  L  D  V  D  I  L  G  V  G  *  G  W  *  F  G  G  W  L  A  L  E  R  A  C  S  Y  V  L  T  L  F  C  C  W  P  K  L  V  R  I  V  M  R  I  G  A  D  L  E  N  K  R  L  R  S  P  D  S  A  T  T  D  P  R  G  T  K  *  F  L  N  Q  T  V  R  A  K  W  N  I  V  G  *  R  C  A  K  V  Q  S  W  K  M  V  T  K  F  I  C  N  L  C  C  W  D  S  P  R  N  S  A  A  P  M  L  D  P  P  K  C  T  T  F  E  G  F  D  M  L  S  S  T  F  *  S  P  S  N  I  T  C  I  K  F  I  L  E  C  K  G  S  F  G  T  K </first_frame>
            <second_frame>  I  L  P  N  N  S  L  Y  Q  Y  V  *  I  L  V  I  V  C  F  I  W  M  L  T  F  L  G  W  G  E  G  G  D  L  V  G  G  *  P  W  K  G  L  A  P  M  F  *  L  Y  S  A  A  G  R  N  *  *  G  *  *  C  V  L  E  L  I  W  K  I  K  G  *  E  V  L  I  R  Q  P  L  I  Q  G  G  P  S  D  S  *  I  K  L  *  G  Q  S  G  T  L  L  V  N  V  A  Q  K  S  K  V  G  R  W  *  Q  N  L  Y  V  I  Y  V  A  G  I  L  Q  E  I  V  L  H  P  C  *  I  L  Q  N  A  L  L  L  K  D  S  T  C  S  H  Q  H  F  R  V  R  A  T  *  L  V  L  S  L  F  *  N  V  R  G  R  L  V  Q   </second_frame>
            <third_frame>   F  Y  L  T  I  L  C  I  N  T  F  K  F  L  S  L  S  A  L  S  G  C  *  H  S  W  G  G  V  R  V  V  I  W  W  V  V  S  L  G  K  G  L  L  L  C  F  D  F  I  L  L  L  A  E  T  S  E  D  S  D  A  Y  W  S  *  F  G  K  *  K  V  E  K  S  *  F  G  N  H  *  S  K  G  D  Q  V  I  L  K  S  N  C  K  G  K  V  E  H  C  W  L  T  L  R  K  S  P  K  L  E  D  G  D  K  I  Y  M  *  S  M  L  L  G  F  S  K  K  *  C  C  T  H  A  R  S  S  K  M  H  Y  F  *  R  I  R  H  A  L  I  N  I  L  E  S  E  Q  H  N  L  Y  *  V  Y  F  R  M  *  G  V  V  W  Y  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0189G15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="12350" PGL_stop="15466"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12460" e_stop="12748"/>
            <exon e_start="13447" e_stop="14414"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="0.969"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.969">
            <gDNA_exon_boundary e_start="12460" e_stop="12748" e_length="289"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="12749" i_stop="13446" i_length="698"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="13447" e_stop="14414" e_length="968"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12460" stop="12748"/>
              <exon start="13447" stop="14169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U576182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13861" stop="14414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U587946" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAG : GCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAGGTAAATTGAGTGTGTAAAATTCAAAGCTTCTTCTGGTACATGCTAATTTGTTGACACTTCACAAAACACATTACTTGTCTGCTGCATTTGAGATACAATGTAGTAGCAGTTGCAGGGACTCTGAGTTTTTATTTTTCTGTGTAATATTAATGCTACTTGTGAATCACCAGAAGACTCGCTATTACATTGAAGAGTGAAATAAACAACACAGGTTGTTTACACTTTAAAGGACAAATTAAAGAAAGGAAAACGTTCTGATCTTTCTGAGGGATTTAAACTCTTTTTTTCTTGGAACTAGGCATATCTGAGATCTTATAATCTAGAATCAAAGAATCAGATACAGATATTCATCTGATTCTAGTTTTTCAGAAGCTGCAAGAGAGAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTTACAGGAAATTTCTTTGTAGAAAGTTTACAGCTCAATCAGCATAATGCACCTTAGAGATATATTAAAGTACTAAATTCTGAAGCATGCTTTAGGTTCCTTGTAGTTTCCTACATTCAATATGCAATATAGTGGACAACTTCCAGGTGGACTATCTTGTGCTGCCTTTTTGTGTTTGGAGTTTCTCTATAAATGATAGGAACAGTCTATCTAAATGAACGATATCCTTTAACTTTTCATGGTGAGGG</gDNA_template>
            <first_frame> S  Q  I  S  F  S  N  S  P  F  F  I  *  C  N  S  P  A  F  P  N  A  I  S  S  V  S  K  Q  Q  E  H  W  R  W  L  F  L  L  F  K  F  G  E  S  E  G  T  F  E  N  Y  Q  D  M  F  C  N  *  G  R  W  C  Y  C  C  C  R  R  R  I  C  C  S  H  Y  I  *  S  N  C  F  C  F  R  L  P  F  R  R  S  N  Y  V  L  S   : G  R  R  N  N  E  *  S  C  Y  S  F  R  D  *  L  F  R  G  K  L  S  V  *  N  S  K  L  L  L  V  H  A  N  L  L  T  L  H  K  T  H  Y  L  S  A  A  F  E  I  Q  C  S  S  S  C  R  D  S  E  F  L  F  F  C  V  I  L  M  L  L  V  N  H  Q  K  T  R  Y  Y  I  E  E  *  N  K  Q  H  R  L  F  T  L  *  R  T  N  *  R  K  E  N  V  L  I  F  L  R  D  L  N  S  F  F  L  G  T  R  H  I  *  D  L  I  I  *  N  Q  R  I  R  Y  R  Y  S  S  D  S  S  F  S  E  A  A  R  E  N  Y  *  F  C  E  C  L  M  E  S  Y  I  S  F  S  T  S  I  K  T  S  D  F  S  *  *  L  E  L  K  N  N  C  R  L  P  *  L  K  K  K  T  S  S  C  S  L  T  F  I  V  C  P  Y  V  Y  R  I  L  K  A  L  Q  V  S  K  F  K  L  S  R  A  L  Q  V  S  R  *  F  T  Y  I  M  L  L  L  H  *  L  I  S  L  F  C  Y  R  K  F  L  C  R  K  F  T  A  Q  S  A  *  C  T  L  E  I  Y  *  S  T  K  F  *  S  M  L  *  V  P  C  S  F  L  H  S  I  C  N  I  V  D  N  F  Q  V  D  Y  L  V  L  P  F  C  V  W  S  F  S  I  N  D  R  N  S  L  S  K  *  T  I  S  F  N  F  S  W  *  G </first_frame>
            <second_frame>  A  K  S  H  S  R  I  P  H  S  S  S  N  A  I  P  Q  L  F  P  M  Q  F  L  R  C  Q  S  N  R  S  I  G  G  G  Y  S  C  S  S  S  S  V  K  A  K  V  P  L  R  T  T  R  I  C  S  A  T  E  E  D  G  A  T  A  V  A  E  E  E  S  A  A  P  T  T  S  D  Q  T  V  S  V  S  V  S  P  S  D  V  L  T  M  F  F  Q  :  A  E  G  T  M  N  E  A  A  I  P  S  V  T  N  S  L  E  V  N  *  V  C  K  I  Q  S  F  F  W  Y  M  L  I  C  *  H  F  T  K  H  I  T  C  L  L  H  L  R  Y  N  V  V  A  V  A  G  T  L  S  F  Y  F  S  V  *  Y  *  C  Y  L  *  I  T  R  R  L  A  I  T  L  K  S  E  I  N  N  T  G  C  L  H  F  K  G  Q  I  K  E  R  K  T  F  *  S  F  *  G  I  *  T  L  F  F  L  E  L  G  I  S  E  I  L  *  S  R  I  K  E  S  D  T  D  I  H  L  I  L  V  F  Q  K  L  Q  E  R  T  I  D  F  V  N  V  *  W  R  A  I  S  L  S  P  P  L  S  K  H  Q  I  L  A  N  N  W  N  *  R  I  I  A  G  C  P  N  *  K  R  K  Q  V  V  V  V  *  P  L  S  S  V  H  M  Y  T  G  Y  *  R  H  Y  R  S  Q  N  S  S  C  R  G  H  C  K  C  R  G  D  S  H  I  *  C  F  S  Y  I  D  L  L  A  Y  S  V  T  G  N  F  F  V  E  S  L  Q  L  N  Q  H  N  A  P  *  R  Y  I  K  V  L  N  S  E  A  C  F  R  F  L  V  V  S  Y  I  Q  Y  A  I  *  W  T  T  S  R  W  T  I  L  C  C  L  F  V  F  G  V  S  L  *  M  I  G  T  V  Y  L  N  E  R  Y  P  L  T  F  H  G  E   </second_frame>
            <third_frame>   P  N  L  I  L  E  F  P  I  L  H  L  M  Q  F  P  S  F  S  Q  C  N  F  F  G  V  K  A  T  G  A  L  A  V  V  I  L  A  L  Q  V  R  *  K  R  R  Y  L  *  E  L  P  G  Y  V  L  Q  L  R  K  M  V  L  L  L  L  P  K  K  N  L  L  L  P  L  H  L  I  K  L  F  L  F  P  S  P  L  P  T  F  *  L  C  S  F  R :   Q  K  E  Q  *  M  K  L  L  F  L  P  *  L  T  L  *  R  *  I  E  C  V  K  F  K  A  S  S  G  T  C  *  F  V  D  T  S  Q  N  T  L  L  V  C  C  I  *  D  T  M  *  *  Q  L  Q  G  L  *  V  F  I  F  L  C  N  I  N  A  T  C  E  S  P  E  D  S  L  L  H  *  R  V  K  *  T  T  Q  V  V  Y  T  L  K  D  K  L  K  K  G  K  R  S  D  L  S  E  G  F  K  L  F  F  S  W  N  *  A  Y  L  R  S  Y  N  L  E  S  K  N  Q  I  Q  I  F  I  *  F  *  F  F  R  S  C  K  R  E  L  L  I  L  *  M  F  D  G  E  L  Y  L  F  L  H  L  Y  Q  N  I  R  F  *  L  I  I  G  I  E  E  *  L  Q  V  A  L  I  K  K  E  N  K  *  L  *  F  D  L  Y  R  L  S  I  C  I  Q  D  I  E  G  I  T  G  L  K  I  Q  V  V  E  G  I  A  S  V  E  V  I  H  I  Y  N  A  S  L  T  L  T  Y  *  P  I  L  L  Q  E  I  S  L  *  K  V  Y  S  S  I  S  I  M  H  L  R  D  I  L  K  Y  *  I  L  K  H  A  L  G  S  L  *  F  P  T  F  N  M  Q  Y  S  G  Q  L  P  G  G  L  S  C  A  A  F  L  C  L  E  F  L  Y  K  *  *  E  Q  S  I  *  M  N  D  I  L  *  L  F  M  V  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12461" stop="12748"/>
                    <exon start="13447" stop="13509"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>348</number_coding_nucleotides>
                  <number_encoded_amino_acids>116</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AKSHSRIPHSSSNAIPQLFPMQFLRCQSNRSIGGGYSCSSSSVKAKVPLRTTRICSATEEDGATAVAEEESAAPTTSDQTVSVSVSPSDVLTMFFQAEGTMNEAAIPSVTNSLEVN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="12350" e_stop="12748"/>
            <exon e_start="13447" e_stop="13500"/>
            <exon e_start="14057" e_stop="14116"/>
            <exon e_start="15074" e_stop="15466"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12350" e_stop="12748" e_length="399"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="12749" i_stop="13446" i_length="698"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="13447" e_stop="13500" e_length="54"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="13501" i_stop="14056" i_length="556"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="14057" e_stop="14116" e_length="60"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.985">
            <gDNA_intron_boundary i_start="14117" i_stop="15073" i_length="957"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="15074" e_stop="15466" e_length="393"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12350" stop="12748"/>
              <exon start="13447" stop="13500"/>
              <exon start="14057" stop="14116"/>
              <exon start="15074" stop="15466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U576181" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTTCCTTCCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAG : GCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAG : GATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAG : TTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTTGGTTGAAACAATACAAGGTTCAGGCTTCAAGTTGCAAACATTGAATCTGAGCTTTCAGGATGAAGAAGATATTAGCTAAGTGGTGGCTTGTAGAATTCAGAGACATGATAGGCTGATATCTTTCACGGGCATCCTGAGAGATCTCTGTTTATTTGTATGCCAGTAGTTTCAGTAAGCCTATATCTGTAACATTTTTGTGTTATGCAGTTCTTTGATCTTTTTCTTCCTTAGCATATGTTCCTTTCCGCAACTTATAAAAATACTTGTGAATTACTAATGATCAGCAGAATCATTTTGTTTACTTGTTGAAACAAGTGGTATACGATTGGAAAAGGTACTTCTTATG</gDNA_template>
            <first_frame> G  S  F  H  L  *  S  G  F  W  I  R  V  K  N  H  S  E  E  F  A  S  E  K  K  N  M  A  T  V  S  A  F  S  V  C  R  A  K  S  H  S  R  I  P  H  S  S  S  N  A  I  P  Q  L  F  P  M  Q  F  L  R  C  Q  S  N  R  S  I  G  G  G  Y  S  C  S  S  S  S  V  K  A  K  V  P  L  R  T  T  R  I  C  S  A  T  E  E  D  G  A  T  A  V  A  E  E  E  S  A  A  P  T  T  S  D  Q  T  V  S  V  S  V  S  P  S  D  V  L  T  M  F  F  Q  :  A  E  G  T  M  N  E  A  A  I  P  S  V  T  N  S  L  E  :  D  I  E  G  I  T  G  L  K  I  Q  V  V  E  G  I  A  S  V  E  :  L  T  K  Q  T  T  I  Q  A  T  G  V  A  S  S  L  V  E  T  I  Q  G  S  G  F  K  L  Q  T  L  N  L  S  F  Q  D  E  E  D  I  S  *  V  V  A  C  R  I  Q  R  H  D  R  L  I  S  F  T  G  I  L  R  D  L  C  L  F  V  C  Q  *  F  Q  *  A  Y  I  C  N  I  F  V  L  C  S  S  L  I  F  F  F  L  S  I  C  S  F  P  Q  L  I  K  I  L  V  N  Y  *  *  S  A  E  S  F  C  L  L  V  E  T  S  G  I  R  L  E  K  V  L  L  M </first_frame>
            <second_frame>  V  P  S  I  C  N  L  A  S  G  *  E  *  K  I  T  L  R  N  L  R  R  K  K  K  I  W  R  P  S  Q  H  F  P  F  V  E  P  N  L  I  L  E  F  P  I  L  H  L  M  Q  F  P  S  F  S  Q  C  N  F  F  G  V  K  A  T  G  A  L  A  V  V  I  L  A  L  Q  V  R  *  K  R  R  Y  L  *  E  L  P  G  Y  V  L  Q  L  R  K  M  V  L  L  L  L  P  K  K  N  L  L  L  P  L  H  L  I  K  L  F  L  F  P  S  P  L  P  T  F  *  L  C  S  F  R :   Q  K  E  Q  *  M  K  L  L  F  L  P  *  L  T  L  *  R :   I  L  K  A  L  Q  V  S  K  F  K  L  S  R  A  L  Q  V  S  S :   *  Q  S  K  R  Q  Y  K  L  Q  G  W  L  Q  V  W  L  K  Q  Y  K  V  Q  A  S  S  C  K  H  *  I  *  A  F  R  M  K  K  I  L  A  K  W  W  L  V  E  F  R  D  M  I  G  *  Y  L  S  R  A  S  *  E  I  S  V  Y  L  Y  A  S  S  F  S  K  P  I  S  V  T  F  L  C  Y  A  V  L  *  S  F  S  S  L  A  Y  V  P  F  R  N  L  *  K  Y  L  *  I  T  N  D  Q  Q  N  H  F  V  Y  L  L  K  Q  V  V  Y  D  W  K  R  Y  F  L   </second_frame>
            <third_frame>   F  L  P  F  V  I  W  L  L  D  K  S  E  K  S  L  *  G  I  C  V  G  K  K  K  Y  G  D  R  L  S  I  F  R  L  *  S  Q  I  S  F  S  N  S  P  F  F  I  *  C  N  S  P  A  F  P  N  A  I  S  S  V  S  K  Q  Q  E  H  W  R  W  L  F  L  L  F  K  F  G  E  S  E  G  T  F  E  N  Y  Q  D  M  F  C  N  *  G  R  W  C  Y  C  C  C  R  R  R  I  C  C  S  H  Y  I  *  S  N  C  F  C  F  R  L  P  F  R  R  S  N  Y  V  L  S   : G  R  R  N  N  E  *  S  C  Y  S  F  R  D  *  L  F  R   : G  Y  *  R  H  Y  R  S  Q  N  S  S  C  R  G  H  C  K  C  R   : V  N  K  A  N  D  N  T  S  Y  R  G  G  F  K  F  G  *  N  N  T  R  F  R  L  Q  V  A  N  I  E  S  E  L  S  G  *  R  R  Y  *  L  S  G  G  L  *  N  S  E  T  *  *  A  D  I  F  H  G  H  P  E  R  S  L  F  I  C  M  P  V  V  S  V  S  L  Y  L  *  H  F  C  V  M  Q  F  F  D  L  F  L  P  *  H  M  F  L  S  A  T  Y  K  N  T  C  E  L  L  M  I  S  R  I  I  L  F  T  C  *  N  K  W  Y  T  I  G  K  G  T  S  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12368" stop="12748"/>
                    <exon start="13447" stop="13500"/>
                    <exon start="14057" stop="14116"/>
                    <exon start="15074" stop="15199"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>618</number_coding_nucleotides>
                  <number_encoded_amino_acids>206</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGFWIRVKNHSEEFASEKKNMATVSAFSVCRAKSHSRIPHSSSNAIPQLFPMQFLRCQSNRSIGGGYSCSSSSVKAKVPLRTTRICSATEEDGATAVAEEESAAPTTSDQTVSVSVSPSDVLTMFFQAEGTMNEAAIPSVTNSLEDIEGITGLKIQVVEGIASVELTKQTTIQATGVASSLVETIQGSGFKLQTLNLSFQDEEDIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="18805" PGL_stop="21274"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18805" e_stop="18829"/>
            <exon e_start="18934" e_stop="19008"/>
            <exon e_start="19160" e_stop="19226"/>
            <exon e_start="19608" e_stop="19930"/>
            <exon e_start="21239" e_stop="21274"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.881" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.983" e_score="0.973"/>
          <exon-intron don_prob="0.990" acc_prob="0.854" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.995" e_score="0.972"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="18805" e_stop="18829" e_length="25"/>
          </exon>
          <intron i_serial="1" don_prob="0.881" acc_prob="0.966">
            <gDNA_intron_boundary i_start="18830" i_stop="18933" i_length="104"/>
          </intron>
          <exon e_serial="2" e_score="0.973">
            <gDNA_exon_boundary e_start="18934" e_stop="19008" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.983">
            <gDNA_intron_boundary i_start="19009" i_stop="19159" i_length="151"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="19160" e_stop="19226" e_length="67"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.854">
            <gDNA_intron_boundary i_start="19227" i_stop="19607" i_length="381"/>
          </intron>
          <exon e_serial="4" e_score="0.972">
            <gDNA_exon_boundary e_start="19608" e_stop="19930" e_length="323"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.995">
            <gDNA_intron_boundary i_start="19931" i_stop="21238" i_length="1308"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="21239" e_stop="21274" e_length="36"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18805" stop="18829"/>
              <exon start="18934" stop="19008"/>
              <exon start="19160" stop="19226"/>
              <exon start="19608" stop="19930"/>
              <exon start="21239" stop="21274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U597128" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAAGCTGACATAGCACCACTGATG : TCCACTCTTCTTGGTCTGCCATGTCCTATCAACTCAGTTGGCAATCTGCCTCTTCAGTACATGAATCTGAACAAG : GCAGAAGAAGTTGAAGCTGTGCTGGCCAATACGAAGCAAATCCTCAATCAGTTCCTTCGAAAGTCAC : AGTTAAAGCAGTCGACCTCATTATACATCAAGCCTTTCAAGCCCTTGGCTAGTTATTCATCACTATTGCGTGAAATTGAGCAACTGATTTCTCTCAAAGAGTATGAAACTGCAGTGAAATTATCTGAACATCTTAGGAGCTTGGCACTTCAAGGACTTCACTATTTTCAGACATATGATTGGCTGATGCTGATGACTGTAATCACTCTTGGCTATGTTGGTTGGATGATCTATGTCATACTCCATATCTTGCAATCTTATACATCCCTACCTGCAAATATTTTTAGCAAGGACCAAGTGCCTAATCCAAGAAGTACAGTTAAG : ATACATCTTTTAGGAGGGTTGTTGATGGGAGTAGCG</gDNA_template>
            <first_frame> S  S  *  H  S  T  T  D   : V  H  S  S  W  S  A  M  S  Y  Q  L  S  W  Q  S  A  S  S  V  H  E  S  E  Q   : G  R  R  S  *  S  C  A  G  Q  Y  E  A  N  P  Q  S  V  P  S  K  V  T :   V  K  A  V  D  L  I  I  H  Q  A  F  Q  A  L  G  *  L  F  I  T  I  A  *  N  *  A  T  D  F  S  Q  R  V  *  N  C  S  E  I  I  *  T  S  *  E  L  G  T  S  R  T  S  L  F  S  D  I  *  L  A  D  A  D  D  C  N  H  S  W  L  C  W  L  D  D  L  C  H  T  P  Y  L  A  I  L  Y  I  P  T  C  K  Y  F  *  Q  G  P  S  A  *  S  K  K  Y  S  *   : D  T  S  F  R  R  V  V  D  G  S  S  </first_frame>
            <second_frame>  Q  A  D  I  A  P  L  M  :  S  T  L  L  G  L  P  C  P  I  N  S  V  G  N  L  P  L  Q  Y  M  N  L  N  K  :  A  E  E  V  E  A  V  L  A  N  T  K  Q  I  L  N  Q  F  L  R  K  S   : Q  L  K  Q  S  T  S  L  Y  I  K  P  F  K  P  L  A  S  Y  S  S  L  L  R  E  I  E  Q  L  I  S  L  K  E  Y  E  T  A  V  K  L  S  E  H  L  R  S  L  A  L  Q  G  L  H  Y  F  Q  T  Y  D  W  L  M  L  M  T  V  I  T  L  G  Y  V  G  W  M  I  Y  V  I  L  H  I  L  Q  S  Y  T  S  L  P  A  N  I  F  S  K  D  Q  V  P  N  P  R  S  T  V  K  :  I  H  L  L  G  G  L  L  M  G  V  A </second_frame>
            <third_frame>   K  L  T  *  H  H  *  C :   P  L  F  L  V  C  H  V  L  S  T  Q  L  A  I  C  L  F  S  T  *  I  *  T  R :   Q  K  K  L  K  L  C  W  P  I  R  S  K  S  S  I  S  S  F  E  S  H  :  S  *  S  S  R  P  H  Y  T  S  S  L  S  S  P  W  L  V  I  H  H  Y  C  V  K  L  S  N  *  F  L  S  K  S  M  K  L  Q  *  N  Y  L  N  I  L  G  A  W  H  F  K  D  F  T  I  F  R  H  M  I  G  *  C  *  *  L  *  S  L  L  A  M  L  V  G  *  S  M  S  Y  S  I  S  C  N  L  I  H  P  Y  L  Q  I  F  L  A  R  T  K  C  L  I  Q  E  V  Q  L  R :   Y  I  F  *  E  G  C  *  W  E  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18806" stop="18829"/>
                    <exon start="18934" stop="19008"/>
                    <exon start="19160" stop="19226"/>
                    <exon start="19608" stop="19930"/>
                    <exon start="21239" stop="21274"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>525</number_coding_nucleotides>
                  <number_encoded_amino_acids>175</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QADIAPLMSTLLGLPCPINSVGNLPLQYMNLNKAEEVEAVLANTKQILNQFLRKSQLKQSTSLYIKPFKPLASYSSLLREIEQLISLKEYETAVKLSEHLRSLALQGLHYFQTYDWLMLMTVITLGYVGWMIYVILHILQSYTSLPANIFSKDQVPNPRSTVKIHLLGGLLMGVA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="22110" PGL_stop="25321"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22110" e_stop="22189"/>
            <exon e_start="23200" e_stop="23302"/>
            <exon e_start="23394" e_stop="23562"/>
            <exon e_start="23744" e_stop="23842"/>
            <exon e_start="23941" e_stop="23999"/>
            <exon e_start="24909" e_stop="25014"/>
            <exon e_start="25255" e_stop="25321"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.969" e_score="0.942"/>
          <exon-intron don_prob="0.465" acc_prob="0.419" e_score="1.000"/>
          <exon-intron don_prob="0.894" acc_prob="0.913" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.920" e_score="0.981"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22110" e_stop="22189" e_length="80"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.963">
            <gDNA_intron_boundary i_start="22190" i_stop="23199" i_length="1010"/>
          </intron>
          <exon e_serial="2" e_score="0.942">
            <gDNA_exon_boundary e_start="23200" e_stop="23302" e_length="103"/>
          </exon>
          <intron i_serial="2" don_prob="0.963" acc_prob="0.969">
            <gDNA_intron_boundary i_start="23303" i_stop="23393" i_length="91"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="23394" e_stop="23562" e_length="169"/>
          </exon>
          <intron i_serial="3" don_prob="0.465" acc_prob="0.419">
            <gDNA_intron_boundary i_start="23563" i_stop="23743" i_length="181"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="23744" e_stop="23842" e_length="99"/>
          </exon>
          <intron i_serial="4" don_prob="0.894" acc_prob="0.913">
            <gDNA_intron_boundary i_start="23843" i_stop="23940" i_length="98"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="23941" e_stop="23999" e_length="59"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.997">
            <gDNA_intron_boundary i_start="24000" i_stop="24908" i_length="909"/>
          </intron>
          <exon e_serial="6" e_score="0.981">
            <gDNA_exon_boundary e_start="24909" e_stop="25014" e_length="106"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.920">
            <gDNA_intron_boundary i_start="25015" i_stop="25254" i_length="240"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="25255" e_stop="25321" e_length="67"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22110" stop="22189"/>
              <exon start="23200" stop="23302"/>
              <exon start="23394" stop="23562"/>
              <exon start="23744" stop="23842"/>
              <exon start="23941" stop="23999"/>
              <exon start="24909" stop="25014"/>
              <exon start="25255" stop="25321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U604579" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTTTGGCTTTCAACTATTCATAGAACAGAGAAGCAGGAATTATTAGTCCTCCACCAACTGTTGAATTGGTCCATAGCTG : GCTTCTCGATGATACTCCCACTCTTTTCAGCTACTGGTCTCTTATCCAGGCTGACTTCCATTTTCCTTGGCGTTGCACCTCCCTTCCTGCTTCTATCAATCGG : TTATGAAGCAGTCTTCTATGGTGCTCTCAGTCTTGCACTTATAGCATGGATACTGGCGGAAAATGCTTATCTCCATATAAGCAAGTTCAGATCATCAGCTCCAGTCAAATCCATGGAGGATGATAATAGGTGTCTGGAGTTATCCGATATGAGGATCCCATTAACTTTT : ATGGTCTTTTTCAATATTGCATTCTTTGGAACTGGTAATTTTGCAAGTATTGCAAGTTTTGAGATCTCCTCCGTGTATCGATTCATTACAATTTTCAGT : CCTTTTCTGATGGCGGCATTACTTATTTTCAAGCTGTTGATACCATTCATACTTGTCAT : ATGTGCGTTCAGTGCAATCACAAAATTGGTGCAAGTTCCATTGTTGGGATGCTATTTTCTGGTGATCTTGTGCTCTGATGTAATGACAATCCATTTCTTCTTCCTG : GTCCGAAATAAAGGAAGCTGGATGGAAATTGGCAACAGCATTAGCCATTTCGGAATTATGAGTGCTC</gDNA_template>
            <first_frame> G  L  A  F  N  Y  S  *  N  R  E  A  G  I  I  S  P  P  P  T  V  E  L  V  H  S  W :   L  L  D  D  T  P  T  L  F  S  Y  W  S  L  I  Q  A  D  F  H  F  P  W  R  C  T  S  L  P  A  S  I  N  R  :  L  *  S  S  L  L  W  C  S  Q  S  C  T  Y  S  M  D  T  G  G  K  C  L  S  P  Y  K  Q  V  Q  I  I  S  S  S  Q  I  H  G  G  *  *  *  V  S  G  V  I  R  Y  E  D  P  I  N  F   : Y  G  L  F  Q  Y  C  I  L  W  N  W  *  F  C  K  Y  C  K  F  *  D  L  L  R  V  S  I  H  Y  N  F  Q   : S  F  S  D  G  G  I  T  Y  F  Q  A  V  D  T  I  H  T  C  H  :  M  C  V  Q  C  N  H  K  I  G  A  S  S  I  V  G  M  L  F  S  G  D  L  V  L  *  C  N  D  N  P  F  L  L  P   : G  P  K  *  R  K  L  D  G  N  W  Q  Q  H  *  P  F  R  N  Y  E  C   </first_frame>
            <second_frame>  V  W  L  S  T  I  H  R  T  E  K  Q  E  L  L  V  L  H  Q  L  L  N  W  S  I  A   : G  F  S  M  I  L  P  L  F  S  A  T  G  L  L  S  R  L  T  S  I  F  L  G  V  A  P  P  F  L  L  L  S  I  G :   Y  E  A  V  F  Y  G  A  L  S  L  A  L  I  A  W  I  L  A  E  N  A  Y  L  H  I  S  K  F  R  S  S  A  P  V  K  S  M  E  D  D  N  R  C  L  E  L  S  D  M  R  I  P  L  T  F  :  M  V  F  F  N  I  A  F  F  G  T  G  N  F  A  S  I  A  S  F  E  I  S  S  V  Y  R  F  I  T  I  F  S  :  P  F  L  M  A  A  L  L  I  F  K  L  L  I  P  F  I  L  V  I :   C  A  F  S  A  I  T  K  L  V  Q  V  P  L  L  G  C  Y  F  L  V  I  L  C  S  D  V  M  T  I  H  F  F  F  L  :  V  R  N  K  G  S  W  M  E  I  G  N  S  I  S  H  F  G  I  M  S  A  </second_frame>
            <third_frame>   F  G  F  Q  L  F  I  E  Q  R  S  R  N  Y  *  S  S  T  N  C  *  I  G  P  *  L  :  A  S  R  *  Y  S  H  S  F  Q  L  L  V  S  Y  P  G  *  L  P  F  S  L  A  L  H  L  P  S  C  F  Y  Q  S   : V  M  K  Q  S  S  M  V  L  S  V  L  H  L  *  H  G  Y  W  R  K  M  L  I  S  I  *  A  S  S  D  H  Q  L  Q  S  N  P  W  R  M  I  I  G  V  W  S  Y  P  I  *  G  S  H  *  L  L :   W  S  F  S  I  L  H  S  L  E  L  V  I  L  Q  V  L  Q  V  L  R  S  P  P  C  I  D  S  L  Q  F  S  V :   L  F  *  W  R  H  Y  L  F  S  S  C  *  Y  H  S  Y  L  S   : Y  V  R  S  V  Q  S  Q  N  W  C  K  F  H  C  W  D  A  I  F  W  *  S  C  A  L  M  *  *  Q  S  I  S  S  S  W :   S  E  I  K  E  A  G  W  K  L  A  T  A  L  A  I  S  E  L  *  V  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22111" stop="22189"/>
                    <exon start="23200" stop="23302"/>
                    <exon start="23394" stop="23562"/>
                    <exon start="23744" stop="23842"/>
                    <exon start="23941" stop="23999"/>
                    <exon start="24909" stop="25014"/>
                    <exon start="25255" stop="25320"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>681</number_coding_nucleotides>
                  <number_encoded_amino_acids>227</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VWLSTIHRTEKQELLVLHQLLNWSIAGFSMILPLFSATGLLSRLTSIFLGVAPPFLLLSIGYEAVFYGALSLALIAWILAENAYLHISKFRSSAPVKSMEDDNRCLELSDMRIPLTFMVFFNIAFFGTGNFASIASFEISSVYRFITIFSPFLMAALLIFKLLIPFILVICAFSAITKLVQVPLLGCYFLVILCSDVMTIHFFFLVRNKGSWMEIGNSISHFGIMSA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="26439" PGL_stop="27652"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26439" e_stop="26501"/>
            <exon e_start="27035" e_stop="27652"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.841" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26439" e_stop="26501" e_length="63"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.841">
            <gDNA_intron_boundary i_start="26502" i_stop="27034" i_length="533"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27035" e_stop="27652" e_length="618"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26439" stop="26501"/>
              <exon start="27035" stop="27652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U597345" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCCTCTGTGTTAGGGCAGAAAAATCTGAAGCTGATTCCTCCATTTTCTTCCACAAACGAAAG : AATGTTCAACACCAACTTCTGCAATCGCCGGCACGGCTAGGCCTGCCAACTCCCAGTTCACCTTCTCTACAAAACACAACTCCTCCTACTAAGTTCTCCTCGCAAGCGTCGCAACCCAATCAACAGGCAAATATATTAACTACCACTACCACCTCATCAACGCTCCTTCCTCTTCTCCCACCTCTCTCTAGAGCTCAGTCTCTTCTCATTCAAATGGCGTCTCTTGCGTCAAGGCTCTTTGAAGTCTCACCTAACCGGTCCCATTGGCTTAGTGCTTTTCGTGGCTCTTTCCCTTCATTTCTGCCTTCTACAGCACCAGTTCCACAAGATTCCAGCCCATCGTCCTCAAAAGAAATCCTCTCAGCGTTTACTTCTCTTCAGACACAGCTGTTTGAAGCAGTTGCTGAACTACAAGAAATACTTGATCTTCAAGATGAGAAGCAAAAAGTCACCCGTGAAATTAGGTTAAATGATTCTGCAATTCTTGCCTTCGCCAACAAACTCAAAGGAGCTGAGCATGTTCTTGACAATCTTGTTGATGACTATGCTGACTATCGTCGCCCCAAACGGGCCAAGTTGGAAAACGATACTGAAGAATCTTCATTAACATCTGTGGCG</gDNA_template>
            <first_frame> L  L  C  V  R  A  E  K  S  E  A  D  S  S  I  F  F  H  K  R  K  :  N  V  Q  H  Q  L  L  Q  S  P  A  R  L  G  L  P  T  P  S  S  P  S  L  Q  N  T  T  P  P  T  K  F  S  S  Q  A  S  Q  P  N  Q  Q  A  N  I  L  T  T  T  T  T  S  S  T  L  L  P  L  L  P  P  L  S  R  A  Q  S  L  L  I  Q  M  A  S  L  A  S  R  L  F  E  V  S  P  N  R  S  H  W  L  S  A  F  R  G  S  F  P  S  F  L  P  S  T  A  P  V  P  Q  D  S  S  P  S  S  S  K  E  I  L  S  A  F  T  S  L  Q  T  Q  L  F  E  A  V  A  E  L  Q  E  I  L  D  L  Q  D  E  K  Q  K  V  T  R  E  I  R  L  N  D  S  A  I  L  A  F  A  N  K  L  K  G  A  E  H  V  L  D  N  L  V  D  D  Y  A  D  Y  R  R  P  K  R  A  K  L  E  N  D  T  E  E  S  S  L  T  S  V  A </first_frame>
            <second_frame>  S  S  V  L  G  Q  K  N  L  K  L  I  P  P  F  S  S  T  N  E  R :   M  F  N  T  N  F  C  N  R  R  H  G  *  A  C  Q  L  P  V  H  L  L  Y  K  T  Q  L  L  L  L  S  S  P  R  K  R  R  N  P  I  N  R  Q  I  Y  *  L  P  L  P  P  H  Q  R  S  F  L  F  S  H  L  S  L  E  L  S  L  F  S  F  K  W  R  L  L  R  Q  G  S  L  K  S  H  L  T  G  P  I  G  L  V  L  F  V  A  L  S  L  H  F  C  L  L  Q  H  Q  F  H  K  I  P  A  H  R  P  Q  K  K  S  S  Q  R  L  L  L  F  R  H  S  C  L  K  Q  L  L  N  Y  K  K  Y  L  I  F  K  M  R  S  K  K  S  P  V  K  L  G  *  M  I  L  Q  F  L  P  S  P  T  N  S  K  E  L  S  M  F  L  T  I  L  L  M  T  M  L  T  I  V  A  P  N  G  P  S  W  K  T  I  L  K  N  L  H  *  H  L  W   </second_frame>
            <third_frame>   P  L  C  *  G  R  K  I  *  S  *  F  L  H  F  L  P  Q  T  K   : E  C  S  T  P  T  S  A  I  A  G  T  A  R  P  A  N  S  Q  F  T  F  S  T  K  H  N  S  S  Y  *  V  L  L  A  S  V  A  T  Q  S  T  G  K  Y  I  N  Y  H  Y  H  L  I  N  A  P  S  S  S  P  T  S  L  *  S  S  V  S  S  H  S  N  G  V  S  C  V  K  A  L  *  S  L  T  *  P  V  P  L  A  *  C  F  S  W  L  F  P  F  I  S  A  F  Y  S  T  S  S  T  R  F  Q  P  I  V  L  K  R  N  P  L  S  V  Y  F  S  S  D  T  A  V  *  S  S  C  *  T  T  R  N  T  *  S  S  R  *  E  A  K  S  H  P  *  N  *  V  K  *  F  C  N  S  C  L  R  Q  Q  T  Q  R  S  *  A  C  S  *  Q  S  C  *  *  L  C  *  L  S  S  P  Q  T  G  Q  V  G  K  R  Y  *  R  I  F  I  N  I  C  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26439" stop="26501"/>
                    <exon start="27035" stop="27652"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>681</number_coding_nucleotides>
                  <number_encoded_amino_acids>227</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLCVRAEKSEADSSIFFHKRKNVQHQLLQSPARLGLPTPSSPSLQNTTPPTKFSSQASQPNQQANILTTTTTSSTLLPLLPPLSRAQSLLIQMASLASRLFEVSPNRSHWLSAFRGSFPSFLPSTAPVPQDSSPSSSKEILSAFTSLQTQLFEAVAELQEILDLQDEKQKVTREIRLNDSAILAFANKLKGAEHVLDNLVDDYADYRRPKRAKLENDTEESSLTSVA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="33490" PGL_stop="34969"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33490" e_stop="34969"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="33490" e_stop="34969" e_length="1480"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33490" stop="34520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U573799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33989" stop="34969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U573800" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAAAGCACTTGGACTTATGGAAGAAAATGAGAGAGGAACATGTTTCATTAAATAAAAAATAAAAACATATATCATTGAATGAAGAGAAGTGAGAAATATGAAGACCCCATTGAAGCCCTCCAGCTATTTCCCATCCCCCATTTACCTATTTCCCTCTCCTTTTTTTAGCCATTTTTTTCTATTAACTTTCCCTTCTCAAACACTGAGCTGAAAAACAGAGCAAATGGGTTTAACTCTTCTGCTTTTTCTTTGCTTCTCTGTTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCTTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCTACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATCCTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTACTTCTAAAGCTTCGTTGGTTGAAGGAAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATACAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCGTTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCTTCTTACAATCCCAGATTTGCTCAAGCTTTGAGAAATGCTTGTAATAATTTCCAGAAAGATCCAACATTGTCCGTTTTCAACGACATCATGACTCCGAATAAGTTTGACAACATGTATTACCAGAACTTACCCAAGGGTTTGGGTCTGTTGTCTTCGGACCGGGGTCTGTTTTCAGATCCGAGGACAAGAGTTCATGTTGAAGAGTATATTAGAGATCAAAATGCATTCTTTAAGGCGTTTGCTTCAGCAATGCAGAAGCTAAGTGATCATGGTGTTAAAATTGGGAGAAGTGGTGAGATCAGACACAGATGTGATGCTTTCAACAATTAAACTATTTGAGGGGTATTGATTATGTTACTGTACGTTCGAATTTTTTGTTGAATTTAATCACTCACAAGACGAAAGTAAAACTTATAATATGTATACAATGTTTTTTACTATCATTTTTATTAAGATTACAAGGCTCTGCTTCAGTTCTGCTTTTAGAACAACTACTACTACTACTACTTGTGATTAGTGTGTGTTGAGATGCAGGTAAGAGGCTGTTTGTTCGTCGAATTTGATTCAATAAGAAATGAAACCGTAAATAAAGTTTGCT</gDNA_template>
            <first_frame> R  K  A  L  G  L  M  E  E  N  E  R  G  T  C  F  I  K  *  K  I  K  T  Y  I  I  E  *  R  E  V  R  N  M  K  T  P  L  K  P  S  S  Y  F  P  S  P  I  Y  L  F  P  S  P  F  F  S  H  F  F  L  L  T  F  P  S  Q  T  L  S  *  K  T  E  Q  M  G  L  T  L  L  L  F  L  C  F  S  V  I  L  T  P  S  L  S  Q  H  H  S  P  L  N  T  A  Y  Y  R  R  S  C  P  R  F  E  Q  I  M  Q  E  T  T  T  N  K  Q  I  T  S  P  T  T  A  A  A  T  L  R  L  F  F  H  D  C  F  V  G  G  C  D  A  S  I  L  V  S  S  T  P  F  N  K  A  E  R  D  A  E  I  N  L  S  L  P  G  D  G  F  D  V  V  V  R  A  K  T  A  L  E  L  A  C  P  G  V  V  S  C  S  D  I  L  A  V  A  A  R  N  L  V  V  Q  T  G  G  P  F  Y  P  V  N  L  G  R  K  D  S  F  T  S  K  A  S  L  V  E  G  N  L  P  R  P  T  M  S  M  D  Q  I  I  Q  I  F  G  S  R  G  F  S  V  P  E  M  V  A  L  S  G  A  H  T  I  G  F  S  H  C  K  E  F  S  S  N  L  Y  N  Y  N  K  T  S  Q  Y  D  P  S  Y  N  P  R  F  A  Q  A  L  R  N  A  C  N  N  F  Q  K  D  P  T  L  S  V  F  N  D  I  M  T  P  N  K  F  D  N  M  Y  Y  Q  N  L  P  K  G  L  G  L  L  S  S  D  R  G  L  F  S  D  P  R  T  R  V  H  V  E  E  Y  I  R  D  Q  N  A  F  F  K  A  F  A  S  A  M  Q  K  L  S  D  H  G  V  K  I  G  R  S  G  E  I  R  H  R  C  D  A  F  N  N  *  T  I  *  G  V  L  I  M  L  L  Y  V  R  I  F  C  *  I  *  S  L  T  R  R  K  *  N  L  *  Y  V  Y  N  V  F  Y  Y  H  F  Y  *  D  Y  K  A  L  L  Q  F  C  F  *  N  N  Y  Y  Y  Y  Y  L  *  L  V  C  V  E  M  Q  V  R  G  C  L  F  V  E  F  D  S  I  R  N  E  T  V  N  K  V  C  </first_frame>
            <second_frame>  E  K  H  L  D  L  W  K  K  M  R  E  E  H  V  S  L  N  K  K  *  K  H  I  S  L  N  E  E  K  *  E  I  *  R  P  H  *  S  P  P  A  I  S  H  P  P  F  T  Y  F  P  L  L  F  L  A  I  F  F  Y  *  L  S  L  L  K  H  *  A  E  K  Q  S  K  W  V  *  L  F  C  F  F  F  A  S  L  L  S  *  L  L  L  Y  H  S  T  I  R  R  *  I  L  L  I  T  G  D  H  V  Q  D  L  N  K  L  C  K  K  P  L  Q  T  N  R  S  L  H  L  L  P  P  P  L  P  S  V  S  S  S  T  T  A  S  S  A  A  A  T  R  P  S  S  S  P  P  L  L  S  T  K  L  N  V  T  Q  K  S  T  Y  H  S  P  A  M  G  S  M  *  S  Y  A  P  K  R  R  L  N  L  L  A  P  A  L  S  L  A  P  T  F  S  P  S  L  P  G  I  S  L  F  K  P  E  A  R  F  I  Q  L  I  W  A  V  K  I  L  L  L  L  K  L  R  W  L  K  E  I  C  P  D  P  Q  C  R  W  I  K  S  Y  K  F  S  G  Q  E  G  F  R  Y  R  K  W  *  R  Y  P  V  L  T  Q  L  G  F  P  I  V  K  S  S  A  Q  I  F  T  I  T  T  K  L  P  N  M  I  L  L  T  I  P  D  L  L  K  L  *  E  M  L  V  I  I  S  R  K  I  Q  H  C  P  F  S  T  T  S  *  L  R  I  S  L  T  T  C  I  T  R  T  Y  P  R  V  W  V  C  C  L  R  T  G  V  C  F  Q  I  R  G  Q  E  F  M  L  K  S  I  L  E  I  K  M  H  S  L  R  R  L  L  Q  Q  C  R  S  *  V  I  M  V  L  K  L  G  E  V  V  R  S  D  T  D  V  M  L  S  T  I  K  L  F  E  G  Y  *  L  C  Y  C  T  F  E  F  F  V  E  F  N  H  S  Q  D  E  S  K  T  Y  N  M  Y  T  M  F  F  T  I  I  F  I  K  I  T  R  L  C  F  S  S  A  F  R  T  T  T  T  T  T  T  C  D  *  C  V  L  R  C  R  *  E  A  V  C  S  S  N  L  I  Q  *  E  M  K  P  *  I  K  F  A </second_frame>
            <third_frame>   K  S  T  W  T  Y  G  R  K  *  E  R  N  M  F  H  *  I  K  N  K  N  I  Y  H  *  M  K  R  S  E  K  Y  E  D  P  I  E  A  L  Q  L  F  P  I  P  H  L  P  I  S  L  S  F  F  *  P  F  F  S  I  N  F  P  F  S  N  T  E  L  K  N  R  A  N  G  F  N  S  S  A  F  S  L  L  L  C  Y  L  N  S  F  F  I  T  A  P  F  A  A  K  Y  C  L  L  P  E  I  M  S  K  I  *  T  N  Y  A  R  N  H  Y  K  Q  T  D  H  F  T  Y  Y  R  R  R  Y  P  P  S  L  L  P  R  L  L  R  R  R  L  R  R  V  H  P  R  L  L  H  S  F  Q  Q  S  *  T  *  R  R  N  Q  P  I  T  P  R  R  W  V  R  C  S  R  T  R  Q  N  G  A  *  T  C  L  P  R  R  C  L  L  L  R  H  S  R  R  R  C  P  E  S  R  C  S  N  R  R  P  V  L  S  S  *  F  G  P  *  R  F  F  Y  F  *  S  F  V  G  *  R  K  S  A  P  T  H  N  V  D  G  S  N  H  T  N  F  R  V  K  R  V  F  G  T  G  N  G  S  V  I  R  C  S  H  N  W  V  F  P  L  *  R  V  Q  L  K  S  L  Q  L  Q  Q  N  F  P  I  *  S  F  L  Q  S  Q  I  C  S  S  F  E  K  C  L  *  *  F  P  E  R  S  N  I  V  R  F  Q  R  H  H  D  S  E  *  V  *  Q  H  V  L  P  E  L  T  Q  G  F  G  S  V  V  F  G  P  G  S  V  F  R  S  E  D  K  S  S  C  *  R  V  Y  *  R  S  K  C  I  L  *  G  V  C  F  S  N  A  E  A  K  *  S  W  C  *  N  W  E  K  W  *  D  Q  T  Q  M  *  C  F  Q  Q  L  N  Y  L  R  G  I  D  Y  V  T  V  R  S  N  F  L  L  N  L  I  T  H  K  T  K  V  K  L  I  I  C  I  Q  C  F  L  L  S  F  L  L  R  L  Q  G  S  A  S  V  L  L  L  E  Q  L  L  L  L  L  L  V  I  S  V  C  *  D  A  G  K  R  L  F  V  R  R  I  *  F  N  K  K  *  N  R  K  *  S  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33703" stop="34701"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>996</number_coding_nucleotides>
                  <number_encoded_amino_acids>332</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTEQMGLTLLLFLCFSVILTPSLSQHHSPLNTAYYRRSCPRFEQIMQETTTNKQITSPTTAAATLRLFFHDCFVGGCDASILVSSTPFNKAERDAEINLSLPGDGFDVVVRAKTALELACPGVVSCSDILAVAARNLVVQTGGPFYPVNLGRKDSFTSKASLVEGNLPRPTMSMDQIIQIFGSRGFSVPEMVALSGAHTIGFSHCKEFSSNLYNYNKTSQYDPSYNPRFAQALRNACNNFQKDPTLSVFNDIMTPNKFDNMYYQNLPKGLGLLSSDRGLFSDPRTRVHVEEYIRDQNAFFKAFASAMQKLSDHGVKIGRSGEIRHRCDAFNN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34686" stop="34898"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CFQQLNYLRGIDYVTVRSNFLLNLITHKTKVKLIICIQCFLLSFLLRLQGSASVLLLEQLLLLLLVISVC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="35646" PGL_stop="37114"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35646" e_stop="37114"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="35646" e_stop="37114" e_length="1469"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35646" stop="35930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U577105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35912" stop="37114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U568033" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAATCGAACCAAGTAATTGAAACGAAAAAAATGACAATACAATCTGTAATGAAAAATCTTTCAAAATTGTTGGCATGTAAAAGTCAGCATTAAGGAAATAAAAGAGAATGGAAGGGCTAAGCAGGGTTCAGAAGTTATACATTAACTTATCCCAGTGTAAAAATACTTGAGCAATTGTAGCTATTGCTCATGCACTAAAAGTCCAGTGTAAAAATTTTAGTGCAGAAATTGTAACCTTCCCAGTAGCACCACACATCACATCAGAGTAAAGATTGTGTCAATGGTACACTCTCTTCATTCTTGCTTTCACTGTTTGAGCATCAAGATGCTCAAAAATGAAAAACAACTCTGGAGTTCATTGCATTTGCTCTGCAGCAATGTTTATTGCAATGCAGACCTTAAAGAAACATGAGAATAACAATTCTCTAACAACTTCCGCAGTTGCAGCAATCAATCAACTCCAGCATAAATACCAAATTACTAGACAGCGGCTTGTGGAAGCCACGAACAGTGCATAGAATAAGCCTCAGGCACACAAGAAAGTGAAAATAGCATTGCTTGAAGAGTATTAGGAGACAATGAGTTCATGTTAAAGACAGCCTCTTTTCTCCAAAAACTAAAACACACTGTTCAGAATCTTTCTTTACACCTCCAACATTATTTACCATGTCAACTGTCACATGACCTCAGAAGACACGACGAGCAAAACCAAAACCAAAATCATGCTATCCGAAGCTATGCAAAGAGAAAACCGTGCCTAATTACAAGCCATTTCTCAGAAAAAGGAATGAAATAGCATACAGTGAAGAAACAGAAACAAACAAGAGCTATGAAGAACTTATCCGTGCTTGACTGATATCATCATCCGAATTAAGCAACTTCTCCCAATCAACTTCCTCCTCTTCATCCTTCTGCCTCAAAACCTCCAATATCTTTCTAACTTTATCCTTGGCCCTTTCACTTCCCATTTCCTCAACTTGTATCAACAGCTCCTCCGCAGCAGCCTCTTTTGCCAACCCTTTAAACCTAAGGCCACCATGACTAAGTCCATATAATGCAGCAAGACAATTCTCACGAGTCGACTCCGATTCAAACTCTCCCTTTCTCAACATACATACAAAACACTCCACTGCACCCCCATCAAGCATTGCTGCTCTCCCTTCAGAGCTCGCAGCCAGGTTACAAAGTATCAACAGAATCCGACCCATCATATGACCCGTTTTAACCATGCCTAGTAATGCCTGAACCGCCCCGAGTTTCACCAATTTAGCCCTGTTACTCTGAACTAAAGTGAGGTGATATAGAGCCAGAGCCGAATCATGCCTAGTTCGTTCCGATTCAGATCGAAGGGCATGAAGAAGTGGAGGCAGAGCTCCTAATACCCCAATTGCAGTTTTGTTCTGATCATCTAACGCTAAACTGAAAAGTGCACCAGCAACATGTTCCTGTGATTCTTGGAATCCACTTTT</gDNA_template>
            <first_frame> Q  S  N  Q  V  I  E  T  K  K  M  T  I  Q  S  V  M  K  N  L  S  K  L  L  A  C  K  S  Q  H  *  G  N  K  R  E  W  K  G  *  A  G  F  R  S  Y  T  L  T  Y  P  S  V  K  I  L  E  Q  L  *  L  L  L  M  H  *  K  S  S  V  K  I  L  V  Q  K  L  *  P  S  Q  *  H  H  T  S  H  Q  S  K  D  C  V  N  G  T  L  S  S  F  L  L  S  L  F  E  H  Q  D  A  Q  K  *  K  T  T  L  E  F  I  A  F  A  L  Q  Q  C  L  L  Q  C  R  P  *  R  N  M  R  I  T  I  L  *  Q  L  P  Q  L  Q  Q  S  I  N  S  S  I  N  T  K  L  L  D  S  G  L  W  K  P  R  T  V  H  R  I  S  L  R  H  T  R  K  *  K  *  H  C  L  K  S  I  R  R  Q  *  V  H  V  K  D  S  L  F  S  P  K  T  K  T  H  C  S  E  S  F  F  T  P  P  T  L  F  T  M  S  T  V  T  *  P  Q  K  T  R  R  A  K  P  K  P  K  S  C  Y  P  K  L  C  K  E  K  T  V  P  N  Y  K  P  F  L  R  K  R  N  E  I  A  Y  S  E  E  T  E  T  N  K  S  Y  E  E  L  I  R  A  *  L  I  S  S  S  E  L  S  N  F  S  Q  S  T  S  S  S  S  S  F  C  L  K  T  S  N  I  F  L  T  L  S  L  A  L  S  L  P  I  S  S  T  C  I  N  S  S  S  A  A  A  S  F  A  N  P  L  N  L  R  P  P  *  L  S  P  Y  N  A  A  R  Q  F  S  R  V  D  S  D  S  N  S  P  F  L  N  I  H  T  K  H  S  T  A  P  P  S  S  I  A  A  L  P  S  E  L  A  A  R  L  Q  S  I  N  R  I  R  P  I  I  *  P  V  L  T  M  P  S  N  A  *  T  A  P  S  F  T  N  L  A  L  L  L  *  T  K  V  R  *  Y  R  A  R  A  E  S  C  L  V  R  S  D  S  D  R  R  A  *  R  S  G  G  R  A  P  N  T  P  I  A  V  L  F  *  S  S  N  A  K  L  K  S  A  P  A  T  C  S  C  D  S  W  N  P  L   </first_frame>
            <second_frame>  N  R  T  K  *  L  K  R  K  K  *  Q  Y  N  L  *  *  K  I  F  Q  N  C  W  H  V  K  V  S  I  K  E  I  K  E  N  G  R  A  K  Q  G  S  E  V  I  H  *  L  I  P  V  *  K  Y  L  S  N  C  S  Y  C  S  C  T  K  S  P  V  *  K  F  *  C  R  N  C  N  L  P  S  S  T  T  H  H  I  R  V  K  I  V  S  M  V  H  S  L  H  S  C  F  H  C  L  S  I  K  M  L  K  N  E  K  Q  L  W  S  S  L  H  L  L  C  S  N  V  Y  C  N  A  D  L  K  E  T  *  E  *  Q  F  S  N  N  F  R  S  C  S  N  Q  S  T  P  A  *  I  P  N  Y  *  T  A  A  C  G  S  H  E  Q  C  I  E  *  A  S  G  T  Q  E  S  E  N  S  I  A  *  R  V  L  G  D  N  E  F  M  L  K  T  A  S  F  L  Q  K  L  K  H  T  V  Q  N  L  S  L  H  L  Q  H  Y  L  P  C  Q  L  S  H  D  L  R  R  H  D  E  Q  N  Q  N  Q  N  H  A  I  R  S  Y  A  K  R  K  P  C  L  I  T  S  H  F  S  E  K  G  M  K  *  H  T  V  K  K  Q  K  Q  T  R  A  M  K  N  L  S  V  L  D  *  Y  H  H  P  N  *  A  T  S  P  N  Q  L  P  P  L  H  P  S  A  S  K  P  P  I  S  F  *  L  Y  P  W  P  F  H  F  P  F  P  Q  L  V  S  T  A  P  P  Q  Q  P  L  L  P  T  L  *  T  *  G  H  H  D  *  V  H  I  M  Q  Q  D  N  S  H  E  S  T  P  I  Q  T  L  P  F  S  T  Y  I  Q  N  T  P  L  H  P  H  Q  A  L  L  L  S  L  Q  S  S  Q  P  G  Y  K  V  S  T  E  S  D  P  S  Y  D  P  F  *  P  C  L  V  M  P  E  P  P  R  V  S  P  I  *  P  C  Y  S  E  L  K  *  G  D  I  E  P  E  P  N  H  A  *  F  V  P  I  Q  I  E  G  H  E  E  V  E  A  E  L  L  I  P  Q  L  Q  F  C  S  D  H  L  T  L  N  *  K  V  H  Q  Q  H  V  P  V  I  L  G  I  H  F  </second_frame>
            <third_frame>   I  E  P  S  N  *  N  E  K  N  D  N  T  I  C  N  E  K  S  F  K  I  V  G  M  *  K  S  A  L  R  K  *  K  R  M  E  G  L  S  R  V  Q  K  L  Y  I  N  L  S  Q  C  K  N  T  *  A  I  V  A  I  A  H  A  L  K  V  Q  C  K  N  F  S  A  E  I  V  T  F  P  V  A  P  H  I  T  S  E  *  R  L  C  Q  W  Y  T  L  F  I  L  A  F  T  V  *  A  S  R  C  S  K  M  K  N  N  S  G  V  H  C  I  C  S  A  A  M  F  I  A  M  Q  T  L  K  K  H  E  N  N  N  S  L  T  T  S  A  V  A  A  I  N  Q  L  Q  H  K  Y  Q  I  T  R  Q  R  L  V  E  A  T  N  S  A  *  N  K  P  Q  A  H  K  K  V  K  I  A  L  L  E  E  Y  *  E  T  M  S  S  C  *  R  Q  P  L  F  S  K  N  *  N  T  L  F  R  I  F  L  Y  T  S  N  I  I  Y  H  V  N  C  H  M  T  S  E  D  T  T  S  K  T  K  T  K  I  M  L  S  E  A  M  Q  R  E  N  R  A  *  L  Q  A  I  S  Q  K  K  E  *  N  S  I  Q  *  R  N  R  N  K  Q  E  L  *  R  T  Y  P  C  L  T  D  I  I  I  R  I  K  Q  L  L  P  I  N  F  L  L  F  I  L  L  P  Q  N  L  Q  Y  L  S  N  F  I  L  G  P  F  T  S  H  F  L  N  L  Y  Q  Q  L  L  R  S  S  L  F  C  Q  P  F  K  P  K  A  T  M  T  K  S  I  *  C  S  K  T  I  L  T  S  R  L  R  F  K  L  S  L  S  Q  H  T  Y  K  T  L  H  C  T  P  I  K  H  C  C  S  P  F  R  A  R  S  Q  V  T  K  Y  Q  Q  N  P  T  H  H  M  T  R  F  N  H  A  *  *  C  L  N  R  P  E  F  H  Q  F  S  P  V  T  L  N  *  S  E  V  I  *  S  Q  S  R  I  M  P  S  S  F  R  F  R  S  K  G  M  K  K  W  R  Q  S  S  *  Y  P  N  C  S  F  V  L  I  I  *  R  *  T  E  K  C  T  S  N  M  F  L  *  F  L  E  S  T  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36208" stop="36441"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVLGDNEFMLKTASFLQKLKHTVQNLSLHLQHYLPCQLSHDLRRHDEQNQNQNHAIRSYAKRKPCLITSHFSEKGMK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36479" stop="36700"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTYPCLTDIIIRIKQLLPINFLLFILLPQNLQYLSNFILGPFTSHFLNLYQQLLRSSLFCQPFKPKATMTKSI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35963" stop="36163"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASRCSKMKNNSGVHCICSAAMFIAMQTLKKHENNNSLTTSAVAAINQLQHKYQITRQRLVEATNSA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="38129" PGL_stop="37079"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38129" e_stop="37079"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="38129" e_stop="37079" e_length="1051"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38129" stop="37079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U581762" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACGAGTACAGAGCTCTCAGTACTAAACATCCAATTTTCTGTTTCACTATCAGCTTCCTCTCTCCAAATCTCAGTCTGTCATAATGAAGATGTACACTTTTGCTCATCTCCTCAACAGGCTCAAAGTTGAATTTTTGAAACCTTTTGTTTTCATTCATATTTGAACCTCAAAGATTGAATCTTGAAACTTCTTTTTTTTTTTCTTCATTGAAATGGGTACTAGCAAGCAAAGATGGAGAATTTCATTTCACAAGTCTCCATCAAAACAACCTCCTATTCCTATAGAATTTGTCTGTCCTATTTCTGGTTCTCTCATGGCTGACCCTGTAATCGTTTCTTCAGGCCATACTTTTGAGCGTCATTGTGTTCATGCCTGCAAATCACTTTCTTTTACCCCTGTTCTTCCTGATGGCTCTGTTCCTGATTTCTCTACTGTGATCCCTAACTTAGCTCTCAAGTCTACAATCCTCAATTTTTGCCGTTCTTCTTTTCTTGACCCACCAAAACCCATCAATTTTCTCACAGCTGAAAATCTCGTTTTCACATTGAAGGCCACCCGAAAACCCCAAGATGCTACAAGATTTAATGGCGTCCGGGTTATGCAGACGGAAACTGAACTGAACCGGGTACCGAGTCACATATCAATGAGTTCAGAGGAATCTGTGACTCCTAGAAGTGGACCCACTTATTACTCTTCGTCGTCAGCCTCTGACTTTGAAACCCTAAACCCAAATTCCTTTGAAGAAGATGAACTACTTGTGAAATTGAAGAGTTCCCAAATATCTGAACAAGAAGAAGCTGTCATCTCGTTTCGAAAATTGACCCGAACCCGTGAAGAAACCCGGTTCCAGTTATGCACTCCGCGTATACTTTCAGCTCTACGTGTACTCATCACTTCAAGGTATGTTTCTGTACAAGTAAATTCAGTAGCGGCATTGGTAAATTTGTCGTTAGAGAATCGAAACAAGGTGAAAATTTTACGGTCTGGAATTGTTCCGTCTTTGATTGACGTGTTGAAAAGTGGATTCCAAGAATCACAGGAACATGTTGCT</gDNA_template>
            <first_frame> T  S  T  E  L  S  V  L  N  I  Q  F  S  V  S  L  S  A  S  S  L  Q  I  S  V  C  H  N  E  D  V  H  F  C  S  S  P  Q  Q  A  Q  S  *  I  F  E  T  F  C  F  H  S  Y  L  N  L  K  D  *  I  L  K  L  L  F  F  F  L  H  *  N  G  Y  *  Q  A  K  M  E  N  F  I  S  Q  V  S  I  K  T  T  S  Y  S  Y  R  I  C  L  S  Y  F  W  F  S  H  G  *  P  C  N  R  F  F  R  P  Y  F  *  A  S  L  C  S  C  L  Q  I  T  F  F  Y  P  C  S  S  *  W  L  C  S  *  F  L  Y  C  D  P  *  L  S  S  Q  V  Y  N  P  Q  F  L  P  F  F  F  S  *  P  T  K  T  H  Q  F  S  H  S  *  K  S  R  F  H  I  E  G  H  P  K  T  P  R  C  Y  K  I  *  W  R  P  G  Y  A  D  G  N  *  T  E  P  G  T  E  S  H  I  N  E  F  R  G  I  C  D  S  *  K  W  T  H  L  L  L  F  V  V  S  L  *  L  *  N  P  K  P  K  F  L  *  R  R  *  T  T  C  E  I  E  E  F  P  N  I  *  T  R  R  S  C  H  L  V  S  K  I  D  P  N  P  *  R  N  P  V  P  V  M  H  S  A  Y  T  F  S  S  T  C  T  H  H  F  K  V  C  F  C  T  S  K  F  S  S  G  I  G  K  F  V  V  R  E  S  K  Q  G  E  N  F  T  V  W  N  C  S  V  F  D  *  R  V  E  K  W  I  P  R  I  T  G  T  C  C  </first_frame>
            <second_frame>  R  V  Q  S  S  Q  Y  *  T  S  N  F  L  F  H  Y  Q  L  P  L  S  K  S  Q  S  V  I  M  K  M  Y  T  F  A  H  L  L  N  R  L  K  V  E  F  L  K  P  F  V  F  I  H  I  *  T  S  K  I  E  S  *  N  F  F  F  F  F  F  I  E  M  G  T  S  K  Q  R  W  R  I  S  F  H  K  S  P  S  K  Q  P  P  I  P  I  E  F  V  C  P  I  S  G  S  L  M  A  D  P  V  I  V  S  S  G  H  T  F  E  R  H  C  V  H  A  C  K  S  L  S  F  T  P  V  L  P  D  G  S  V  P  D  F  S  T  V  I  P  N  L  A  L  K  S  T  I  L  N  F  C  R  S  S  F  L  D  P  P  K  P  I  N  F  L  T  A  E  N  L  V  F  T  L  K  A  T  R  K  P  Q  D  A  T  R  F  N  G  V  R  V  M  Q  T  E  T  E  L  N  R  V  P  S  H  I  S  M  S  S  E  E  S  V  T  P  R  S  G  P  T  Y  Y  S  S  S  S  A  S  D  F  E  T  L  N  P  N  S  F  E  E  D  E  L  L  V  K  L  K  S  S  Q  I  S  E  Q  E  E  A  V  I  S  F  R  K  L  T  R  T  R  E  E  T  R  F  Q  L  C  T  P  R  I  L  S  A  L  R  V  L  I  T  S  R  Y  V  S  V  Q  V  N  S  V  A  A  L  V  N  L  S  L  E  N  R  N  K  V  K  I  L  R  S  G  I  V  P  S  L  I  D  V  L  K  S  G  F  Q  E  S  Q  E  H  V  A </second_frame>
            <third_frame>   E  Y  R  A  L  S  T  K  H  P  I  F  C  F  T  I  S  F  L  S  P  N  L  S  L  S  *  *  R  C  T  L  L  L  I  S  S  T  G  S  K  L  N  F  *  N  L  L  F  S  F  I  F  E  P  Q  R  L  N  L  E  T  S  F  F  F  S  S  L  K  W  V  L  A  S  K  D  G  E  F  H  F  T  S  L  H  Q  N  N  L  L  F  L  *  N  L  S  V  L  F  L  V  L  S  W  L  T  L  *  S  F  L  Q  A  I  L  L  S  V  I  V  F  M  P  A  N  H  F  L  L  P  L  F  F  L  M  A  L  F  L  I  S  L  L  *  S  L  T  *  L  S  S  L  Q  S  S  I  F  A  V  L  L  F  L  T  H  Q  N  P  S  I  F  S  Q  L  K  I  S  F  S  H  *  R  P  P  E  N  P  K  M  L  Q  D  L  M  A  S  G  L  C  R  R  K  L  N  *  T  G  Y  R  V  T  Y  Q  *  V  Q  R  N  L  *  L  L  E  V  D  P  L  I  T  L  R  R  Q  P  L  T  L  K  P  *  T  Q  I  P  L  K  K  M  N  Y  L  *  N  *  R  V  P  K  Y  L  N  K  K  K  L  S  S  R  F  E  N  *  P  E  P  V  K  K  P  G  S  S  Y  A  L  R  V  Y  F  Q  L  Y  V  Y  S  S  L  Q  G  M  F  L  Y  K  *  I  Q  *  R  H  W  *  I  C  R  *  R  I  E  T  R  *  K  F  Y  G  L  E  L  F  R  L  *  L  T  C  *  K  V  D  S  K  N  H  R  N  M  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37945" stop="37079"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>867</number_coding_nucleotides>
                  <number_encoded_amino_acids>289</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFFFFFFIEMGTSKQRWRISFHKSPSKQPPIPIEFVCPISGSLMADPVIVSSGHTFERHCVHACKSLSFTPVLPDGSVPDFSTVIPNLALKSTILNFCRSSFLDPPKPINFLTAENLVFTLKATRKPQDATRFNGVRVMQTETELNRVPSHISMSSEESVTPRSGPTYYSSSSASDFETLNPNSFEEDELLVKLKSSQISEQEEAVISFRKLTRTREETRFQLCTPRILSALRVLITSRYVSVQVNSVAALVNLSLENRNKVKILRSGIVPSLIDVLKSGFQESQEHVA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="43267" PGL_stop="44122"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43267" e_stop="43406"/>
            <exon e_start="43513" e_stop="44122"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.947" acc_prob="1.000" e_score="0.993"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="43267" e_stop="43406" e_length="140"/>
          </exon>
          <intron i_serial="1" don_prob="0.947" acc_prob="1.000">
            <gDNA_intron_boundary i_start="43407" i_stop="43512" i_length="106"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="43513" e_stop="44122" e_length="610"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43267" stop="43406"/>
              <exon start="43513" stop="44122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U585267" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAACTAGAAGAACAAAAATACACGAAAGAAGAAAATGGAAGGAGGAACAGAAGCCTATCCAGATTTAGGTAGACATTGCCAACTATCTGATTGCCATCAACTCGATTTTCTCCCTTTTACCTGCCATGCCTGTTTAAAG : GTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGCTGTTGCTAAAGGAACCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGAATGGGAAAGATTGTGGGAATAAAAGTCGTGCCTCATCTCCAAGCCCTGCGAACCCTTCTGTGAAAGCTTGTTGATCGTTTCACAGCACATTACTATTCATTTGTCTTTTGTAATTACATTATTTTATGGAAAACAATGTTGTTCTATTTTCAATTTCTCCCTCCCTTCTATGATAAAACAACGAATTTAAGAATGACATAACAATTCGGAATCATATAATCT</gDNA_template>
            <first_frame> A  T  R  R  T  K  I  H  E  R  R  K  W  K  E  E  Q  K  P  I  Q  I  *  V  D  I  A  N  Y  L  I  A  I  N  S  I  F  S  L  L  P  A  M  P  V  *  R :   Y  F  V  W  N  I  D  H  A  S  L  M  N  A  Q  N  L  T  L  T  A  E  S  F  W  F  A  K  F  V  L  C  P  W  K  L  P  A  V  K  L  K  T  T  K  Q  Y  Y  K  N  T  R  N  L  G  I  V  T  L  R  R  R  R  R  N  L  P  V  L  S  K  D  A  R  G  F  *  P  S  Q  T  L  A  L  A  R  Y  A  G  F  K  F  A  S  D  T  G  S  L  L  I  T  P  V  T  P  L  L  H  H  H  S  C  C  *  R  N  P  I  T  S  F  *  L  L  C  L  Q  G  M  G  K  I  V  G  I  K  V  V  P  H  L  Q  A  L  R  T  L  L  *  K  L  V  D  R  F  T  A  H  Y  Y  S  F  V  F  C  N  Y  I  I  L  W  K  T  M  L  F  Y  F  Q  F  L  P  P  F  Y  D  K  T  T  N  L  R  M  T  *  Q  F  G  I  I  *  S </first_frame>
            <second_frame>  Q  L  E  E  Q  K  Y  T  K  E  E  N  G  R  R  N  R  S  L  S  R  F  R  *  T  L  P  T  I  *  L  P  S  T  R  F  S  P  F  Y  L  P  C  L  F  K   : G  I  L  C  G  T  *  I  M  Q  V  S  *  M  P  K  I  *  L  *  Q  P  N  R  F  G  L  R  N  L  F  Y  V  H  G  N  Y  R  L  *  S  *  R  P  Q  S  N  I  T  K  T  R  G  I  W  G  L  *  P  *  E  E  E  E  E  T  Y  L  S  C  Q  K  M  Q  G  D  F  D  L  L  K  H  *  H  L  Q  D  M  P  D  S  S  L  P  Q  T  Q  V  P  C  *  S  R  L  *  P  H  F  F  I  I  T  A  V  A  K  G  T  Q  *  Q  V  F  D  C  F  A  C  K  E  W  E  R  L  W  E  *  K  S  C  L  I  S  K  P  C  E  P  F  C  E  S  L  L  I  V  S  Q  H  I  T  I  H  L  S  F  V  I  T  L  F  Y  G  K  Q  C  C  S  I  F  N  F  S  L  P  S  M  I  K  Q  R  I  *  E  *  H  N  N  S  E  S  Y  N   </second_frame>
            <third_frame>   N  *  K  N  K  N  T  R  K  K  K  M  E  G  G  T  E  A  Y  P  D  L  G  R  H  C  Q  L  S  D  C  H  Q  L  D  F  L  P  F  T  C  H  A  C  L  K  :  V  F  C  V  E  H  R  S  C  K  S  H  E  C  P  K  S  D  F  N  S  R  I  V  L  V  C  E  I  C  S  M  S  M  E  T  T  G  C  K  V  E  D  H  K  A  I  L  Q  K  H  E  E  S  G  D  C  D  P  K  K  K  K  K  K  P  T  C  P  V  K  R  C  K  G  I  L  T  F  S  N  T  S  T  C  K  I  C  R  I  Q  V  C  L  R  H  R  F  P  A  D  H  A  C  N  P  T  S  S  S  S  Q  L  L  L  K  E  P  N  N  K  F  L  T  A  L  L  A  R  N  G  K  D  C  G  N  K  S  R  A  S  S  P  S  P  A  N  P  S  V  K  A  C  *  S  F  H  S  T  L  L  F  I  C  L  L  *  L  H  Y  F  M  E  N  N  V  V  L  F  S  I  S  P  S  L  L  *  *  N  N  E  F  K  N  D  I  T  I  R  N  H  I  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43275" stop="43406"/>
                    <exon start="43513" stop="43974"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNKNTRKKKMEGGTEAYPDLGRHCQLSDCHQLDFLPFTCHACLKVFCVEHRSCKSHECPKSDFNSRIVLVCEICSMSMETTGCKVEDHKAILQKHEESGDCDPKKKKKKPTCPVKRCKGILTFSNTSTCKICRIQVCLRHRFPADHACNPTSSSSQLLLKEPNNKFLTALLARNGKDCGNKSRASSPSPANPSVKAC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="48116" PGL_stop="44090"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48116" e_stop="48005"/>
            <exon e_start="47909" e_stop="47604"/>
            <exon e_start="47447" e_stop="47398"/>
            <exon e_start="47277" e_stop="46775"/>
            <exon e_start="45951" e_stop="45871"/>
            <exon e_start="44734" e_stop="44672"/>
            <exon e_start="44431" e_stop="44090"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.946" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.874" e_score="0.837"/>
          <exon-intron don_prob="0.997" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.925" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48116" e_stop="48005" e_length="112"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.946">
            <gDNA_intron_boundary i_start="48004" i_stop="47910" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="0.837">
            <gDNA_exon_boundary e_start="47909" e_stop="47604" e_length="306"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.874">
            <gDNA_intron_boundary i_start="47603" i_stop="47448" i_length="156"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="47447" e_stop="47398" e_length="50"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.974">
            <gDNA_intron_boundary i_start="47397" i_stop="47278" i_length="120"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="47277" e_stop="46775" e_length="503"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.981">
            <gDNA_intron_boundary i_start="46774" i_stop="45952" i_length="823"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="45951" e_stop="45871" e_length="81"/>
          </exon>
          <intron i_serial="5" don_prob="0.971" acc_prob="0.998">
            <gDNA_intron_boundary i_start="45870" i_stop="44735" i_length="1136"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="44734" e_stop="44672" e_length="63"/>
          </exon>
          <intron i_serial="6" don_prob="0.986" acc_prob="0.925">
            <gDNA_intron_boundary i_start="44671" i_stop="44432" i_length="240"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="44431" e_stop="44090" e_length="342"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48116" stop="48005"/>
              <exon start="47909" stop="47604"/>
              <exon start="47447" stop="47398"/>
              <exon start="47277" stop="46775"/>
              <exon start="45951" stop="45871"/>
              <exon start="44734" stop="44672"/>
              <exon start="44431" stop="44090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U581972" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GACGTGTCATGGAGACCAGTAGACAAAATAAATGAGGAAAAAGAGGAGGGACAATTCTTATAGCGACCTTGCTCGCTGAGTTTTGGAGTATAGACATATGGAGTATAACCAG : ATTTAGCTGTGCATAAGTTTTGACCATCTCAAATGTCAAGGCCACAGGTCACCATCACTTTGGGACGCTCGGGTCAAGTAAGCTTTCTCCACTGTTTTTCGCTTTATGGATCTGTTTGGAGGTTTCTTAATTGTGGGTTCAATTTTTTCTTAATTTGTTACTGTTAAACTTGCAGAAAGTGGTTAAGCGATCATCAGCTTCTCAGGGTAATGGTTTTAGTCAACAGACATTGTCAAGAGGCAAAAGGTCATTAGGAGAGACCTATAGGACTGACTCTGAGGATCCTACAAAATCCCTTCGTAAACG : TGTGCGAGGGGATAAAGATGCAGGAGGTTCCAGATATGGCAGACAGAATG : GTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAAGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGCTGGTGTTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGCAGGATATGACCTCATCGACTCTTCTCAGCTAAAAGTCCTTACCCCTGTGACCATGAGGTCAGCACTGGGTGCCAGGAATCCATTGACAGGTCTTCCCTCTGCAAATGGAGGCATGCTACACAGACCATATCCT : GATCAACCTCCTTTGACCGTTGCCAGTCTATTAAATTCGCTCGGTTTGGGGAAATACACTATCCACTTTCAAGCCGAGGAG : GTAGACATGGCTGCACTGAAGCAAATGGGGGACCGTGACCTGAAGGAATTGGGGATACCAATG : GGACCCAGGAAGAAGATTCTCTTGGCTATGCTTTCCCAAACTTAGAAGACCTGTGTAGTATGGTAGTTATATTTATTCAATTCAATGCTCCTGTTTCTAAGCTGAAGTTATCAAGCTGGCTGTTCTTGGGAAATGTATATAAAGGGTAGCGGTATAATGCTGGAGTATTTGGCTGATATTTGTTGTATAATAGACAGTATATAACAGTGAAATTATCTCTTTCGTTTTTGGGAGAGGCTGATCTTTTTGTGAATTTATTTTAGAGAACTGTTCAACATGAGATGCGGTTTGAAGTTATTCATATAGAGAAGATTATATGATTCCGAATTGTTATGTCATTCT</gDNA_template>
            <first_frame> D  V  S  W  R  P  V  D  K  I  N  E  E  K  E  E  G  Q  F  L  *  R  P  C  S  L  S  F  G  V  *  T  Y  G  V  *  P   : D  L  A  V  H  K  F  *  P  S  Q  M  S  R  P  Q  V  T  I  T  L  G  R  S  G  Q  V  S  F  L  H  C  F  S  L  Y  G  S  V  W  R  F  L  N  C  G  F  N  F  F  L  I  C  Y  C  *  T  C  R  K  W  L  S  D  H  Q  L  L  R  V  M  V  L  V  N  R  H  C  Q  E  A  K  G  H  *  E  R  P  I  G  L  T  L  R  I  L  Q  N  P  F  V  N   : V  C  E  G  I  K  M  Q  E  V  P  D  M  A  D  R  M  :  V  H  A  L  G  K  M  T  S  D  *  N  *  C  T  E  E  G  K  G  K  F  I  C  R  L  K  K  E  K  R  S  S  I  R  G  *  Q  E  V  F  N  L  Q  N  N  L  T  R  G  L  S  P  A  A  N  R  R  Q  E  L  A  N  C  F  R  *  R  Q  L  D  P  P  I  H  H  K  L  L  L  V  L  D  Q  D  P  L  I  D  L  Q  T  I  L  K  K  S  L  L  Q  G  I  S  L  Q  L  S  M  Y  R  Q  *  G  Q  P  K  L  Q  E  W  F  I  W  Q  D  M  T  S  S  T  L  L  S  *  K  S  L  P  L  *  P  *  G  Q  H  W  V  P  G  I  H  *  Q  V  F  P  L  Q  M  E  A  C  Y  T  D  H  I  L :   I  N  L  L  *  P  L  P  V  Y  *  I  R  S  V  W  G  N  T  L  S  T  F  K  P  R  R :   *  T  W  L  H  *  S  K  W  G  T  V  T  *  R  N  W  G  Y  Q  W :   D  P  G  R  R  F  S  W  L  C  F  P  K  L  R  R  P  V  *  Y  G  S  Y  I  Y  S  I  Q  C  S  C  F  *  A  E  V  I  K  L  A  V  L  G  K  C  I  *  R  V  A  V  *  C  W  S  I  W  L  I  F  V  V  *  *  T  V  Y  N  S  E  I  I  S  F  V  F  G  R  G  *  S  F  C  E  F  I  L  E  N  C  S  T  *  D  A  V  *  S  Y  S  Y  R  E  D  Y  M  I  P  N  C  Y  V  I   </first_frame>
            <second_frame>  T  C  H  G  D  Q  *  T  K  *  M  R  K  K  R  R  D  N  S  Y  S  D  L  A  R  *  V  L  E  Y  R  H  M  E  Y  N  Q  :  I  *  L  C  I  S  F  D  H  L  K  C  Q  G  H  R  S  P  S  L  W  D  A  R  V  K  *  A  F  S  T  V  F  R  F  M  D  L  F  G  G  F  L  I  V  G  S  I  F  S  *  F  V  T  V  K  L  A  E  S  G  *  A  I  I  S  F  S  G  *  W  F  *  S  T  D  I  V  K  R  Q  K  V  I  R  R  D  L  *  D  *  L  *  G  S  Y  K  I  P  S  *  T  :  C  A  R  G  *  R  C  R  R  F  Q  I  W  Q  T  E  W :   C  T  H  W  E  K  *  P  P  T  E  T  N  A  Q  K  K  A  K  G  N  S  S  A  D  *  R  K  K  K  G  A  A  *  E  D  D  K  K  C  S  I  C  R  T  I  S  Q  E  A  C  H  Q  Q  P  T  V  V  R  S  *  R  I  A  S  D  R  G  N  *  I  L  L  Y  I  T  N  C  C  W  C  *  I  K  I  P  L  *  T  C  K  R  F  *  R  S  L  F  F  K  E  Y  H  C  S  S  A  C  T  V  S  K  A  S  R  S  F  K  N  G  S  Y  G  R  I  *  P  H  R  L  F  S  A  K  S  P  Y  P  C  D  H  E  V  S  T  G  C  Q  E  S  I  D  R  S  S  L  C  K  W  R  H  A  T  Q  T  I  S   : *  S  T  S  F  D  R  C  Q  S  I  K  F  A  R  F  G  E  I  H  Y  P  L  S  S  R  G   : G  R  H  G  C  T  E  A  N  G  G  P  *  P  E  G  I  G  D  T  N   : G  T  Q  E  E  D  S  L  G  Y  A  F  P  N  L  E  D  L  C  S  M  V  V  I  F  I  Q  F  N  A  P  V  S  K  L  K  L  S  S  W  L  F  L  G  N  V  Y  K  G  *  R  Y  N  A  G  V  F  G  *  Y  L  L  Y  N  R  Q  Y  I  T  V  K  L  S  L  S  F  L  G  E  A  D  L  F  V  N  L  F  *  R  T  V  Q  H  E  M  R  F  E  V  I  H  I  E  K  I  I  *  F  R  I  V  M  S  F  </second_frame>
            <third_frame>   R  V  M  E  T  S  R  Q  N  K  *  G  K  R  G  G  T  I  L  I  A  T  L  L  A  E  F  W  S  I  D  I  W  S  I  T  R :   F  S  C  A  *  V  L  T  I  S  N  V  K  A  T  G  H  H  H  F  G  T  L  G  S  S  K  L  S  P  L  F  F  A  L  W  I  C  L  E  V  S  *  L  W  V  Q  F  F  L  N  L  L  L  L  N  L  Q  K  V  V  K  R  S  S  A  S  Q  G  N  G  F  S  Q  Q  T  L  S  R  G  K  R  S  L  G  E  T  Y  R  T  D  S  E  D  P  T  K  S  L  R  K  R :   V  R  G  D  K  D  A  G  G  S  R  Y  G  R  Q  N   : G  A  R  I  G  K  N  D  L  R  L  K  L  M  H  R  R  R  Q  R  E  I  H  L  Q  I  E  E  R  K  K  E  Q  H  K  R  M  T  R  S  V  Q  S  A  E  Q  S  H  K  R  L  V  T  S  S  Q  P  S  S  G  A  S  E  L  L  Q  I  E  A  I  R  S  S  Y  T  S  Q  T  A  A  G  V  R  S  R  S  P  Y  R  L  A  N  D  S  K  E  V  S  S  S  R  N  I  T  A  A  Q  H  V  P  S  V  R  P  A  E  A  S  R  M  V  H  M  A  G  Y  D  L  I  D  S  S  Q  L  K  V  L  T  P  V  T  M  R  S  A  L  G  A  R  N  P  L  T  G  L  P  S  A  N  G  G  M  L  H  R  P  Y  P  :  D  Q  P  P  L  T  V  A  S  L  L  N  S  L  G  L  G  K  Y  T  I  H  F  Q  A  E  E  :  V  D  M  A  A  L  K  Q  M  G  D  R  D  L  K  E  L  G  I  P  M  :  G  P  R  K  K  I  L  L  A  M  L  S  Q  T  *  K  T  C  V  V  W  *  L  Y  L  F  N  S  M  L  L  F  L  S  *  S  Y  Q  A  G  C  S  W  E  M  Y  I  K  G  S  G  I  M  L  E  Y  L  A  D  I  C  C  I  I  D  S  I  *  Q  *  N  Y  L  F  R  F  W  E  R  L  I  F  L  *  I  Y  F  R  E  L  F  N  M  R  C  G  L  K  L  F  I  *  R  R  L  Y  D  S  E  L  L  C  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47779" stop="47604"/>
                    <exon start="47447" stop="47398"/>
                    <exon start="47277" stop="46775"/>
                    <exon start="45951" stop="45871"/>
                    <exon start="44734" stop="44672"/>
                    <exon start="44431" stop="44387"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>915</number_coding_nucleotides>
                  <number_encoded_amino_acids>305</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LWVQFFLNLLLLNLQKVVKRSSASQGNGFSQQTLSRGKRSLGETYRTDSEDPTKSLRKRVRGDKDAGGSRYGRQNGARIGKNDLRLKLMHRRRQREIHLQIEERKKEQHKRMTRSVQSAEQSHKRLVTSSQPSSGASELLQIEAIRSSYTSQTAAGVRSRSPYRLANDSKEVSSSRNITAAQHVPSVRPAEASRMVHMAGYDLIDSSQLKVLTPVTMRSALGARNPLTGLPSANGGMLHRPYPDQPPLTVASLLNSLGLGKYTIHFQAEEVDMAALKQMGDRDLKELGIPMGPRKKILLAMLSQT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="48023" e_stop="48005"/>
            <exon e_start="47909" e_stop="47833"/>
            <exon e_start="47734" e_stop="47398"/>
            <exon e_start="47277" e_stop="46908"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.946" e_score="0.947"/>
          <exon-intron don_prob="0.991" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.974" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="48023" e_stop="48005" e_length="19"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.946">
            <gDNA_intron_boundary i_start="48004" i_stop="47910" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47909" e_stop="47833" e_length="77"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.996">
            <gDNA_intron_boundary i_start="47832" i_stop="47735" i_length="98"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="47734" e_stop="47398" e_length="337"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.974">
            <gDNA_intron_boundary i_start="47397" i_stop="47278" i_length="120"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="47277" e_stop="46908" e_length="370"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48023" stop="48005"/>
              <exon start="47909" stop="47833"/>
              <exon start="47734" stop="47398"/>
              <exon start="47277" stop="46908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U581973" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACATATGGAGTATAACCAG : ATTTAGCTGTGCATAAGTTTTGACCATCTCAAATGTCAAGGCCACAGGTCACCATCACTTTGGGACGCTCGGGTCAA : AAAGTGGTTAAGCGATCATCAGCTTCTCAGGGTAATGGTTTTAGTCAACAGACATTGTCAAGAGGCAAAAGGTCATTAGGAGAGACCTATAGGACTGACTCTGAGGATCCTACAAAATCCCTTCGTAAACGGTAAAATCTTTTGTTTGTTGTTCTGGTTGAGCTAATGTAGGTTGTATCTAATTTATTGTTTTCAGAATAATGGAAGGAATATAAAAAAACTATCAAAGTTAGAGTGGTAGTTTTGATTTTATTTGATAGTGGAAGTTTTGCTATTGTTTTTGCAAGTGTGCGAGGGGATAAAGATGCAGGAGGTTCCAGATATGGCAGACAGAATG : GTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAAGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGCTGGTGTTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGC</gDNA_template>
            <first_frame> T  Y  G  V  *  P   : D  L  A  V  H  K  F  *  P  S  Q  M  S  R  P  Q  V  T  I  T  L  G  R  S  G  Q  :  K  V  V  K  R  S  S  A  S  Q  G  N  G  F  S  Q  Q  T  L  S  R  G  K  R  S  L  G  E  T  Y  R  T  D  S  E  D  P  T  K  S  L  R  K  R  *  N  L  L  F  V  V  L  V  E  L  M  *  V  V  S  N  L  L  F  S  E  *  W  K  E  Y  K  K  T  I  K  V  R  V  V  V  L  I  L  F  D  S  G  S  F  A  I  V  F  A  S  V  R  G  D  K  D  A  G  G  S  R  Y  G  R  Q  N   : G  A  R  I  G  K  N  D  L  R  L  K  L  M  H  R  R  R  Q  R  E  I  H  L  Q  I  E  E  R  K  K  E  Q  H  K  R  M  T  R  S  V  Q  S  A  E  Q  S  H  K  R  L  V  T  S  S  Q  P  S  S  G  A  S  E  L  L  Q  I  E  A  I  R  S  S  Y  T  S  Q  T  A  A  G  V  R  S  R  S  P  Y  R  L  A  N  D  S  K  E  V  S  S  S  R  N  I  T  A  A  Q  H  V  P  S  V  R  P  A  E  A  S  R  M  V  H  M   </first_frame>
            <second_frame>  H  M  E  Y  N  Q  :  I  *  L  C  I  S  F  D  H  L  K  C  Q  G  H  R  S  P  S  L  W  D  A  R  V  K :   K  W  L  S  D  H  Q  L  L  R  V  M  V  L  V  N  R  H  C  Q  E  A  K  G  H  *  E  R  P  I  G  L  T  L  R  I  L  Q  N  P  F  V  N  G  K  I  F  C  L  L  F  W  L  S  *  C  R  L  Y  L  I  Y  C  F  Q  N  N  G  R  N  I  K  K  L  S  K  L  E  W  *  F  *  F  Y  L  I  V  E  V  L  L  L  F  L  Q  V  C  E  G  I  K  M  Q  E  V  P  D  M  A  D  R  M  :  V  H  A  L  G  K  M  T  S  D  *  N  *  C  T  E  E  G  K  G  K  F  I  C  R  L  K  K  E  K  R  S  S  I  R  G  *  Q  E  V  F  N  L  Q  N  N  L  T  R  G  L  S  P  A  A  N  R  R  Q  E  L  A  N  C  F  R  *  R  Q  L  D  P  P  I  H  H  K  L  L  L  V  L  D  Q  D  P  L  I  D  L  Q  T  I  L  K  K  S  L  L  Q  G  I  S  L  Q  L  S  M  Y  R  Q  *  G  Q  P  K  L  Q  E  W  F  I  W  </second_frame>
            <third_frame>   I  W  S  I  T  R :   F  S  C  A  *  V  L  T  I  S  N  V  K  A  T  G  H  H  H  F  G  T  L  G  S   : K  S  G  *  A  I  I  S  F  S  G  *  W  F  *  S  T  D  I  V  K  R  Q  K  V  I  R  R  D  L  *  D  *  L  *  G  S  Y  K  I  P  S  *  T  V  K  S  F  V  C  C  S  G  *  A  N  V  G  C  I  *  F  I  V  F  R  I  M  E  G  I  *  K  N  Y  Q  S  *  S  G  S  F  D  F  I  *  *  W  K  F  C  Y  C  F  C  K  C  A  R  G  *  R  C  R  R  F  Q  I  W  Q  T  E  W :   C  T  H  W  E  K  *  P  P  T  E  T  N  A  Q  K  K  A  K  G  N  S  S  A  D  *  R  K  K  K  G  A  A  *  E  D  D  K  K  C  S  I  C  R  T  I  S  Q  E  A  C  H  Q  Q  P  T  V  V  R  S  *  R  I  A  S  D  R  G  N  *  I  L  L  Y  I  T  N  C  C  W  C  *  I  K  I  P  L  *  T  C  K  R  F  *  R  S  L  F  F  K  E  Y  H  C  S  S  A  C  T  V  S  K  A  S  R  S  F  K  N  G  S  Y  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47533" stop="47398"/>
                    <exon start="47277" stop="46910"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>504</number_coding_nucleotides>
                  <number_encoded_amino_acids>168</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WKEYKKTIKVRVVVLILFDSGSFAIVFASVRGDKDAGGSRYGRQNGARIGKNDLRLKLMHRRRQREIHLQIEERKKEQHKRMTRSVQSAEQSHKRLVTSSQPSSGASELLQIEAIRSSYTSQTAAGVRSRSPYRLANDSKEVSSSRNITAAQHVPSVRPAEASRMVHM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="55378" PGL_stop="49946"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55378" e_stop="55056"/>
            <exon e_start="54485" e_stop="54373"/>
            <exon e_start="51513" e_stop="51464"/>
            <exon e_start="51333" e_stop="51262"/>
            <exon e_start="50612" e_stop="50552"/>
            <exon e_start="50341" e_stop="49946"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.959" e_score="0.994"/>
          <exon-intron don_prob="0.999" acc_prob="0.718" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.854" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.960" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="55378" e_stop="55056" e_length="323"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.959">
            <gDNA_intron_boundary i_start="55055" i_stop="54486" i_length="570"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="54485" e_stop="54373" e_length="113"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.718">
            <gDNA_intron_boundary i_start="54372" i_stop="51514" i_length="2859"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="51513" e_stop="51464" e_length="50"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="51463" i_stop="51334" i_length="130"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="51333" e_stop="51262" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.854">
            <gDNA_intron_boundary i_start="51261" i_stop="50613" i_length="649"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="50612" e_stop="50552" e_length="61"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.960">
            <gDNA_intron_boundary i_start="50551" i_stop="50342" i_length="210"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="50341" e_stop="49946" e_length="396"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55378" stop="55056"/>
              <exon start="54485" stop="54373"/>
              <exon start="51513" stop="51464"/>
              <exon start="51333" stop="51262"/>
              <exon start="50612" stop="50552"/>
              <exon start="50341" stop="49946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U577574" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCCGTTTATTAATTTATTTTAATTATAATTTTTCTTCAGATATTAGGTGAAAAGAAAAGGAGAGAACGGATAGTAATATATAAATATCAACGCTGTACGAAAGAGATTTTTTCCTTTCCGAAGTTGTGGTGGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA : TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG : GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG : GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG : GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG : ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTAGGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAACTGGAATCAATTTCCAAAAGCTGCTTTGTGAAGTTCAATCCCAGTCGTCTGACGTGTTAATAATG</gDNA_template>
            <first_frame> T  R  L  L  I  Y  F  N  Y  N  F  S  S  D  I  R  *  K  E  K  E  R  T  D  S  N  I  *  I  S  T  L  Y  E  R  D  F  F  L  S  E  V  V  V  V  N  R  I  T  F  L  T  Q  S  E  S  R  S  R  K  R  D  N  E  A  T  T  T  G  I  R  H  E  N  S  S  S  F  H  L  L  Q  R  W  L  W  N  F  I  F  C  Y  S  S  *  A  F  F  Y  S  S  L  P  H  R  S  Q  N :   G  A  I  R  E  I  C  *  N  H  E  E  I  L  G  A  V  C  S  Q  V  R  N  I  F  L  H  G  Q  R  C  Y  F  C  G  H  Q   : G  F  G  R  A  Q  G  Y  I  G  C  S  T  L  P  L  Q  :  A  L  *  *  Q  S  C  R  S  A  A  G  L  L  E  L  S  V  C  T  N  E  R  E  :  E  G  V  S  L  H  A  F  S  D  P  *  *  *  F  C  W  R  R  T   : D  D  Y  Y  G  G  D  *  G  N  N  S  Q  H  V  M  L  G  H  L  I  H  A  M  N  I  T  F  L  L  Y  M  Y  I  *  V  L  D  E  E  Q  Q  S  S  S  D  V  T  C  C  *  N  P  I  H  Y  I  V  V  I  L  I  S  S  S  E  I  G  W  V  N  N  S  A  I  M  L  T  V  V  *  C  I  *  I  V  *  V  I  T  H  I  R  G  F  W  V  A  S  A  S  A  N  A  N  P  D  F  V  *  N  W  N  Q  F  P  K  A  A  L  *  S  S  I  P  V  V  *  R  V  N  N  </first_frame>
            <second_frame>  P  V  Y  *  F  I  L  I  I  I  F  L  Q  I  L  G  E  K  K  R  R  E  R  I  V  I  Y  K  Y  Q  R  C  T  K  E  I  F  S  F  P  K  L  W  W  L  T  E  S  H  F  *  L  N  R  K  V  G  A  E  N  E  T  T  K  Q  Q  L  P  E  S  A  M  R  T  L  Q  A  S  T  S  Y  S  V  G  F  G  I  S  S  F  A  T  R  P  K  P  S  S  T  H  R  C  L  T  V  A  K   : M  E  P  S  E  K  S  V  E  I  M  R  K  F  S  E  Q  Y  A  R  R  S  E  T  Y  F  C  M  D  K  G  V  T  S  V  V  I  K  :  G  L  A  E  H  K  D  T  L  G  A  P  L  C  P  C  R :   H  Y  D  D  K  A  A  E  A  Q  Q  G  F  W  N  C  P  C  V  P  M  R  E  R :   K  E  C  H  C  M  L  F  L  T  P  D  N  D  F  A  G  E  E  Q  :  T  I  T  M  E  E  I  K  E  T  T  A  N  M  *  C  S  D  I  L  Y  M  L  *  T  L  R  F  C  C  T  C  I  F  E  Y  *  M  K  S  N  N  P  V  L  M  *  H  V  A  E  T  P  S  I  T  L  L  *  F  *  S  R  L  V  R  L  G  G  *  I  T  V  Q  L  C  *  L  L  C  D  A  S  R  L  Y  E  S  *  L  I  L  G  D  F  G  W  L  Q  L  Q  L  M  Q  I  L  I  L  Y  K  T  G  I  N  F  Q  K  L  L  C  E  V  Q  S  Q  S  S  D  V  L  I  M </second_frame>
            <third_frame>   P  F  I  N  L  F  *  L  *  F  F  F  R  Y  *  V  K  R  K  G  E  N  G  *  *  Y  I  N  I  N  A  V  R  K  R  F  F  P  F  R  S  C  G  G  *  Q  N  H  I  F  D  S  I  G  K  S  E  Q  K  T  R  Q  R  S  N  N  Y  R  N  P  P  *  E  L  F  K  L  P  P  P  T  A  L  A  L  E  F  H  L  L  L  L  V  L  S  L  L  L  L  I  A  A  S  P  *  P  K  :  W  S  H  Q  R  N  L  L  K  S  *  G  N  S  R  S  S  M  L  A  G  Q  K  H  I  S  A  W  T  K  V  L  L  L  W  S  S  R :   V  W  Q  S  T  R  I  H  W  V  L  H  S  A  P  A   : G  I  M  M  T  K  L  Q  K  R  S  R  A  S  G  I  V  R  V  Y  Q  *  E  R   : G  R  S  V  T  A  C  F  F  *  P  L  I  M  I  L  L  E  K  N  R :   R  L  L  W  R  R  L  R  K  Q  Q  P  T  C  D  A  R  T  S  Y  T  C  Y  E  H  Y  V  F  V  V  H  V  Y  L  S  I  R  *  R  A  T  I  Q  F  *  C  D  M  L  L  K  P  H  P  L  H  C  C  D  S  D  L  V  *  *  D  W  V  G  E  *  Q  C  N  Y  A  N  C  C  V  M  H  L  D  C  M  S  H  N  S  Y  *  G  I  L  G  G  F  S  F  S  *  C  K  S  *  F  C  I  K  L  E  S  I  S  K  S  C  F  V  K  F  N  P  S  R  L  T  C  *  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55224" stop="55056"/>
                    <exon start="54485" stop="54373"/>
                    <exon start="51513" stop="51464"/>
                    <exon start="51333" stop="51262"/>
                    <exon start="50612" stop="50552"/>
                    <exon start="50341" stop="50297"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>507</number_coding_nucleotides>
                  <number_encoded_amino_acids>169</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNRKVGAENETTKQQLPESAMRTLQASTSYSVGFGISSFATRPKPSSTHRCLTVAKMEPSEKSVEIMRKFSEQYARRSETYFCMDKGVTSVVIKGLAEHKDTLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERKECHCMLFLTPDNDFAGEEQTITMEEIKETTANM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="53918" e_stop="53175"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="53918" e_stop="53175" e_length="744"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53918" stop="53175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U570840" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTT</gDNA_template>
            <first_frame> L  Y  K  C  F  E  R  *  D  T  P  S  *  A  I  K  *  E  F  I  V  S  A  W  K  L  Y  C  R  F  T  N  S  K  I  M  A  F  C  I  L  E  V  *  D  K  L  Q  V  C  D  V  I  S  V  P  K  S  C  F  Y  T  I  A  A  *  L  L  L  N  S  I  L  L  L  R  S  S  T  L  V  L  L  P  H  K  K  K  S  D  T  F  G  L  E  L  E  *  P  I  T  F  S  Q  V  S  F  T  L  Y  F  R  F  R  C  V  F  V  Y  L  L  E  A  Y  F  Y  V  S  S  *  K  Y  E  F  K  I  V  E  L  W  K  L  L  N  *  G  D  I  N  Y  Q  R  L  I  M  R  D  K  Q  *  H  K  A  N  Y  I  I  K  D  S  Y  T  R  N  F  *  H  K  E  G  N  K  N  *  E  T  F  N  N  V  S  T  R  F  T  I  S  *  T  R  *  K  N  R  F  Y  H  L  I  N  K  I  E  E  *  I  Y  L  K  F  Q  R  M  *  L  *  R  S  *  *  I  A  K  Y  K  P  I  T  K  I  N  P  T  C  C  P  S  F </first_frame>
            <second_frame>  Y  T  N  V  L  N  V  R  I  L  P  P  R  L  *  S  E  N  L  S  Y  L  L  G  N  C  I  V  V  L  L  T  P  R  *  W  H  S  V  Y  L  K  F  R  T  S  C  K  C  V  M  S  F  Q  F  Q  K  V  A  S  I  L  *  L  L  D  Y  C  *  I  V  F  C  C  S  E  V  L  L  W  S  Y  Y  L  I  K  K  K  V  I  P  L  V  *  S  L  N  S  Q  S  L  F  P  R  Y  P  S  L  Y  I  S  G  L  G  V  C  S  C  I  F  *  K  H  I  S  M  *  V  R  E  S  M  N  L  K  L  W  S  C  G  N  S  *  T  E  G  I  S  I  I  K  D  L  *  *  E  I  N  N  S  T  K  L  I  I  *  *  R  T  V  I  Q  G  I  F  N  T  K  K  G  I  R  I  E  K  L  L  I  M  *  V  Q  D  L  P  S  H  K  Q  D  R  R  I  D  F  I  I  S  *  T  R  *  K  N  R  F  I  S  S  F  R  E  C  D  C  D  G  V  N  R  L  L  N  T  S  Q  S  Q  R  S  I  Q  H  A  V  L  L   </second_frame>
            <third_frame>   I  Q  M  F  *  T  L  G  Y  S  L  L  G  Y  K  V  R  I  Y  R  I  C  L  E  T  V  L  S  F  Y  *  L  Q  D  N  G  I  L  Y  T  *  S  L  G  Q  A  A  S  V  *  C  H  F  S  S  K  K  L  L  L  Y  Y  S  C  L  I  I  V  E  *  Y  F  V  A  Q  K  F  Y  F  G  L  I  T  S  *  K  K  K  *  Y  L  W  F  R  A  *  I  A  N  H  F  F  P  G  I  L  H  F  I  F  Q  V  *  V  C  V  R  V  S  S  R  S  I  F  L  C  K  F  V  K  V  *  I  *  N  C  G  A  V  E  T  L  E  L  R  G  Y  Q  L  S  K  T  Y  N  E  R  *  T  I  A  Q  S  *  L  Y  N  K  G  Q  L  Y  K  E  F  L  T  Q  R  R  E  *  E  L  R  N  F  *  *  C  E  Y  K  I  Y  H  L  I  N  K  I  E  E  *  I  L  S  S  H  K  Q  D  R  R  I  D  L  S  Q  V  S  E  N  V  T  V  T  E  L  I  D  C  *  I  Q  A  N  H  K  D  Q  S  N  M  L  S  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0189G15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="59016" PGL_stop="62919"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59016" e_stop="59124"/>
            <exon e_start="60212" e_stop="61684"/>
            <exon e_start="62634" e_stop="62919"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.424" e_score="0.999"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="59016" e_stop="59124" e_length="109"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.983">
            <gDNA_intron_boundary i_start="59125" i_stop="60211" i_length="1087"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="60212" e_stop="61684" e_length="1473"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.424">
            <gDNA_intron_boundary i_start="61685" i_stop="62633" i_length="949"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="62634" e_stop="62919" e_length="286"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59016" stop="59124"/>
              <exon start="60212" stop="61684"/>
              <exon start="62634" stop="62919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U581023" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTATTTTTTTCTTATTTTTATGAGAAAGAGAGCTTCAATCTCACCCTAATCTGCTGGAGAATCAGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATG : GCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGTGGTGAAGAGACAGCTCTTCTGGAGAGCCTTGAGGGCAAACAAGGCAAACCAAGATTGAAGCCTCCATTTCCAGCTAATGCAGGACTATATGGATGTCCAACAACTGTTACAAATGTTGAAACAGTAGCTGTTTCACCAACCATCTTAAGGCGTGGTCCAGAGTGGTTTGCTAGTTTTGGCCGGAAGAATAATGCCGGGACAAAGCTGTTTTGCATCTCAGGCCATGTTAACAAGCCCTGTACAGTTGAAGAGGAAATGAGTATTTCATTGAAGGAGCTGCTAGAGAGGCACTGTGGTGGTGTGCGTGGAGGATGGGACAATTTGCTTGCTGTTATACCAGGAGGTTCATCTGTTCCACTGCTTCCCAAGAACATATGTGAGGATGTACTTATGGATTTTGATGCACTCAAAGCTGTGCAGTCAGGGTTGGGAACTGCTGCTGTAATTGTCATGGACAAGTCAACTGATGTTGTAGATGCAATTGCAAGGCTCTCGTACTTCTACAAGCACGAGAGTTGTGGTCAATGTACACCATGTAGGGAAGGCACAGGATGGCTTTGGATGATCATGGAAAGAATGAAGGTTGGCAATGCAAAGTTGGAAGAGATTGACATGCTCCAAGAGGTGACAAAACAGATTGAAGGGCACACTATTTGTGCCTTGGGTGACGCTGCTGCTTGGCCAGTACAGGGTCTTATTAGGCACTTTAGACCAGAGCTAGAAAGGAGGATCAGGGAGCATGCAGAGAGGGAGCTACAACAGGCAGCTGCTGCTTGATTCTTTTATGAG : TTTGCTGTTTGATACCATGGGAATAAATTTTGAGAAGTACCAGAAGTATGAATGTGGGAGGGGAAAGCAGGACGCAGAGCTTCCCTATATCCAGCCACTTTTTATTATCAAACTTGTGTAGAACTATTGTTACATTGTTGGCCCAATGGGTAATTTATGTTTCAGAGCTGGTACATCTAATGTCTTAATGTTTCCTTACATTATCATTGCCATGGTTTTGGTAGTTGAAAGATGCTTTAATATTTGTCATGTTGCGTTAAATAAGATCTACACTTTGGCAATTCCA</gDNA_template>
            <first_frame> L  I  F  F  L  F  L  *  E  R  E  L  Q  S  H  P  N  L  L  E  N  Q  L  N  F  V  D  *  S  H  F  C  F  N  I  H   : G  T  Y  K  G  P  S  F  S  T  T  N  C  I  S  S  A  F  *  *  K  M  G  P  I  W  *  V  I  *  H  S  G  C  I  N  C  *  H  S  P  T  Y  T  P  T  P  T  S  R  E  D  S  L  W  W  P  *  R  *  G  S  Y  F  H  K  S  L  R  I  A  *  P  L  P  Q  R  C  H  E  A  R  R  L  V  Q  N  K  R  S  C  H  Q  G  F  *  L  D  R  E  *  N  E  E  I  W  S  S  R  T  W  W  C  W  F  S  I  W  S  Q  M  V  L  H  A  K  D  N  R  W  P  S  F  I  S  C  R  Q  C  *  *  K  *  T  W  N  L  *  R  Q  G  N  H  A  A  *  P  T  Q  V  V  G  R  L  S  D  C  R  S  G  D  E  S  *  S  C  L  Y  L  Y  Q  G  R  V  C  E  *  K  V  E  P  S  E  G  *  T  R  S  L  *  S  W  I  V  G  E  K  C  L  W  I  W  L  *  F  *  R  I  Y  S  F  W  C  W  C  L  Y  L  W  *  R  D  S  S  S  G  E  P  *  G  Q  T  R  Q  T  K  I  E  A  S  I  S  S  *  C  R  T  I  W  M  S  N  N  C  Y  K  C  *  N  S  S  C  F  T  N  H  L  K  A  W  S  R  V  V  C  *  F  W  P  E  E  *  C  R  D  K  A  V  L  H  L  R  P  C  *  Q  A  L  Y  S  *  R  G  N  E  Y  F  I  E  G  A  A  R  E  A  L  W  W  C  A  W  R  M  G  Q  F  A  C  C  Y  T  R  R  F  I  C  S  T  A  S  Q  E  H  M  *  G  C  T  Y  G  F  *  C  T  Q  S  C  A  V  R  V  G  N  C  C  C  N  C  H  G  Q  V  N  *  C  C  R  C  N  C  K  A  L  V  L  L  Q  A  R  E  L  W  S  M  Y  T  M  *  G  R  H  R  M  A  L  D  D  H  G  K  N  E  G  W  Q  C  K  V  G  R  D  *  H  A  P  R  G  D  K  T  D  *  R  A  H  Y  L  C  L  G  *  R  C  C  L  A  S  T  G  S  Y  *  A  L  *  T  R  A  R  K  E  D  Q  G  A  C  R  E  G  A  T  T  G  S  C  C  L  I  L  L  *   : V  C  C  L  I  P  W  E  *  I  L  R  S  T  R  S  M  N  V  G  G  E  S  R  T  Q  S  F  P  I  S  S  H  F  L  L  S  N  L  C  R  T  I  V  T  L  L  A  Q  W  V  I  Y  V  S  E  L  V  H  L  M  S  *  C  F  L  T  L  S  L  P  W  F  W  *  L  K  D  A  L  I  F  V  M  L  R  *  I  R  S  T  L  W  Q  F   </first_frame>
            <second_frame>  L  F  F  S  Y  F  Y  E  K  E  S  F  N  L  T  L  I  C  W  R  I  S  *  I  S  S  I  N  H  I  S  A  S  I  F  M  :  A  P  I  K  G  L  L  S  L  Q  R  T  A  L  A  Q  R  S  S  E  R  W  G  Q  Y  G  R  L  F  S  T  Q  A  A  S  T  A  S  T  P  Q  P  T  P  P  P  P  P  P  E  R  T  H  F  G  G  L  K  D  E  D  R  I  F  T  N  L  Y  G  L  H  D  P  Y  L  K  G  A  M  K  R  G  D  W  Y  R  T  K  D  L  V  I  K  G  S  D  W  I  V  N  E  M  K  K  S  G  L  R  G  R  G  G  A  G  F  P  S  G  L  K  W  S  F  M  P  K  T  T  D  G  R  P  S  Y  L  V  V  N  A  D  E  S  E  P  G  T  C  K  D  R  E  I  M  R  H  D  P  H  K  L  L  E  G  C  L  I  A  G  V  G  M  R  A  R  A  A  Y  I  Y  I  R  G  E  Y  V  N  E  R  L  S  L  Q  K  A  R  Q  E  A  Y  E  A  G  L  L  G  K  N  A  C  G  S  G  Y  D  F  D  V  Y  I  H  F  G  A  G  A  Y  I  C  G  E  E  T  A  L  L  E  S  L  E  G  K  Q  G  K  P  R  L  K  P  P  F  P  A  N  A  G  L  Y  G  C  P  T  T  V  T  N  V  E  T  V  A  V  S  P  T  I  L  R  R  G  P  E  W  F  A  S  F  G  R  K  N  N  A  G  T  K  L  F  C  I  S  G  H  V  N  K  P  C  T  V  E  E  E  M  S  I  S  L  K  E  L  L  E  R  H  C  G  G  V  R  G  G  W  D  N  L  L  A  V  I  P  G  G  S  S  V  P  L  L  P  K  N  I  C  E  D  V  L  M  D  F  D  A  L  K  A  V  Q  S  G  L  G  T  A  A  V  I  V  M  D  K  S  T  D  V  V  D  A  I  A  R  L  S  Y  F  Y  K  H  E  S  C  G  Q  C  T  P  C  R  E  G  T  G  W  L  W  M  I  M  E  R  M  K  V  G  N  A  K  L  E  E  I  D  M  L  Q  E  V  T  K  Q  I  E  G  H  T  I  C  A  L  G  D  A  A  A  W  P  V  Q  G  L  I  R  H  F  R  P  E  L  E  R  R  I  R  E  H  A  E  R  E  L  Q  Q  A  A  A  A  *  F  F  Y  E  :  F  A  V  *  Y  H  G  N  K  F  *  E  V  P  E  V  *  M  W  E  G  K  A  G  R  R  A  S  L  Y  P  A  T  F  Y  Y  Q  T  C  V  E  L  L  L  H  C  W  P  N  G  *  F  M  F  Q  S  W  Y  I  *  C  L  N  V  S  L  H  Y  H  C  H  G  F  G  S  *  K  M  L  *  Y  L  S  C  C  V  K  *  D  L  H  F  G  N  S  </second_frame>
            <third_frame>   Y  F  F  L  I  F  M  R  K  R  A  S  I  S  P  *  S  A  G  E  S  A  E  F  R  R  L  I  T  F  L  L  Q  Y  S  W :   H  L  *  R  A  F  F  L  Y  N  E  L  H  *  L  S  V  L  V  K  D  G  A  N  M  V  G  Y  L  A  L  R  L  H  Q  L  L  A  L  P  N  L  H  P  H  P  H  L  P  R  G  L  T  L  V  A  L  K  M  R  I  V  F  S  Q  I  S  T  D  C  M  T  L  T  S  K  V  P  *  S  E  E  I  G  T  E  Q  K  I  L  S  S  R  V  L  T  G  S  *  M  K  *  R  N  L  V  F  E  D  V  V  V  L  V  F  H  L  V  S  N  G  P  S  C  Q  R  Q  Q  M  A  V  L  H  I  L  S  S  M  L  M  K  V  N  L  E  P  V  K  T  G  K  S  C  G  M  T  H  T  S  C  W  K  A  V  *  L  Q  E  W  G  *  E  L  E  L  L  I  F  I  S  G  E  S  M  *  M  K  G  *  A  F  R  R  L  D  K  K  P  M  K  L  D  C  W  G  K  M  L  V  D  L  V  M  I  L  T  Y  I  F  I  L  V  L  V  P  I  F  V  V  K  R  Q  L  F  W  R  A  L  R  A  N  K  A  N  Q  D  *  S  L  H  F  Q  L  M  Q  D  Y  M  D  V  Q  Q  L  L  Q  M  L  K  Q  *  L  F  H  Q  P  S  *  G  V  V  Q  S  G  L  L  V  L  A  G  R  I  M  P  G  Q  S  C  F  A  S  Q  A  M  L  T  S  P  V  Q  L  K  R  K  *  V  F  H  *  R  S  C  *  R  G  T  V  V  V  C  V  E  D  G  T  I  C  L  L  L  Y  Q  E  V  H  L  F  H  C  F  P  R  T  Y  V  R  M  Y  L  W  I  L  M  H  S  K  L  C  S  Q  G  W  E  L  L  L  *  L  S  W  T  S  Q  L  M  L  *  M  Q  L  Q  G  S  R  T  S  T  S  T  R  V  V  V  N  V  H  H  V  G  K  A  Q  D  G  F  G  *  S  W  K  E  *  R  L  A  M  Q  S  W  K  R  L  T  C  S  K  R  *  Q  N  R  L  K  G  T  L  F  V  P  W  V  T  L  L  L  G  Q  Y  R  V  L  L  G  T  L  D  Q  S  *  K  G  G  S  G  S  M  Q  R  G  S  Y  N  R  Q  L  L  L  D  S  F  M  S :   L  L  F  D  T  M  G  I  N  F  E  K  Y  Q  K  Y  E  C  G  R  G  K  Q  D  A  E  L  P  Y  I  Q  P  L  F  I  I  K  L  V  *  N  Y  C  Y  I  V  G  P  M  G  N  L  C  F  R  A  G  T  S  N  V  L  M  F  P  Y  I  I  I  A  M  V  L  V  V  E  R  C  F  N  I  C  H  V  A  L  N  K  I  Y  T  L  A  I  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59086" stop="59124"/>
                    <exon start="60212" stop="61672"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1497</number_coding_nucleotides>
                  <number_encoded_amino_acids>499</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISSINHISASIFMAPIKGLLSLQRTALAQRSSERWGQYGRLFSTQAASTASTPQPTPPPPPPERTHFGGLKDEDRIFTNLYGLHDPYLKGAMKRGDWYRTKDLVIKGSDWIVNEMKKSGLRGRGGAGFPSGLKWSFMPKTTDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRARAAYIYIRGEYVNERLSLQKARQEAYEAGLLGKNACGSGYDFDVYIHFGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNAGTKLFCISGHVNKPCTVEEEMSISLKELLERHCGGVRGGWDNLLAVIPGGSSVPLLPKNICEDVLMDFDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERMKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIREHAERELQQAAAA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="68395" PGL_stop="63873"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68395" e_stop="68162"/>
            <exon e_start="66924" e_stop="66865"/>
            <exon e_start="66762" e_stop="66637"/>
            <exon e_start="65902" e_stop="65633"/>
            <exon e_start="65535" e_stop="65304"/>
            <exon e_start="64887" e_stop="64757"/>
            <exon e_start="64669" e_stop="63873"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.071" e_score="0.993"/>
          <exon-intron don_prob="0.987" acc_prob="0.910" e_score="1.000"/>
          <exon-intron don_prob="0.722" acc_prob="0.578" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="68395" e_stop="68162" e_length="234"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.955">
            <gDNA_intron_boundary i_start="68161" i_stop="66925" i_length="1237"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="66924" e_stop="66865" e_length="60"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.973">
            <gDNA_intron_boundary i_start="66864" i_stop="66763" i_length="102"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="66762" e_stop="66637" e_length="126"/>
          </exon>
          <intron i_serial="3" don_prob="0.973" acc_prob="0.983">
            <gDNA_intron_boundary i_start="66636" i_stop="65903" i_length="734"/>
          </intron>
          <exon e_serial="4" e_score="0.993">
            <gDNA_exon_boundary e_start="65902" e_stop="65633" e_length="270"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.071">
            <gDNA_intron_boundary i_start="65632" i_stop="65536" i_length="97"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="65535" e_stop="65304" e_length="232"/>
          </exon>
          <intron i_serial="5" don_prob="0.987" acc_prob="0.910">
            <gDNA_intron_boundary i_start="65303" i_stop="64888" i_length="416"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="64887" e_stop="64757" e_length="131"/>
          </exon>
          <intron i_serial="6" don_prob="0.722" acc_prob="0.578">
            <gDNA_intron_boundary i_start="64756" i_stop="64670" i_length="87"/>
          </intron>
          <exon e_serial="7" e_score="0.997">
            <gDNA_exon_boundary e_start="64669" e_stop="63873" e_length="797"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68395" stop="68162"/>
              <exon start="66924" stop="66865"/>
              <exon start="66762" stop="66637"/>
              <exon start="65902" stop="65633"/>
              <exon start="65535" stop="65304"/>
              <exon start="64887" stop="64757"/>
              <exon start="64669" stop="63873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U564117" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATTGGTGAAGGTAATAACGGGGAGGAAAAACATTGAAGAGGTCCACCAAATAGCTAGGATGTTAGAGGCAGAGAGTGGGGGAATACTAGTTGCTGTTGAGCGAGTTAATAAGGGTTATGCGATCATTGTATACCGAGGAAAGAACTACGAAAGGCCTGCTTCATTGAGGCCTCAGACTCTTCTAAGTAAAAGAGAAGCAATGAAGCGCTCTATAGAGGCTCAGCGACGTCAG : TCATTGAAATTACATGTCTTAAAGCTTACACAAAATATAGAGGCTTTGCAGTCACGGTTG : GCCAAGAATGAGGAGATAAGTCATATTCAGTCCCCGGATATAGTTGATAGGCAGGTACCCGTGATGGGCATATCAGATGCTGCAGGTGGAACTAATTACCAGTCTATTGTAGCAAGTCCTATTGAG : GATTCTGGAGATGCTGCAGAAGACACTGACCCCAGTTCTCAGAAAGAATTATCAAATGATTTCTCGGACACAGACCACGATTCGCAGCAAGAATTTCCAATTAATCCGTTTTTCCAATATGAGGGCAAGGTTGAGGCTATGGGTGATACAATTCAACCTCAGCATCAATCTATTTCATCAATCAAAGAGTCGAAAAGTATGTTCAATGTGAATGTGGATCAAGAAACATTCGGCAGTGCAGTGAGTGAATCTGTTTCTAAGTCTTCCAGG : GGAGAAGTTAAGATCCACTTTTCTGAGACCAGAAGTTTCAACAAACCTCGGGAAGTTAACAATAAAATGGAGGTGTCTCAACCTCCTCCTGTAAAACCTCAACAAACACTTAGATCCACCCGGAGTAGGTCCGAAGGGATGTCTACCAGAAGAGTACAGCTTTCCAACAGGGAGAGGCTGCTTCTCAGAAAACAAGCCCTCAAGATGAAGAAGCAACCAGTGCTTGCTGTTG : GGAGGAGCAATATTGTTACTGGAGTTGCAAAAAATATCAAAGAACACTTTAAGAAGTATCCTCTTGCGATTGTGAATGTCAAAGGAAGGGCAAAAGGGACTTCAGTTAGGGAGGTGGTTTTTAAGCTGGAG : CAAGCTACAGGTGCTGTTCTTGTTTCTCAAGAGCCAAGCAAAGTCATATTGTATAGAGGTTGGGGACCAGGTGGAGAGCGTGGTGCTTCTAATGGAAATGACACCAGTAATTCGAAAAACAGCAGAGAGCAAAAGGAACTAATGTCAATATCTCCTGAACTTATATCAGCAATCAGACTTGAATGTGGCTTGCAGTCCAACAATGATATGGAAGTTGCTTCATAGGCAACAACCTTGGTAAAAGGGAAGTTACCAGTTGGTTTTTTTAGGTTCAAAGCCTTGAGCTCTCATCTAACAACGCTTTTGTGCACCCGATGATGGTCTCTGAATTGTCTGTGCATGCATCTAACAATTGCTTTCTTGGTGTGGAGTTGGAATCTAAATTGTGCATCACCTCTCCCATACAAATGAAAGGGAATCGGCTTCCACCAAACTTCTCTCCTTGCAGAATTTCAGTAGCTGGAATAAGTTCCACATGATAATTCCTGTCTCATGGTCATTGTGCATCAACTGGAGAGATTCTGTATGTCAGTTAAGTGGCGCTGCTAATTTACATTTTATGTAAATAGAAGTTTCAATTCAAAAATACGCATCTATTACCATGTCATCTTTTTAATTTTCCCTAGAAACAAAAAAGACTGATGCACATTGCACATGTTCCTTTAGATTACATACTGGTTTTAGATTAGTTATGTTCATGACAAAACAAGTATGTAAACATATAAATTCACCAAAAATCTAATATATGACATTGTCTTTATGACATTCTTTTTAATCAACACTAGGGGCCCGTTTGG</gDNA_template>
            <first_frame> E  L  V  K  V  I  T  G  R  K  N  I  E  E  V  H  Q  I  A  R  M  L  E  A  E  S  G  G  I  L  V  A  V  E  R  V  N  K  G  Y  A  I  I  V  Y  R  G  K  N  Y  E  R  P  A  S  L  R  P  Q  T  L  L  S  K  R  E  A  M  K  R  S  I  E  A  Q  R  R  Q  :  S  L  K  L  H  V  L  K  L  T  Q  N  I  E  A  L  Q  S  R  L  :  A  K  N  E  E  I  S  H  I  Q  S  P  D  I  V  D  R  Q  V  P  V  M  G  I  S  D  A  A  G  G  T  N  Y  Q  S  I  V  A  S  P  I  E  :  D  S  G  D  A  A  E  D  T  D  P  S  S  Q  K  E  L  S  N  D  F  S  D  T  D  H  D  S  Q  Q  E  F  P  I  N  P  F  F  Q  Y  E  G  K  V  E  A  M  G  D  T  I  Q  P  Q  H  Q  S  I  S  S  I  K  E  S  K  S  M  F  N  V  N  V  D  Q  E  T  F  G  S  A  V  S  E  S  V  S  K  S  S  R  :  G  E  V  K  I  H  F  S  E  T  R  S  F  N  K  P  R  E  V  N  N  K  M  E  V  S  Q  P  P  P  V  K  P  Q  Q  T  L  R  S  T  R  S  R  S  E  G  M  S  T  R  R  V  Q  L  S  N  R  E  R  L  L  L  R  K  Q  A  L  K  M  K  K  Q  P  V  L  A  V   : G  R  S  N  I  V  T  G  V  A  K  N  I  K  E  H  F  K  K  Y  P  L  A  I  V  N  V  K  G  R  A  K  G  T  S  V  R  E  V  V  F  K  L  E  :  Q  A  T  G  A  V  L  V  S  Q  E  P  S  K  V  I  L  Y  R  G  W  G  P  G  G  E  R  G  A  S  N  G  N  D  T  S  N  S  K  N  S  R  E  Q  K  E  L  M  S  I  S  P  E  L  I  S  A  I  R  L  E  C  G  L  Q  S  N  N  D  M  E  V  A  S  *  A  T  T  L  V  K  G  K  L  P  V  G  F  F  R  F  K  A  L  S  S  H  L  T  T  L  L  C  T  R  *  W  S  L  N  C  L  C  M  H  L  T  I  A  F  L  V  W  S  W  N  L  N  C  A  S  P  L  P  Y  K  *  K  G  I  G  F  H  Q  T  S  L  L  A  E  F  Q  *  L  E  *  V  P  H  D  N  S  C  L  M  V  I  V  H  Q  L  E  R  F  C  M  S  V  K  W  R  C  *  F  T  F  Y  V  N  R  S  F  N  S  K  I  R  I  Y  Y  H  V  I  F  L  I  F  P  R  N  K  K  D  *  C  T  L  H  M  F  L  *  I  T  Y  W  F  *  I  S  Y  V  H  D  K  T  S  M  *  T  Y  K  F  T  K  N  L  I  Y  D  I  V  F  M  T  F  F  L  I  N  T  R  G  P  F   </first_frame>
            <second_frame>  N  W  *  R  *  *  R  G  G  K  T  L  K  R  S  T  K  *  L  G  C  *  R  Q  R  V  G  E  Y  *  L  L  L  S  E  L  I  R  V  M  R  S  L  Y  T  E  E  R  T  T  K  G  L  L  H  *  G  L  R  L  F  *  V  K  E  K  Q  *  S  A  L  *  R  L  S  D  V  S :   H  *  N  Y  M  S  *  S  L  H  K  I  *  R  L  C  S  H  G  W :   P  R  M  R  R  *  V  I  F  S  P  R  I  *  L  I  G  R  Y  P  *  W  A  Y  Q  M  L  Q  V  E  L  I  T  S  L  L  *  Q  V  L  L  R :   I  L  E  M  L  Q  K  T  L  T  P  V  L  R  K  N  Y  Q  M  I  S  R  T  Q  T  T  I  R  S  K  N  F  Q  L  I  R  F  S  N  M  R  A  R  L  R  L  W  V  I  Q  F  N  L  S  I  N  L  F  H  Q  S  K  S  R  K  V  C  S  M  *  M  W  I  K  K  H  S  A  V  Q  *  V  N  L  F  L  S  L  P  G :   E  K  L  R  S  T  F  L  R  P  E  V  S  T  N  L  G  K  L  T  I  K  W  R  C  L  N  L  L  L  *  N  L  N  K  H  L  D  P  P  G  V  G  P  K  G  C  L  P  E  E  Y  S  F  P  T  G  R  G  C  F  S  E  N  K  P  S  R  *  R  S  N  Q  C  L  L  L  :  G  G  A  I  L  L  L  E  L  Q  K  I  S  K  N  T  L  R  S  I  L  L  R  L  *  M  S  K  E  G  Q  K  G  L  Q  L  G  R  W  F  L  S  W  S :   K  L  Q  V  L  F  L  F  L  K  S  Q  A  K  S  Y  C  I  E  V  G  D  Q  V  E  S  V  V  L  L  M  E  M  T  P  V  I  R  K  T  A  E  S  K  R  N  *  C  Q  Y  L  L  N  L  Y  Q  Q  S  D  L  N  V  A  C  S  P  T  M  I  W  K  L  L  H  R  Q  Q  P  W  *  K  G  S  Y  Q  L  V  F  L  G  S  K  P  *  A  L  I  *  Q  R  F  C  A  P  D  D  G  L  *  I  V  C  A  C  I  *  Q  L  L  S  W  C  G  V  G  I  *  I  V  H  H  L  S  H  T  N  E  R  E  S  A  S  T  K  L  L  S  L  Q  N  F  S  S  W  N  K  F  H  M  I  I  P  V  S  W  S  L  C  I  N  W  R  D  S  V  C  Q  L  S  G  A  A  N  L  H  F  M  *  I  E  V  S  I  Q  K  Y  A  S  I  T  M  S  S  F  *  F  S  L  E  T  K  K  T  D  A  H  C  T  C  S  F  R  L  H  T  G  F  R  L  V  M  F  M  T  K  Q  V  C  K  H  I  N  S  P  K  I  *  Y  M  T  L  S  L  *  H  S  F  *  S  T  L  G  A  R  L  </second_frame>
            <third_frame>   I  G  E  G  N  N  G  E  E  K  H  *  R  G  P  P  N  S  *  D  V  R  G  R  E  W  G  N  T  S  C  C  *  A  S  *  *  G  L  C  D  H  C  I  P  R  K  E  L  R  K  A  C  F  I  E  A  S  D  S  S  K  *  K  R  S  N  E  A  L  Y  R  G  S  A  T  S   : V  I  E  I  T  C  L  K  A  Y  T  K  Y  R  G  F  A  V  T  V   : G  Q  E  *  G  D  K  S  Y  S  V  P  G  Y  S  *  *  A  G  T  R  D  G  H  I  R  C  C  R  W  N  *  L  P  V  Y  C  S  K  S  Y  *   : G  F  W  R  C  C  R  R  H  *  P  Q  F  S  E  R  I  I  K  *  F  L  G  H  R  P  R  F  A  A  R  I  S  N  *  S  V  F  P  I  *  G  Q  G  *  G  Y  G  *  Y  N  S  T  S  A  S  I  Y  F  I  N  Q  R  V  E  K  Y  V  Q  C  E  C  G  S  R  N  I  R  Q  C  S  E  *  I  C  F  *  V  F  Q   : G  R  S  *  D  P  L  F  *  D  Q  K  F  Q  Q  T  S  G  S  *  Q  *  N  G  G  V  S  T  S  S  C  K  T  S  T  N  T  *  I  H  P  E  *  V  R  R  D  V  Y  Q  K  S  T  A  F  Q  Q  G  E  A  A  S  Q  K  T  S  P  Q  D  E  E  A  T  S  A  C  C  W :   E  E  Q  Y  C  Y  W  S  C  K  K  Y  Q  R  T  L  *  E  V  S  S  C  D  C  E  C  Q  R  K  G  K  R  D  F  S  *  G  G  G  F  *  A  G   : A  S  Y  R  C  C  S  C  F  S  R  A  K  Q  S  H  I  V  *  R  L  G  T  R  W  R  A  W  C  F  *  W  K  *  H  Q  *  F  E  K  Q  Q  R  A  K  G  T  N  V  N  I  S  *  T  Y  I  S  N  Q  T  *  M  W  L  A  V  Q  Q  *  Y  G  S  C  F  I  G  N  N  L  G  K  R  E  V  T  S  W  F  F  *  V  Q  S  L  E  L  S  S  N  N  A  F  V  H  P  M  M  V  S  E  L  S  V  H  A  S  N  N  C  F  L  G  V  E  L  E  S  K  L  C  I  T  S  P  I  Q  M  K  G  N  R  L  P  P  N  F  S  P  C  R  I  S  V  A  G  I  S  S  T  *  *  F  L  S  H  G  H  C  A  S  T  G  E  I  L  Y  V  S  *  V  A  L  L  I  Y  I  L  C  K  *  K  F  Q  F  K  N  T  H  L  L  P  C  H  L  F  N  F  P  *  K  Q  K  R  L  M  H  I  A  H  V  P  L  D  Y  I  L  V  L  D  *  L  C  S  *  Q  N  K  Y  V  N  I  *  I  H  Q  K  S  N  I  *  H  C  L  Y  D  I  L  F  N  Q  H  *  G  P  V  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68395" stop="68162"/>
                    <exon start="66924" stop="66865"/>
                    <exon start="66762" stop="66637"/>
                    <exon start="65902" stop="65633"/>
                    <exon start="65535" stop="65304"/>
                    <exon start="64887" stop="64757"/>
                    <exon start="64669" stop="64445"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1275</number_coding_nucleotides>
                  <number_encoded_amino_acids>425</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ELVKVITGRKNIEEVHQIARMLEAESGGILVAVERVNKGYAIIVYRGKNYERPASLRPQTLLSKREAMKRSIEAQRRQSLKLHVLKLTQNIEALQSRLAKNEEISHIQSPDIVDRQVPVMGISDAAGGTNYQSIVASPIEDSGDAAEDTDPSSQKELSNDFSDTDHDSQQEFPINPFFQYEGKVEAMGDTIQPQHQSISSIKESKSMFNVNVDQETFGSAVSESVSKSSRGEVKIHFSETRSFNKPREVNNKMEVSQPPPVKPQQTLRSTRSRSEGMSTRRVQLSNRERLLLRKQALKMKKQPVLAVGRSNIVTGVAKNIKEHFKKYPLAIVNVKGRAKGTSVREVVFKLEQATGAVLVSQEPSKVILYRGWGPGGERGASNGNDTSNSKNSREQKELMSISPELISAIRLECGLQSNNDMEVAS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64400" stop="64191"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VQSLELSSNNAFVHPMMVSELSVHASNNCFLGVELESKLCITSPIQMKGNRLPPNFSPCRISVAGISST*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="69059" PGL_stop="68938"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69059" e_stop="68938"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="69059" e_stop="68938" e_length="122"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69059" stop="68938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U603866" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCGAGGGATAGGGAATTTATTGTCTTCTACCGAGGGAAGGACTTCTTGCCCTCTGCAGTCTCTTCAGCAATAGAAGAACGGAGAAAGCAAGTTTTTGAAGAGGAAAAGCGGAATGGTTTTAA</gDNA_template>
            <first_frame> S  R  D  R  E  F  I  V  F  Y  R  G  K  D  F  L  P  S  A  V  S  S  A  I  E  E  R  R  K  Q  V  F  E  E  E  K  R  N  G  F   </first_frame>
            <second_frame>  R  G  I  G  N  L  L  S  S  T  E  G  R  T  S  C  P  L  Q  S  L  Q  Q  *  K  N  G  E  S  K  F  L  K  R  K  S  G  M  V  L  </second_frame>
            <third_frame>   E  G  *  G  I  Y  C  L  L  P  R  E  G  L  L  A  L  C  S  L  F  S  N  R  R  T  E  K  A  S  F  *  R  G  K  A  E  W  F  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0189G15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="71129" PGL_stop="69710"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71129" e_stop="70399"/>
            <exon e_start="69926" e_stop="69710"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.218" e_score="0.999"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="71129" e_stop="70399" e_length="731"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.218">
            <gDNA_intron_boundary i_start="70398" i_stop="69927" i_length="472"/>
          </intron>
          <exon e_serial="2" e_score="0.982">
            <gDNA_exon_boundary e_start="69926" e_stop="69710" e_length="217"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71129" stop="70399"/>
              <exon start="69926" stop="69710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U573940" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATCATCTTCCTCAACACCAATGTTGCTTCCTTTCTGCAACTTCCATCCCATAAACCCTTCTAAAACCCTCTTAAAACCCTCACCATCACATTCCCTCTTCTCTAGTACACCCTCTCTTTCTCCAAAACCCTTCTTTCCTCGTGATTCCCTTCCTGTTTTCGCCGCATCCCCTGATACTGAAGCTTTACCGGAATCCGCCATCCGAAGAATCGCCGACAAGCTACGCAGTCTTGGATTTGTTGAACAACCCAAGAATCAAGAAACCCAAGAAAATGCTTTGAGTTCTAATCCCACTGCAAACTCACCCGGTCAAATTTTCGTTCCTTTGCCTACCCAATTACCCAAGTACCGCGTGGGTCACACGCTTGACACCAGTTGGAGTACGCCTGAAAACCCAGTACCGCAGCCTGGTTTAGGGAAATCTATACAGAAGTTTCATGAATTGAGGGATGAGTTCTTGAAGGAGAAGGACAAGGAGAGGTTGAAGAATAAGGAGTATAAGAAAGAGAGAGCGCCTAGTTTGGCGGAGCTTACTTTGCCAGCTGAGGAATTGAGGAGGCTGAGGACAGTTGGGATTGCGCTCAGGAAAAAGTTAAAGATTGGAAAGGCTGGGATTACTGAGGGGATTGTGAATGGTATTCATGAAAGATGGAGGCGTATCGAGCTTGTTAAAATTACGTGCGAGGACATATGTAGGTTGAATATGAAGAGGACTCATGAGTTGTTAGAG : AAGAAAACTGGAGGTCTTGTTATATGGAGATCTGGAAGTAATATAATTTTGTATAGAGGAGCTGATTACAAGTATCCTTATTTCTCTGAGAATAGCTTCGAGAATAACAGTGCACAAGATGCTAACCCTGACTTGTTCATGGGTGCGGAAGAGCACATGACTAACTCATCTGGCATAGATGCGGTAAAATCTGATGCATCGGACAGAAAATCTCCTC</gDNA_template>
            <first_frame> H  H  L  P  Q  H  Q  C  C  F  L  S  A  T  S  I  P  *  T  L  L  K  P  S  *  N  P  H  H  H  I  P  S  S  L  V  H  P  L  F  L  Q  N  P  S  F  L  V  I  P  F  L  F  S  P  H  P  L  I  L  K  L  Y  R  N  P  P  S  E  E  S  P  T  S  Y  A  V  L  D  L  L  N  N  P  R  I  K  K  P  K  K  M  L  *  V  L  I  P  L  Q  T  H  P  V  K  F  S  F  L  C  L  P  N  Y  P  S  T  A  W  V  T  R  L  T  P  V  G  V  R  L  K  T  Q  Y  R  S  L  V  *  G  N  L  Y  R  S  F  M  N  *  G  M  S  S  *  R  R  R  T  R  R  G  *  R  I  R  S  I  R  K  R  E  R  L  V  W  R  S  L  L  C  Q  L  R  N  *  G  G  *  G  Q  L  G  L  R  S  G  K  S  *  R  L  E  R  L  G  L  L  R  G  L  *  M  V  F  M  K  D  G  G  V  S  S  L  L  K  L  R  A  R  T  Y  V  G  *  I  *  R  G  L  M  S  C  *  R :   R  K  L  E  V  L  L  Y  G  D  L  E  V  I  *  F  C  I  E  E  L  I  T  S  I  L  I  S  L  R  I  A  S  R  I  T  V  H  K  M  L  T  L  T  C  S  W  V  R  K  S  T  *  L  T  H  L  A  *  M  R  *  N  L  M  H  R  T  E  N  L  L </first_frame>
            <second_frame>  I  I  F  L  N  T  N  V  A  S  F  L  Q  L  P  S  H  K  P  F  *  N  P  L  K  T  L  T  I  T  F  P  L  L  *  Y  T  L  S  F  S  K  T  L  L  S  S  *  F  P  S  C  F  R  R  I  P  *  Y  *  S  F  T  G  I  R  H  P  K  N  R  R  Q  A  T  Q  S  W  I  C  *  T  T  Q  E  S  R  N  P  R  K  C  F  E  F  *  S  H  C  K  L  T  R  S  N  F  R  S  F  A  Y  P  I  T  Q  V  P  R  G  S  H  A  *  H  Q  L  E  Y  A  *  K  P  S  T  A  A  W  F  R  E  I  Y  T  E  V  S  *  I  E  G  *  V  L  E  G  E  G  Q  G  E  V  E  E  *  G  V  *  E  R  E  S  A  *  F  G  G  A  Y  F  A  S  *  G  I  E  E  A  E  D  S  W  D  C  A  Q  E  K  V  K  D  W  K  G  W  D  Y  *  G  D  C  E  W  Y  S  *  K  M  E  A  Y  R  A  C  *  N  Y  V  R  G  H  M  *  V  E  Y  E  E  D  S  *  V  V  R   : E  E  N  W  R  S  C  Y  M  E  I  W  K  *  Y  N  F  V  *  R  S  *  L  Q  V  S  L  F  L  *  E  *  L  R  E  *  Q  C  T  R  C  *  P  *  L  V  H  G  C  G  R  A  H  D  *  L  I  W  H  R  C  G  K  I  *  C  I  G  Q  K  I  S   </second_frame>
            <third_frame>   S  S  S  S  T  P  M  L  L  P  F  C  N  F  H  P  I  N  P  S  K  T  L  L  K  P  S  P  S  H  S  L  F  S  S  T  P  S  L  S  P  K  P  F  F  P  R  D  S  L  P  V  F  A  A  S  P  D  T  E  A  L  P  E  S  A  I  R  R  I  A  D  K  L  R  S  L  G  F  V  E  Q  P  K  N  Q  E  T  Q  E  N  A  L  S  S  N  P  T  A  N  S  P  G  Q  I  F  V  P  L  P  T  Q  L  P  K  Y  R  V  G  H  T  L  D  T  S  W  S  T  P  E  N  P  V  P  Q  P  G  L  G  K  S  I  Q  K  F  H  E  L  R  D  E  F  L  K  E  K  D  K  E  R  L  K  N  K  E  Y  K  K  E  R  A  P  S  L  A  E  L  T  L  P  A  E  E  L  R  R  L  R  T  V  G  I  A  L  R  K  K  L  K  I  G  K  A  G  I  T  E  G  I  V  N  G  I  H  E  R  W  R  R  I  E  L  V  K  I  T  C  E  D  I  C  R  L  N  M  K  R  T  H  E  L  L  E  :  K  K  T  G  G  L  V  I  W  R  S  G  S  N  I  I  L  Y  R  G  A  D  Y  K  Y  P  Y  F  S  E  N  S  F  E  N  N  S  A  Q  D  A  N  P  D  L  F  M  G  A  E  E  H  M  T  N  S  S  G  I  D  A  V  K  S  D  A  S  D  R  K  S  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71127" stop="70399"/>
                    <exon start="69926" stop="69711"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>945</number_coding_nucleotides>
                  <number_encoded_amino_acids>315</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSSSTPMLLPFCNFHPINPSKTLLKPSPSHSLFSSTPSLSPKPFFPRDSLPVFAASPDTEALPESAIRRIADKLRSLGFVEQPKNQETQENALSSNPTANSPGQIFVPLPTQLPKYRVGHTLDTSWSTPENPVPQPGLGKSIQKFHELRDEFLKEKDKERLKNKEYKKERAPSLAELTLPAEELRRLRTVGIALRKKLKIGKAGITEGIVNGIHERWRRIELVKITCEDICRLNMKRTHELLEKKTGGLVIWRSGSNIILYRGADYKYPYFSENSFENNSAQDANPDLFMGAEEHMTNSSGIDAVKSDASDRKSP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="75457" PGL_stop="72159"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75457" e_stop="75228"/>
            <exon e_start="74685" e_stop="74650"/>
            <exon e_start="74030" e_stop="73829"/>
            <exon e_start="72816" e_stop="72738"/>
            <exon e_start="72647" e_stop="72530"/>
            <exon e_start="72379" e_stop="72159"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.953" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.934" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.865" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="75457" e_stop="75228" e_length="230"/>
          </exon>
          <intron i_serial="1" don_prob="0.953" acc_prob="0.995">
            <gDNA_intron_boundary i_start="75227" i_stop="74686" i_length="542"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74685" e_stop="74650" e_length="36"/>
          </exon>
          <intron i_serial="2" don_prob="0.934" acc_prob="0.999">
            <gDNA_intron_boundary i_start="74649" i_stop="74031" i_length="619"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="74030" e_stop="73829" e_length="202"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="73828" i_stop="72817" i_length="1012"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="72816" e_stop="72738" e_length="79"/>
          </exon>
          <intron i_serial="4" don_prob="0.987" acc_prob="0.952">
            <gDNA_intron_boundary i_start="72737" i_stop="72648" i_length="90"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="72647" e_stop="72530" e_length="118"/>
          </exon>
          <intron i_serial="5" don_prob="0.944" acc_prob="0.865">
            <gDNA_intron_boundary i_start="72529" i_stop="72380" i_length="150"/>
          </intron>
          <exon e_serial="6" e_score="0.995">
            <gDNA_exon_boundary e_start="72379" e_stop="72159" e_length="221"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75457" stop="75228"/>
              <exon start="74685" stop="74650"/>
              <exon start="74030" stop="73829"/>
              <exon start="72816" stop="72738"/>
              <exon start="72647" stop="72530"/>
              <exon start="72379" stop="72159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U578677" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATAAATACCAGACAGTACTCTGCAAACACTCCTACATTTGTACAGTAAACATCATGAATATCATCAACAGGGCAGCTTCGATTTTTCTTCTTTTGGTGTTCTTCTTGGCTTTTTTCAAAGATTCTGTTCATGGGCGCCCTCTTTTACTGTCAATGTCCAGACCCAAGCCGGATGATGCTGCCTTATTTGCTCGATGGCTCGTTTCTCAGAATTATTGGGGTGTCCTCAA : TACTATAGCAAGTGATATGGGAGGAGCACCGTTCGG : GAATGTTGTCTCATTTAGTGATGGGTTACCGGACAAAGGCCGTGGTATACCATACTTCTACTTAACAACGCTTGATCCCACTGCTAGAAATGCATTGAAAGACCAGAGATCATCATTTACAATCAGTGAGTACGCCATTGGAACTTGCGGCAAGAAAGATCCTGAGAACCCATCTTGTGCCAAAATTACCCTCGTAGGAAAG : TTGAAAGTGGTTGCTGGAGATCCAAAGGAAACTAGCTTTGCTCAAACTGCTTTATTTACAAAACACCCTGAGATGGAAG : GTTGGCCCAAGAGTCACGATTTCCAGATATACAAATTAGAGATTGAAGAGATATTTATGATCAATTGGTTTGGTGGTCCCAAACCTCTCACCGTGGATCAGTATTTGCAGGCTAAAAT : GGATAGTCACATGACCATTGCATGAACGCCTTTATGTATACAATCTGCTGACAAGTTCTTTTCAAGTGAAGGTTGAAAGTGGTTTTGGAATGTGAAAAAAGGGTATCAATTTTAGTGATCAATGAAATTCAACTGTAAATAGGAGATACTTGTGAAGCTCATTATCATTCATTCACTTGTGCATTTGACATTTTGTATGATTTCTGGTTTGTAAAATAATG</gDNA_template>
            <first_frame> N  K  Y  Q  T  V  L  C  K  H  S  Y  I  C  T  V  N  I  M  N  I  I  N  R  A  A  S  I  F  L  L  L  V  F  F  L  A  F  F  K  D  S  V  H  G  R  P  L  L  L  S  M  S  R  P  K  P  D  D  A  A  L  F  A  R  W  L  V  S  Q  N  Y  W  G  V  L  N :   T  I  A  S  D  M  G  G  A  P  F  G :   N  V  V  S  F  S  D  G  L  P  D  K  G  R  G  I  P  Y  F  Y  L  T  T  L  D  P  T  A  R  N  A  L  K  D  Q  R  S  S  F  T  I  S  E  Y  A  I  G  T  C  G  K  K  D  P  E  N  P  S  C  A  K  I  T  L  V  G  K  :  L  K  V  V  A  G  D  P  K  E  T  S  F  A  Q  T  A  L  F  T  K  H  P  E  M  E   : G  W  P  K  S  H  D  F  Q  I  Y  K  L  E  I  E  E  I  F  M  I  N  W  F  G  G  P  K  P  L  T  V  D  Q  Y  L  Q  A  K  M :   D  S  H  M  T  I  A  *  T  P  L  C  I  Q  S  A  D  K  F  F  S  S  E  G  *  K  W  F  W  N  V  K  K  G  Y  Q  F  *  *  S  M  K  F  N  C  K  *  E  I  L  V  K  L  I  I  I  H  S  L  V  H  L  T  F  C  M  I  S  G  L  *  N  N  </first_frame>
            <second_frame>  I  N  T  R  Q  Y  S  A  N  T  P  T  F  V  Q  *  T  S  *  I  S  S  T  G  Q  L  R  F  F  F  F  W  C  S  S  W  L  F  S  K  I  L  F  M  G  A  L  F  Y  C  Q  C  P  D  P  S  R  M  M  L  P  Y  L  L  D  G  S  F  L  R  I  I  G  V  S  S   : I  L  *  Q  V  I  W  E  E  H  R  S   : G  M  L  S  H  L  V  M  G  Y  R  T  K  A  V  V  Y  H  T  S  T  *  Q  R  L  I  P  L  L  E  M  H  *  K  T  R  D  H  H  L  Q  S  V  S  T  P  L  E  L  A  A  R  K  I  L  R  T  H  L  V  P  K  L  P  S  *  E  S :   *  K  W  L  L  E  I  Q  R  K  L  A  L  L  K  L  L  Y  L  Q  N  T  L  R  W  K  :  V  G  P  R  V  T  I  S  R  Y  T  N  *  R  L  K  R  Y  L  *  S  I  G  L  V  V  P  N  L  S  P  W  I  S  I  C  R  L  K   : W  I  V  T  *  P  L  H  E  R  L  Y  V  Y  N  L  L  T  S  S  F  Q  V  K  V  E  S  G  F  G  M  *  K  K  G  I  N  F  S  D  Q  *  N  S  T  V  N  R  R  Y  L  *  S  S  L  S  F  I  H  L  C  I  *  H  F  V  *  F  L  V  C  K  I  M </second_frame>
            <third_frame>   *  I  P  D  S  T  L  Q  T  L  L  H  L  Y  S  K  H  H  E  Y  H  Q  Q  G  S  F  D  F  S  S  F  G  V  L  L  G  F  F  Q  R  F  C  S  W  A  P  S  F  T  V  N  V  Q  T  Q  A  G  *  C  C  L  I  C  S  M  A  R  F  S  E  L  L  G  C  P  Q  :  Y  Y  S  K  *  Y  G  R  S  T  V  R  :  E  C  C  L  I  *  *  W  V  T  G  Q  R  P  W  Y  T  I  L  L  L  N  N  A  *  S  H  C  *  K  C  I  E  R  P  E  I  I  I  Y  N  Q  *  V  R  H  W  N  L  R  Q  E  R  S  *  E  P  I  L  C  Q  N  Y  P  R  R  K   : V  E  S  G  C  W  R  S  K  G  N  *  L  C  S  N  C  F  I  Y  K  T  P  *  D  G  R :   L  A  Q  E  S  R  F  P  D  I  Q  I  R  D  *  R  D  I  Y  D  Q  L  V  W  W  S  Q  T  S  H  R  G  S  V  F  A  G  *  N  :  G  *  S  H  D  H  C  M  N  A  F  M  Y  T  I  C  *  Q  V  L  F  K  *  R  L  K  V  V  L  E  C  E  K  R  V  S  I  L  V  I  N  E  I  Q  L  *  I  G  D  T  C  E  A  H  Y  H  S  F  T  C  A  F  D  I  L  Y  D  F  W  F  V  K  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75457" stop="75228"/>
                    <exon start="74685" stop="74650"/>
                    <exon start="74030" stop="73829"/>
                    <exon start="72816" stop="72738"/>
                    <exon start="72647" stop="72530"/>
                    <exon start="72379" stop="72355"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>687</number_coding_nucleotides>
                  <number_encoded_amino_acids>229</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NKYQTVLCKHSYICTVNIMNIINRAASIFLLLVFFLAFFKDSVHGRPLLLSMSRPKPDDAALFARWLVSQNYWGVLNTIASDMGGAPFGNVVSFSDGLPDKGRGIPYFYLTTLDPTARNALKDQRSSFTISEYAIGTCGKKDPENPSCAKITLVGKLKVVAGDPKETSFAQTALFTKHPEMEGWPKSHDFQIYKLEIEEIFMINWFGGPKPLTVDQYLQAKMDSHMTIA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="92048" PGL_stop="93488"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92048" e_stop="93488"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="92048" e_stop="93488" e_length="1441"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92048" stop="93488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U584001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92131" stop="92415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U587720" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTAAGAAGGAAGGGAAAAAGAAAGGAGTATATGAGTCTTGGAAAGTCAGGTGAGCAGAAAATTGAGCCTAAATAGGCAGGCACAGCCTGGCCAGATCAACGAAGCTTCTCTATAACATAGAATTTCTTGAGATCTAACGATAATCAAAGTCAACAATGGGGCTATTCAGCTATACTGTCGCCGGCGGCGGATTTATACTAATCGGCGCTTGGGAATCTCTGGTCTCTTCTTCTGGTGCCCTGAAAAATTCATCACCGTCGTCCACTACCCAATCGCCGCCACAAAATCCATCGACAGATAAGCATGAGCAAGATTCTGTTTTTTCTTCATCGGTCACCTTTGTATTAATCTTAATCCTTTCGTTCCTTTTCGTTCTCGATTCCTTGTTATCCTTTTTCGACGCACTCAACTCCAAAGACAACATTGGTTCCGTCCTTCAATTGCAGGTTATCGCGATTTCTCTTCTTTTCTTTCTCTATTCGGTATTAGGTCTCATGACCCGCTTGAAAAGTTCTTTTCATTTACCTTCACCGATCCTCAATTTGCTTTGCCTCTTCGCTTTTGCTGAGGAATTTTTGTTGTTTTATCTTCAAAGGAAAGACCCAAGTGGAGTTGAAAATCGTTACTATAATCTCTTGCTTGTGCCTATTGCTATTTGTGCATTTTGTTCATTTCTAGAATTGAAAAATCCCAAATCAAATTACACTAGATTAGGACGTGGGATTGGGTTAATCTTGCAAGGGACGTGGACTCTTCAAATGGGGTTTGCTTTTTTCTCCGATTTGATTGCACAGGGATGCTATTTACATCAAAGGAGTAGAGGTAATTACACGGTTAAGTGTAAAGGTCATCCTCAGTACCATCGAGGTGGAGCTATTGCTACCCTTCAGTTCAATTGCCACCTTGCTCTTCTTGTGACTGTGATTACTTTTGTATACTCAATTGTGTGTAAAAAACATGGCATTGGCCGTGAACATATGCGGTATAGACCTATTGGAGCTGAGATGCAACACTTGGAAATCGATAGTCAAGCTCATTTTACATTGGAGTCTGATGAAGAGGATGACAATGAGAATGGGATAAAAGAAGAGATGAATGTTGAAATGCAAAAGGCTATTGTACCTGTTCCTGAATCAGAAACTAATGGCTATCATACCCATCCTTGAGGAAACCCATGGTTCATTTTTTATGTTACTGGGTATAAAGATATATTCTTTGCAGAGGGGTTATGGTTTAGAGGTTGGGGTTCCCTTTGTATAAAGAATTTACATATAGAAAAGAGAAAGTTTCAGTCTTTTTGTATTTGATGATTCTAGTTCAAATTGTAATGTTGTCTTAGAAATTTTCTTTGAAGTGATTTAAGTATATTTTCCTTTATTGTGTGTCTATGGAAGACTTACTCTTTGATAGTAATGACGACTAACTTTCTTAACAAAAGGA</gDNA_template>
            <first_frame> C  K  K  E  G  K  K  K  G  V  Y  E  S  W  K  V  R  *  A  E  N  *  A  *  I  G  R  H  S  L  A  R  S  T  K  L  L  Y  N  I  E  F  L  E  I  *  R  *  S  K  S  T  M  G  L  F  S  Y  T  V  A  G  G  G  F  I  L  I  G  A  W  E  S  L  V  S  S  S  G  A  L  K  N  S  S  P  S  S  T  T  Q  S  P  P  Q  N  P  S  T  D  K  H  E  Q  D  S  V  F  S  S  S  V  T  F  V  L  I  L  I  L  S  F  L  F  V  L  D  S  L  L  S  F  F  D  A  L  N  S  K  D  N  I  G  S  V  L  Q  L  Q  V  I  A  I  S  L  L  F  F  L  Y  S  V  L  G  L  M  T  R  L  K  S  S  F  H  L  P  S  P  I  L  N  L  L  C  L  F  A  F  A  E  E  F  L  L  F  Y  L  Q  R  K  D  P  S  G  V  E  N  R  Y  Y  N  L  L  L  V  P  I  A  I  C  A  F  C  S  F  L  E  L  K  N  P  K  S  N  Y  T  R  L  G  R  G  I  G  L  I  L  Q  G  T  W  T  L  Q  M  G  F  A  F  F  S  D  L  I  A  Q  G  C  Y  L  H  Q  R  S  R  G  N  Y  T  V  K  C  K  G  H  P  Q  Y  H  R  G  G  A  I  A  T  L  Q  F  N  C  H  L  A  L  L  V  T  V  I  T  F  V  Y  S  I  V  C  K  K  H  G  I  G  R  E  H  M  R  Y  R  P  I  G  A  E  M  Q  H  L  E  I  D  S  Q  A  H  F  T  L  E  S  D  E  E  D  D  N  E  N  G  I  K  E  E  M  N  V  E  M  Q  K  A  I  V  P  V  P  E  S  E  T  N  G  Y  H  T  H  P  *  G  N  P  W  F  I  F  Y  V  T  G  Y  K  D  I  F  F  A  E  G  L  W  F  R  G  W  G  S  L  C  I  K  N  L  H  I  E  K  R  K  F  Q  S  F  C  I  *  *  F  *  F  K  L  *  C  C  L  R  N  F  L  *  S  D  L  S  I  F  S  F  I  V  C  L  W  K  T  Y  S  L  I  V  M  T  T  N  F  L  N  K  R  </first_frame>
            <second_frame>  V  R  R  K  G  K  R  K  E  Y  M  S  L  G  K  S  G  E  Q  K  I  E  P  K  *  A  G  T  A  W  P  D  Q  R  S  F  S  I  T  *  N  F  L  R  S  N  D  N  Q  S  Q  Q  W  G  Y  S  A  I  L  S  P  A  A  D  L  Y  *  S  A  L  G  N  L  W  S  L  L  L  V  P  *  K  I  H  H  R  R  P  L  P  N  R  R  H  K  I  H  R  Q  I  S  M  S  K  I  L  F  F  L  H  R  S  P  L  Y  *  S  *  S  F  R  S  F  S  F  S  I  P  C  Y  P  F  S  T  H  S  T  P  K  T  T  L  V  P  S  F  N  C  R  L  S  R  F  L  F  F  S  F  S  I  R  Y  *  V  S  *  P  A  *  K  V  L  F  I  Y  L  H  R  S  S  I  C  F  A  S  S  L  L  L  R  N  F  C  C  F  I  F  K  G  K  T  Q  V  E  L  K  I  V  T  I  I  S  C  L  C  L  L  L  F  V  H  F  V  H  F  *  N  *  K  I  P  N  Q  I  T  L  D  *  D  V  G  L  G  *  S  C  K  G  R  G  L  F  K  W  G  L  L  F  S  P  I  *  L  H  R  D  A  I  Y  I  K  G  V  E  V  I  T  R  L  S  V  K  V  I  L  S  T  I  E  V  E  L  L  L  P  F  S  S  I  A  T  L  L  F  L  *  L  *  L  L  L  Y  T  Q  L  C  V  K  N  M  A  L  A  V  N  I  C  G  I  D  L  L  E  L  R  C  N  T  W  K  S  I  V  K  L  I  L  H  W  S  L  M  K  R  M  T  M  R  M  G  *  K  K  R  *  M  L  K  C  K  R  L  L  Y  L  F  L  N  Q  K  L  M  A  I  I  P  I  L  E  E  T  H  G  S  F  F  M  L  L  G  I  K  I  Y  S  L  Q  R  G  Y  G  L  E  V  G  V  P  F  V  *  R  I  Y  I  *  K  R  E  S  F  S  L  F  V  F  D  D  S  S  S  N  C  N  V  V  L  E  I  F  F  E  V  I  *  V  Y  F  P  L  L  C  V  Y  G  R  L  T  L  *  *  *  *  R  L  T  F  L  T  K  G </second_frame>
            <third_frame>   *  E  G  R  E  K  E  R  S  I  *  V  L  E  S  Q  V  S  R  K  L  S  L  N  R  Q  A  Q  P  G  Q  I  N  E  A  S  L  *  H  R  I  S  *  D  L  T  I  I  K  V  N  N  G  A  I  Q  L  Y  C  R  R  R  R  I  Y  T  N  R  R  L  G  I  S  G  L  F  F  W  C  P  E  K  F  I  T  V  V  H  Y  P  I  A  A  T  K  S  I  D  R  *  A  *  A  R  F  C  F  F  F  I  G  H  L  C  I  N  L  N  P  F  V  P  F  R  S  R  F  L  V  I  L  F  R  R  T  Q  L  Q  R  Q  H  W  F  R  P  S  I  A  G  Y  R  D  F  S  S  F  L  S  L  F  G  I  R  S  H  D  P  L  E  K  F  F  S  F  T  F  T  D  P  Q  F  A  L  P  L  R  F  C  *  G  I  F  V  V  L  S  S  K  E  R  P  K  W  S  *  K  S  L  L  *  S  L  A  C  A  Y  C  Y  L  C  I  L  F  I  S  R  I  E  K  S  Q  I  K  L  H  *  I  R  T  W  D  W  V  N  L  A  R  D  V  D  S  S  N  G  V  C  F  F  L  R  F  D  C  T  G  M  L  F  T  S  K  E  *  R  *  L  H  G  *  V  *  R  S  S  S  V  P  S  R  W  S  Y  C  Y  P  S  V  Q  L  P  P  C  S  S  C  D  C  D  Y  F  C  I  L  N  C  V  *  K  T  W  H  W  P  *  T  Y  A  V  *  T  Y  W  S  *  D  A  T  L  G  N  R  *  S  S  S  F  Y  I  G  V  *  *  R  G  *  Q  *  E  W  D  K  R  R  D  E  C  *  N  A  K  G  Y  C  T  C  S  *  I  R  N  *  W  L  S  Y  P  S  L  R  K  P  M  V  H  F  L  C  Y  W  V  *  R  Y  I  L  C  R  G  V  M  V  *  R  L  G  F  P  L  Y  K  E  F  T  Y  R  K  E  K  V  S  V  F  L  Y  L  M  I  L  V  Q  I  V  M  L  S  *  K  F  S  L  K  *  F  K  Y  I  F  L  Y  C  V  S  M  E  D  L  L  F  D  S  N  D  D  *  L  S  *  Q  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92192" stop="93214"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1020</number_coding_nucleotides>
                  <number_encoded_amino_acids>340</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKSTMGLFSYTVAGGGFILIGAWESLVSSSGALKNSSPSSTTQSPPQNPSTDKHEQDSVFSSSVTFVLILILSFLFVLDSLLSFFDALNSKDNIGSVLQLQVIAISLLFFLYSVLGLMTRLKSSFHLPSPILNLLCLFAFAEEFLLFYLQRKDPSGVENRYYNLLLVPIAICAFCSFLELKNPKSNYTRLGRGIGLILQGTWTLQMGFAFFSDLIAQGCYLHQRSRGNYTVKCKGHPQYHRGGAIATLQFNCHLALLVTVITFVYSIVCKKHGIGREHMRYRPIGAEMQHLEIDSQAHFTLESDEEDDNENGIKEEMNVEMQKAIVPVPESETNGYHTHP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="100638" PGL_stop="97162"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100638" e_stop="100574"/>
            <exon e_start="100491" e_stop="100274"/>
            <exon e_start="98776" e_stop="98256"/>
            <exon e_start="98095" e_stop="97162"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.857" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.550" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="100638" e_stop="100574" e_length="65"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="1.000">
            <gDNA_intron_boundary i_start="100573" i_stop="100492" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="100491" e_stop="100274" e_length="218"/>
          </exon>
          <intron i_serial="2" don_prob="0.964" acc_prob="0.857">
            <gDNA_intron_boundary i_start="100273" i_stop="98777" i_length="1497"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="98776" e_stop="98256" e_length="521"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.550">
            <gDNA_intron_boundary i_start="98255" i_stop="98096" i_length="160"/>
          </intron>
          <exon e_serial="4" e_score="0.999">
            <gDNA_exon_boundary e_start="98095" e_stop="97162" e_length="934"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100638" stop="100574"/>
              <exon start="100491" stop="100274"/>
              <exon start="98776" stop="98401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U603069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98405" stop="98256"/>
              <exon start="98095" stop="97162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U563781" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAATTTCTCATGGCTGGAGGACAAAGTCCAAGAAATCTCAACAAACCATGTATTCTCCTCATAG : TAATAGCGGGAATGGAGAGGTTTTCATTCAAAGGGGTGGCATCAAATTTAGTGACATATCTAACAGACGTGGCCAAAATGAGCAATTCAGCTGCAGCAAAGATGGTTAACAATTGGTGTGGTATTACTTCTATGTTGCCATTGCTGGTTGCTCCACTAGCTGATTCTTATTTGGACCGCTACACCACTGTATTGGCTTCTTCTTCTCTATATTTTGCC : GGTCTTTTAGCTTTGACATCATTGGCATTACAATGGCCATGGACATCCTTGGACAAATCGGGCTTCTCTTCATCGTTATCATGGTCTCTGCATTTAATTTCACTAGGCCAAGCGGGTTACAACCCGTCCTTACAAGCTTTTGCAGCGGACCAATTGGATGACGAAGAAGAATTGCCCTGTACAAAGAATGACCAAAGCTCCAAGAAAAAGAGCACATTTTTCCACTGGTGGTATTTTGGCATATGTTGTGGCAGTCTACTTGGAGTGTCCATTATGTCGTACATACAGGACACGTTAGGATGGGGATTAGGTTTCGCCATTCCCTCGATTGCCATGATAGTGTCGATTGTAGTCTTCAGATTTGGCAACAGGTTTTATACACATAACACGGATGGTGAAATTATTCATATCAAGTCCTTGGGAGGTCATATAGTTAAAGCTATTAGAGCGGCTACCTCAAGATTGACCTGTGGTGAGATTGCGGTACCAGATACCAACAAGTCAAAAGTTGTTGAGATCGA : ACTTGAAAATGCACCACTCTGCCAACAAGATTCAGGCAGCACGGAGGGTACGGATAAAAAGCCGGAGAATGGGATAGTAGAAATTCTAAAAGTAGTACTACCTCTACTGCCAGTATGGACTATGCTTCTGATGTTTGCAGTGATTTTTCAACAACCTGCAACATTTTTCACTAAACAAGGTATGACAATGAGGAGAAACATCGGAAGCAGCTTCCGAATTCCACCAGCTGCACTTCAGAGTTCAATCACAATATCTATAATCCTGCTTATGCCTCTTTACGACACGTGCTTTATCCCCTTCATTCGTGTTTTGACACGTAATGAGAAAGGCATCACTGTGATGCAGAGAATGGGAATAGGGATGTTTCTTTCAGTGATAGCAATGATAATTGCTGCTGTTACCGAAAGAAAAAGACTGGATATTGCCAGAAATGTAGGTACTTTAACTTCAGAATTCGAAGCTTTGCCAATGAGCATATTTTGGTTGCTGCCTCAGTACATCTTATTGGGAATTTCAGATATATTCACAGTTGTTGGTATGCAAGAGTTCTTTTACTCTGAAGTTCCGATAAATATGAGAACTTTAGGCATAGCTCTTTATACTAGTGTATTTGGTTGTGGTAGTTTCTTCAGCTCATTCCTTATAACAGTGATTGAACATTTGACAAGTTCAATAGGAGAAAAGCAGAACTGGTTCGCCGATGACATGAGCAGAGCCCGTTTAGACAACTATTACTGGTTTCTGGCATTGTCAAGTGCAGCCAGTTTTATGATGTTTATGGTTTTCTGTCGATTTTATAGAAGCAGGACAGTTAATTAGAGTGTTGGTAGTGACTGATAATTTGTTATTGTGGAATGTTGTGTTTTGCACATTCATTTTTCTAAGTAGAAAGTGAAGGTTCTGCACTTGTATATAAAGGAAGATATATCTAGT</gDNA_template>
            <first_frame> I  I  S  H  G  W  R  T  K  S  K  K  S  Q  Q  T  M  Y  S  P  H  S :   N  S  G  N  G  E  V  F  I  Q  R  G  G  I  K  F  S  D  I  S  N  R  R  G  Q  N  E  Q  F  S  C  S  K  D  G  *  Q  L  V  W  Y  Y  F  Y  V  A  I  A  G  C  S  T  S  *  F  L  F  G  P  L  H  H  C  I  G  F  F  F  S  I  F  C   : R  S  F  S  F  D  I  I  G  I  T  M  A  M  D  I  L  G  Q  I  G  L  L  F  I  V  I  M  V  S  A  F  N  F  T  R  P  S  G  L  Q  P  V  L  T  S  F  C  S  G  P  I  G  *  R  R  R  I  A  L  Y  K  E  *  P  K  L  Q  E  K  E  H  I  F  P  L  V  V  F  W  H  M  L  W  Q  S  T  W  S  V  H  Y  V  V  H  T  G  H  V  R  M  G  I  R  F  R  H  S  L  D  C  H  D  S  V  D  C  S  L  Q  I  W  Q  Q  V  L  Y  T  *  H  G  W  *  N  Y  S  Y  Q  V  L  G  R  S  Y  S  *  S  Y  *  S  G  Y  L  K  I  D  L  W  *  D  C  G  T  R  Y  Q  Q  V  K  S  C  *  D  R  :  T  *  K  C  T  T  L  P  T  R  F  R  Q  H  G  G  Y  G  *  K  A  G  E  W  D  S  R  N  S  K  S  S  T  T  S  T  A  S  M  D  Y  A  S  D  V  C  S  D  F  S  T  T  C  N  I  F  H  *  T  R  Y  D  N  E  E  K  H  R  K  Q  L  P  N  S  T  S  C  T  S  E  F  N  H  N  I  Y  N  P  A  Y  A  S  L  R  H  V  L  Y  P  L  H  S  C  F  D  T  *  *  E  R  H  H  C  D  A  E  N  G  N  R  D  V  S  F  S  D  S  N  D  N  C  C  C  Y  R  K  K  K  T  G  Y  C  Q  K  C  R  Y  F  N  F  R  I  R  S  F  A  N  E  H  I  L  V  A  A  S  V  H  L  I  G  N  F  R  Y  I  H  S  C  W  Y  A  R  V  L  L  L  *  S  S  D  K  Y  E  N  F  R  H  S  S  L  Y  *  C  I  W  L  W  *  F  L  Q  L  I  P  Y  N  S  D  *  T  F  D  K  F  N  R  R  K  A  E  L  V  R  R  *  H  E  Q  S  P  F  R  Q  L  L  L  V  S  G  I  V  K  C  S  Q  F  Y  D  V  Y  G  F  L  S  I  L  *  K  Q  D  S  *  L  E  C  W  *  *  L  I  I  C  Y  C  G  M  L  C  F  A  H  S  F  F  *  V  E  S  E  G  S  A  L  V  Y  K  G  R  Y  I  *  </first_frame>
            <second_frame>  *  F  L  M  A  G  G  Q  S  P  R  N  L  N  K  P  C  I  L  L  I   : V  I  A  G  M  E  R  F  S  F  K  G  V  A  S  N  L  V  T  Y  L  T  D  V  A  K  M  S  N  S  A  A  A  K  M  V  N  N  W  C  G  I  T  S  M  L  P  L  L  V  A  P  L  A  D  S  Y  L  D  R  Y  T  T  V  L  A  S  S  S  L  Y  F  A  :  G  L  L  A  L  T  S  L  A  L  Q  W  P  W  T  S  L  D  K  S  G  F  S  S  S  L  S  W  S  L  H  L  I  S  L  G  Q  A  G  Y  N  P  S  L  Q  A  F  A  A  D  Q  L  D  D  E  E  E  L  P  C  T  K  N  D  Q  S  S  K  K  K  S  T  F  F  H  W  W  Y  F  G  I  C  C  G  S  L  L  G  V  S  I  M  S  Y  I  Q  D  T  L  G  W  G  L  G  F  A  I  P  S  I  A  M  I  V  S  I  V  V  F  R  F  G  N  R  F  Y  T  H  N  T  D  G  E  I  I  H  I  K  S  L  G  G  H  I  V  K  A  I  R  A  A  T  S  R  L  T  C  G  E  I  A  V  P  D  T  N  K  S  K  V  V  E  I  E :   L  E  N  A  P  L  C  Q  Q  D  S  G  S  T  E  G  T  D  K  K  P  E  N  G  I  V  E  I  L  K  V  V  L  P  L  L  P  V  W  T  M  L  L  M  F  A  V  I  F  Q  Q  P  A  T  F  F  T  K  Q  G  M  T  M  R  R  N  I  G  S  S  F  R  I  P  P  A  A  L  Q  S  S  I  T  I  S  I  I  L  L  M  P  L  Y  D  T  C  F  I  P  F  I  R  V  L  T  R  N  E  K  G  I  T  V  M  Q  R  M  G  I  G  M  F  L  S  V  I  A  M  I  I  A  A  V  T  E  R  K  R  L  D  I  A  R  N  V  G  T  L  T  S  E  F  E  A  L  P  M  S  I  F  W  L  L  P  Q  Y  I  L  L  G  I  S  D  I  F  T  V  V  G  M  Q  E  F  F  Y  S  E  V  P  I  N  M  R  T  L  G  I  A  L  Y  T  S  V  F  G  C  G  S  F  F  S  S  F  L  I  T  V  I  E  H  L  T  S  S  I  G  E  K  Q  N  W  F  A  D  D  M  S  R  A  R  L  D  N  Y  Y  W  F  L  A  L  S  S  A  A  S  F  M  M  F  M  V  F  C  R  F  Y  R  S  R  T  V  N  *  S  V  G  S  D  *  *  F  V  I  V  E  C  C  V  L  H  I  H  F  S  K  *  K  V  K  V  L  H  L  Y  I  K  E  D  I  S  S </second_frame>
            <third_frame>   N  F  S  W  L  E  D  K  V  Q  E  I  S  T  N  H  V  F  S  S  *  :  *  *  R  E  W  R  G  F  H  S  K  G  W  H  Q  I  *  *  H  I  *  Q  T  W  P  K  *  A  I  Q  L  Q  Q  R  W  L  T  I  G  V  V  L  L  L  C  C  H  C  W  L  L  H  *  L  I  L  I  W  T  A  T  P  L  Y  W  L  L  L  L  Y  I  L  P :   V  F  *  L  *  H  H  W  H  Y  N  G  H  G  H  P  W  T  N  R  A  S  L  H  R  Y  H  G  L  C  I  *  F  H  *  A  K  R  V  T  T  R  P  Y  K  L  L  Q  R  T  N  W  M  T  K  K  N  C  P  V  Q  R  M  T  K  A  P  R  K  R  A  H  F  S  T  G  G  I  L  A  Y  V  V  A  V  Y  L  E  C  P  L  C  R  T  Y  R  T  R  *  D  G  D  *  V  S  P  F  P  R  L  P  *  *  C  R  L  *  S  S  D  L  A  T  G  F  I  H  I  T  R  M  V  K  L  F  I  S  S  P  W  E  V  I  *  L  K  L  L  E  R  L  P  Q  D  *  P  V  V  R  L  R  Y  Q  I  P  T  S  Q  K  L  L  R  S   : N  L  K  M  H  H  S  A  N  K  I  Q  A  A  R  R  V  R  I  K  S  R  R  M  G  *  *  K  F  *  K  *  Y  Y  L  Y  C  Q  Y  G  L  C  F  *  C  L  Q  *  F  F  N  N  L  Q  H  F  S  L  N  K  V  *  Q  *  G  E  T  S  E  A  A  S  E  F  H  Q  L  H  F  R  V  Q  S  Q  Y  L  *  S  C  L  C  L  F  T  T  R  A  L  S  P  S  F  V  F  *  H  V  M  R  K  A  S  L  *  C  R  E  W  E  *  G  C  F  F  Q  *  *  Q  *  *  L  L  L  L  P  K  E  K  D  W  I  L  P  E  M  *  V  L  *  L  Q  N  S  K  L  C  Q  *  A  Y  F  G  C  C  L  S  T  S  Y  W  E  F  Q  I  Y  S  Q  L  L  V  C  K  S  S  F  T  L  K  F  R  *  I  *  E  L  *  A  *  L  F  I  L  V  Y  L  V  V  V  V  S  S  A  H  S  L  *  Q  *  L  N  I  *  Q  V  Q  *  E  K  S  R  T  G  S  P  M  T  *  A  E  P  V  *  T  T  I  T  G  F  W  H  C  Q  V  Q  P  V  L  *  C  L  W  F  S  V  D  F  I  E  A  G  Q  L  I  R  V  L  V  V  T  D  N  L  L  L  W  N  V  V  F  C  T  F  I  F  L  S  R  K  *  R  F  C  T  C  I  *  R  K  I  Y  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100634" stop="100574"/>
                    <exon start="100491" stop="100274"/>
                    <exon start="98776" stop="98256"/>
                    <exon start="98095" stop="97276"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1617</number_coding_nucleotides>
                  <number_encoded_amino_acids>539</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLMAGGQSPRNLNKPCILLIVIAGMERFSFKGVASNLVTYLTDVAKMSNSAAAKMVNNWCGITSMLPLLVAPLADSYLDRYTTVLASSSLYFAGLLALTSLALQWPWTSLDKSGFSSSLSWSLHLISLGQAGYNPSLQAFAADQLDDEEELPCTKNDQSSKKKSTFFHWWYFGICCGSLLGVSIMSYIQDTLGWGLGFAIPSIAMIVSIVVFRFGNRFYTHNTDGEIIHIKSLGGHIVKAIRAATSRLTCGEIAVPDTNKSKVVEIELENAPLCQQDSGSTEGTDKKPENGIVEILKVVLPLLPVWTMLLMFAVIFQQPATFFTKQGMTMRRNIGSSFRIPPAALQSSITISIILLMPLYDTCFIPFIRVLTRNEKGITVMQRMGIGMFLSVIAMIIAAVTERKRLDIARNVGTLTSEFEALPMSIFWLLPQYILLGISDIFTVVGMQEFFYSEVPINMRTLGIALYTSVFGCGSFFSSFLITVIEHLTSSIGEKQNWFADDMSRARLDNYYWFLALSSAASFMMFMVFCRFYRSRTVN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="107916" PGL_stop="106337"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107916" e_stop="106337"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="107916" e_stop="106337" e_length="1580"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107916" stop="106337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U574416" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAATCATACAAGGTGGTGGGATTATGATTATCTCGGAGGGCCATTTGGTACAGGAGGTCTATTCTTACCCAAAGACAGCATGGGACAAGTCTCCAATTTCCCATAGCACCCGTATATATAACGGTCACAATACCATACAGGAACACATTATTGAGAAGGAGTATCATGTTGAGCTTCTTGGTCATGAACTCAACGACAGGGAATTGATAGTTAGGTACAAGACTGATATTGAAAACAAAAGGATTTTCTATTCTGATCTAAATGGATTCCAAATGAGCCGTAGAGAATCTTATGATAAGATCCCTACACAGGGCAACTATTACCCAATACCTTCCGTTGCATTTATGCAAGGACTACATGGAGAGCGCTTCTCTGTCCACACTAGGCAGTCTTTGGGTGTTGCAAGTCTCAAGGATGGATGGTTAGAGATAATGCTTGACAGGAGATTGGTAAGGGATGATGGACGTGGTCTAGGCCAAGGAGTGATGGATAACCGTGCAATGAATGTTGTTTTACATATCCTTGTGGAGTCTAATGTTACAGAAGCAAACCAAACTACAGGTCCTCATCCTCTAAATCCGTCTCTTCTATCGCATTTGGTTGGTGCCCACCTAAACTATCCTCTTCATGTATTCATTGCCAAGAAATCTGAGGAAATCTCTGTACAGCCACCCCCTAGATCCTTTTCTCCCCTGGCAGCTTCTTTACCATGTGACTTGCATATTGTCAACTTCAAGGTTCCTCGTCCTCTCAAGTATACCCAGCAACAATTTGAAGAGCCTAGGTTTGCCTTAGTCTTTCAGAGACGACACTGGGATTCTTCTTACTGTAGAAAGGCCAGGTCAGAATGTTCAAGTGTAGCTGATGTGCCCGTTAATCTGTTTTACATGTTCAAGAATCTGGCTGTGTTGAATGCAAAGGCTACTTCTTTAAATCTTTTGCATGATGACATAGAGATACTTGGCTATGGCGACCACTTTGGAGATGGAGCTCATGATGGGCATGTCCTCATTTCACCCATGGAGGTACAGGCTTACAAGTTGGAGCTAAGGCCCCACTAGTGAAGGTATAGATCACTTGTATATCCTTTTCCCAACTGAAGCTGAATTAGGGTGTGCTAGTTCAAGGACTACCGCTGCAACTCTGTTTTCCACATTACAACTTCAAGATGTAGTGTATTTTGGAGAGATGAAGGTAGAAATTGTCACAGTTGCGGTTTGCCTAGAGGGTTTTTGACATTGTCAGTTTGAGGCTTGAGGGCTTGAGAATTGTTCTAGCTGTAACCACAGCTACTTCAGAACACTTCCAGAGAAGAAGGTTATGTCACTGAAACTACTGGTGCTAACAGAAGATCTCATCTTATATGAAGGAGAAGTGCTTTGCACATGGTTCTCTTCCAAGAAGATGTTAAAGTAAGTGGGATTTAGAATGGTTAGGTAATATTATAGGCTTAAGTTAAGGTTGTTATTAGAATTTTTGTTACTATTAAGCTAATGATGACACACTGCTAGACAGATTGTATGCAAATGATGAGTCTTTTTGAAACATTTGTTTTTGAAAAAAGATTTTCACGGGATGGA</gDNA_template>
            <first_frame> Q  S  Y  K  V  V  G  L  *  L  S  R  R  A  I  W  Y  R  R  S  I  L  T  Q  R  Q  H  G  T  S  L  Q  F  P  I  A  P  V  Y  I  T  V  T  I  P  Y  R  N  T  L  L  R  R  S  I  M  L  S  F  L  V  M  N  S  T  T  G  N  *  *  L  G  T  R  L  I  L  K  T  K  G  F  S  I  L  I  *  M  D  S  K  *  A  V  E  N  L  M  I  R  S  L  H  R  A  T  I  T  Q  Y  L  P  L  H  L  C  K  D  Y  M  E  S  A  S  L  S  T  L  G  S  L  W  V  L  Q  V  S  R  M  D  G  *  R  *  C  L  T  G  D  W  *  G  M  M  D  V  V  *  A  K  E  *  W  I  T  V  Q  *  M  L  F  Y  I  S  L  W  S  L  M  L  Q  K  Q  T  K  L  Q  V  L  I  L  *  I  R  L  F  Y  R  I  W  L  V  P  T  *  T  I  L  F  M  Y  S  L  P  R  N  L  R  K  S  L  Y  S  H  P  L  D  P  F  L  P  W  Q  L  L  Y  H  V  T  C  I  L  S  T  S  R  F  L  V  L  S  S  I  P  S  N  N  L  K  S  L  G  L  P  *  S  F  R  D  D  T  G  I  L  L  T  V  E  R  P  G  Q  N  V  Q  V  *  L  M  C  P  L  I  C  F  T  C  S  R  I  W  L  C  *  M  Q  R  L  L  L  *  I  F  C  M  M  T  *  R  Y  L  A  M  A  T  T  L  E  M  E  L  M  M  G  M  S  S  F  H  P  W  R  Y  R  L  T  S  W  S  *  G  P  T  S  E  G  I  D  H  L  Y  I  L  F  P  T  E  A  E  L  G  C  A  S  S  R  T  T  A  A  T  L  F  S  T  L  Q  L  Q  D  V  V  Y  F  G  E  M  K  V  E  I  V  T  V  A  V  C  L  E  G  F  *  H  C  Q  F  E  A  *  G  L  E  N  C  S  S  C  N  H  S  Y  F  R  T  L  P  E  K  K  V  M  S  L  K  L  L  V  L  T  E  D  L  I  L  Y  E  G  E  V  L  C  T  W  F  S  S  K  K  M  L  K  *  V  G  F  R  M  V  R  *  Y  Y  R  L  K  L  R  L  L  L  E  F  L  L  L  L  S  *  *  *  H  T  A  R  Q  I  V  C  K  *  *  V  F  L  K  H  L  F  L  K  K  D  F  H  G  M   </first_frame>
            <second_frame>  N  H  T  R  W  W  D  Y  D  Y  L  G  G  P  F  G  T  G  G  L  F  L  P  K  D  S  M  G  Q  V  S  N  F  P  *  H  P  Y  I  *  R  S  Q  Y  H  T  G  T  H  Y  *  E  G  V  S  C  *  A  S  W  S  *  T  Q  R  Q  G  I  D  S  *  V  Q  D  *  Y  *  K  Q  K  D  F  L  F  *  S  K  W  I  P  N  E  P  *  R  I  L  *  *  D  P  Y  T  G  Q  L  L  P  N  T  F  R  C  I  Y  A  R  T  T  W  R  A  L  L  C  P  H  *  A  V  F  G  C  C  K  S  Q  G  W  M  V  R  D  N  A  *  Q  E  I  G  K  G  *  W  T  W  S  R  P  R  S  D  G  *  P  C  N  E  C  C  F  T  Y  P  C  G  V  *  C  Y  R  S  K  P  N  Y  R  S  S  S  S  K  S  V  S  S  I  A  F  G  W  C  P  P  K  L  S  S  S  C  I  H  C  Q  E  I  *  G  N  L  C  T  A  T  P  *  I  L  F  S  P  G  S  F  F  T  M  *  L  A  Y  C  Q  L  Q  G  S  S  S  S  Q  V  Y  P  A  T  I  *  R  A  *  V  C  L  S  L  S  E  T  T  L  G  F  F  L  L  *  K  G  Q  V  R  M  F  K  C  S  *  C  A  R  *  S  V  L  H  V  Q  E  S  G  C  V  E  C  K  G  Y  F  F  K  S  F  A  *  *  H  R  D  T  W  L  W  R  P  L  W  R  W  S  S  *  W  A  C  P  H  F  T  H  G  G  T  G  L  Q  V  G  A  K  A  P  L  V  K  V  *  I  T  C  I  S  F  S  Q  L  K  L  N  *  G  V  L  V  Q  G  L  P  L  Q  L  C  F  P  H  Y  N  F  K  M  *  C  I  L  E  R  *  R  *  K  L  S  Q  L  R  F  A  *  R  V  F  D  I  V  S  L  R  L  E  G  L  R  I  V  L  A  V  T  T  A  T  S  E  H  F  Q  R  R  R  L  C  H  *  N  Y  W  C  *  Q  K  I  S  S  Y  M  K  E  K  C  F  A  H  G  S  L  P  R  R  C  *  S  K  W  D  L  E  W  L  G  N  I  I  G  L  S  *  G  C  Y  *  N  F  C  Y  Y  *  A  N  D  D  T  L  L  D  R  L  Y  A  N  D  E  S  F  *  N  I  C  F  *  K  K  I  F  T  G  W  </second_frame>
            <third_frame>   I  I  Q  G  G  G  I  M  I  I  S  E  G  H  L  V  Q  E  V  Y  S  Y  P  K  T  A  W  D  K  S  P  I  S  H  S  T  R  I  Y  N  G  H  N  T  I  Q  E  H  I  I  E  K  E  Y  H  V  E  L  L  G  H  E  L  N  D  R  E  L  I  V  R  Y  K  T  D  I  E  N  K  R  I  F  Y  S  D  L  N  G  F  Q  M  S  R  R  E  S  Y  D  K  I  P  T  Q  G  N  Y  Y  P  I  P  S  V  A  F  M  Q  G  L  H  G  E  R  F  S  V  H  T  R  Q  S  L  G  V  A  S  L  K  D  G  W  L  E  I  M  L  D  R  R  L  V  R  D  D  G  R  G  L  G  Q  G  V  M  D  N  R  A  M  N  V  V  L  H  I  L  V  E  S  N  V  T  E  A  N  Q  T  T  G  P  H  P  L  N  P  S  L  L  S  H  L  V  G  A  H  L  N  Y  P  L  H  V  F  I  A  K  K  S  E  E  I  S  V  Q  P  P  P  R  S  F  S  P  L  A  A  S  L  P  C  D  L  H  I  V  N  F  K  V  P  R  P  L  K  Y  T  Q  Q  Q  F  E  E  P  R  F  A  L  V  F  Q  R  R  H  W  D  S  S  Y  C  R  K  A  R  S  E  C  S  S  V  A  D  V  P  V  N  L  F  Y  M  F  K  N  L  A  V  L  N  A  K  A  T  S  L  N  L  L  H  D  D  I  E  I  L  G  Y  G  D  H  F  G  D  G  A  H  D  G  H  V  L  I  S  P  M  E  V  Q  A  Y  K  L  E  L  R  P  H  *  *  R  Y  R  S  L  V  Y  P  F  P  N  *  S  *  I  R  V  C  *  F  K  D  Y  R  C  N  S  V  F  H  I  T  T  S  R  C  S  V  F  W  R  D  E  G  R  N  C  H  S  C  G  L  P  R  G  F  L  T  L  S  V  *  G  L  R  A  *  E  L  F  *  L  *  P  Q  L  L  Q  N  T  S  R  E  E  G  Y  V  T  E  T  T  G  A  N  R  R  S  H  L  I  *  R  R  S  A  L  H  M  V  L  F  Q  E  D  V  K  V  S  G  I  *  N  G  *  V  I  L  *  A  *  V  K  V  V  I  R  I  F  V  T  I  K  L  M  M  T  H  C  *  T  D  C  M  Q  M  M  S  L  F  E  T  F  V  F  E  K  R  F  S  R  D  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107914" stop="106856"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1056</number_coding_nucleotides>
                  <number_encoded_amino_acids>352</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIQGGGIMIISEGHLVQEVYSYPKTAWDKSPISHSTRIYNGHNTIQEHIIEKEYHVELLGHELNDRELIVRYKTDIENKRIFYSDLNGFQMSRRESYDKIPTQGNYYPIPSVAFMQGLHGERFSVHTRQSLGVASLKDGWLEIMLDRRLVRDDGRGLGQGVMDNRAMNVVLHILVESNVTEANQTTGPHPLNPSLLSHLVGAHLNYPLHVFIAKKSEEISVQPPPRSFSPLAASLPCDLHIVNFKVPRPLKYTQQQFEEPRFALVFQRRHWDSSYCRKARSECSSVADVPVNLFYMFKNLAVLNAKATSLNLLHDDIEILGYGDHFGDGAHDGHVLISPMEVQAYKLELRPH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="-" PGL_start="111479" PGL_stop="109350"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111479" e_stop="111434"/>
            <exon e_start="111099" e_stop="110950"/>
            <exon e_start="110621" e_stop="110589"/>
            <exon e_start="109585" e_stop="109350"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="111479" e_stop="111434" e_length="46"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="111433" i_stop="111100" i_length="334"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="111099" e_stop="110950" e_length="150"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.982">
            <gDNA_intron_boundary i_start="110949" i_stop="110622" i_length="328"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="110621" e_stop="110589" e_length="33"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.991">
            <gDNA_intron_boundary i_start="110588" i_stop="109586" i_length="1003"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="109585" e_stop="109350" e_length="236"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111479" stop="111434"/>
              <exon start="111099" stop="110950"/>
              <exon start="110621" stop="110589"/>
              <exon start="109585" stop="109350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U575777" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAGTCCAAGCACATCCTAGATACCCTTGTTGAAACACTTCCAAAG : GATTCCCGGAGAAAATTTATATGGGAAGAGATGTCCTATCTGGAGAGATGGTGGAGGGATGCAACCAACGATAAGAAAGAGGCATTTACCAATCTAGTGAGGAATGGGCAGCTAGAAATTGTTGGAGGTGGTTGGGTGATGAATGATGAG : GCTAATTCACATTACTTTGCAATTATTGAACAG : ATTACAGAAGGAAATATGTGGTTGAATGAGACTATAGGTGTAATTCCTAAAAATTCTTGGGCCATTGATCCCTTCGGCTATTCACCAACTATGGCATATCTTTTGCGGCGTATGGGTTTTGAGAACATGCTAATACAGAGGACTCATTATGAGTTGAAGAAGGAACTGGCTTTAAACCAGAATTTGGAATATGTGTGGCGACAGAGCTGGGATGCCGAAGAAAGAACTGATATTTT</gDNA_template>
            <first_frame> T  V  Q  A  H  P  R  Y  P  C  *  N  T  S  K   : G  F  P  E  K  I  Y  M  G  R  D  V  L  S  G  E  M  V  E  G  C  N  Q  R  *  E  R  G  I  Y  Q  S  S  E  E  W  A  A  R  N  C  W  R  W  L  G  D  E  *  *   : G  *  F  T  L  L  C  N  Y  *  T   : D  Y  R  R  K  Y  V  V  E  *  D  Y  R  C  N  S  *  K  F  L  G  H  *  S  L  R  L  F  T  N  Y  G  I  S  F  A  A  Y  G  F  *  E  H  A  N  T  E  D  S  L  *  V  E  E  G  T  G  F  K  P  E  F  G  I  C  V  A  T  E  L  G  C  R  R  K  N  *  Y  F </first_frame>
            <second_frame>  Q  S  K  H  I  L  D  T  L  V  E  T  L  P  K  :  D  S  R  R  K  F  I  W  E  E  M  S  Y  L  E  R  W  W  R  D  A  T  N  D  K  K  E  A  F  T  N  L  V  R  N  G  Q  L  E  I  V  G  G  G  W  V  M  N  D  E  :  A  N  S  H  Y  F  A  I  I  E  Q  :  I  T  E  G  N  M  W  L  N  E  T  I  G  V  I  P  K  N  S  W  A  I  D  P  F  G  Y  S  P  T  M  A  Y  L  L  R  R  M  G  F  E  N  M  L  I  Q  R  T  H  Y  E  L  K  K  E  L  A  L  N  Q  N  L  E  Y  V  W  R  Q  S  W  D  A  E  E  R  T  D  I   </second_frame>
            <third_frame>   S  P  S  T  S  *  I  P  L  L  K  H  F  Q  R :   I  P  G  E  N  L  Y  G  K  R  C  P  I  W  R  D  G  G  G  M  Q  P  T  I  R  K  R  H  L  P  I  *  *  G  M  G  S  *  K  L  L  E  V  V  G  *  *  M  M  R :   L  I  H  I  T  L  Q  L  L  N  R :   L  Q  K  E  I  C  G  *  M  R  L  *  V  *  F  L  K  I  L  G  P  L  I  P  S  A  I  H  Q  L  W  H  I  F  C  G  V  W  V  L  R  T  C  *  Y  R  G  L  I  M  S  *  R  R  N  W  L  *  T  R  I  W  N  M  C  G  D  R  A  G  M  P  K  K  E  L  I  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111478" stop="111434"/>
                    <exon start="111099" stop="110950"/>
                    <exon start="110621" stop="110589"/>
                    <exon start="109585" stop="109352"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>462</number_coding_nucleotides>
                  <number_encoded_amino_acids>154</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSKHILDTLVETLPKDSRRKFIWEEMSYLERWWRDATNDKKEAFTNLVRNGQLEIVGGGWVMNDEANSHYFAIIEQITEGNMWLNETIGVIPKNSWAIDPFGYSPTMAYLLRRMGFENMLIQRTHYELKKELALNQNLEYVWRQSWDAEERTDI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="+" PGL_start="113545" PGL_stop="117039"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113545" e_stop="113655"/>
            <exon e_start="115852" e_stop="117039"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.948" e_score="0.982"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="113545" e_stop="113655" e_length="111"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.948">
            <gDNA_intron_boundary i_start="113656" i_stop="115851" i_length="2196"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="115852" e_stop="117039" e_length="1188"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113545" stop="113655"/>
              <exon start="115852" stop="117039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U569024" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGTAAAAAACACTTAAATTATCAACCCCTCTCTCTCTCTCTCTCCAGCTTCGACGCGAAGAAGCCATTCTCCTCTCTATCGTGTTTGCATCCAGAATTTTTCTGTTACAG : TAGCTGTGAGATATCAGTAGCGGCAACAGAAAATGCCAGCCCAGAAGATTGAAACTGGTCACAATGACACAGTTCACGATGTTACTATGGACTATTATGGAAAACGTGTGGCTACAGCATCTTCTGATACCACCATAAAAATAACTGGTGTGAGCAACAATGCTGCTTCGCAACACCTTGCTACGTTGAGTGGCCATACGGGCCCTGTTTGGCAGGCTGGCTGGGCTCACCCCAAATTTGGCTCAATCCTTGCGTCCTGTTCCTATGATGGTAAGGTAATAATCTGGAAGGAAGGCAATCAGAATGAGTGGGCACAAGCTCATGTTTTTAGCGAGCACAAATCATCGGTTAATTCCATCTCCTGGGCTCCTCATGAACTTGGGCTTTGCTTGGCTTGTGGTTCTTCTGATGGTAATATTTCAGTGCACACCGCCAGGTCAGATGGTGGTTGGGACACTACAAGAATTGACCAAGCTCATCCAGTTGGGGTAACATCAGTTTCATGGGCGCCTTCAATGGCTCCTGGTGCTTTAGTTGGTGCAGGTGTGCTTGAACCTGTTCAAAAGCTGGCATCTGGTGGATGTGATAACACTGTTAAAGTTTGGAAGTTGTATAATGGTGTTTGGAAGATGGATTGCTTCCCTGCACTTCAGATGCACACTAACTGGGTGAGAGATGTAGCTTGGGCACCAAACTTGGGACTTCCAAAGTCAACAATTGCTAGTGCTTCAGAGGATGGTACGGTTGTCATATGGACTGTGGGAAAGGAGGGAGATCAGTGGGAGGGCAAGGTTCTAAAAGACTTCAAATCTCCTGTTTGGAGAGTCTCATGGTCTCTTACCGGAAACTTGTTGGCAGTTGCAGCTGGGGATAACAATGTCACTTTGTGGAAAGAAGCTGTTGATGGGGAGTGGCAACAGGCCTCCACTGTTGACCAATAGAGCTGGAACTTGGGAAGTAATAGAATTCATGTTTTTGTGTTCTCTTTCTACCATTCAGACCTTTTTCCTAGCTGAGGCCTGAGTGAGAGTTAGCCCTTTAATTAAGGACTGTTTACTTTGATTTGATTCTTCTCGTTTACTCAGTATGCATTCAATTTCACTTCAGCTATAGACCTTTTTCTTTCTGCCTGTTTTGTGTATGCCTTTTTATGTTGAATTTTCAATATACTTGGTGATTAAATGTGTC</gDNA_template>
            <first_frame> Q  *  K  T  L  K  L  S  T  P  L  S  L  S  L  Q  L  R  R  E  E  A  I  L  L  S  I  V  F  A  S  R  I  F  L  L  Q  :  *  L  *  D  I  S  S  G  N  R  K  C  Q  P  R  R  L  K  L  V  T  M  T  Q  F  T  M  L  L  W  T  I  M  E  N  V  W  L  Q  H  L  L  I  P  P  *  K  *  L  V  *  A  T  M  L  L  R  N  T  L  L  R  *  V  A  I  R  A  L  F  G  R  L  A  G  L  T  P  N  L  A  Q  S  L  R  P  V  P  M  M  V  R  *  *  S  G  R  K  A  I  R  M  S  G  H  K  L  M  F  L  A  S  T  N  H  R  L  I  P  S  P  G  L  L  M  N  L  G  F  A  W  L  V  V  L  L  M  V  I  F  Q  C  T  P  P  G  Q  M  V  V  G  T  L  Q  E  L  T  K  L  I  Q  L  G  *  H  Q  F  H  G  R  L  Q  W  L  L  V  L  *  L  V  Q  V  C  L  N  L  F  K  S  W  H  L  V  D  V  I  T  L  L  K  F  G  S  C  I  M  V  F  G  R  W  I  A  S  L  H  F  R  C  T  L  T  G  *  E  M  *  L  G  H  Q  T  W  D  F  Q  S  Q  Q  L  L  V  L  Q  R  M  V  R  L  S  Y  G  L  W  E  R  R  E  I  S  G  R  A  R  F  *  K  T  S  N  L  L  F  G  E  S  H  G  L  L  P  E  T  C  W  Q  L  Q  L  G  I  T  M  S  L  C  G  K  K  L  L  M  G  S  G  N  R  P  P  L  L  T  N  R  A  G  T  W  E  V  I  E  F  M  F  L  C  S  L  S  T  I  Q  T  F  F  L  A  E  A  *  V  R  V  S  P  L  I  K  D  C  L  L  *  F  D  S  S  R  L  L  S  M  H  S  I  S  L  Q  L  *  T  F  F  F  L  P  V  L  C  M  P  F  Y  V  E  F  S  I  Y  L  V  I  K  C  V </first_frame>
            <second_frame>  S  K  K  H  L  N  Y  Q  P  L  S  L  S  L  S  S  F  D  A  K  K  P  F  S  S  L  S  C  L  H  P  E  F  F  C  Y  S :   S  C  E  I  S  V  A  A  T  E  N  A  S  P  E  D  *  N  W  S  Q  *  H  S  S  R  C  Y  Y  G  L  L  W  K  T  C  G  Y  S  I  F  *  Y  H  H  K  N  N  W  C  E  Q  Q  C  C  F  A  T  P  C  Y  V  E  W  P  Y  G  P  C  L  A  G  W  L  G  S  P  Q  I  W  L  N  P  C  V  L  F  L  *  W  *  G  N  N  L  E  G  R  Q  S  E  *  V  G  T  S  S  C  F  *  R  A  Q  I  I  G  *  F  H  L  L  G  S  S  *  T  W  A  L  L  G  L  W  F  F  *  W  *  Y  F  S  A  H  R  Q  V  R  W  W  L  G  H  Y  K  N  *  P  S  S  S  S  W  G  N  I  S  F  M  G  A  F  N  G  S  W  C  F  S  W  C  R  C  A  *  T  C  S  K  A  G  I  W  W  M  *  *  H  C  *  S  L  E  V  V  *  W  C  L  E  D  G  L  L  P  C  T  S  D  A  H  *  L  G  E  R  C  S  L  G  T  K  L  G  T  S  K  V  N  N  C  *  C  F  R  G  W  Y  G  C  H  M  D  C  G  K  G  G  R  S  V  G  G  Q  G  S  K  R  L  Q  I  S  C  L  E  S  L  M  V  S  Y  R  K  L  V  G  S  C  S  W  G  *  Q  C  H  F  V  E  R  S  C  *  W  G  V  A  T  G  L  H  C  *  P  I  E  L  E  L  G  K  *  *  N  S  C  F  C  V  L  F  L  P  F  R  P  F  S  *  L  R  P  E  *  E  L  A  L  *  L  R  T  V  Y  F  D  L  I  L  L  V  Y  S  V  C  I  Q  F  H  F  S  Y  R  P  F  S  F  C  L  F  C  V  C  L  F  M  L  N  F  Q  Y  T  W  *  L  N  V   </second_frame>
            <third_frame>   V  K  N  T  *  I  I  N  P  S  L  S  L  S  P  A  S  T  R  R  S  H  S  P  L  Y  R  V  C  I  Q  N  F  S  V  T   : V  A  V  R  Y  Q  *  R  Q  Q  K  M  P  A  Q  K  I  E  T  G  H  N  D  T  V  H  D  V  T  M  D  Y  Y  G  K  R  V  A  T  A  S  S  D  T  T  I  K  I  T  G  V  S  N  N  A  A  S  Q  H  L  A  T  L  S  G  H  T  G  P  V  W  Q  A  G  W  A  H  P  K  F  G  S  I  L  A  S  C  S  Y  D  G  K  V  I  I  W  K  E  G  N  Q  N  E  W  A  Q  A  H  V  F  S  E  H  K  S  S  V  N  S  I  S  W  A  P  H  E  L  G  L  C  L  A  C  G  S  S  D  G  N  I  S  V  H  T  A  R  S  D  G  G  W  D  T  T  R  I  D  Q  A  H  P  V  G  V  T  S  V  S  W  A  P  S  M  A  P  G  A  L  V  G  A  G  V  L  E  P  V  Q  K  L  A  S  G  G  C  D  N  T  V  K  V  W  K  L  Y  N  G  V  W  K  M  D  C  F  P  A  L  Q  M  H  T  N  W  V  R  D  V  A  W  A  P  N  L  G  L  P  K  S  T  I  A  S  A  S  E  D  G  T  V  V  I  W  T  V  G  K  E  G  D  Q  W  E  G  K  V  L  K  D  F  K  S  P  V  W  R  V  S  W  S  L  T  G  N  L  L  A  V  A  A  G  D  N  N  V  T  L  W  K  E  A  V  D  G  E  W  Q  Q  A  S  T  V  D  Q  *  S  W  N  L  G  S  N  R  I  H  V  F  V  F  S  F  Y  H  S  D  L  F  P  S  *  G  L  S  E  S  *  P  F  N  *  G  L  F  T  L  I  *  F  F  S  F  T  Q  Y  A  F  N  F  T  S  A  I  D  L  F  L  S  A  C  F  V  Y  A  F  L  C  *  I  F  N  I  L  G  D  *  M  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115872" stop="116792"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>918</number_coding_nucleotides>
                  <number_encoded_amino_acids>306</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RQQKMPAQKIETGHNDTVHDVTMDYYGKRVATASSDTTIKITGVSNNAASQHLATLSGHTGPVWQAGWAHPKFGSILASCSYDGKVIIWKEGNQNEWAQAHVFSEHKSSVNSISWAPHELGLCLACGSSDGNISVHTARSDGGWDTTRIDQAHPVGVTSVSWAPSMAPGALVGAGVLEPVQKLASGGCDNTVKVWKLYNGVWKMDCFPALQMHTNWVRDVAWAPNLGLPKSTIASASEDGTVVIWTVGKEGDQWEGKVLKDFKSPVWRVSWSLTGNLLAVAAGDNNVTLWKEAVDGEWQQASTVDQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="+" PGL_start="120682" PGL_stop="124180"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="120682" e_stop="120868"/>
            <exon e_start="122480" e_stop="122532"/>
            <exon e_start="122609" e_stop="122679"/>
            <exon e_start="122795" e_stop="122847"/>
            <exon e_start="122919" e_stop="122996"/>
            <exon e_start="123071" e_stop="123127"/>
            <exon e_start="123291" e_stop="123360"/>
            <exon e_start="123513" e_stop="123580"/>
            <exon e_start="123651" e_stop="123723"/>
            <exon e_start="123812" e_stop="123873"/>
            <exon e_start="123967" e_stop="124180"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.979" e_score="0.995"/>
          <exon-intron don_prob="0.964" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.404" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.398" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.928" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.840" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.744" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="120682" e_stop="120868" e_length="187"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.979">
            <gDNA_intron_boundary i_start="120869" i_stop="122479" i_length="1611"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="122480" e_stop="122532" e_length="53"/>
          </exon>
          <intron i_serial="2" don_prob="0.964" acc_prob="0.976">
            <gDNA_intron_boundary i_start="122533" i_stop="122608" i_length="76"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="122609" e_stop="122679" e_length="71"/>
          </exon>
          <intron i_serial="3" don_prob="0.404" acc_prob="0.967">
            <gDNA_intron_boundary i_start="122680" i_stop="122794" i_length="115"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="122795" e_stop="122847" e_length="53"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="0.949">
            <gDNA_intron_boundary i_start="122848" i_stop="122918" i_length="71"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="122919" e_stop="122996" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.398" acc_prob="0.978">
            <gDNA_intron_boundary i_start="122997" i_stop="123070" i_length="74"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="123071" e_stop="123127" e_length="57"/>
          </exon>
          <intron i_serial="6" don_prob="0.928" acc_prob="0.962">
            <gDNA_intron_boundary i_start="123128" i_stop="123290" i_length="163"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="123291" e_stop="123360" e_length="70"/>
          </exon>
          <intron i_serial="7" don_prob="0.980" acc_prob="0.840">
            <gDNA_intron_boundary i_start="123361" i_stop="123512" i_length="152"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="123513" e_stop="123580" e_length="68"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="123581" i_stop="123650" i_length="70"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="123651" e_stop="123723" e_length="73"/>
          </exon>
          <intron i_serial="9" don_prob="0.990" acc_prob="0.971">
            <gDNA_intron_boundary i_start="123724" i_stop="123811" i_length="88"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="123812" e_stop="123873" e_length="62"/>
          </exon>
          <intron i_serial="10" don_prob="0.744" acc_prob="0.994">
            <gDNA_intron_boundary i_start="123874" i_stop="123966" i_length="93"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="123967" e_stop="124180" e_length="214"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120682" stop="120868"/>
              <exon start="122480" stop="122532"/>
              <exon start="122609" stop="122679"/>
              <exon start="122795" stop="122847"/>
              <exon start="122919" stop="122996"/>
              <exon start="123071" stop="123127"/>
              <exon start="123291" stop="123360"/>
              <exon start="123513" stop="123580"/>
              <exon start="123651" stop="123723"/>
              <exon start="123812" stop="123873"/>
              <exon start="123967" stop="124180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U571268" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCTCTTTCTTCAAAGCTTGAGCGGTTTATCTCGAATTTTCCGTAGGGTTCTTCTCTGATCGCTTTCAACTTTCGATAACAGAGAAACCTAGCAATGTCATCGTCACTCCATACTGAAGATTCTCAATGGAAAAACCCTAGCATTTATAGCCGCAAGGACAAATCGCTCGGTCTTCTTTGCTCCAA : GTAGAAATGTGTGGAGGAAGCTGATGATATGCCTTAAAAACATAAAAACCCAA : TTTCTTGAAGCTATGTGATCGGGAAGGGGTGGACTCCACCATTGGTTTGGACAATGCTGCAGATCAATTAG : GTGTCGAGAGGCGTCGCATTTATGATATTGTCAATATTTTGGAAAGTGTTGGG : GTTTTGTCAAGAAAAGCTAAGAATCAGTATAGATGGAATGGGTATAATGCAATTTCTAAGGCTGTAGATTTGCTTAAG : AAAGAAGGACTAAAAGATCTGTCCACTGTCTCCTCCACTTGCCACAATGTTTCAAAT : GTCATAGCTTGTAACAATTCAGATGTTAAGGAAAAAGGAGAAGGCAAGACTGCTGGATCACATAAAATTG : ACAACCGGAAGGAGAAGTCTTTGATGATTCTAGCACAAAATTTTGTAAAGCTTTTCCACTGTTCTGAT : GTTGACTTGATATCTCTTGACAAGGCTGCATCAGCTTTGCTTGGTGATGTCCACGATCCGATGGCTATGAAGA : CAAAGACCAGACGCTTGTATGATATTGCAAATGTTTTTGTGTCCATGAATCTTATTGAGAAG : ATACGCAGCCCAGATAATGGAAAACCAGTGTTTAGGTGGATAGCCTGGAAAGAAAATCTGAGGAGTGGGTCCCTTGCATCTGCTAAATCAGATGATTCAACAAGGAGAACTTTTGGGGCAGAGATCACGAATACAACTCCCAAACGATACAGGGATGATTCTTCATCTGATGTAATGTCAAATGGGCAGGTAAAAAGGTTGAAAGTTGCAAAAG</gDNA_template>
            <first_frame> S  L  F  L  Q  S  L  S  G  L  S  R  I  F  R  R  V  L  L  *  S  L  S  T  F  D  N  R  E  T  *  Q  C  H  R  H  S  I  L  K  I  L  N  G  K  T  L  A  F  I  A  A  R  T  N  R  S  V  F  F  A  P   : S  R  N  V  W  R  K  L  M  I  C  L  K  N  I  K  T  Q  :  F  L  E  A  M  *  S  G  R  G  G  L  H  H  W  F  G  Q  C  C  R  S  I  R :   C  R  E  A  S  H  L  *  Y  C  Q  Y  F  G  K  C  W   : G  F  V  K  K  S  *  E  S  V  *  M  E  W  V  *  C  N  F  *  G  C  R  F  A  *   : E  R  R  T  K  R  S  V  H  C  L  L  H  L  P  Q  C  F  K   : C  H  S  L  *  Q  F  R  C  *  G  K  R  R  R  Q  D  C  W  I  T  *  N  * :   Q  P  E  G  E  V  F  D  D  S  S  T  K  F  C  K  A  F  P  L  F  *   : C  *  L  D  I  S  *  Q  G  C  I  S  F  A  W  *  C  P  R  S  D  G  Y  E  D :   K  D  Q  T  L  V  *  Y  C  K  C  F  C  V  H  E  S  Y  *  E   : D  T  Q  P  R  *  W  K  T  S  V  *  V  D  S  L  E  R  K  S  E  E  W  V  P  C  I  C  *  I  R  *  F  N  K  E  N  F  W  G  R  D  H  E  Y  N  S  Q  T  I  Q  G  *  F  F  I  *  C  N  V  K  W  A  G  K  K  V  E  S  C  K   </first_frame>
            <second_frame>  L  S  F  F  K  A  *  A  V  Y  L  E  F  S  V  G  F  F  S  D  R  F  Q  L  S  I  T  E  K  P  S  N  V  I  V  T  P  Y  *  R  F  S  M  E  K  P  *  H  L  *  P  Q  G  Q  I  A  R  S  S  L  L  Q  :  V  E  M  C  G  G  S  *  *  Y  A  L  K  T  *  K  P  N :   F  L  K  L  C  D  R  E  G  V  D  S  T  I  G  L  D  N  A  A  D  Q  L   : G  V  E  R  R  R  I  Y  D  I  V  N  I  L  E  S  V  G  :  V  L  S  R  K  A  K  N  Q  Y  R  W  N  G  Y  N  A  I  S  K  A  V  D  L  L  K  :  K  E  G  L  K  D  L  S  T  V  S  S  T  C  H  N  V  S  N  :  V  I  A  C  N  N  S  D  V  K  E  K  G  E  G  K  T  A  G  S  H  K  I   : D  N  R  K  E  K  S  L  M  I  L  A  Q  N  F  V  K  L  F  H  C  S  D  :  V  D  L  I  S  L  D  K  A  A  S  A  L  L  G  D  V  H  D  P  M  A  M  K   : T  K  T  R  R  L  Y  D  I  A  N  V  F  V  S  M  N  L  I  E  K  :  I  R  S  P  D  N  G  K  P  V  F  R  W  I  A  W  K  E  N  L  R  S  G  S  L  A  S  A  K  S  D  D  S  T  R  R  T  F  G  A  E  I  T  N  T  T  P  K  R  Y  R  D  D  S  S  S  D  V  M  S  N  G  Q  V  K  R  L  K  V  A  K  </second_frame>
            <third_frame>   S  L  S  S  K  L  E  R  F  I  S  N  F  P  *  G  S  S  L  I  A  F  N  F  R  *  Q  R  N  L  A  M  S  S  S  L  H  T  E  D  S  Q  W  K  N  P  S  I  Y  S  R  K  D  K  S  L  G  L  L  C  S  K :   *  K  C  V  E  E  A  D  D  M  P  *  K  H  K  N  P   : I  S  *  S  Y  V  I  G  K  G  W  T  P  P  L  V  W  T  M  L  Q  I  N  *  :  V  S  R  G  V  A  F  M  I  L  S  I  F  W  K  V  L  G :   F  C  Q  E  K  L  R  I  S  I  D  G  M  G  I  M  Q  F  L  R  L  *  I  C  L  R :   K  K  D  *  K  I  C  P  L  S  P  P  L  A  T  M  F  Q  M :   S  *  L  V  T  I  Q  M  L  R  K  K  E  K  A  R  L  L  D  H  I  K  L  :  T  T  G  R  R  S  L  *  *  F  *  H  K  I  L  *  S  F  S  T  V  L  M :   L  T  *  Y  L  L  T  R  L  H  Q  L  C  L  V  M  S  T  I  R  W  L  *  R  :  Q  R  P  D  A  C  M  I  L  Q  M  F  L  C  P  *  I  L  L  R  R :   Y  A  A  Q  I  M  E  N  Q  C  L  G  G  *  P  G  K  K  I  *  G  V  G  P  L  H  L  L  N  Q  M  I  Q  Q  G  E  L  L  G  Q  R  S  R  I  Q  L  P  N  D  T  G  M  I  L  H  L  M  *  C  Q  M  G  R  *  K  G  *  K  L  Q  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="+"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="122525" stop="122532"/>
                    <exon start="122609" stop="122679"/>
                    <exon start="122795" stop="122847"/>
                    <exon start="122919" stop="122996"/>
                    <exon start="123071" stop="123127"/>
                    <exon start="123291" stop="123360"/>
                    <exon start="123513" stop="123580"/>
                    <exon start="123651" stop="123723"/>
                    <exon start="123812" stop="123873"/>
                    <exon start="123967" stop="124179"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>753</number_coding_nucleotides>
                  <number_encoded_amino_acids>251</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KPNFLKLCDREGVDSTIGLDNAADQLGVERRRIYDIVNILESVGVLSRKAKNQYRWNGYNAISKAVDLLKKEGLKDLSTVSSTCHNVSNVIACNNSDVKEKGEGKTAGSHKIDNRKEKSLMILAQNFVKLFHCSDVDLISLDKAASALLGDVHDPMAMKTKTRRLYDIANVFVSMNLIEKIRSPDNGKPVFRWIAWKENLRSGSLASAKSDDSTRRTFGAEITNTTPKRYRDDSSSDVMSNGQVKRLKVAK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="-" PGL_start="135369" PGL_stop="133503"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="135369" e_stop="135268"/>
            <exon e_start="135079" e_stop="134991"/>
            <exon e_start="133851" e_stop="133503"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="0.990"/>
          <exon-intron don_prob="0.998" acc_prob="0.978" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="135369" e_stop="135268" e_length="102"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="135267" i_stop="135080" i_length="188"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="135079" e_stop="134991" e_length="89"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.978">
            <gDNA_intron_boundary i_start="134990" i_stop="133852" i_length="1139"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="133851" e_stop="133503" e_length="349"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135369" stop="135268"/>
              <exon start="135079" stop="134991"/>
              <exon start="133851" stop="133503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U576939" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCATCATCATCAACAGTCTCAAAAAGATCGTAAAGTTTGCATGTTCTTTCCCCCGTTTTTCTATGGCTTCTTCCACCATTAATCGATGGCTGAGGCCTGAG : GTGTATCCACTTTTTGCAGCCGTAGGCGTTGCTGTAGGGATCTGTGGAATGCAATTGGTTCGTAATATCTGCACCAACCCTGAAGTCAG : GGTGACAAAGGAAAACAGGGCAGCAGGAGTGCTGGATAATTTTTCAGAAGGGGAGAAATATTCAGAGCATGCTCTAAGGAAGTTTGTTCGAAACAAGTCTCCGGAGATTATGCCATCAATCAACGGCTTCTTCAGTAATCCAAACTAATGTCCTAGTCAAGTTTAATTTGGATTAACACCATTATTCTTTGTCTTCTTTTCCATTGAATGAGATAGACATGAAATGCATTTTTCTGGCCCTAAAAGATATTTGAAAGAAACTTGAATAAATGTAATCAGAACCACAAGTTCCCCTCTCTTTTGACAGGGCACATCTTTTCATATGATATTGAACTGTTGTTTTCCGGAT</gDNA_template>
            <first_frame> V  I  I  I  N  S  L  K  K  I  V  K  F  A  C  S  F  P  R  F  S  M  A  S  S  T  I  N  R  W  L  R  P  E  :  V  Y  P  L  F  A  A  V  G  V  A  V  G  I  C  G  M  Q  L  V  R  N  I  C  T  N  P  E  V  R :   V  T  K  E  N  R  A  A  G  V  L  D  N  F  S  E  G  E  K  Y  S  E  H  A  L  R  K  F  V  R  N  K  S  P  E  I  M  P  S  I  N  G  F  F  S  N  P  N  *  C  P  S  Q  V  *  F  G  L  T  P  L  F  F  V  F  F  S  I  E  *  D  R  H  E  M  H  F  S  G  P  K  R  Y  L  K  E  T  *  I  N  V  I  R  T  T  S  S  P  L  F  *  Q  G  T  S  F  H  M  I  L  N  C  C  F  P  D </first_frame>
            <second_frame>  S  S  S  S  T  V  S  K  R  S  *  S  L  H  V  L  S  P  V  F  L  W  L  L  P  P  L  I  D  G  *  G  L  R :   C  I  H  F  L  Q  P  *  A  L  L  *  G  S  V  E  C  N  W  F  V  I  S  A  P  T  L  K  S   : G  *  Q  R  K  T  G  Q  Q  E  C  W  I  I  F  Q  K  G  R  N  I  Q  S  M  L  *  G  S  L  F  E  T  S  L  R  R  L  C  H  Q  S  T  A  S  S  V  I  Q  T  N  V  L  V  K  F  N  L  D  *  H  H  Y  S  L  S  S  F  P  L  N  E  I  D  M  K  C  I  F  L  A  L  K  D  I  *  K  K  L  E  *  M  *  S  E  P  Q  V  P  L  S  F  D  R  A  H  L  F  I  *  Y  *  T  V  V  F  R   </second_frame>
            <third_frame>   H  H  H  Q  Q  S  Q  K  D  R  K  V  C  M  F  F  P  P  F  F  Y  G  F  F  H  H  *  S  M  A  E  A  *   : G  V  S  T  F  C  S  R  R  R  C  C  R  D  L  W  N  A  I  G  S  *  Y  L  H  Q  P  *  S  Q  :  G  D  K  G  K  Q  G  S  R  S  A  G  *  F  F  R  R  G  E  I  F  R  A  C  S  K  E  V  C  S  K  Q  V  S  G  D  Y  A  I  N  Q  R  L  L  Q  *  S  K  L  M  S  *  S  S  L  I  W  I  N  T  I  I  L  C  L  L  F  H  *  M  R  *  T  *  N  A  F  F  W  P  *  K  I  F  E  R  N  L  N  K  C  N  Q  N  H  K  F  P  S  L  L  T  G  H  I  F  S  Y  D  I  E  L  L  F  S  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="-"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="135369" stop="135268"/>
                    <exon start="135079" stop="134991"/>
                    <exon start="133851" stop="133704"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VIIINSLKKIVKFACSFPRFSMASSTINRWLRPEVYPLFAAVGVAVGICGMQLVRNICTNPEVRVTKENRAAGVLDNFSEGEKYSEHALRKFVRNKSPEIMPSINGFFSNPN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="25" PGL_strand="+" PGL_start="140279" PGL_stop="140862"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="140279" e_stop="140862"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="140279" e_stop="140862" e_length="584"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140279" stop="140862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U588350" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGGCGTACGTCCGTTAACTGCCTTATTTCCGGCGTAGACGGCGGCGGTGTTTCGGACGACTTTGTTTCCACCAGGAAATCCGGTTTCGGCAGTGAATTCTCTGTTATTGCCAATATGCTCAAGCGAATTGAACCGTTGGACACTTCTGTTATATCTAAAGGCGTTTCTGATTCAGCTAAGGACTCAATGAAGCAGACCATTTCTACTATGTTAGGCTTGCTCCCTTCAGATCAATTCTCAATCACTGTTCGGTTTTCCAAACACGCTCTCGATCGCCTCATTGTTTCTTCTATCATTACCGGGTACCTTATCTCTTCATTTTCATATATGCACAAAGTTGAAAATAGTGATTGTTAATTTGTTAAAGTTGTGGATCAATCTGAATAAGTTATGGTGTATTCGATTGGTGTTGATTTGTGGTGGTAGGTATACGTTGTGGAATGCGGAGTACAGGATATCCTTGATGAGGAATTTTGATATCCCATCAGATAATTTGAAAGGCTTCAACTCAACGGAAGAGGATGTGAACTCTGGCTCAAAGAGCGAGGGGATAGAGGGGGGAGAACGCGGAGTTGGTGTAAATA</gDNA_template>
            <first_frame> R  R  T  S  V  N  C  L  I  S  G  V  D  G  G  G  V  S  D  D  F  V  S  T  R  K  S  G  F  G  S  E  F  S  V  I  A  N  M  L  K  R  I  E  P  L  D  T  S  V  I  S  K  G  V  S  D  S  A  K  D  S  M  K  Q  T  I  S  T  M  L  G  L  L  P  S  D  Q  F  S  I  T  V  R  F  S  K  H  A  L  D  R  L  I  V  S  S  I  I  T  G  Y  L  I  S  S  F  S  Y  M  H  K  V  E  N  S  D  C  *  F  V  K  V  V  D  Q  S  E  *  V  M  V  Y  S  I  G  V  D  L  W  W  *  V  Y  V  V  E  C  G  V  Q  D  I  L  D  E  E  F  *  Y  P  I  R  *  F  E  R  L  Q  L  N  G  R  G  C  E  L  W  L  K  E  R  G  D  R  G  G  R  T  R  S  W  C  K   </first_frame>
            <second_frame>  G  V  R  P  L  T  A  L  F  P  A  *  T  A  A  V  F  R  T  T  L  F  P  P  G  N  P  V  S  A  V  N  S  L  L  L  P  I  C  S  S  E  L  N  R  W  T  L  L  L  Y  L  K  A  F  L  I  Q  L  R  T  Q  *  S  R  P  F  L  L  C  *  A  C  S  L  Q  I  N  S  Q  S  L  F  G  F  P  N  T  L  S  I  A  S  L  F  L  L  S  L  P  G  T  L  S  L  H  F  H  I  C  T  K  L  K  I  V  I  V  N  L  L  K  L  W  I  N  L  N  K  L  W  C  I  R  L  V  L  I  C  G  G  R  Y  T  L  W  N  A  E  Y  R  I  S  L  M  R  N  F  D  I  P  S  D  N  L  K  G  F  N  S  T  E  E  D  V  N  S  G  S  K  S  E  G  I  E  G  G  E  R  G  V  G  V  N  </second_frame>
            <third_frame>   A  Y  V  R  *  L  P  Y  F  R  R  R  R  R  R  C  F  G  R  L  C  F  H  Q  E  I  R  F  R  Q  *  I  L  C  Y  C  Q  Y  A  Q  A  N  *  T  V  G  H  F  C  Y  I  *  R  R  F  *  F  S  *  G  L  N  E  A  D  H  F  Y  Y  V  R  L  A  P  F  R  S  I  L  N  H  C  S  V  F  Q  T  R  S  R  S  P  H  C  F  F  Y  H  Y  R  V  P  Y  L  F  I  F  I  Y  A  Q  S  *  K  *  *  L  L  I  C  *  S  C  G  S  I  *  I  S  Y  G  V  F  D  W  C  *  F  V  V  V  G  I  R  C  G  M  R  S  T  G  Y  P  *  *  G  I  L  I  S  H  Q  I  I  *  K  A  S  T  Q  R  K  R  M  *  T  L  A  Q  R  A  R  G  *  R  G  E  N  A  E  L  V  *  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="+"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="140493" stop="140861"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>369</number_coding_nucleotides>
                  <number_encoded_amino_acids>123</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ACSLQINSQSLFGFPNTLSIASLFLLSLPGTLSLHFHICTKLKIVIVNLLKLWINLNKLWCIRLVLICGGRYTLWNAEYRISLMRNFDIPSDNLKGFNSTEEDVNSGSKSEGIEGGERGVGVN</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="+"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="140279" stop="140635"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRTSVNCLISGVDGGGVSDDFVSTRKSGFGSEFSVIANMLKRIEPLDTSVISKGVSDSAKDSMKQTISTMLGLLPSDQFSITVRFSKHALDRLIVSSIITGYLISSFSYMHKVENSDC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 65 chains have been computed
$ 
$ memory statistics:
$ 72512 bytes spliced alignments in total
$ 34 spliced alignments have been stored
$ 2132 bytes was the average size of a spliced alignment
$ 36408 bytes predicted gene locations in total
$ 25 predicted gene locations have been stored
$ 1456 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 75 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 10:01:19
-->
