<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 09:56:11"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E295169" ref_strand="+" ref_description="SGN-E295169 [cLET-20-H23]">
      <seq>ttttccggctgcgtgaaggtgtaggtgtggcaactaacaatgttgctgaatacagaggcgtaatcttaggactaagatatgctcttgagaaaggtttcaaacacattaaagtcaagggcgattcgaaacttgtctgcatgcagactcaaggaatctggaaatgcaagaatcagaacatggctgagctatccaagattgttaaagagcttaaagatcagtttatgtctttccagatcaaccacatggacagagaatccaacactgaagccgatgcccaggcaaatttagccgtgtatctcaagaatggcgaaattcaagtggaatgtgacatgataacttaattaagtcaccaactactacctcaacttgttgggatttaggaaatgatgaatgaccgccaagacagaccaatttggatattcagttgtctgaaactacacttgtaacatgtagatatatgatctgaattatgtgcatgtaacctaattatgtatctggattgaaagtagcttctgctgtaacctaatttgcaatgaaaattggttgggacaagtacacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="1602" stop="4625"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1902" g_stop="2044" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2045" i_stop="3423" i_length="1379">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.518" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3424" g_stop="3531" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="251" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3532" i_stop="3948" i_length="417">
            <donor d_prob="0.842" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3949" g_stop="4000" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="303" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4001" i_stop="4069" i_length="69">
            <donor d_prob="0.273" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4070" g_stop="4325" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="559" r_length="256" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E295169" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295169" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1902" e_stop="2044"/>
          <exon e_start="3424" e_stop="3531"/>
          <exon e_start="3949" e_stop="4000"/>
          <exon e_start="4070" e_stop="4325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCGGCTGCGTGAAGGTGTAGGTGTGGCAACTAACAATGTTGCTGAATACAGAGGCGTAATCTTAGGACTAAGATATGCTCTTGAGAAAGGTTTCAAACACATTAAAGTCAAGGGCGATTCGAAACTTGTCTGCATGCAGGTCTTCTTTCTCTACTTCTTACAGCTGTTTTTTTTAGTTTTATTCATTTTTAATTTGCTTTTAGTAAATTAGTCAATTTTTCTGCTTTCTCACTTTAAATATCCTGTCAAATTTGTATATCTTCAGTAATTTATTGAAATCACTGATTTCTAAAACAATTGCTGAAGAGTCTTTTCAATTGAGTGTCAGAGACATATTCATTGAACTGGGCTACACCAACAGAAAGTGGACCGTTCAATATAAGGAGACACATGGTTTTTAACCAACTAGTTTTTGGACATGTACATCCCAAATTAACTAGAATATGATTTTGCATAATCACATAAAATTATTGAAAAATATTTTTGAGTAACAAAACACACATTAATTAAGATTCATGAATGTGATTCTTCATTTGGGACTTCATGGTTGAGCCCCCCTCCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAACCACCATACACACACAAAGATAAATGAATGTGTGTGTATAATTCATTTAATCATAATTCATAGTCATAGCAAAATCAACCGAATGTAACATCAACAATACTTTCAGTTCTATAAAGGTCTCTCCGGCTGCTTTTTAATGCACAATGTTATCATTTTTTTTCTTGTTTTTTCAAGCACTAACCATGTCTTCACCTCAACTTTTTCCTCACGAATTGTAATTCTGCATATCATCTTTTTCCTTTTGATGAGTCAGTTGATTAGGCCAGCTACATAAAAACATGAAATACTATGATAAAAAAGAGAGAGAGATGATCAAAGAAGGCTTTTAAACAGAAATGACAAAACCTAAGCAATATCCACCAAGTTTTGAATTGTGCATCACTGGCCCTCGAGGATTTCTCGGTTATAATTAGAAAATGGCAAAGCTAAGAGCTGTTGTGGCATAAAAGAATGCAGCAGCTGGCTAGCAGTTTGGCAACCCGCATTGTGTTGTGAAAACTTGCTTCTCAATATCCCAATTTGAATCCCGGAGAACATATGGTGTAGGTTAATGATTAATTCAAGAAACTTATTTTACTTGGCTTTTATTTTGGCTTTATTACCAAATGCCTAAGATTTTACAGTGACAGGTTTAGGAGCGACTATAAAGACCCTATAGGATTTGAGACATATTCAGCCTATATGTAATTTGATAGGAATTATGGGATGGCATAGCTTGCCTTCTTGATGGTACCTCATCCTATCCATCCCAAGAGACACCTAAACCAGTTTAAAAGTGAAGCTATTCTTCCCTTGCAACCTATGTGATCTTACGCTGAGATCATATGTGCTTTTGCCGTGCTATTTATATTTTTTTCAGTTTTATGTTTTAGCTGGAACTGCTTCTGGGCCGGTCTCTTGTTTTTACAAATTTCTTCATGGAACAGACTCAAGGAATCTGGAAATGCAAGAATCAGAACATGGCTGAGCTATCCAAGATTGTTAAAGAGCTTAAAGATCAGTTTATGTCTTTCCAGATCAACCACATGGACAGAGTATGGCCAATTTTTCCTCTTTTGCTAATTTGAAGCTCACTGAGCTGGTCTATCAGAATTTTGATTTTCGAAGTCCTTATTATATCTTGCAACTGCATGTTGTTTTTGTGATAAATATGGAGTAGTGTGGTCTCCTGTGACCAAAAGAGGTGCAAGCGGTGGTACCTGGACGTCATGTTTAATTTATGCAATATATATAGTTTCTCTTTTCTTGCTAAGCTGTTCTTCGAAATTGATTTTATCACCTTGTTGCTAGAAGTGAATAATCATGCTTCCCTAGTCAATCAATTCACTCTGTTCTGGTTGCTCTGCATGAACAGTTCAGAATTTTTCTGCACATAATTGTTCCGTTCTTTTTAATCATTTAAAGCCTTTTTTCATCCAATTCCAAGGGTTTTTACTTGTTTAACATATCAGGAATCCAACACTGAAGCCGATGCCCAGGCAAATTTAGCCGTGTATCTCAAGAGTAAGGGTCTTTTGTCTTGTGAGTTTCTCTTTTTCCGTGAGAAATCTAATAAGAAATATTTTGTTGCAGATGGCGAAATTCAAGTGGAATGTGACATGATAACTTAATTAAGTCACCAACTACTACCTCAACTTGTTGGGATTTAGGAAATGATGAATGACCGCCAAGACAGACCAATTTGGATATTCAGTTGTCTGAAACTACACTTGTAACATGTAGATATATGATCTGAATTATGTGCATGTAACCTAATTATGTATCTGGATTGAAAGTAGCTTCTGCTGTAACCTAATTTGCAATGAAAATTGGTTGGGACAAGTACACC</genome_strand>
        <mrna_strand>TTTTCCGGCTGCGTGAAGGTGTAGGTGTGGCAACTAACAATGTTGCTGAATACAGAGGCGTAATCTTAGGACTAAGATATGCTCTTGAGAAAGGTTTCAAACACATTAAAGTCAAGGGCGATTCGAAACTTGTCTGCATGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAAGGAATCTGGAAATGCAAGAATCAGAACATGGCTGAGCTATCCAAGATTGTTAAAGAGCTTAAAGATCAGTTTATGTCTTTCCAGATCAACCACATGGACAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCCAACACTGAAGCCGATGCCCAGGCAAATTTAGCCGTGTATCTCAAGA.....................................................................ATGGCGAAATTCAAGTGGAATGTGACATGATAACTTAATTAAGTCACCAACTACTACCTCAACTTGTTGGGATTTAGGAAATGATGAATGACCGCCAAGACAGACCAATTTGGATATTCAGTTGTCTGAAACTACACTTGTAACATGTAGATATATGATCTGAATTATGTGCATGTAACCTAATTATGTATCTGGATTGAAAGTAGCTTCTGCTGTAACCTAATTTGCAATGAAAATTGGTTGGGACAAGTACACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E701012" ref_strand="+" ref_description="SGN-E701012 [FA14DB07]">
      <seq>ctcttcccaagtcccaactactcccttcactctcttcctctgctcgtggtggagtaacttgcaaagccaagtaaacgcgttggagttggacacataaatgggggacgaaaaggatgctttttatgtcgtgcataaaggggatgtgatcgctgtctataagaacctcagtgatttacaagctctgctacgatcttctgttggtgaaccagctataagtgtttataaagggtatcacctggctaagcaatcagaagagtatttggcatctcatggactcaaaaatgcaatgtattctatggatttcagtgatgttcgagatgatctctttgggatactcgtcccatgcccttttcggcaacctggctcttcgaaagataaaattatggggaagaatcttccggagaagaggatgcagatggaggtggttgcatctccttcgttttcagccgctggtcagcaaaaacatgccacattagacaattgcctagaaattcccccgatttcgtcatattgttgttcatgcattcttgagtttgatggggcttcaaaggggaatcctggaccagctggtgctggtgccgtgctgcgtgctgcagatggaagtatggttttccggttgcgtgaaggtgtgggtgtggcaactaacaacgttgctgaatatagaggtgtaatcttagggctaaaatatgctcttgagaaaggtttcaaacatgtaaaagttaagggtgactcaaaactcgtctgcatgcagactcaaggaatctggaaatgcaagaaccagaacatggctgagctatccaagattgtgaaagagcttaaagatcattttgtatcattccagaatcaccatatttacagagaattcaacactgaagctgatgcccaggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="4438" stop="11851"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4738" g_stop="4783" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4784" i_stop="5073" i_length="290">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5074" g_stop="5223" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="196" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5224" i_stop="5444" i_length="221">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5445" g_stop="5603" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="355" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5604" i_stop="7417" i_length="1814">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7418" g_stop="7477" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="415" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7478" i_stop="8073" i_length="596">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8074" g_stop="8172" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="514" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="8173" i_stop="9490" i_length="1318">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.556" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9491" g_stop="9583" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="607" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="9584" i_stop="9662" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="9663" g_stop="9806" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="751" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="9807" i_stop="10984" i_length="1178">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="10985" g_stop="11092" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="752" r_stop="859" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="11093" i_stop="11521" i_length="429">
            <donor d_prob="0.740" d_score="0.94"/>
            <acceptor a_prob="0.917" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="11522" g_stop="11551" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="860" r_stop="889" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E701012" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>889</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4738" e_stop="4783"/>
          <exon e_start="5074" e_stop="5223"/>
          <exon e_start="5445" e_stop="5603"/>
          <exon e_start="7418" e_stop="7477"/>
          <exon e_start="8074" e_stop="8172"/>
          <exon e_start="9491" e_stop="9583"/>
          <exon e_start="9663" e_stop="9806"/>
          <exon e_start="10985" e_stop="11092"/>
          <exon e_start="11522" e_stop="11551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCCCAAGTCCCAACTACTCCCTTCACTCTCTTCCTCTGCTCGGTAAGAATCTTCATTGTATTCTTTCACTTTTCTATGTTTTCAGAAATCCTAATTCGTTTATCTTTGTGTCTAAAGTACGATTTTTATTCAATACAAAAAAACCCTAATTGAGATGGTAATTGAGTATCATTGCTACTATATTAACTGCAACTGATCATACATGCAGGGTAATATGTATACTGAAAATTGTTCAGTGAGTTTAGAATGTAGTTTTTTTTTTTTCTGGAACTTGGACTTTAAGTATTTGTTTCTGTGTTTTCACTAAGTAATACTGTGTTGTGTTGATACAGTGGTGGAGTAACTTGCAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCTGTACGTTTCCTTTAATGTTTTTTCTGCTTTTGGGCCTTAGACGGCCTTATCTGTTGGACTACTTTTTTTGGAGTCATGTAGAGCTCAAGTATAAGAAGAGTCTAATTATTACAGCTTTTTAACAATGATGAAGAAATAGAGCTTAGTTGATTTGAGCACAAGTAATAATATTATCAGATGCTCTTTTGATGTATTTTCTATTATTTTCTGTGATCTTTCAGGTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGGGTTAGAAAGTTTATCATTTTATTATTATTGAACTGGTGGTAGATGTAGTTGTTTAATCTATTTGACAATTTTGTCTTAACTGTTTAATAATAGCTGGGTCAAATTTTGGTTAATGTGGATGCTAAAATTTGTCCGGCATTTAAGTTTCATACCCATCCTTCTGTTATCATGATCTAGACCCAGTAGTGTGCTGCAACCTTGACTGACTGCATGATTGTTCGCGATCAGGCTGAACTAATCCTTCTCTTGATCTTCCAACTATGTTATCGGCAATTGAGTAGGATCAATTCTCCAATTAGTGACCTTTTACTGGAAACGGAGTGGTAGTGATTACCAGTCGTATCTACTCCATTTAGTGACTAGCAGTTGTATCTACTCCATTTAGTGAGTTTTTATGTCTTTAGGTGTATGTCTTTTGCGTAGCTTTGATATCTTCTTTTGCGTGGCGCTGGTGCTTCCGTGTAGCTCCTTTTTCTAAAGAAAATGGACAAATATTGAATGCAACTGTTATTTACCGCTTTGACATGATATCCATCTCATTTTTCCTCTTTGAAGCACTTTCATCTGATTGTTGAGATAAGAGATAGCTCTTCAGCGCTCTCTATTGTCTTTTCCTTCCAATTTGTCTCATGACACATCATTTTGGCGCTGCAGAAATGGTTTTGAGCTCATGAGATTAATTTTTCCTATGTAGCATAGGTTCTAAATAATAAAGTGCCCTTGTGTTTTGGAAGAGCAAAATATCGCTCCATCTTAGACCATCATAATAGGACAATCATTACTGGAAGAATTACTCTGGGATGATGTGTCTTTATATCTTTGCTTATACAGTTTTTATTGAATTCATAGCTGAGGCCCATATTTGGTAGAGATTCTGATTTTTTTTTTAACTAAAATATATTTAGGTATATAGAAAATAAAATTAATATTGTTTTGCTAGCATTGATTCTTTAATGGTGATTTTTGAATGGATGACACATAAAATTGATGTCATTGGATAATTTTGTACCACCAGCAGATGCATGAGAAAGGAAGTGAATATTTACTTAGATTTGTATGTATTGAAATATAGAAATTGAAAGATGTAGGACTGGAACTGGGAAGAAATCATTTATTTTTGCATTAGATGAATAAATACTGTTTCAAAGCTAAAAAAAACGATGAATACTATTGAAAAGCTTAATGTGAATAAACTGCTGTTTTTTTTAAAAAAATCTTAAGTGTTTTTCCGATTATGTGGTGCGTGGTAGCATTTCAAAGAGAAAATGTCATACATGCCTACTTTTTGTGGCGCATACTTCTTTTTGATAATGCTACTGCCATATGTTATATTGCTTCAAGGCTAATTTGGTTCATGGGTGGAAAGGGGTCATATATGTCTCTGACGCAGAACTGACTACTGTTACTTGTGGTCACACAAACTTGTCAAGTAGCCTTACATATGATATTCTTGGGATCCAATTTGATATCTTTGATAGGTTAATTCACTTGGTTGATTTGTTAGTTTTTCCTCGCTTTGTCATTGCCATGACACTACTTCCTCTATTGTGTCTTGCGACCACTGACTGGTAATTAAAGAGTGCACATAATACTGCTTGTACATTTTTCAGCTATACCTACTTGAAAAACTTAGATGTTTTAACATTCAATTATTGATATGTTTGTTCCCGTTTGCTCTGTCAAATTCAGCAGTCTATGGTTTATAATTGTGCCTTGAAGAAAACCAAACTTTCAGCATGTTTTCTAGTAACAATTTTACATTAAAGACGATATCATGCATGCTGATTTTTCATTTTTTTTTTCTGTTTTTGTAGCAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAGGTAATTTCTTAATGGTCAATCCAGATTATTCTTACATTGATAGGATGGGGTATGTCTTTCTTGAAAGGTTCATAACAGTTATACTTTCTTTATGCCCAACTTCAGTCATCAAAAAAACTATATCATCAGTTACTACAATGCCCTAACATGTTGTGAAGTAGGATGGCATGGAAATTTCGGATGGTGTTTATTATTAGGCTTGTGCTTTTCCTGGAATAAGAAACTAATTGTCTGGTCTAGGGATGGCGGTTTCCTCTATAGCTCTTGAAGTAAAATGAGGATACTCATCTAGTGGTGGTATAAATGTCAAGGATAAGCCTGTTTGCTGCATGTAGTTGCTCTAATAACGAAGTTGTGCTTCACATTTATAGTTTCTAGTATAAAACTGATTTATTGTCCTAAGAACTCAATTTTGTCGATGGTTCAACTCACAGGTTTTAGTTAATCTTGTCTCGCCTTATGATAATTTGTTCGGTCCTCTATTTTGTTTAATATACTTTTCTAATTTAATTGAGTCAGCATGTGAAAGTCTTCCTATTATGAAAAGGTGTGTGTAGTGTATTTGATATTCACATGATTATTTTTCTTACATTCAGATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGTGTAAGTATATTATTTTACCTAACAATTCTTTGTATCAATACGTTTAAATTCTTGTCATTGTCTGCTTTATCTGGATGTTGACATTCTTGGGGTGGGGTGAGGGTGGTGATTTGGTGGGTGGTTAGCCTTGGAAAGGGCTTGCTCCTATGTTTTGACTTTATTCTGCTGCTGGCCGAAACTAGTGAGGATAGTGATGCGTATTGGAGCTGATTTGGAAAATAAAAGGTTGAGAAGTCCTGATTCGGCAACCACTGATCCAAGGGGGACCAAGTGATTCTTAAATCAAACTGTAAGGGCAAAGTGGAACATTGTTGGTTAACGTTGCGCAAAAGTCCAAAGTTGGAAGATGGTGACAAAATTTATATGTAATCTATGTTGCTGGGATTCTCCAAGAAATAGTGCTGCACCCATGCTAGATCCTCCAAAATGCACTACTTTTGAAGGATTCGACATGCTCTCATCAACATTTTAGAGTCCGAGCAACATAACTTGTATTAAGTTTATTTTAGAATGTAAGGGGTCGTTTGGTACAAAAATTAATGACACACTGATTAGTAATGCAAGGATTACTAATGCAGGGGTAAGTAGGGGTTAGTAGTGCAGGAATATGTAATGCAGGGTTTACTTTTACCAAATGTTTGGCTCATTGTTTCCTACCCCATCTTGTGTTTGGATTAAAACTCTATAAGAAGTTTTTTTCCAATTATACCCTTGAATTATTATGCAATTGGGTCAAGAAAGATAATTCCCTGCAGTCTTTTGTAACTTCTGGTTTTGGTACCTTTTTGGTACTTTAGGCAATAAACCTTTACCTTATAAACAAAAAAAAAATATTTTTCTATGGCTCCCTAACTTGCTAGGGGTTGAACAATTTTGTTGTCATGTTTGCTATTTTTTCTCTTGAATTATTTAAGGATAACTAGTTGTCATATTAATGAATTGATCACTCACAAAATGTCAATTTTCAATTTAAAAAAGATAAACCCCATCTACTTTTAAAACGAAAAGACGGTAAACAATAAGAAAATTAAATAAATCATCTACATTTATATATATATATATATATATATATATATATATACACACACACACACACATAGATGATTGAAGAAACAGCGTAAAAGAATCTATTTGGACTTTGTTCTTATGTGCTAAAAAAAGAAAAAAAGGTTCCCGTTAAACTTATCTTTTGAGACATTTTGTAGTGTATCGGCACTTCAGTTCCAAGTCGATATCATTCTACTATCTGTATGTGATCTTTGCTTCTAACTTGGAGGAACATTTTGTAACTTGATACCTTCAGCCCCCCTACATACAGTGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCTGCAGATGGAAGTATGGTATGCTCCCTTTCCATTTAGGAGATGTGGTTTGTCACCATAAATTTACAGGTTTTCGACTTGTAGTTCTTTTCTGTAGGTTTTCCGGTTGCGTGAAGGTGTGGGTGTGGCAACTAACAACGTTGCTGAATATAGAGGTGTAATCTTAGGGCTAAAATATGCTCTTGAGAAAGGTTTCAAACATGTAAAAGTTAAGGGTGACTCAAAACTCGTCTGCATGCAGGTCTTCTTTACTCTTCTTACTTCTGTTTTTGTTTTATCTTGATCTTCCCTTAAGCAAATTAGTCAATTATTTCTGCTTTTCCACTTTTAATATCCTGTCAGATTTATATATTCCAGTAACTTGTTGAAACAACTGAGTTCTAAAGCAATTGCTGAAGAACTTTTTCCGCTGATGTCCTAGCAATTAAGAGTGTCTGAGACATACTTATAAACCCCAGGCTACACAAAGATGCCCCAGAAAGTAGACCATTCCAAATAATGATAAAGTTGATCTCTGTTTATGGACTATGGTATTAAGTATTATCATCTTAAGTCATCCCTAGTTAGCCTGGGATGGAATAGCCGAAGTATTATCTTTAGTGTATACTCCACAGGTTGTATATGTATACTCCAAAATCACACAGTGGAATCCACACTGTGGATAACATGACTGGGTATGTTAGGGAGTACTAGATAGTTTAGAAGTGCACTCGAATAAGGTGAACTACAAAAACTAATTTGAGTTTATTATTATGTAATTCTGCATATAACTTTTTTCTTTTTATGAGGCAAAGTCGGTTCAGCTACATAAATCTAGAAATCAATTAATACTATATTACATTCAACACTTGACAGTGTTTTAAGAAAAGAAGAGAGAGAAATGATCCAAGGAAGCTTTTAAAAAGAAATGGGAAAAGCTAAGCATTATCCACCAAGTTTTGAATTGTGTCTCATTGATCCTCGGGGATTTCTGTTATATTAAAAAATGACAGAGCTAAGAGATGATGTGGCATAGAAGAATGAGCAGCAGTAGGCAAGCAGTTTGGATCCCCACATTGTCTTCGGAAAAATTGCTTCTGTTCATCCCAAAGTGAGCTGGAGAATAAAGGTATAGGTTAATTTGATTGTTTTGCAGAATGCCTAAGAGATTTTGCAGTGACAGATCTGGGAATGAGTATAAAAACCTTATATGATTCGGTATAAGCTTCCTTCTTGATGGCACCTTGCCCCTTCCATTCTAAGAGACACCCAAACCAGTTCAAAAGTGTAGCTATTCTTGCCCTTGTAACCTGTGTGACCTTATTCTGGGATCATGTGTTCTTGCGGTGCTATTTATATTGCATTAAGTATTAAGTTATTGCTGGAACTGCTTCAGGGATGATCTCTCATTCTTTAATTTTTTTTTTAATCATGGAACAGACTCAAGGAATCTGGAAATGCAAGAACCAGAACATGGCTGAGCTATCCAAGATTGTGAAAGAGCTTAAAGATCATTTTGTATCATTCCAGATCAACCATATTTACAGAGTATGGCCAACTTTCTCCTCTTTTGCTAATTCAGAGCTTACTGAGCCTGTCTATCAGAATTTTGATCTTTGAAGTCCTTATTATATCTTGCATCTGCATCTTATTTCTGTGGTGAAAATGCTATAGTGTGTGTTATGTGTGGTCTCCTGTGACCAGAAAAGGTGCAAGTGGTGGGTGCTTGAATGTCATGTTTAATTTATGCAACAATGAGTTTCATCCATCTTGCTTATGAGCTCTATGAAATTGGTTTCATCACCTTGTTGCTAGAAGTGAATAGTCATGTTTGTCCGGTCTATTAATTCACTTAGTTTCGCATTTCTCTTCGTGAAACGTTTAAACTAAACTTGTACATATGTACTAAACTCATGATTGTTTAAAAAGCCATCTTCTCATCTCATTCTGAGGGGTTTTACTTGTTTGACATATCAGGAATTCAACACTGAAGCTGATGCCCAGGCA</genome_strand>
        <mrna_strand>CTCTTCCCAAGTCCCAACTACTCCCTTCACTCTCTTCCTCTGCTCG..................................................................................................................................................................................................................................................................................................TGGTGGAGTAACTTGCAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCT.............................................................................................................................................................................................................................GTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCTGCAGATGGAAGTATG...............................................................................GTTTTCCGGTTGCGTGAAGGTGTGGGTGTGGCAACTAACAACGTTGCTGAATATAGAGGTGTAATCTTAGGGCTAAAATATGCTCTTGAGAAAGGTTTCAAACATGTAAAAGTTAAGGGTGACTCAAAACTCGTCTGCATGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAAGGAATCTGGAAATGCAAGAACCAGAACATGGCTGAGCTATCCAAGATTGTGAAAGAGCTTAAAGATCATTTTGTATCATTCCAGAATCACCATATTTACAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTCAACACTGAAGCTGATGCCCAGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731784" ref_strand="+" ref_description="SGN-E731784 [LA28AG03]">
      <seq>caagtcccaactactcccttcactctcttcctctgctcgtggtggagtaacttgcaaagccaagtaaacgcgttggagttggacacataaatgggggacgaaaaggatgctttttatgtcgtgcataaaggggatgtgatcgctgtctataagaacctcagtgatttacaagctctgctacgatcttctgttggtgaaccagctataagtgtttataaagggtatcacctggctaagcaatcagaagagtatttggcatctcatggactcaaaaatgcaatgtattctatggatttcagtgatgttcgagatgatctctttgggatactcgtcccatgcccttttcggcaacctggctcttcgaaagataaaattatggggaagaatcttccggagaagaggatgcagatggaggtggttgcatctccttcgttttcagccgctggtcagcaaaaacatgccacattagacaattgcctagaaattcccccgatttcgtcatattgtcccccctacatacagtgttcatgcattcttgagtttgatggggcttcaaaggggaatcctggaccagctggtgctggtgccgtgctgcgtgctgcagatggaagtatggttttccggttgcgtgaaggtgtgggtgtggcaactaacaacgttgctgaatatagaggtgtaatcttagggctaaaatatgctcttgagaaaggtttncaacatgtaaaagttaagggtgactcaaaactcgtctgcatgcagactcaaggaatctggaaatgcaagaaccagaacatggctgagctatccaagattgtgaaagagcttaaagatcattttgtatctttccaaatcacccatatttacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="4445" stop="11391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4745" g_stop="4783" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4784" i_stop="5073" i_length="290">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5074" g_stop="5223" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="189" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5224" i_stop="5444" i_length="221">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5445" g_stop="5603" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="348" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5604" i_stop="7417" i_length="1814">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7418" g_stop="7477" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="408" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7478" i_stop="8073" i_length="596">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8074" g_stop="8172" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="507" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="8173" i_stop="9475" i_length="1303">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9476" g_stop="9583" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="615" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="9584" i_stop="9662" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="9663" g_stop="9806" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="759" r_length="144" r_score="0.986"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="9807" i_stop="10984" i_length="1178">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="10985" g_stop="11091" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="760" r_stop="866" r_length="107" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E731784" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4745" e_stop="4783"/>
          <exon e_start="5074" e_stop="5223"/>
          <exon e_start="5445" e_stop="5603"/>
          <exon e_start="7418" e_stop="7477"/>
          <exon e_start="8074" e_stop="8172"/>
          <exon e_start="9476" e_stop="9583"/>
          <exon e_start="9663" e_stop="9806"/>
          <exon e_start="10985" e_stop="11091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTCCCAACTACTCCCTTCACTCTCTTCCTCTGCTCGGTAAGAATCTTCATTGTATTCTTTCACTTTTCTATGTTTTCAGAAATCCTAATTCGTTTATCTTTGTGTCTAAAGTACGATTTTTATTCAATACAAAAAAACCCTAATTGAGATGGTAATTGAGTATCATTGCTACTATATTAACTGCAACTGATCATACATGCAGGGTAATATGTATACTGAAAATTGTTCAGTGAGTTTAGAATGTAGTTTTTTTTTTTTCTGGAACTTGGACTTTAAGTATTTGTTTCTGTGTTTTCACTAAGTAATACTGTGTTGTGTTGATACAGTGGTGGAGTAACTTGCAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCTGTACGTTTCCTTTAATGTTTTTTCTGCTTTTGGGCCTTAGACGGCCTTATCTGTTGGACTACTTTTTTTGGAGTCATGTAGAGCTCAAGTATAAGAAGAGTCTAATTATTACAGCTTTTTAACAATGATGAAGAAATAGAGCTTAGTTGATTTGAGCACAAGTAATAATATTATCAGATGCTCTTTTGATGTATTTTCTATTATTTTCTGTGATCTTTCAGGTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGGGTTAGAAAGTTTATCATTTTATTATTATTGAACTGGTGGTAGATGTAGTTGTTTAATCTATTTGACAATTTTGTCTTAACTGTTTAATAATAGCTGGGTCAAATTTTGGTTAATGTGGATGCTAAAATTTGTCCGGCATTTAAGTTTCATACCCATCCTTCTGTTATCATGATCTAGACCCAGTAGTGTGCTGCAACCTTGACTGACTGCATGATTGTTCGCGATCAGGCTGAACTAATCCTTCTCTTGATCTTCCAACTATGTTATCGGCAATTGAGTAGGATCAATTCTCCAATTAGTGACCTTTTACTGGAAACGGAGTGGTAGTGATTACCAGTCGTATCTACTCCATTTAGTGACTAGCAGTTGTATCTACTCCATTTAGTGAGTTTTTATGTCTTTAGGTGTATGTCTTTTGCGTAGCTTTGATATCTTCTTTTGCGTGGCGCTGGTGCTTCCGTGTAGCTCCTTTTTCTAAAGAAAATGGACAAATATTGAATGCAACTGTTATTTACCGCTTTGACATGATATCCATCTCATTTTTCCTCTTTGAAGCACTTTCATCTGATTGTTGAGATAAGAGATAGCTCTTCAGCGCTCTCTATTGTCTTTTCCTTCCAATTTGTCTCATGACACATCATTTTGGCGCTGCAGAAATGGTTTTGAGCTCATGAGATTAATTTTTCCTATGTAGCATAGGTTCTAAATAATAAAGTGCCCTTGTGTTTTGGAAGAGCAAAATATCGCTCCATCTTAGACCATCATAATAGGACAATCATTACTGGAAGAATTACTCTGGGATGATGTGTCTTTATATCTTTGCTTATACAGTTTTTATTGAATTCATAGCTGAGGCCCATATTTGGTAGAGATTCTGATTTTTTTTTTAACTAAAATATATTTAGGTATATAGAAAATAAAATTAATATTGTTTTGCTAGCATTGATTCTTTAATGGTGATTTTTGAATGGATGACACATAAAATTGATGTCATTGGATAATTTTGTACCACCAGCAGATGCATGAGAAAGGAAGTGAATATTTACTTAGATTTGTATGTATTGAAATATAGAAATTGAAAGATGTAGGACTGGAACTGGGAAGAAATCATTTATTTTTGCATTAGATGAATAAATACTGTTTCAAAGCTAAAAAAAACGATGAATACTATTGAAAAGCTTAATGTGAATAAACTGCTGTTTTTTTTAAAAAAATCTTAAGTGTTTTTCCGATTATGTGGTGCGTGGTAGCATTTCAAAGAGAAAATGTCATACATGCCTACTTTTTGTGGCGCATACTTCTTTTTGATAATGCTACTGCCATATGTTATATTGCTTCAAGGCTAATTTGGTTCATGGGTGGAAAGGGGTCATATATGTCTCTGACGCAGAACTGACTACTGTTACTTGTGGTCACACAAACTTGTCAAGTAGCCTTACATATGATATTCTTGGGATCCAATTTGATATCTTTGATAGGTTAATTCACTTGGTTGATTTGTTAGTTTTTCCTCGCTTTGTCATTGCCATGACACTACTTCCTCTATTGTGTCTTGCGACCACTGACTGGTAATTAAAGAGTGCACATAATACTGCTTGTACATTTTTCAGCTATACCTACTTGAAAAACTTAGATGTTTTAACATTCAATTATTGATATGTTTGTTCCCGTTTGCTCTGTCAAATTCAGCAGTCTATGGTTTATAATTGTGCCTTGAAGAAAACCAAACTTTCAGCATGTTTTCTAGTAACAATTTTACATTAAAGACGATATCATGCATGCTGATTTTTCATTTTTTTTTTCTGTTTTTGTAGCAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAGGTAATTTCTTAATGGTCAATCCAGATTATTCTTACATTGATAGGATGGGGTATGTCTTTCTTGAAAGGTTCATAACAGTTATACTTTCTTTATGCCCAACTTCAGTCATCAAAAAAACTATATCATCAGTTACTACAATGCCCTAACATGTTGTGAAGTAGGATGGCATGGAAATTTCGGATGGTGTTTATTATTAGGCTTGTGCTTTTCCTGGAATAAGAAACTAATTGTCTGGTCTAGGGATGGCGGTTTCCTCTATAGCTCTTGAAGTAAAATGAGGATACTCATCTAGTGGTGGTATAAATGTCAAGGATAAGCCTGTTTGCTGCATGTAGTTGCTCTAATAACGAAGTTGTGCTTCACATTTATAGTTTCTAGTATAAAACTGATTTATTGTCCTAAGAACTCAATTTTGTCGATGGTTCAACTCACAGGTTTTAGTTAATCTTGTCTCGCCTTATGATAATTTGTTCGGTCCTCTATTTTGTTTAATATACTTTTCTAATTTAATTGAGTCAGCATGTGAAAGTCTTCCTATTATGAAAAGGTGTGTGTAGTGTATTTGATATTCACATGATTATTTTTCTTACATTCAGATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGTGTAAGTATATTATTTTACCTAACAATTCTTTGTATCAATACGTTTAAATTCTTGTCATTGTCTGCTTTATCTGGATGTTGACATTCTTGGGGTGGGGTGAGGGTGGTGATTTGGTGGGTGGTTAGCCTTGGAAAGGGCTTGCTCCTATGTTTTGACTTTATTCTGCTGCTGGCCGAAACTAGTGAGGATAGTGATGCGTATTGGAGCTGATTTGGAAAATAAAAGGTTGAGAAGTCCTGATTCGGCAACCACTGATCCAAGGGGGACCAAGTGATTCTTAAATCAAACTGTAAGGGCAAAGTGGAACATTGTTGGTTAACGTTGCGCAAAAGTCCAAAGTTGGAAGATGGTGACAAAATTTATATGTAATCTATGTTGCTGGGATTCTCCAAGAAATAGTGCTGCACCCATGCTAGATCCTCCAAAATGCACTACTTTTGAAGGATTCGACATGCTCTCATCAACATTTTAGAGTCCGAGCAACATAACTTGTATTAAGTTTATTTTAGAATGTAAGGGGTCGTTTGGTACAAAAATTAATGACACACTGATTAGTAATGCAAGGATTACTAATGCAGGGGTAAGTAGGGGTTAGTAGTGCAGGAATATGTAATGCAGGGTTTACTTTTACCAAATGTTTGGCTCATTGTTTCCTACCCCATCTTGTGTTTGGATTAAAACTCTATAAGAAGTTTTTTTCCAATTATACCCTTGAATTATTATGCAATTGGGTCAAGAAAGATAATTCCCTGCAGTCTTTTGTAACTTCTGGTTTTGGTACCTTTTTGGTACTTTAGGCAATAAACCTTTACCTTATAAACAAAAAAAAAATATTTTTCTATGGCTCCCTAACTTGCTAGGGGTTGAACAATTTTGTTGTCATGTTTGCTATTTTTTCTCTTGAATTATTTAAGGATAACTAGTTGTCATATTAATGAATTGATCACTCACAAAATGTCAATTTTCAATTTAAAAAAGATAAACCCCATCTACTTTTAAAACGAAAAGACGGTAAACAATAAGAAAATTAAATAAATCATCTACATTTATATATATATATATATATATATATATATATATACACACACACACACACATAGATGATTGAAGAAACAGCGTAAAAGAATCTATTTGGACTTTGTTCTTATGTGCTAAAAAAAGAAAAAAAGGTTCCCGTTAAACTTATCTTTTGAGACATTTTGTAGTGTATCGGCACTTCAGTTCCAAGTCGATATCATTCTACTATCTGTATGTGATCTTTGCTTCTAACTTGGAGGAACATTTTGTAACTTGATACCTTCAGCCCCCCTACATACAGTGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCTGCAGATGGAAGTATGGTATGCTCCCTTTCCATTTAGGAGATGTGGTTTGTCACCATAAATTTACAGGTTTTCGACTTGTAGTTCTTTTCTGTAGGTTTTCCGGTTGCGTGAAGGTGTGGGTGTGGCAACTAACAACGTTGCTGAATATAGAGGTGTAATCTTAGGGCTAAAATATGCTCTTGAGAAAGGTTTCAAACATGTAAAAGTTAAGGGTGACTCAAAACTCGTCTGCATGCAGGTCTTCTTTACTCTTCTTACTTCTGTTTTTGTTTTATCTTGATCTTCCCTTAAGCAAATTAGTCAATTATTTCTGCTTTTCCACTTTTAATATCCTGTCAGATTTATATATTCCAGTAACTTGTTGAAACAACTGAGTTCTAAAGCAATTGCTGAAGAACTTTTTCCGCTGATGTCCTAGCAATTAAGAGTGTCTGAGACATACTTATAAACCCCAGGCTACACAAAGATGCCCCAGAAAGTAGACCATTCCAAATAATGATAAAGTTGATCTCTGTTTATGGACTATGGTATTAAGTATTATCATCTTAAGTCATCCCTAGTTAGCCTGGGATGGAATAGCCGAAGTATTATCTTTAGTGTATACTCCACAGGTTGTATATGTATACTCCAAAATCACACAGTGGAATCCACACTGTGGATAACATGACTGGGTATGTTAGGGAGTACTAGATAGTTTAGAAGTGCACTCGAATAAGGTGAACTACAAAAACTAATTTGAGTTTATTATTATGTAATTCTGCATATAACTTTTTTCTTTTTATGAGGCAAAGTCGGTTCAGCTACATAAATCTAGAAATCAATTAATACTATATTACATTCAACACTTGACAGTGTTTTAAGAAAAGAAGAGAGAGAAATGATCCAAGGAAGCTTTTAAAAAGAAATGGGAAAAGCTAAGCATTATCCACCAAGTTTTGAATTGTGTCTCATTGATCCTCGGGGATTTCTGTTATATTAAAAAATGACAGAGCTAAGAGATGATGTGGCATAGAAGAATGAGCAGCAGTAGGCAAGCAGTTTGGATCCCCACATTGTCTTCGGAAAAATTGCTTCTGTTCATCCCAAAGTGAGCTGGAGAATAAAGGTATAGGTTAATTTGATTGTTTTGCAGAATGCCTAAGAGATTTTGCAGTGACAGATCTGGGAATGAGTATAAAAACCTTATATGATTCGGTATAAGCTTCCTTCTTGATGGCACCTTGCCCCTTCCATTCTAAGAGACACCCAAACCAGTTCAAAAGTGTAGCTATTCTTGCCCTTGTAACCTGTGTGACCTTATTCTGGGATCATGTGTTCTTGCGGTGCTATTTATATTGCATTAAGTATTAAGTTATTGCTGGAACTGCTTCAGGGATGATCTCTCATTCTTTAATTTTTTTTTTAATCATGGAACAGACTCAAGGAATCTGGAAATGCAAGAACCAGAACATGGCTGAGCTATCCAAGATTGTGAAAGAGCTTAAAGATCATTTTGTATCATTCCAGATCAACCATATTTACAG</genome_strand>
        <mrna_strand>CAAGTCCCAACTACTCCCTTCACTCTCTTCCTCTGCTCG..................................................................................................................................................................................................................................................................................................TGGTGGAGTAACTTGCAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCT.............................................................................................................................................................................................................................GTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCCTACATACAGTGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCTGCAGATGGAAGTATG...............................................................................GTTTTCCGGTTGCGTGAAGGTGTGGGTGTGGCAACTAACAACGTTGCTGAATATAGAGGTGTAATCTTAGGGCTAAAATATGCTCTTGAGAAAGGTTTNCAACATGTAAAAGTTAAGGGTGACTCAAAACTCGTCTGCATGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAAGGAATCTGGAAATGCAAGAACCAGAACATGGCTGAGCTATCCAAGATTGTGAAAGAGCTTAAAGATCATTTTGTATCTTTCCAAATCACCCATATTTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E391743" ref_strand="+" ref_description="SGN-E391743 [TUS-24-E14]">
      <seq>cccaactactcccttcactctcttcctctgctcgtggtggagtaacttgcaaagccaagtaaacgcgttggagttggacacataaatgggggacgaaaaggatgctttttatgtcgtgcataaaggggatgtgatcgctgtctataagaacctcagtgatttacaagctctgctacgatcttctgttggtgaaccagctataagtgtttataaagggtatcacctggctaagcaatcagaagagtatttggcatctcatggactcaaaaatgcaatgtattctatggatttcagtgatgttcgagatgatctctttgggatactcgtcccatgcccttttcggcaacctggctcttcgaaagataaaattatggggaagaatcttccggagaagaggatgcagatggaggtggttgcatctccttcgttttcagccgctggtcagcaaaaacatgccacattagacaattgcctagaaattcccccgatttcgtcatattgtcccccctacatacagtgttcatgcattcttgagtttgatggggcttcaaaggggaatcctggaccagctggtgctggtgccgtgctgcgtgctgcaaatggaaatatggttttccggttgcgtgaaggtggtgggtgtggcaactaacaacgttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="4450" stop="10009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4750" g_stop="4783" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4784" i_stop="5073" i_length="290">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5074" g_stop="5223" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="184" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5224" i_stop="5444" i_length="221">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5445" g_stop="5603" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="343" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5604" i_stop="7417" i_length="1814">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7418" g_stop="7477" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="403" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7478" i_stop="8073" i_length="596">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8074" g_stop="8172" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="502" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="8173" i_stop="9475" i_length="1303">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9476" g_stop="9583" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="610" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="9584" i_stop="9662" i_length="79">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="9663" g_stop="9709" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="658" r_length="48" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E391743" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4750" e_stop="4783"/>
          <exon e_start="5074" e_stop="5223"/>
          <exon e_start="5445" e_stop="5603"/>
          <exon e_start="7418" e_stop="7477"/>
          <exon e_start="8074" e_stop="8172"/>
          <exon e_start="9476" e_stop="9583"/>
          <exon e_start="9663" e_stop="9709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAACTACTCCCTTCACTCTCTTCCTCTGCTCGGTAAGAATCTTCATTGTATTCTTTCACTTTTCTATGTTTTCAGAAATCCTAATTCGTTTATCTTTGTGTCTAAAGTACGATTTTTATTCAATACAAAAAAACCCTAATTGAGATGGTAATTGAGTATCATTGCTACTATATTAACTGCAACTGATCATACATGCAGGGTAATATGTATACTGAAAATTGTTCAGTGAGTTTAGAATGTAGTTTTTTTTTTTTCTGGAACTTGGACTTTAAGTATTTGTTTCTGTGTTTTCACTAAGTAATACTGTGTTGTGTTGATACAGTGGTGGAGTAACTTGCAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCTGTACGTTTCCTTTAATGTTTTTTCTGCTTTTGGGCCTTAGACGGCCTTATCTGTTGGACTACTTTTTTTGGAGTCATGTAGAGCTCAAGTATAAGAAGAGTCTAATTATTACAGCTTTTTAACAATGATGAAGAAATAGAGCTTAGTTGATTTGAGCACAAGTAATAATATTATCAGATGCTCTTTTGATGTATTTTCTATTATTTTCTGTGATCTTTCAGGTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGGGTTAGAAAGTTTATCATTTTATTATTATTGAACTGGTGGTAGATGTAGTTGTTTAATCTATTTGACAATTTTGTCTTAACTGTTTAATAATAGCTGGGTCAAATTTTGGTTAATGTGGATGCTAAAATTTGTCCGGCATTTAAGTTTCATACCCATCCTTCTGTTATCATGATCTAGACCCAGTAGTGTGCTGCAACCTTGACTGACTGCATGATTGTTCGCGATCAGGCTGAACTAATCCTTCTCTTGATCTTCCAACTATGTTATCGGCAATTGAGTAGGATCAATTCTCCAATTAGTGACCTTTTACTGGAAACGGAGTGGTAGTGATTACCAGTCGTATCTACTCCATTTAGTGACTAGCAGTTGTATCTACTCCATTTAGTGAGTTTTTATGTCTTTAGGTGTATGTCTTTTGCGTAGCTTTGATATCTTCTTTTGCGTGGCGCTGGTGCTTCCGTGTAGCTCCTTTTTCTAAAGAAAATGGACAAATATTGAATGCAACTGTTATTTACCGCTTTGACATGATATCCATCTCATTTTTCCTCTTTGAAGCACTTTCATCTGATTGTTGAGATAAGAGATAGCTCTTCAGCGCTCTCTATTGTCTTTTCCTTCCAATTTGTCTCATGACACATCATTTTGGCGCTGCAGAAATGGTTTTGAGCTCATGAGATTAATTTTTCCTATGTAGCATAGGTTCTAAATAATAAAGTGCCCTTGTGTTTTGGAAGAGCAAAATATCGCTCCATCTTAGACCATCATAATAGGACAATCATTACTGGAAGAATTACTCTGGGATGATGTGTCTTTATATCTTTGCTTATACAGTTTTTATTGAATTCATAGCTGAGGCCCATATTTGGTAGAGATTCTGATTTTTTTTTTAACTAAAATATATTTAGGTATATAGAAAATAAAATTAATATTGTTTTGCTAGCATTGATTCTTTAATGGTGATTTTTGAATGGATGACACATAAAATTGATGTCATTGGATAATTTTGTACCACCAGCAGATGCATGAGAAAGGAAGTGAATATTTACTTAGATTTGTATGTATTGAAATATAGAAATTGAAAGATGTAGGACTGGAACTGGGAAGAAATCATTTATTTTTGCATTAGATGAATAAATACTGTTTCAAAGCTAAAAAAAACGATGAATACTATTGAAAAGCTTAATGTGAATAAACTGCTGTTTTTTTTAAAAAAATCTTAAGTGTTTTTCCGATTATGTGGTGCGTGGTAGCATTTCAAAGAGAAAATGTCATACATGCCTACTTTTTGTGGCGCATACTTCTTTTTGATAATGCTACTGCCATATGTTATATTGCTTCAAGGCTAATTTGGTTCATGGGTGGAAAGGGGTCATATATGTCTCTGACGCAGAACTGACTACTGTTACTTGTGGTCACACAAACTTGTCAAGTAGCCTTACATATGATATTCTTGGGATCCAATTTGATATCTTTGATAGGTTAATTCACTTGGTTGATTTGTTAGTTTTTCCTCGCTTTGTCATTGCCATGACACTACTTCCTCTATTGTGTCTTGCGACCACTGACTGGTAATTAAAGAGTGCACATAATACTGCTTGTACATTTTTCAGCTATACCTACTTGAAAAACTTAGATGTTTTAACATTCAATTATTGATATGTTTGTTCCCGTTTGCTCTGTCAAATTCAGCAGTCTATGGTTTATAATTGTGCCTTGAAGAAAACCAAACTTTCAGCATGTTTTCTAGTAACAATTTTACATTAAAGACGATATCATGCATGCTGATTTTTCATTTTTTTTTTCTGTTTTTGTAGCAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAGGTAATTTCTTAATGGTCAATCCAGATTATTCTTACATTGATAGGATGGGGTATGTCTTTCTTGAAAGGTTCATAACAGTTATACTTTCTTTATGCCCAACTTCAGTCATCAAAAAAACTATATCATCAGTTACTACAATGCCCTAACATGTTGTGAAGTAGGATGGCATGGAAATTTCGGATGGTGTTTATTATTAGGCTTGTGCTTTTCCTGGAATAAGAAACTAATTGTCTGGTCTAGGGATGGCGGTTTCCTCTATAGCTCTTGAAGTAAAATGAGGATACTCATCTAGTGGTGGTATAAATGTCAAGGATAAGCCTGTTTGCTGCATGTAGTTGCTCTAATAACGAAGTTGTGCTTCACATTTATAGTTTCTAGTATAAAACTGATTTATTGTCCTAAGAACTCAATTTTGTCGATGGTTCAACTCACAGGTTTTAGTTAATCTTGTCTCGCCTTATGATAATTTGTTCGGTCCTCTATTTTGTTTAATATACTTTTCTAATTTAATTGAGTCAGCATGTGAAAGTCTTCCTATTATGAAAAGGTGTGTGTAGTGTATTTGATATTCACATGATTATTTTTCTTACATTCAGATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGTGTAAGTATATTATTTTACCTAACAATTCTTTGTATCAATACGTTTAAATTCTTGTCATTGTCTGCTTTATCTGGATGTTGACATTCTTGGGGTGGGGTGAGGGTGGTGATTTGGTGGGTGGTTAGCCTTGGAAAGGGCTTGCTCCTATGTTTTGACTTTATTCTGCTGCTGGCCGAAACTAGTGAGGATAGTGATGCGTATTGGAGCTGATTTGGAAAATAAAAGGTTGAGAAGTCCTGATTCGGCAACCACTGATCCAAGGGGGACCAAGTGATTCTTAAATCAAACTGTAAGGGCAAAGTGGAACATTGTTGGTTAACGTTGCGCAAAAGTCCAAAGTTGGAAGATGGTGACAAAATTTATATGTAATCTATGTTGCTGGGATTCTCCAAGAAATAGTGCTGCACCCATGCTAGATCCTCCAAAATGCACTACTTTTGAAGGATTCGACATGCTCTCATCAACATTTTAGAGTCCGAGCAACATAACTTGTATTAAGTTTATTTTAGAATGTAAGGGGTCGTTTGGTACAAAAATTAATGACACACTGATTAGTAATGCAAGGATTACTAATGCAGGGGTAAGTAGGGGTTAGTAGTGCAGGAATATGTAATGCAGGGTTTACTTTTACCAAATGTTTGGCTCATTGTTTCCTACCCCATCTTGTGTTTGGATTAAAACTCTATAAGAAGTTTTTTTCCAATTATACCCTTGAATTATTATGCAATTGGGTCAAGAAAGATAATTCCCTGCAGTCTTTTGTAACTTCTGGTTTTGGTACCTTTTTGGTACTTTAGGCAATAAACCTTTACCTTATAAACAAAAAAAAAATATTTTTCTATGGCTCCCTAACTTGCTAGGGGTTGAACAATTTTGTTGTCATGTTTGCTATTTTTTCTCTTGAATTATTTAAGGATAACTAGTTGTCATATTAATGAATTGATCACTCACAAAATGTCAATTTTCAATTTAAAAAAGATAAACCCCATCTACTTTTAAAACGAAAAGACGGTAAACAATAAGAAAATTAAATAAATCATCTACATTTATATATATATATATATATATATATATATATATACACACACACACACACATAGATGATTGAAGAAACAGCGTAAAAGAATCTATTTGGACTTTGTTCTTATGTGCTAAAAAAAGAAAAAAAGGTTCCCGTTAAACTTATCTTTTGAGACATTTTGTAGTGTATCGGCACTTCAGTTCCAAGTCGATATCATTCTACTATCTGTATGTGATCTTTGCTTCTAACTTGGAGGAACATTTTGTAACTTGATACCTTCAGCCCCCCTACATACAGTGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCTGCAGATGGAAGTATGGTATGCTCCCTTTCCATTTAGGAGATGTGGTTTGTCACCATAAATTTACAGGTTTTCGACTTGTAGTTCTTTTCTGTAGGTTTTCCGGTTGCGTGAAGGT-GTGGGTGTGGCAACTAACAACGTTGC</genome_strand>
        <mrna_strand>CCCAACTACTCCCTTCACTCTCTTCCTCTGCTCG..................................................................................................................................................................................................................................................................................................TGGTGGAGTAACTTGCAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCT.............................................................................................................................................................................................................................GTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCCTACATACAGTGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCTGCAAATGGAAATATG...............................................................................GTTTTCCGGTTGCGTGAAGGTGGTGGGTGTGGCAACTAACAACGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E247663" ref_strand="+" ref_description="SGN-E247663 [cLEF-42-E7]">
      <seq>ccaactactcccttcactctcttcctctgctcgtggtggagtaacttgcaaagccaagtaaacgcgttggagttggacacataaatgggggacgaaaaggatgctttttatgtcgtgcataaaggggatgtgatcgctgtctataagaacctcagtgatttacaagctctgctacgatcttctgttggtgaaccagctataagtgtttataaagggtatcacctggctaagcaatcagaagagtatttggcatctcatggactcaaaaatgcaatgtattctatggatttcagtgatgttcgagatgatctctttgggatactcgtcccatgcccttttcggcaacctggctcttcgaaagataaaattatggggaagaatcttccggagaagaggatgcagatggaggtggttgcatctccttcgttttcagccgctggtcagcaaaaacatgccacattagacaattgcctagaaattcccccgatttcgtcatattgtcccccctacatacagtgttcatgcattcttgagtttgatggggcttcaaaggggaatcctggaccagctggtgctggtgccgtgctgcgtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="4451" stop="9868"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4751" g_stop="4783" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4784" i_stop="5073" i_length="290">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5074" g_stop="5223" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="183" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5224" i_stop="5444" i_length="221">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5445" g_stop="5603" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="342" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5604" i_stop="7417" i_length="1814">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7418" g_stop="7477" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="402" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7478" i_stop="8073" i_length="596">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8074" g_stop="8172" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="501" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="8173" i_stop="9475" i_length="1303">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9476" g_stop="9568" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="594" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E247663" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4751" e_stop="4783"/>
          <exon e_start="5074" e_stop="5223"/>
          <exon e_start="5445" e_stop="5603"/>
          <exon e_start="7418" e_stop="7477"/>
          <exon e_start="8074" e_stop="8172"/>
          <exon e_start="9476" e_stop="9568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACTACTCCCTTCACTCTCTTCCTCTGCTCGGTAAGAATCTTCATTGTATTCTTTCACTTTTCTATGTTTTCAGAAATCCTAATTCGTTTATCTTTGTGTCTAAAGTACGATTTTTATTCAATACAAAAAAACCCTAATTGAGATGGTAATTGAGTATCATTGCTACTATATTAACTGCAACTGATCATACATGCAGGGTAATATGTATACTGAAAATTGTTCAGTGAGTTTAGAATGTAGTTTTTTTTTTTTCTGGAACTTGGACTTTAAGTATTTGTTTCTGTGTTTTCACTAAGTAATACTGTGTTGTGTTGATACAGTGGTGGAGTAACTTGCAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCTGTACGTTTCCTTTAATGTTTTTTCTGCTTTTGGGCCTTAGACGGCCTTATCTGTTGGACTACTTTTTTTGGAGTCATGTAGAGCTCAAGTATAAGAAGAGTCTAATTATTACAGCTTTTTAACAATGATGAAGAAATAGAGCTTAGTTGATTTGAGCACAAGTAATAATATTATCAGATGCTCTTTTGATGTATTTTCTATTATTTTCTGTGATCTTTCAGGTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGGGTTAGAAAGTTTATCATTTTATTATTATTGAACTGGTGGTAGATGTAGTTGTTTAATCTATTTGACAATTTTGTCTTAACTGTTTAATAATAGCTGGGTCAAATTTTGGTTAATGTGGATGCTAAAATTTGTCCGGCATTTAAGTTTCATACCCATCCTTCTGTTATCATGATCTAGACCCAGTAGTGTGCTGCAACCTTGACTGACTGCATGATTGTTCGCGATCAGGCTGAACTAATCCTTCTCTTGATCTTCCAACTATGTTATCGGCAATTGAGTAGGATCAATTCTCCAATTAGTGACCTTTTACTGGAAACGGAGTGGTAGTGATTACCAGTCGTATCTACTCCATTTAGTGACTAGCAGTTGTATCTACTCCATTTAGTGAGTTTTTATGTCTTTAGGTGTATGTCTTTTGCGTAGCTTTGATATCTTCTTTTGCGTGGCGCTGGTGCTTCCGTGTAGCTCCTTTTTCTAAAGAAAATGGACAAATATTGAATGCAACTGTTATTTACCGCTTTGACATGATATCCATCTCATTTTTCCTCTTTGAAGCACTTTCATCTGATTGTTGAGATAAGAGATAGCTCTTCAGCGCTCTCTATTGTCTTTTCCTTCCAATTTGTCTCATGACACATCATTTTGGCGCTGCAGAAATGGTTTTGAGCTCATGAGATTAATTTTTCCTATGTAGCATAGGTTCTAAATAATAAAGTGCCCTTGTGTTTTGGAAGAGCAAAATATCGCTCCATCTTAGACCATCATAATAGGACAATCATTACTGGAAGAATTACTCTGGGATGATGTGTCTTTATATCTTTGCTTATACAGTTTTTATTGAATTCATAGCTGAGGCCCATATTTGGTAGAGATTCTGATTTTTTTTTTAACTAAAATATATTTAGGTATATAGAAAATAAAATTAATATTGTTTTGCTAGCATTGATTCTTTAATGGTGATTTTTGAATGGATGACACATAAAATTGATGTCATTGGATAATTTTGTACCACCAGCAGATGCATGAGAAAGGAAGTGAATATTTACTTAGATTTGTATGTATTGAAATATAGAAATTGAAAGATGTAGGACTGGAACTGGGAAGAAATCATTTATTTTTGCATTAGATGAATAAATACTGTTTCAAAGCTAAAAAAAACGATGAATACTATTGAAAAGCTTAATGTGAATAAACTGCTGTTTTTTTTAAAAAAATCTTAAGTGTTTTTCCGATTATGTGGTGCGTGGTAGCATTTCAAAGAGAAAATGTCATACATGCCTACTTTTTGTGGCGCATACTTCTTTTTGATAATGCTACTGCCATATGTTATATTGCTTCAAGGCTAATTTGGTTCATGGGTGGAAAGGGGTCATATATGTCTCTGACGCAGAACTGACTACTGTTACTTGTGGTCACACAAACTTGTCAAGTAGCCTTACATATGATATTCTTGGGATCCAATTTGATATCTTTGATAGGTTAATTCACTTGGTTGATTTGTTAGTTTTTCCTCGCTTTGTCATTGCCATGACACTACTTCCTCTATTGTGTCTTGCGACCACTGACTGGTAATTAAAGAGTGCACATAATACTGCTTGTACATTTTTCAGCTATACCTACTTGAAAAACTTAGATGTTTTAACATTCAATTATTGATATGTTTGTTCCCGTTTGCTCTGTCAAATTCAGCAGTCTATGGTTTATAATTGTGCCTTGAAGAAAACCAAACTTTCAGCATGTTTTCTAGTAACAATTTTACATTAAAGACGATATCATGCATGCTGATTTTTCATTTTTTTTTTCTGTTTTTGTAGCAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAGGTAATTTCTTAATGGTCAATCCAGATTATTCTTACATTGATAGGATGGGGTATGTCTTTCTTGAAAGGTTCATAACAGTTATACTTTCTTTATGCCCAACTTCAGTCATCAAAAAAACTATATCATCAGTTACTACAATGCCCTAACATGTTGTGAAGTAGGATGGCATGGAAATTTCGGATGGTGTTTATTATTAGGCTTGTGCTTTTCCTGGAATAAGAAACTAATTGTCTGGTCTAGGGATGGCGGTTTCCTCTATAGCTCTTGAAGTAAAATGAGGATACTCATCTAGTGGTGGTATAAATGTCAAGGATAAGCCTGTTTGCTGCATGTAGTTGCTCTAATAACGAAGTTGTGCTTCACATTTATAGTTTCTAGTATAAAACTGATTTATTGTCCTAAGAACTCAATTTTGTCGATGGTTCAACTCACAGGTTTTAGTTAATCTTGTCTCGCCTTATGATAATTTGTTCGGTCCTCTATTTTGTTTAATATACTTTTCTAATTTAATTGAGTCAGCATGTGAAAGTCTTCCTATTATGAAAAGGTGTGTGTAGTGTATTTGATATTCACATGATTATTTTTCTTACATTCAGATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGTGTAAGTATATTATTTTACCTAACAATTCTTTGTATCAATACGTTTAAATTCTTGTCATTGTCTGCTTTATCTGGATGTTGACATTCTTGGGGTGGGGTGAGGGTGGTGATTTGGTGGGTGGTTAGCCTTGGAAAGGGCTTGCTCCTATGTTTTGACTTTATTCTGCTGCTGGCCGAAACTAGTGAGGATAGTGATGCGTATTGGAGCTGATTTGGAAAATAAAAGGTTGAGAAGTCCTGATTCGGCAACCACTGATCCAAGGGGGACCAAGTGATTCTTAAATCAAACTGTAAGGGCAAAGTGGAACATTGTTGGTTAACGTTGCGCAAAAGTCCAAAGTTGGAAGATGGTGACAAAATTTATATGTAATCTATGTTGCTGGGATTCTCCAAGAAATAGTGCTGCACCCATGCTAGATCCTCCAAAATGCACTACTTTTGAAGGATTCGACATGCTCTCATCAACATTTTAGAGTCCGAGCAACATAACTTGTATTAAGTTTATTTTAGAATGTAAGGGGTCGTTTGGTACAAAAATTAATGACACACTGATTAGTAATGCAAGGATTACTAATGCAGGGGTAAGTAGGGGTTAGTAGTGCAGGAATATGTAATGCAGGGTTTACTTTTACCAAATGTTTGGCTCATTGTTTCCTACCCCATCTTGTGTTTGGATTAAAACTCTATAAGAAGTTTTTTTCCAATTATACCCTTGAATTATTATGCAATTGGGTCAAGAAAGATAATTCCCTGCAGTCTTTTGTAACTTCTGGTTTTGGTACCTTTTTGGTACTTTAGGCAATAAACCTTTACCTTATAAACAAAAAAAAAATATTTTTCTATGGCTCCCTAACTTGCTAGGGGTTGAACAATTTTGTTGTCATGTTTGCTATTTTTTCTCTTGAATTATTTAAGGATAACTAGTTGTCATATTAATGAATTGATCACTCACAAAATGTCAATTTTCAATTTAAAAAAGATAAACCCCATCTACTTTTAAAACGAAAAGACGGTAAACAATAAGAAAATTAAATAAATCATCTACATTTATATATATATATATATATATATATATATATATACACACACACACACACATAGATGATTGAAGAAACAGCGTAAAAGAATCTATTTGGACTTTGTTCTTATGTGCTAAAAAAAGAAAAAAAGGTTCCCGTTAAACTTATCTTTTGAGACATTTTGTAGTGTATCGGCACTTCAGTTCCAAGTCGATATCATTCTACTATCTGTATGTGATCTTTGCTTCTAACTTGGAGGAACATTTTGTAACTTGATACCTTCAGCCCCCCTACATACAGTGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCT</genome_strand>
        <mrna_strand>CCAACTACTCCCTTCACTCTCTTCCTCTGCTCG..................................................................................................................................................................................................................................................................................................TGGTGGAGTAACTTGCAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCT.............................................................................................................................................................................................................................GTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCCTACATACAGTGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E418408" ref_strand="+" ref_description="SGN-E418408 [STM-27-M20]">
      <seq>ttcactctcttcctctgctcgtggtggagtaacttgcaaagccaaataaacgcgttggagttggacacataaatgggggacgaaaaggatgctttttatgtcgtgcataaaggggatgtgatcgctgtctataagaacctgagtgatttacaagctctgctacgatcttctgttggtgaaccagccataagtgtttataaagggtatcacctggctaagcaatcagaagagtatttggcatctcatggactcaaaaatgcaatgtattctatggatttcagtgatgttcgagatgatctctttgggatactcgtcccatgcccttttcggcaacctggctcttcgaaagataaaattatcgggaagaatcttcaggaaaagaggatgcagatggaggtggttgcatctccttcgttttcagccgctggtcagcaaaaaaatgccaaattagacaattgcctagaaattcccccgatttcgtcatattgtcccccctacgtgcagtgttcatgcattattgagtttgatggggcttcaaaggggaatcctggaccagctggtgctggtgctgtgctgcgtgctgcagatggaagtatggtatgctccctttccatttagaagatgtggtttgtcgccacaaatttacaggttttcgacttgtagttcttttctgtaggttttccggttgcgtgaaggtgtgggtgtggcaactaacaacgttgctgaatacagagtgtaatcttagggctaaaatatgctcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="4463" stop="10051"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4763" g_stop="4783" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4784" i_stop="5073" i_length="290">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5074" g_stop="5223" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="171" r_length="150" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5224" i_stop="5444" i_length="221">
            <donor d_prob="0.893" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5445" g_stop="5603" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="330" r_length="159" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5604" i_stop="7417" i_length="1814">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7418" g_stop="7477" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="390" r_length="60" r_score="0.950"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7478" i_stop="8073" i_length="596">
            <donor d_prob="0.961" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8074" g_stop="8172" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="489" r_length="99" r_score="0.980"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="8173" i_stop="9475" i_length="1303">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.767" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9476" g_stop="9751" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="764" r_length="275" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E418408" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E418408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4763" e_stop="4783"/>
          <exon e_start="5074" e_stop="5223"/>
          <exon e_start="5445" e_stop="5603"/>
          <exon e_start="7418" e_stop="7477"/>
          <exon e_start="8074" e_stop="8172"/>
          <exon e_start="9476" e_stop="9751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACTCTCTTCCTCTGCTCGGTAAGAATCTTCATTGTATTCTTTCACTTTTCTATGTTTTCAGAAATCCTAATTCGTTTATCTTTGTGTCTAAAGTACGATTTTTATTCAATACAAAAAAACCCTAATTGAGATGGTAATTGAGTATCATTGCTACTATATTAACTGCAACTGATCATACATGCAGGGTAATATGTATACTGAAAATTGTTCAGTGAGTTTAGAATGTAGTTTTTTTTTTTTCTGGAACTTGGACTTTAAGTATTTGTTTCTGTGTTTTCACTAAGTAATACTGTGTTGTGTTGATACAGTGGTGGAGTAACTTGCAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCTGTACGTTTCCTTTAATGTTTTTTCTGCTTTTGGGCCTTAGACGGCCTTATCTGTTGGACTACTTTTTTTGGAGTCATGTAGAGCTCAAGTATAAGAAGAGTCTAATTATTACAGCTTTTTAACAATGATGAAGAAATAGAGCTTAGTTGATTTGAGCACAAGTAATAATATTATCAGATGCTCTTTTGATGTATTTTCTATTATTTTCTGTGATCTTTCAGGTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGGGTTAGAAAGTTTATCATTTTATTATTATTGAACTGGTGGTAGATGTAGTTGTTTAATCTATTTGACAATTTTGTCTTAACTGTTTAATAATAGCTGGGTCAAATTTTGGTTAATGTGGATGCTAAAATTTGTCCGGCATTTAAGTTTCATACCCATCCTTCTGTTATCATGATCTAGACCCAGTAGTGTGCTGCAACCTTGACTGACTGCATGATTGTTCGCGATCAGGCTGAACTAATCCTTCTCTTGATCTTCCAACTATGTTATCGGCAATTGAGTAGGATCAATTCTCCAATTAGTGACCTTTTACTGGAAACGGAGTGGTAGTGATTACCAGTCGTATCTACTCCATTTAGTGACTAGCAGTTGTATCTACTCCATTTAGTGAGTTTTTATGTCTTTAGGTGTATGTCTTTTGCGTAGCTTTGATATCTTCTTTTGCGTGGCGCTGGTGCTTCCGTGTAGCTCCTTTTTCTAAAGAAAATGGACAAATATTGAATGCAACTGTTATTTACCGCTTTGACATGATATCCATCTCATTTTTCCTCTTTGAAGCACTTTCATCTGATTGTTGAGATAAGAGATAGCTCTTCAGCGCTCTCTATTGTCTTTTCCTTCCAATTTGTCTCATGACACATCATTTTGGCGCTGCAGAAATGGTTTTGAGCTCATGAGATTAATTTTTCCTATGTAGCATAGGTTCTAAATAATAAAGTGCCCTTGTGTTTTGGAAGAGCAAAATATCGCTCCATCTTAGACCATCATAATAGGACAATCATTACTGGAAGAATTACTCTGGGATGATGTGTCTTTATATCTTTGCTTATACAGTTTTTATTGAATTCATAGCTGAGGCCCATATTTGGTAGAGATTCTGATTTTTTTTTTAACTAAAATATATTTAGGTATATAGAAAATAAAATTAATATTGTTTTGCTAGCATTGATTCTTTAATGGTGATTTTTGAATGGATGACACATAAAATTGATGTCATTGGATAATTTTGTACCACCAGCAGATGCATGAGAAAGGAAGTGAATATTTACTTAGATTTGTATGTATTGAAATATAGAAATTGAAAGATGTAGGACTGGAACTGGGAAGAAATCATTTATTTTTGCATTAGATGAATAAATACTGTTTCAAAGCTAAAAAAAACGATGAATACTATTGAAAAGCTTAATGTGAATAAACTGCTGTTTTTTTTAAAAAAATCTTAAGTGTTTTTCCGATTATGTGGTGCGTGGTAGCATTTCAAAGAGAAAATGTCATACATGCCTACTTTTTGTGGCGCATACTTCTTTTTGATAATGCTACTGCCATATGTTATATTGCTTCAAGGCTAATTTGGTTCATGGGTGGAAAGGGGTCATATATGTCTCTGACGCAGAACTGACTACTGTTACTTGTGGTCACACAAACTTGTCAAGTAGCCTTACATATGATATTCTTGGGATCCAATTTGATATCTTTGATAGGTTAATTCACTTGGTTGATTTGTTAGTTTTTCCTCGCTTTGTCATTGCCATGACACTACTTCCTCTATTGTGTCTTGCGACCACTGACTGGTAATTAAAGAGTGCACATAATACTGCTTGTACATTTTTCAGCTATACCTACTTGAAAAACTTAGATGTTTTAACATTCAATTATTGATATGTTTGTTCCCGTTTGCTCTGTCAAATTCAGCAGTCTATGGTTTATAATTGTGCCTTGAAGAAAACCAAACTTTCAGCATGTTTTCTAGTAACAATTTTACATTAAAGACGATATCATGCATGCTGATTTTTCATTTTTTTTTTCTGTTTTTGTAGCAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAGGTAATTTCTTAATGGTCAATCCAGATTATTCTTACATTGATAGGATGGGGTATGTCTTTCTTGAAAGGTTCATAACAGTTATACTTTCTTTATGCCCAACTTCAGTCATCAAAAAAACTATATCATCAGTTACTACAATGCCCTAACATGTTGTGAAGTAGGATGGCATGGAAATTTCGGATGGTGTTTATTATTAGGCTTGTGCTTTTCCTGGAATAAGAAACTAATTGTCTGGTCTAGGGATGGCGGTTTCCTCTATAGCTCTTGAAGTAAAATGAGGATACTCATCTAGTGGTGGTATAAATGTCAAGGATAAGCCTGTTTGCTGCATGTAGTTGCTCTAATAACGAAGTTGTGCTTCACATTTATAGTTTCTAGTATAAAACTGATTTATTGTCCTAAGAACTCAATTTTGTCGATGGTTCAACTCACAGGTTTTAGTTAATCTTGTCTCGCCTTATGATAATTTGTTCGGTCCTCTATTTTGTTTAATATACTTTTCTAATTTAATTGAGTCAGCATGTGAAAGTCTTCCTATTATGAAAAGGTGTGTGTAGTGTATTTGATATTCACATGATTATTTTTCTTACATTCAGATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGTGTAAGTATATTATTTTACCTAACAATTCTTTGTATCAATACGTTTAAATTCTTGTCATTGTCTGCTTTATCTGGATGTTGACATTCTTGGGGTGGGGTGAGGGTGGTGATTTGGTGGGTGGTTAGCCTTGGAAAGGGCTTGCTCCTATGTTTTGACTTTATTCTGCTGCTGGCCGAAACTAGTGAGGATAGTGATGCGTATTGGAGCTGATTTGGAAAATAAAAGGTTGAGAAGTCCTGATTCGGCAACCACTGATCCAAGGGGGACCAAGTGATTCTTAAATCAAACTGTAAGGGCAAAGTGGAACATTGTTGGTTAACGTTGCGCAAAAGTCCAAAGTTGGAAGATGGTGACAAAATTTATATGTAATCTATGTTGCTGGGATTCTCCAAGAAATAGTGCTGCACCCATGCTAGATCCTCCAAAATGCACTACTTTTGAAGGATTCGACATGCTCTCATCAACATTTTAGAGTCCGAGCAACATAACTTGTATTAAGTTTATTTTAGAATGTAAGGGGTCGTTTGGTACAAAAATTAATGACACACTGATTAGTAATGCAAGGATTACTAATGCAGGGGTAAGTAGGGGTTAGTAGTGCAGGAATATGTAATGCAGGGTTTACTTTTACCAAATGTTTGGCTCATTGTTTCCTACCCCATCTTGTGTTTGGATTAAAACTCTATAAGAAGTTTTTTTCCAATTATACCCTTGAATTATTATGCAATTGGGTCAAGAAAGATAATTCCCTGCAGTCTTTTGTAACTTCTGGTTTTGGTACCTTTTTGGTACTTTAGGCAATAAACCTTTACCTTATAAACAAAAAAAAAATATTTTTCTATGGCTCCCTAACTTGCTAGGGGTTGAACAATTTTGTTGTCATGTTTGCTATTTTTTCTCTTGAATTATTTAAGGATAACTAGTTGTCATATTAATGAATTGATCACTCACAAAATGTCAATTTTCAATTTAAAAAAGATAAACCCCATCTACTTTTAAAACGAAAAGACGGTAAACAATAAGAAAATTAAATAAATCATCTACATTTATATATATATATATATATATATATATATATATACACACACACACACACATAGATGATTGAAGAAACAGCGTAAAAGAATCTATTTGGACTTTGTTCTTATGTGCTAAAAAAAGAAAAAAAGGTTCCCGTTAAACTTATCTTTTGAGACATTTTGTAGTGTATCGGCACTTCAGTTCCAAGTCGATATCATTCTACTATCTGTATGTGATCTTTGCTTCTAACTTGGAGGAACATTTTGTAACTTGATACCTTCAGCCCCCCTACATACAGTGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCTGCAGATGGAAGTATGGTATGCTCCCTTTCCATTTAGGAGATGTGGTTTGTCACCATAAATTTACAGGTTTTCGACTTGTAGTTCTTTTCTGTAGGTTTTCCGGTTGCGTGAAGGTGTGGGTGTGGCAACTAACAACGTTGCTGAATATAGAGGTGTAATCTTAGGGCTAAAATATGCTCTTGA</genome_strand>
        <mrna_strand>TTCACTCTCTTCCTCTGCTCG..................................................................................................................................................................................................................................................................................................TGGTGGAGTAACTTGCAAAGCCAAATAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTGAGTGATTTACAAGCTCTGCTACGATCTTCT.............................................................................................................................................................................................................................GTTGGTGAACCAGCCATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCTGGCTCTTCGAAAGATAAAATTATCGGGAAGAATCTTCAGGAAAAGAGGATGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAAAATGCCAAATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCCTACGTGCAGTGTTCATGCATTATTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCTGTGCTGCGTGCTGCAGATGGAAGTATGGTATGCTCCCTTTCCATTTAGAAGATGTGGTTTGTCGCCACAAATTTACAGGTTTTCGACTTGTAGTTCTTTTCTGTAGGTTTTCCGGTTGCGTGAAGGTGTGGGTGTGGCAACTAACAACGTTGCTGAATACAGA-GTGTAATCTTAGGGCTAAAATATGCTCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E441507" ref_strand="+" ref_description="SGN-E441507 [cSTA-30-N15]">
      <seq>ttcactctcttcctctgctcgtggtggagtaacttgcaaagccaaataaacgcgttggagttggacacataaatgggggacgaaaaggatgctttttatgtcgtgcataaaggggatgtgatcgctgtctataagaacctgagtgatttacaagctctgctacgatcttctgttggtgaaccagccataagtgtttataaagggtatcacctggctaagcaatcagaagagtatttggcatctcatggactcaaaaatgcaatgtattctatggatttcagtgatgttcgagatgatctctttgggatactcgtcccatgcccttttcggcaacctggctcttcgaaagataaaattatcgggaagaatcttcaggaaaagaggatgcagatggaggtggttgcatctccttcgttttcagccgctggtcagcaaaaaaatgccaaattagacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="4463" stop="8438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4763" g_stop="4783" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4784" i_stop="5073" i_length="290">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5074" g_stop="5223" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="171" r_length="150" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5224" i_stop="5444" i_length="221">
            <donor d_prob="0.893" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5445" g_stop="5603" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="330" r_length="159" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5604" i_stop="7417" i_length="1814">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7418" g_stop="7477" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="390" r_length="60" r_score="0.950"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7478" i_stop="8073" i_length="596">
            <donor d_prob="0.961" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8074" g_stop="8138" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="455" r_length="65" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E441507" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4763" e_stop="4783"/>
          <exon e_start="5074" e_stop="5223"/>
          <exon e_start="5445" e_stop="5603"/>
          <exon e_start="7418" e_stop="7477"/>
          <exon e_start="8074" e_stop="8138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACTCTCTTCCTCTGCTCGGTAAGAATCTTCATTGTATTCTTTCACTTTTCTATGTTTTCAGAAATCCTAATTCGTTTATCTTTGTGTCTAAAGTACGATTTTTATTCAATACAAAAAAACCCTAATTGAGATGGTAATTGAGTATCATTGCTACTATATTAACTGCAACTGATCATACATGCAGGGTAATATGTATACTGAAAATTGTTCAGTGAGTTTAGAATGTAGTTTTTTTTTTTTCTGGAACTTGGACTTTAAGTATTTGTTTCTGTGTTTTCACTAAGTAATACTGTGTTGTGTTGATACAGTGGTGGAGTAACTTGCAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCTGTACGTTTCCTTTAATGTTTTTTCTGCTTTTGGGCCTTAGACGGCCTTATCTGTTGGACTACTTTTTTTGGAGTCATGTAGAGCTCAAGTATAAGAAGAGTCTAATTATTACAGCTTTTTAACAATGATGAAGAAATAGAGCTTAGTTGATTTGAGCACAAGTAATAATATTATCAGATGCTCTTTTGATGTATTTTCTATTATTTTCTGTGATCTTTCAGGTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGGGTTAGAAAGTTTATCATTTTATTATTATTGAACTGGTGGTAGATGTAGTTGTTTAATCTATTTGACAATTTTGTCTTAACTGTTTAATAATAGCTGGGTCAAATTTTGGTTAATGTGGATGCTAAAATTTGTCCGGCATTTAAGTTTCATACCCATCCTTCTGTTATCATGATCTAGACCCAGTAGTGTGCTGCAACCTTGACTGACTGCATGATTGTTCGCGATCAGGCTGAACTAATCCTTCTCTTGATCTTCCAACTATGTTATCGGCAATTGAGTAGGATCAATTCTCCAATTAGTGACCTTTTACTGGAAACGGAGTGGTAGTGATTACCAGTCGTATCTACTCCATTTAGTGACTAGCAGTTGTATCTACTCCATTTAGTGAGTTTTTATGTCTTTAGGTGTATGTCTTTTGCGTAGCTTTGATATCTTCTTTTGCGTGGCGCTGGTGCTTCCGTGTAGCTCCTTTTTCTAAAGAAAATGGACAAATATTGAATGCAACTGTTATTTACCGCTTTGACATGATATCCATCTCATTTTTCCTCTTTGAAGCACTTTCATCTGATTGTTGAGATAAGAGATAGCTCTTCAGCGCTCTCTATTGTCTTTTCCTTCCAATTTGTCTCATGACACATCATTTTGGCGCTGCAGAAATGGTTTTGAGCTCATGAGATTAATTTTTCCTATGTAGCATAGGTTCTAAATAATAAAGTGCCCTTGTGTTTTGGAAGAGCAAAATATCGCTCCATCTTAGACCATCATAATAGGACAATCATTACTGGAAGAATTACTCTGGGATGATGTGTCTTTATATCTTTGCTTATACAGTTTTTATTGAATTCATAGCTGAGGCCCATATTTGGTAGAGATTCTGATTTTTTTTTTAACTAAAATATATTTAGGTATATAGAAAATAAAATTAATATTGTTTTGCTAGCATTGATTCTTTAATGGTGATTTTTGAATGGATGACACATAAAATTGATGTCATTGGATAATTTTGTACCACCAGCAGATGCATGAGAAAGGAAGTGAATATTTACTTAGATTTGTATGTATTGAAATATAGAAATTGAAAGATGTAGGACTGGAACTGGGAAGAAATCATTTATTTTTGCATTAGATGAATAAATACTGTTTCAAAGCTAAAAAAAACGATGAATACTATTGAAAAGCTTAATGTGAATAAACTGCTGTTTTTTTTAAAAAAATCTTAAGTGTTTTTCCGATTATGTGGTGCGTGGTAGCATTTCAAAGAGAAAATGTCATACATGCCTACTTTTTGTGGCGCATACTTCTTTTTGATAATGCTACTGCCATATGTTATATTGCTTCAAGGCTAATTTGGTTCATGGGTGGAAAGGGGTCATATATGTCTCTGACGCAGAACTGACTACTGTTACTTGTGGTCACACAAACTTGTCAAGTAGCCTTACATATGATATTCTTGGGATCCAATTTGATATCTTTGATAGGTTAATTCACTTGGTTGATTTGTTAGTTTTTCCTCGCTTTGTCATTGCCATGACACTACTTCCTCTATTGTGTCTTGCGACCACTGACTGGTAATTAAAGAGTGCACATAATACTGCTTGTACATTTTTCAGCTATACCTACTTGAAAAACTTAGATGTTTTAACATTCAATTATTGATATGTTTGTTCCCGTTTGCTCTGTCAAATTCAGCAGTCTATGGTTTATAATTGTGCCTTGAAGAAAACCAAACTTTCAGCATGTTTTCTAGTAACAATTTTACATTAAAGACGATATCATGCATGCTGATTTTTCATTTTTTTTTTCTGTTTTTGTAGCAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAGGTAATTTCTTAATGGTCAATCCAGATTATTCTTACATTGATAGGATGGGGTATGTCTTTCTTGAAAGGTTCATAACAGTTATACTTTCTTTATGCCCAACTTCAGTCATCAAAAAAACTATATCATCAGTTACTACAATGCCCTAACATGTTGTGAAGTAGGATGGCATGGAAATTTCGGATGGTGTTTATTATTAGGCTTGTGCTTTTCCTGGAATAAGAAACTAATTGTCTGGTCTAGGGATGGCGGTTTCCTCTATAGCTCTTGAAGTAAAATGAGGATACTCATCTAGTGGTGGTATAAATGTCAAGGATAAGCCTGTTTGCTGCATGTAGTTGCTCTAATAACGAAGTTGTGCTTCACATTTATAGTTTCTAGTATAAAACTGATTTATTGTCCTAAGAACTCAATTTTGTCGATGGTTCAACTCACAGGTTTTAGTTAATCTTGTCTCGCCTTATGATAATTTGTTCGGTCCTCTATTTTGTTTAATATACTTTTCTAATTTAATTGAGTCAGCATGTGAAAGTCTTCCTATTATGAAAAGGTGTGTGTAGTGTATTTGATATTCACATGATTATTTTTCTTACATTCAGATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAA</genome_strand>
        <mrna_strand>TTCACTCTCTTCCTCTGCTCG..................................................................................................................................................................................................................................................................................................TGGTGGAGTAACTTGCAAAGCCAAATAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTGAGTGATTTACAAGCTCTGCTACGATCTTCT.............................................................................................................................................................................................................................GTTGGTGAACCAGCCATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCTGGCTCTTCGAAAGATAAAATTATCGGGAAGAATCTTCAGGAAAAGAGGATGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAAAATGCCAAATTAGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E322581" ref_strand="+" ref_description="SGN-E322581 [cTOB-26-N14]">
      <seq>tctcttcctctgctcgtggtggagtaacttgcaaagccaagtaaacgcgttggagttggacacataaatgggggacgaaaaggatgctttttatgtcgtgcataaaggggatgtgatcgctgtctataagaacctcagtgatttacaagctctgctacgatcttctgttggtgaaccagctataagtgtttataaagggtatcacctggctaagcaatcagaagagtatttggcatctcatggactcaaaaatgcaatgtattctatggatttcagtgatgttcgagatgatctctttgggatactcgtcccatgcccttttcggcaacctggctcttcgaaagataaaattatggggaagaatcttccggagaagaggatgcagatggaggtggttgcatctccttcgttttcagccgctggtcagcaaaaacatgccacattagacaattgcctagaaattcccccgatttcgtcatattgttgttcatgcattcttgagtttgatggggcttcaaaggggaatcctggnacacctggtgctggtgccgtgctgcgtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="4766" stop="9868"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4768" g_stop="4783" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4784" i_stop="5073" i_length="290">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5074" g_stop="5223" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="166" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5224" i_stop="5444" i_length="221">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5445" g_stop="5603" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="325" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5604" i_stop="7417" i_length="1814">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7418" g_stop="7477" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="385" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7478" i_stop="8073" i_length="596">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8074" g_stop="8172" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="484" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="8173" i_stop="9490" i_length="1318">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.556" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9491" g_stop="9568" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="562" r_length="78" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E322581" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4768" e_stop="4783"/>
          <exon e_start="5074" e_stop="5223"/>
          <exon e_start="5445" e_stop="5603"/>
          <exon e_start="7418" e_stop="7477"/>
          <exon e_start="8074" e_stop="8172"/>
          <exon e_start="9491" e_stop="9568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTCCTCTGCTCGGTAAGAATCTTCATTGTATTCTTTCACTTTTCTATGTTTTCAGAAATCCTAATTCGTTTATCTTTGTGTCTAAAGTACGATTTTTATTCAATACAAAAAAACCCTAATTGAGATGGTAATTGAGTATCATTGCTACTATATTAACTGCAACTGATCATACATGCAGGGTAATATGTATACTGAAAATTGTTCAGTGAGTTTAGAATGTAGTTTTTTTTTTTTCTGGAACTTGGACTTTAAGTATTTGTTTCTGTGTTTTCACTAAGTAATACTGTGTTGTGTTGATACAGTGGTGGAGTAACTTGCAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCTGTACGTTTCCTTTAATGTTTTTTCTGCTTTTGGGCCTTAGACGGCCTTATCTGTTGGACTACTTTTTTTGGAGTCATGTAGAGCTCAAGTATAAGAAGAGTCTAATTATTACAGCTTTTTAACAATGATGAAGAAATAGAGCTTAGTTGATTTGAGCACAAGTAATAATATTATCAGATGCTCTTTTGATGTATTTTCTATTATTTTCTGTGATCTTTCAGGTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGGGTTAGAAAGTTTATCATTTTATTATTATTGAACTGGTGGTAGATGTAGTTGTTTAATCTATTTGACAATTTTGTCTTAACTGTTTAATAATAGCTGGGTCAAATTTTGGTTAATGTGGATGCTAAAATTTGTCCGGCATTTAAGTTTCATACCCATCCTTCTGTTATCATGATCTAGACCCAGTAGTGTGCTGCAACCTTGACTGACTGCATGATTGTTCGCGATCAGGCTGAACTAATCCTTCTCTTGATCTTCCAACTATGTTATCGGCAATTGAGTAGGATCAATTCTCCAATTAGTGACCTTTTACTGGAAACGGAGTGGTAGTGATTACCAGTCGTATCTACTCCATTTAGTGACTAGCAGTTGTATCTACTCCATTTAGTGAGTTTTTATGTCTTTAGGTGTATGTCTTTTGCGTAGCTTTGATATCTTCTTTTGCGTGGCGCTGGTGCTTCCGTGTAGCTCCTTTTTCTAAAGAAAATGGACAAATATTGAATGCAACTGTTATTTACCGCTTTGACATGATATCCATCTCATTTTTCCTCTTTGAAGCACTTTCATCTGATTGTTGAGATAAGAGATAGCTCTTCAGCGCTCTCTATTGTCTTTTCCTTCCAATTTGTCTCATGACACATCATTTTGGCGCTGCAGAAATGGTTTTGAGCTCATGAGATTAATTTTTCCTATGTAGCATAGGTTCTAAATAATAAAGTGCCCTTGTGTTTTGGAAGAGCAAAATATCGCTCCATCTTAGACCATCATAATAGGACAATCATTACTGGAAGAATTACTCTGGGATGATGTGTCTTTATATCTTTGCTTATACAGTTTTTATTGAATTCATAGCTGAGGCCCATATTTGGTAGAGATTCTGATTTTTTTTTTAACTAAAATATATTTAGGTATATAGAAAATAAAATTAATATTGTTTTGCTAGCATTGATTCTTTAATGGTGATTTTTGAATGGATGACACATAAAATTGATGTCATTGGATAATTTTGTACCACCAGCAGATGCATGAGAAAGGAAGTGAATATTTACTTAGATTTGTATGTATTGAAATATAGAAATTGAAAGATGTAGGACTGGAACTGGGAAGAAATCATTTATTTTTGCATTAGATGAATAAATACTGTTTCAAAGCTAAAAAAAACGATGAATACTATTGAAAAGCTTAATGTGAATAAACTGCTGTTTTTTTTAAAAAAATCTTAAGTGTTTTTCCGATTATGTGGTGCGTGGTAGCATTTCAAAGAGAAAATGTCATACATGCCTACTTTTTGTGGCGCATACTTCTTTTTGATAATGCTACTGCCATATGTTATATTGCTTCAAGGCTAATTTGGTTCATGGGTGGAAAGGGGTCATATATGTCTCTGACGCAGAACTGACTACTGTTACTTGTGGTCACACAAACTTGTCAAGTAGCCTTACATATGATATTCTTGGGATCCAATTTGATATCTTTGATAGGTTAATTCACTTGGTTGATTTGTTAGTTTTTCCTCGCTTTGTCATTGCCATGACACTACTTCCTCTATTGTGTCTTGCGACCACTGACTGGTAATTAAAGAGTGCACATAATACTGCTTGTACATTTTTCAGCTATACCTACTTGAAAAACTTAGATGTTTTAACATTCAATTATTGATATGTTTGTTCCCGTTTGCTCTGTCAAATTCAGCAGTCTATGGTTTATAATTGTGCCTTGAAGAAAACCAAACTTTCAGCATGTTTTCTAGTAACAATTTTACATTAAAGACGATATCATGCATGCTGATTTTTCATTTTTTTTTTCTGTTTTTGTAGCAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAGGTAATTTCTTAATGGTCAATCCAGATTATTCTTACATTGATAGGATGGGGTATGTCTTTCTTGAAAGGTTCATAACAGTTATACTTTCTTTATGCCCAACTTCAGTCATCAAAAAAACTATATCATCAGTTACTACAATGCCCTAACATGTTGTGAAGTAGGATGGCATGGAAATTTCGGATGGTGTTTATTATTAGGCTTGTGCTTTTCCTGGAATAAGAAACTAATTGTCTGGTCTAGGGATGGCGGTTTCCTCTATAGCTCTTGAAGTAAAATGAGGATACTCATCTAGTGGTGGTATAAATGTCAAGGATAAGCCTGTTTGCTGCATGTAGTTGCTCTAATAACGAAGTTGTGCTTCACATTTATAGTTTCTAGTATAAAACTGATTTATTGTCCTAAGAACTCAATTTTGTCGATGGTTCAACTCACAGGTTTTAGTTAATCTTGTCTCGCCTTATGATAATTTGTTCGGTCCTCTATTTTGTTTAATATACTTTTCTAATTTAATTGAGTCAGCATGTGAAAGTCTTCCTATTATGAAAAGGTGTGTGTAGTGTATTTGATATTCACATGATTATTTTTCTTACATTCAGATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGTGTAAGTATATTATTTTACCTAACAATTCTTTGTATCAATACGTTTAAATTCTTGTCATTGTCTGCTTTATCTGGATGTTGACATTCTTGGGGTGGGGTGAGGGTGGTGATTTGGTGGGTGGTTAGCCTTGGAAAGGGCTTGCTCCTATGTTTTGACTTTATTCTGCTGCTGGCCGAAACTAGTGAGGATAGTGATGCGTATTGGAGCTGATTTGGAAAATAAAAGGTTGAGAAGTCCTGATTCGGCAACCACTGATCCAAGGGGGACCAAGTGATTCTTAAATCAAACTGTAAGGGCAAAGTGGAACATTGTTGGTTAACGTTGCGCAAAAGTCCAAAGTTGGAAGATGGTGACAAAATTTATATGTAATCTATGTTGCTGGGATTCTCCAAGAAATAGTGCTGCACCCATGCTAGATCCTCCAAAATGCACTACTTTTGAAGGATTCGACATGCTCTCATCAACATTTTAGAGTCCGAGCAACATAACTTGTATTAAGTTTATTTTAGAATGTAAGGGGTCGTTTGGTACAAAAATTAATGACACACTGATTAGTAATGCAAGGATTACTAATGCAGGGGTAAGTAGGGGTTAGTAGTGCAGGAATATGTAATGCAGGGTTTACTTTTACCAAATGTTTGGCTCATTGTTTCCTACCCCATCTTGTGTTTGGATTAAAACTCTATAAGAAGTTTTTTTCCAATTATACCCTTGAATTATTATGCAATTGGGTCAAGAAAGATAATTCCCTGCAGTCTTTTGTAACTTCTGGTTTTGGTACCTTTTTGGTACTTTAGGCAATAAACCTTTACCTTATAAACAAAAAAAAAATATTTTTCTATGGCTCCCTAACTTGCTAGGGGTTGAACAATTTTGTTGTCATGTTTGCTATTTTTTCTCTTGAATTATTTAAGGATAACTAGTTGTCATATTAATGAATTGATCACTCACAAAATGTCAATTTTCAATTTAAAAAAGATAAACCCCATCTACTTTTAAAACGAAAAGACGGTAAACAATAAGAAAATTAAATAAATCATCTACATTTATATATATATATATATATATATATATATATATACACACACACACACACATAGATGATTGAAGAAACAGCGTAAAAGAATCTATTTGGACTTTGTTCTTATGTGCTAAAAAAAGAAAAAAAGGTTCCCGTTAAACTTATCTTTTGAGACATTTTGTAGTGTATCGGCACTTCAGTTCCAAGTCGATATCATTCTACTATCTGTATGTGATCTTTGCTTCTAACTTGGAGGAACATTTTGTAACTTGATACCTTCAGCCCCCCTACATACAGTGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCT</genome_strand>
        <mrna_strand>TCTCTTCCTCTGCTCG..................................................................................................................................................................................................................................................................................................TGGTGGAGTAACTTGCAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCT.............................................................................................................................................................................................................................GTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGNACACCTGGTGCTGGTGCCGTGCTGCGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E262841" ref_strand="+" ref_description="SGN-E262841 [cLEG-59-K21]">
      <seq>caaagccaagtaaacgcgttggagttggacacataaatgggggacgaaaaggatgctttttatgtcgtgcataaaggggatgtgatcgctgtctataagaacctcagtgatttacaagctctgctacgatcttctgttggtgaaccagctataagtgtttataaagggtatcacctggctaagcaatcagaagagtatttggcatctcatggactcaaaaatgcaatgtattctatggatttcagtgatgttcgagatgatctctttgggatactcgtcccatgcccttttcggcaacctggctcttcgaaagataaaattatggggaagaatcttccggagaagaggatgcagatggaggtggttgcatctccttcgttttcagccgctggtcagcaaaaacatgccacattagacaattgcctagaaattcccccgatttcgtcatattgttgttcatgcattcttgagtttgatggggcttcaaaggggaatcctggaccagctggtgctggtgccgtgctgcgtgctgcagatggaagtatggttttccggttgcgtgaaggtgtgggtgtggcaactaacaacgttgctgaatatagaggtgtaatcttagggctaaaatatgctcttgagaaaggtttcaaacatgtaaaagttaagggtgactcaaaactcgtctgcatgcagactcaaggaatctggaaatgcaagaaccagaacatggctgagcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="4789" stop="11329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5089" g_stop="5223" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5224" i_stop="5444" i_length="221">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5445" g_stop="5603" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="294" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5604" i_stop="7417" i_length="1814">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7418" g_stop="7477" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="354" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7478" i_stop="8073" i_length="596">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8074" g_stop="8172" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="453" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8173" i_stop="9490" i_length="1318">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.556" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9491" g_stop="9583" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="546" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9584" i_stop="9662" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9663" g_stop="9806" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="690" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="9807" i_stop="10984" i_length="1178">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="10985" g_stop="11029" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="691" r_stop="735" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E262841" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5089" e_stop="5223"/>
          <exon e_start="5445" e_stop="5603"/>
          <exon e_start="7418" e_stop="7477"/>
          <exon e_start="8074" e_stop="8172"/>
          <exon e_start="9491" e_stop="9583"/>
          <exon e_start="9663" e_stop="9806"/>
          <exon e_start="10985" e_stop="11029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCTGTACGTTTCCTTTAATGTTTTTTCTGCTTTTGGGCCTTAGACGGCCTTATCTGTTGGACTACTTTTTTTGGAGTCATGTAGAGCTCAAGTATAAGAAGAGTCTAATTATTACAGCTTTTTAACAATGATGAAGAAATAGAGCTTAGTTGATTTGAGCACAAGTAATAATATTATCAGATGCTCTTTTGATGTATTTTCTATTATTTTCTGTGATCTTTCAGGTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGGGTTAGAAAGTTTATCATTTTATTATTATTGAACTGGTGGTAGATGTAGTTGTTTAATCTATTTGACAATTTTGTCTTAACTGTTTAATAATAGCTGGGTCAAATTTTGGTTAATGTGGATGCTAAAATTTGTCCGGCATTTAAGTTTCATACCCATCCTTCTGTTATCATGATCTAGACCCAGTAGTGTGCTGCAACCTTGACTGACTGCATGATTGTTCGCGATCAGGCTGAACTAATCCTTCTCTTGATCTTCCAACTATGTTATCGGCAATTGAGTAGGATCAATTCTCCAATTAGTGACCTTTTACTGGAAACGGAGTGGTAGTGATTACCAGTCGTATCTACTCCATTTAGTGACTAGCAGTTGTATCTACTCCATTTAGTGAGTTTTTATGTCTTTAGGTGTATGTCTTTTGCGTAGCTTTGATATCTTCTTTTGCGTGGCGCTGGTGCTTCCGTGTAGCTCCTTTTTCTAAAGAAAATGGACAAATATTGAATGCAACTGTTATTTACCGCTTTGACATGATATCCATCTCATTTTTCCTCTTTGAAGCACTTTCATCTGATTGTTGAGATAAGAGATAGCTCTTCAGCGCTCTCTATTGTCTTTTCCTTCCAATTTGTCTCATGACACATCATTTTGGCGCTGCAGAAATGGTTTTGAGCTCATGAGATTAATTTTTCCTATGTAGCATAGGTTCTAAATAATAAAGTGCCCTTGTGTTTTGGAAGAGCAAAATATCGCTCCATCTTAGACCATCATAATAGGACAATCATTACTGGAAGAATTACTCTGGGATGATGTGTCTTTATATCTTTGCTTATACAGTTTTTATTGAATTCATAGCTGAGGCCCATATTTGGTAGAGATTCTGATTTTTTTTTTAACTAAAATATATTTAGGTATATAGAAAATAAAATTAATATTGTTTTGCTAGCATTGATTCTTTAATGGTGATTTTTGAATGGATGACACATAAAATTGATGTCATTGGATAATTTTGTACCACCAGCAGATGCATGAGAAAGGAAGTGAATATTTACTTAGATTTGTATGTATTGAAATATAGAAATTGAAAGATGTAGGACTGGAACTGGGAAGAAATCATTTATTTTTGCATTAGATGAATAAATACTGTTTCAAAGCTAAAAAAAACGATGAATACTATTGAAAAGCTTAATGTGAATAAACTGCTGTTTTTTTTAAAAAAATCTTAAGTGTTTTTCCGATTATGTGGTGCGTGGTAGCATTTCAAAGAGAAAATGTCATACATGCCTACTTTTTGTGGCGCATACTTCTTTTTGATAATGCTACTGCCATATGTTATATTGCTTCAAGGCTAATTTGGTTCATGGGTGGAAAGGGGTCATATATGTCTCTGACGCAGAACTGACTACTGTTACTTGTGGTCACACAAACTTGTCAAGTAGCCTTACATATGATATTCTTGGGATCCAATTTGATATCTTTGATAGGTTAATTCACTTGGTTGATTTGTTAGTTTTTCCTCGCTTTGTCATTGCCATGACACTACTTCCTCTATTGTGTCTTGCGACCACTGACTGGTAATTAAAGAGTGCACATAATACTGCTTGTACATTTTTCAGCTATACCTACTTGAAAAACTTAGATGTTTTAACATTCAATTATTGATATGTTTGTTCCCGTTTGCTCTGTCAAATTCAGCAGTCTATGGTTTATAATTGTGCCTTGAAGAAAACCAAACTTTCAGCATGTTTTCTAGTAACAATTTTACATTAAAGACGATATCATGCATGCTGATTTTTCATTTTTTTTTTCTGTTTTTGTAGCAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAGGTAATTTCTTAATGGTCAATCCAGATTATTCTTACATTGATAGGATGGGGTATGTCTTTCTTGAAAGGTTCATAACAGTTATACTTTCTTTATGCCCAACTTCAGTCATCAAAAAAACTATATCATCAGTTACTACAATGCCCTAACATGTTGTGAAGTAGGATGGCATGGAAATTTCGGATGGTGTTTATTATTAGGCTTGTGCTTTTCCTGGAATAAGAAACTAATTGTCTGGTCTAGGGATGGCGGTTTCCTCTATAGCTCTTGAAGTAAAATGAGGATACTCATCTAGTGGTGGTATAAATGTCAAGGATAAGCCTGTTTGCTGCATGTAGTTGCTCTAATAACGAAGTTGTGCTTCACATTTATAGTTTCTAGTATAAAACTGATTTATTGTCCTAAGAACTCAATTTTGTCGATGGTTCAACTCACAGGTTTTAGTTAATCTTGTCTCGCCTTATGATAATTTGTTCGGTCCTCTATTTTGTTTAATATACTTTTCTAATTTAATTGAGTCAGCATGTGAAAGTCTTCCTATTATGAAAAGGTGTGTGTAGTGTATTTGATATTCACATGATTATTTTTCTTACATTCAGATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGTGTAAGTATATTATTTTACCTAACAATTCTTTGTATCAATACGTTTAAATTCTTGTCATTGTCTGCTTTATCTGGATGTTGACATTCTTGGGGTGGGGTGAGGGTGGTGATTTGGTGGGTGGTTAGCCTTGGAAAGGGCTTGCTCCTATGTTTTGACTTTATTCTGCTGCTGGCCGAAACTAGTGAGGATAGTGATGCGTATTGGAGCTGATTTGGAAAATAAAAGGTTGAGAAGTCCTGATTCGGCAACCACTGATCCAAGGGGGACCAAGTGATTCTTAAATCAAACTGTAAGGGCAAAGTGGAACATTGTTGGTTAACGTTGCGCAAAAGTCCAAAGTTGGAAGATGGTGACAAAATTTATATGTAATCTATGTTGCTGGGATTCTCCAAGAAATAGTGCTGCACCCATGCTAGATCCTCCAAAATGCACTACTTTTGAAGGATTCGACATGCTCTCATCAACATTTTAGAGTCCGAGCAACATAACTTGTATTAAGTTTATTTTAGAATGTAAGGGGTCGTTTGGTACAAAAATTAATGACACACTGATTAGTAATGCAAGGATTACTAATGCAGGGGTAAGTAGGGGTTAGTAGTGCAGGAATATGTAATGCAGGGTTTACTTTTACCAAATGTTTGGCTCATTGTTTCCTACCCCATCTTGTGTTTGGATTAAAACTCTATAAGAAGTTTTTTTCCAATTATACCCTTGAATTATTATGCAATTGGGTCAAGAAAGATAATTCCCTGCAGTCTTTTGTAACTTCTGGTTTTGGTACCTTTTTGGTACTTTAGGCAATAAACCTTTACCTTATAAACAAAAAAAAAATATTTTTCTATGGCTCCCTAACTTGCTAGGGGTTGAACAATTTTGTTGTCATGTTTGCTATTTTTTCTCTTGAATTATTTAAGGATAACTAGTTGTCATATTAATGAATTGATCACTCACAAAATGTCAATTTTCAATTTAAAAAAGATAAACCCCATCTACTTTTAAAACGAAAAGACGGTAAACAATAAGAAAATTAAATAAATCATCTACATTTATATATATATATATATATATATATATATATATACACACACACACACACATAGATGATTGAAGAAACAGCGTAAAAGAATCTATTTGGACTTTGTTCTTATGTGCTAAAAAAAGAAAAAAAGGTTCCCGTTAAACTTATCTTTTGAGACATTTTGTAGTGTATCGGCACTTCAGTTCCAAGTCGATATCATTCTACTATCTGTATGTGATCTTTGCTTCTAACTTGGAGGAACATTTTGTAACTTGATACCTTCAGCCCCCCTACATACAGTGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCTGCAGATGGAAGTATGGTATGCTCCCTTTCCATTTAGGAGATGTGGTTTGTCACCATAAATTTACAGGTTTTCGACTTGTAGTTCTTTTCTGTAGGTTTTCCGGTTGCGTGAAGGTGTGGGTGTGGCAACTAACAACGTTGCTGAATATAGAGGTGTAATCTTAGGGCTAAAATATGCTCTTGAGAAAGGTTTCAAACATGTAAAAGTTAAGGGTGACTCAAAACTCGTCTGCATGCAGGTCTTCTTTACTCTTCTTACTTCTGTTTTTGTTTTATCTTGATCTTCCCTTAAGCAAATTAGTCAATTATTTCTGCTTTTCCACTTTTAATATCCTGTCAGATTTATATATTCCAGTAACTTGTTGAAACAACTGAGTTCTAAAGCAATTGCTGAAGAACTTTTTCCGCTGATGTCCTAGCAATTAAGAGTGTCTGAGACATACTTATAAACCCCAGGCTACACAAAGATGCCCCAGAAAGTAGACCATTCCAAATAATGATAAAGTTGATCTCTGTTTATGGACTATGGTATTAAGTATTATCATCTTAAGTCATCCCTAGTTAGCCTGGGATGGAATAGCCGAAGTATTATCTTTAGTGTATACTCCACAGGTTGTATATGTATACTCCAAAATCACACAGTGGAATCCACACTGTGGATAACATGACTGGGTATGTTAGGGAGTACTAGATAGTTTAGAAGTGCACTCGAATAAGGTGAACTACAAAAACTAATTTGAGTTTATTATTATGTAATTCTGCATATAACTTTTTTCTTTTTATGAGGCAAAGTCGGTTCAGCTACATAAATCTAGAAATCAATTAATACTATATTACATTCAACACTTGACAGTGTTTTAAGAAAAGAAGAGAGAGAAATGATCCAAGGAAGCTTTTAAAAAGAAATGGGAAAAGCTAAGCATTATCCACCAAGTTTTGAATTGTGTCTCATTGATCCTCGGGGATTTCTGTTATATTAAAAAATGACAGAGCTAAGAGATGATGTGGCATAGAAGAATGAGCAGCAGTAGGCAAGCAGTTTGGATCCCCACATTGTCTTCGGAAAAATTGCTTCTGTTCATCCCAAAGTGAGCTGGAGAATAAAGGTATAGGTTAATTTGATTGTTTTGCAGAATGCCTAAGAGATTTTGCAGTGACAGATCTGGGAATGAGTATAAAAACCTTATATGATTCGGTATAAGCTTCCTTCTTGATGGCACCTTGCCCCTTCCATTCTAAGAGACACCCAAACCAGTTCAAAAGTGTAGCTATTCTTGCCCTTGTAACCTGTGTGACCTTATTCTGGGATCATGTGTTCTTGCGGTGCTATTTATATTGCATTAAGTATTAAGTTATTGCTGGAACTGCTTCAGGGATGATCTCTCATTCTTTAATTTTTTTTTTAATCATGGAACAGACTCAAGGAATCTGGAAATGCAAGAACCAGAACATGGCTGAGCTA</genome_strand>
        <mrna_strand>CAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCT.............................................................................................................................................................................................................................GTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCTGCAGATGGAAGTATG...............................................................................GTTTTCCGGTTGCGTGAAGGTGTGGGTGTGGCAACTAACAACGTTGCTGAATATAGAGGTGTAATCTTAGGGCTAAAATATGCTCTTGAGAAAGGTTTCAAACATGTAAAAGTTAAGGGTGACTCAAAACTCGTCTGCATGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAAGGAATCTGGAAATGCAAGAACCAGAACATGGCTGAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E456375" ref_strand="+" ref_description="SGN-E456375 [cSTS-29-I2]">
      <seq>caaataaacgcgttggagttggacacataaatgggggacgaaaaggatgctttttatgtcgtgcataaaggggatgtgatcgctgtctataagaacctgagtgatttacaagctctgctacgatcttctgttggtgaaccagccataagtgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="4795" stop="5529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5095" g_stop="5223" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5224" i_stop="5444" i_length="221">
            <donor d_prob="0.893" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5445" g_stop="5468" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="153" r_length="24" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E456375" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>153</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E456375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5095" e_stop="5223"/>
          <exon e_start="5445" e_stop="5468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCTGTACGTTTCCTTTAATGTTTTTTCTGCTTTTGGGCCTTAGACGGCCTTATCTGTTGGACTACTTTTTTTGGAGTCATGTAGAGCTCAAGTATAAGAAGAGTCTAATTATTACAGCTTTTTAACAATGATGAAGAAATAGAGCTTAGTTGATTTGAGCACAAGTAATAATATTATCAGATGCTCTTTTGATGTATTTTCTATTATTTTCTGTGATCTTTCAGGTTGGTGAACCAGCTATAAGTGTT</genome_strand>
        <mrna_strand>CAAATAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTGAGTGATTTACAAGCTCTGCTACGATCTTCT.............................................................................................................................................................................................................................GTTGGTGAACCAGCCATAAGTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E315770" ref_strand="+" ref_description="SGN-E315770 [cTOA-26-F13]">
      <seq>ttttacctaacaattctttgtatcaatacgtttaaattcttgtcattgtctgctttatctggatgttgacattcttggggtggggtgagggtggtgatttggtgggtggttagccttggaaagggcttgctcctatgttttgactttattctgctgctggccgaaactagtgaggatagtgatgcgtattggagctgatttggaaaataaaaggttgagaagtcctgattcggcaaccactgatccaagggggaccaagtgattcttaaatcaaactgtaagggcaaagtggaacattgttggttaacgttgcgcaaaagtccaaagttggaagatggtgacaaaatttatatgtaatctatgttgctgggattctccaagaaatagtgctgcacccatgctagatcctccaaaatgcactacttttgaaggattcgacatgctctcatcaacatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="7885" stop="8942"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8185" g_stop="8642" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="458" r_length="458" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E315770" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8185" e_stop="8642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTACCTAACAATTCTTTGTATCAATACGTTTAAATTCTTGTCATTGTCTGCTTTATCTGGATGTTGACATTCTTGGGGTGGGGTGAGGGTGGTGATTTGGTGGGTGGTTAGCCTTGGAAAGGGCTTGCTCCTATGTTTTGACTTTATTCTGCTGCTGGCCGAAACTAGTGAGGATAGTGATGCGTATTGGAGCTGATTTGGAAAATAAAAGGTTGAGAAGTCCTGATTCGGCAACCACTGATCCAAGGGGGACCAAGTGATTCTTAAATCAAACTGTAAGGGCAAAGTGGAACATTGTTGGTTAACGTTGCGCAAAAGTCCAAAGTTGGAAGATGGTGACAAAATTTATATGTAATCTATGTTGCTGGGATTCTCCAAGAAATAGTGCTGCACCCATGCTAGATCCTCCAAAATGCACTACTTTTGAAGGATTCGACATGCTCTCATCAACATTTT</genome_strand>
        <mrna_strand>TTTTACCTAACAATTCTTTGTATCAATACGTTTAAATTCTTGTCATTGTCTGCTTTATCTGGATGTTGACATTCTTGGGGTGGGGTGAGGGTGGTGATTTGGTGGGTGGTTAGCCTTGGAAAGGGCTTGCTCCTATGTTTTGACTTTATTCTGCTGCTGGCCGAAACTAGTGAGGATAGTGATGCGTATTGGAGCTGATTTGGAAAATAAAAGGTTGAGAAGTCCTGATTCGGCAACCACTGATCCAAGGGGGACCAAGTGATTCTTAAATCAAACTGTAAGGGCAAAGTGGAACATTGTTGGTTAACGTTGCGCAAAAGTCCAAAGTTGGAAGATGGTGACAAAATTTATATGTAATCTATGTTGCTGGGATTCTCCAAGAAATAGTGCTGCACCCATGCTAGATCCTCCAAAATGCACTACTTTTGAAGGATTCGACATGCTCTCATCAACATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E391914" ref_strand="+" ref_description="SGN-E391914 [TUS-24-E14](-)">
      <seq>gcgtgctgcagatggaagtatggttttccggttgcgtgaaggtgtgggtgtggcaactaacaacgttgctgaatatagaggtgtaatcttagggctaaaatatgctcttgagaaaggtttcaaacatgtaaaagttaagggtgactcaaaactcgtctgcatgcagactcaaggaatctggaaatgcaagaaccagaacatggctgagctatccaagattgtgaaagagcttaaagatcattttgtatcattccagatcaaccatatttacagagaattcaacactgaagctgatgcccaggcaaatttagccgtgtatcttaagagtggtgaatttcaagtggaatgtgacaagaaaacaacttaatattgtgaagtcaccaactaccccaacttgcttgggggattttgtgaaggatgaatgacactcaagaccgatgcataatggatcttctctggtcttgttttttttttttgtagatatataatctgaatcatctggattagagaaacttctgtttaggggcctgctcgaatccattattctcttctcacttgcaatggaaattaattagttctctaaagctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="9262" stop="42709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9562" g_stop="9583" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9584" i_stop="9662" i_length="79">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9663" g_stop="9806" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="166" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9807" i_stop="10984" i_length="1178">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10985" g_stop="11092" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="274" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11093" i_stop="11521" i_length="429">
            <donor d_prob="0.740" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11522" g_stop="11573" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="326" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11574" i_stop="11640" i_length="67">
            <donor d_prob="0.616" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11641" g_stop="11914" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="600" r_length="274" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E391914" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9562" e_stop="9583"/>
          <exon e_start="9663" e_stop="9806"/>
          <exon e_start="10985" e_stop="11092"/>
          <exon e_start="11522" e_stop="11573"/>
          <exon e_start="11641" e_stop="11914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTGCTGCAGATGGAAGTATGGTATGCTCCCTTTCCATTTAGGAGATGTGGTTTGTCACCATAAATTTACAGGTTTTCGACTTGTAGTTCTTTTCTGTAGGTTTTCCGGTTGCGTGAAGGTGTGGGTGTGGCAACTAACAACGTTGCTGAATATAGAGGTGTAATCTTAGGGCTAAAATATGCTCTTGAGAAAGGTTTCAAACATGTAAAAGTTAAGGGTGACTCAAAACTCGTCTGCATGCAGGTCTTCTTTACTCTTCTTACTTCTGTTTTTGTTTTATCTTGATCTTCCCTTAAGCAAATTAGTCAATTATTTCTGCTTTTCCACTTTTAATATCCTGTCAGATTTATATATTCCAGTAACTTGTTGAAACAACTGAGTTCTAAAGCAATTGCTGAAGAACTTTTTCCGCTGATGTCCTAGCAATTAAGAGTGTCTGAGACATACTTATAAACCCCAGGCTACACAAAGATGCCCCAGAAAGTAGACCATTCCAAATAATGATAAAGTTGATCTCTGTTTATGGACTATGGTATTAAGTATTATCATCTTAAGTCATCCCTAGTTAGCCTGGGATGGAATAGCCGAAGTATTATCTTTAGTGTATACTCCACAGGTTGTATATGTATACTCCAAAATCACACAGTGGAATCCACACTGTGGATAACATGACTGGGTATGTTAGGGAGTACTAGATAGTTTAGAAGTGCACTCGAATAAGGTGAACTACAAAAACTAATTTGAGTTTATTATTATGTAATTCTGCATATAACTTTTTTCTTTTTATGAGGCAAAGTCGGTTCAGCTACATAAATCTAGAAATCAATTAATACTATATTACATTCAACACTTGACAGTGTTTTAAGAAAAGAAGAGAGAGAAATGATCCAAGGAAGCTTTTAAAAAGAAATGGGAAAAGCTAAGCATTATCCACCAAGTTTTGAATTGTGTCTCATTGATCCTCGGGGATTTCTGTTATATTAAAAAATGACAGAGCTAAGAGATGATGTGGCATAGAAGAATGAGCAGCAGTAGGCAAGCAGTTTGGATCCCCACATTGTCTTCGGAAAAATTGCTTCTGTTCATCCCAAAGTGAGCTGGAGAATAAAGGTATAGGTTAATTTGATTGTTTTGCAGAATGCCTAAGAGATTTTGCAGTGACAGATCTGGGAATGAGTATAAAAACCTTATATGATTCGGTATAAGCTTCCTTCTTGATGGCACCTTGCCCCTTCCATTCTAAGAGACACCCAAACCAGTTCAAAAGTGTAGCTATTCTTGCCCTTGTAACCTGTGTGACCTTATTCTGGGATCATGTGTTCTTGCGGTGCTATTTATATTGCATTAAGTATTAAGTTATTGCTGGAACTGCTTCAGGGATGATCTCTCATTCTTTAATTTTTTTTTTAATCATGGAACAGACTCAAGGAATCTGGAAATGCAAGAACCAGAACATGGCTGAGCTATCCAAGATTGTGAAAGAGCTTAAAGATCATTTTGTATCATTCCAGATCAACCATATTTACAGAGTATGGCCAACTTTCTCCTCTTTTGCTAATTCAGAGCTTACTGAGCCTGTCTATCAGAATTTTGATCTTTGAAGTCCTTATTATATCTTGCATCTGCATCTTATTTCTGTGGTGAAAATGCTATAGTGTGTGTTATGTGTGGTCTCCTGTGACCAGAAAAGGTGCAAGTGGTGGGTGCTTGAATGTCATGTTTAATTTATGCAACAATGAGTTTCATCCATCTTGCTTATGAGCTCTATGAAATTGGTTTCATCACCTTGTTGCTAGAAGTGAATAGTCATGTTTGTCCGGTCTATTAATTCACTTAGTTTCGCATTTCTCTTCGTGAAACGTTTAAACTAAACTTGTACATATGTACTAAACTCATGATTGTTTAAAAAGCCATCTTCTCATCTCATTCTGAGGGGTTTTACTTGTTTGACATATCAGGAATTCAACACTGAAGCTGATGCCCAGGCAAATTTAGCCGTGTATCTTAAGAGTAAGGGTCTTTCTTTTGGTAGTTACATACATCTCTCTTTCCCGGTGATAAGAAAAATTTCTTGCAGGTGGTGAATTTCAAGTGGAATGTGACAAGAAAACAACTTAATATTGTGAAGTCACCAACTACCCCAACTTGCTTGGGGGATTTTGTGAAGGATGAATGACACTCAAGACCGATGCATAATGGATCTTCTCTGGTCTTGTTTTTTTTTTTTGTAGATATATAATCTGAATCATCTGGATTAGAGAAACTTCTGTTTAGGGGCCTGCTCGAATCCATTATTCTCTTCTCACTTGCAATGGAAATTAATTAGTTCTCTAAAGCTAACTATTCTAGCA</genome_strand>
        <mrna_strand>GCGTGCTGCAGATGGAAGTATG...............................................................................GTTTTCCGGTTGCGTGAAGGTGTGGGTGTGGCAACTAACAACGTTGCTGAATATAGAGGTGTAATCTTAGGGCTAAAATATGCTCTTGAGAAAGGTTTCAAACATGTAAAAGTTAAGGGTGACTCAAAACTCGTCTGCATGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAAGGAATCTGGAAATGCAAGAACCAGAACATGGCTGAGCTATCCAAGATTGTGAAAGAGCTTAAAGATCATTTTGTATCATTCCAGATCAACCATATTTACAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTCAACACTGAAGCTGATGCCCAGGCAAATTTAGCCGTGTATCTTAAGA...................................................................GTGGTGAATTTCAAGTGGAATGTGACAAGAAAACAACTTAATATTGTGAAGTCACCAACTACCCCAACTTGCTTGGGGGATTTTGTGAAGGATGAATGACACTCAAGACCGATGCATAATGGATCTTCTCTGGTCTTGTTTTTTTTTTTTGTAGATATATAATCTGAATCATCTGGATTAGAGAAACTTCTGTTTAGGGGCCTGCTCGAATCCATTATTCTCTTCTCACTTGCAATGGAAATTAATTAGTTCTCTAAAGCTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E578376" ref_strand="-" ref_description="SGN-E578376 [LE12DB02]">
      <seq>gcagactcaaggaatctggaaatgcaagaaccagaacatggctgagctatccaagattgtgaaagagcttaaagatcattttgtatcattccagatcacccatatttacagagaattcaaccctgaagctgatgcccaggcaaatttagccgtgtatcttaagagtggtgaatttcaagtggaatgtgacaagaaaacaacttaatattgtgaagtcaccaactaccccaacttgcttgggggattttgtgaaggatgaatgacactcaagaccgatgcataatggaccttctctggtattagtttttttttttgtagatatataatctgaatcatctggattagagaaacttctgtttaggggcctgctcgaatccattattctcttctcacttgcaatggaaattaattagttctctaaagctaactattctagccccctgaaaaaaaaaaaaaaaaaaaaacctgcagcccgggggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="10682" stop="62405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10981" g_stop="11092" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11093" i_stop="11521" i_length="429">
            <donor d_prob="0.740" d_score="0.98"/>
            <acceptor a_prob="0.917" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11522" g_stop="11573" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="164" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11574" i_stop="11640" i_length="67">
            <donor d_prob="0.616" d_score="0.98"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11641" g_stop="11916" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="440" r_length="276" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11917" i_stop="12137" i_length="221">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12138" g_stop="12165" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="467" r_length="27" r_score="0.786"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12166" i_stop="13446" i_length="1281">
            <donor d_prob="0.949" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13447" g_stop="13460" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="481" r_length="14" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E578376" ref_strand="-">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E578376" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="10981" e_stop="11092"/>
          <exon e_start="11522" e_stop="11573"/>
          <exon e_start="11641" e_stop="11916"/>
          <exon e_start="12138" e_stop="12165"/>
          <exon e_start="13447" e_stop="13460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGACTCAAGGAATCTGGAAATGCAAGAACCAGAACATGGCTGAGCTATCCAAGATTGTGAAAGAGCTTAAAGATCATTTTGTATCATTCCAGATCAACCATATTTACAGAGTATGGCCAACTTTCTCCTCTTTTGCTAATTCAGAGCTTACTGAGCCTGTCTATCAGAATTTTGATCTTTGAAGTCCTTATTATATCTTGCATCTGCATCTTATTTCTGTGGTGAAAATGCTATAGTGTGTGTTATGTGTGGTCTCCTGTGACCAGAAAAGGTGCAAGTGGTGGGTGCTTGAATGTCATGTTTAATTTATGCAACAATGAGTTTCATCCATCTTGCTTATGAGCTCTATGAAATTGGTTTCATCACCTTGTTGCTAGAAGTGAATAGTCATGTTTGTCCGGTCTATTAATTCACTTAGTTTCGCATTTCTCTTCGTGAAACGTTTAAACTAAACTTGTACATATGTACTAAACTCATGATTGTTTAAAAAGCCATCTTCTCATCTCATTCTGAGGGGTTTTACTTGTTTGACATATCAGGAATTCAACACTGAAGCTGATGCCCAGGCAAATTTAGCCGTGTATCTTAAGAGTAAGGGTCTTTCTTTTGGTAGTTACATACATCTCTCTTTCCCGGTGATAAGAAAAATTTCTTGCAGGTGGTGAATTTCAAGTGGAATGTGACAAGAAAACAACTTAATATTGTGAAGTCACCAACTACCCCAACTTGCTTGGGGGATTTTGTGAAGGATGAATGACACTCAAGACCGATGCATAATGGATCTTCTCTGGTCTTGTTTTTTTTTTTTGTAGATATATAATCTGAATCATCTGGATTAGAGAAACTTCTGTTTAGGGGCCTGCTCGAATCCATTATTCTCTTCTCACTTGCAATGGAAATTAATTAGTTCTCTAAAGCTAACTATTCTAGCACTTTGAAATCTGTCTTGCTGTTACTCTTCCCCAGTATACATACTTTTTAAATTTAAATGGGATATCTTGGATTGCCGTTTCTACAACTGGGTTTCAACAATGTCAATAAAACAAGCATTATATTTAAACTAACAATATCACGATAACAACCATTCAAACGAGTGATTTCTTGAGTGAGAATAAATATACTACTTTAGTAAAATTGGAGAAGATATCACTTTAGCTCAAAAAAAAAATAAAAAAACTACATTGTAAGACTAAAATTGTTAGTTATTTTTAATGTTACTCTATTTTTTAAAAATAGTTGTGATAAATACAAATAATTGAATAAATTATACTTATATTTATTATATAAAAATATCATAGGATGAAATAATCTACTATCAGTAGTATAAATTTACTGACTTCAACATTATTTTGTCCCAAATATCCATAGGTTCCTTCCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAGGTTAACCCCTTCTTTTCTATTTTGGTAAAGTTTCTAGTTTTTTCATTAAAGAACTCAACCAATGTGAACCCGAAAGGGTTGCTGTAGGTTAATAACTAGTGTAGGAATAGTTAATTGTGGTTGTAATGAATTTCAGTGGTTTGAACTTGGTTCTTGTGAAGTTTCTAATATTGTCAAAAAAATCAACCAGTGTGAATTTCTGATTAAAGTGAAGAGGGTTGCAGTAGGTTAATGCCTAGTGTGTACGAATAGTTTATCTGGTAGTAATGAATTTCAGTCTGTGCTCATATTGGTATGAAATGGGTTCTTGTGAGGTGAATTTTATCCAAAAATTCTAAGTAAGTGAATTCGCTAAGTTAGGATAATGGAGGAGGAGGAGGTTAATTCTCAGTGTAAGGCTGTAAGCATAGTAAATTTATTAAGAATTCTGATAGTACTGGTATTTGATAGTGCTTGCTCATATTGGACTATTGGAGTGAAATGGGTCGGATAAGAACGCATATACAGGATTGGTATAGCCCAACTCCAACTAGTTTGGCAGTGAGGTTTAGTTAATTTATTGATTGATTGTCTGATTAGTGCTCAATGTGCTAGTTTTGCTTTATTTTTCTTTCAAATTGTTAGTTGTCTGTAACCCTTAAACTTCTTGTGGATTCTTCTGTGAATGGTAAACTGAACTTATACCTTTCTTATCACAGGCAGAAGGAACAAT</genome_strand>
        <mrna_strand>GCAGACTCAAGGAATCTGGAAATGCAAGAACCAGAACATGGCTGAGCTATCCAAGATTGTGAAAGAGCTTAAAGATCATTTTGTATCATTCCAGATCACCCATATTTACAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTCAACCCTGAAGCTGATGCCCAGGCAAATTTAGCCGTGTATCTTAAGA...................................................................GTGGTGAATTTCAAGTGGAATGTGACAAGAAAACAACTTAATATTGTGAAGTCACCAACTACCCCAACTTGCTTGGGGGATTTTGTGAAGGATGAATGACACTCAAGACCGATGCATAATGGACCTTCTCTGGTATTAGTTTTTTTTTTTGTAGATATATAATCTGAATCATCTGGATTAGAGAAACTTCTGTTTAGGGGCCTGCTCGAATCCATTATTCTCTTCTCACTTGCAATGGAAATTAATTAGTTCTCTAAAGCTAACTATTCTAGCCCC.............................................................................................................................................................................................................................CTGAAAAAAAAAAAAAAAAAAAAAC-CT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCCCGGGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E269900" ref_strand="-" ref_description="SGN-E269900 [cLEM-17-L16]">
      <seq>caagaaccagaacatggttgagctatccaagattgtgaaagagcttaaagatcattttgtatcattccagatcaaccatatttacagagaattcaacactgaagctgatgcccaggcaaatttagccgtgtatcttaagagtggtgaatttcaagtggaatgtgacaagaaaacaacttaatattgtgaagtcaccaactaccccaacttgcttgggggattttgtgaaggatgaatgacactcaagaccgatgcataatggatcttctctggtcttgttttttttttttgtagatatataatctgaatcatctggattagagaaacttctgtttaggggcctgctcgaatccattattctcttctcacttgcaatggaaattaattagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="10705" stop="12192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11005" g_stop="11092" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11093" i_stop="11521" i_length="429">
            <donor d_prob="0.740" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11522" g_stop="11573" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="140" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11574" i_stop="11640" i_length="67">
            <donor d_prob="0.616" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11641" g_stop="11892" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="392" r_length="252" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E269900" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269900" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="11005" e_stop="11092"/>
          <exon e_start="11522" e_stop="11573"/>
          <exon e_start="11641" e_stop="11892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAACCAGAACATGGCTGAGCTATCCAAGATTGTGAAAGAGCTTAAAGATCATTTTGTATCATTCCAGATCAACCATATTTACAGAGTATGGCCAACTTTCTCCTCTTTTGCTAATTCAGAGCTTACTGAGCCTGTCTATCAGAATTTTGATCTTTGAAGTCCTTATTATATCTTGCATCTGCATCTTATTTCTGTGGTGAAAATGCTATAGTGTGTGTTATGTGTGGTCTCCTGTGACCAGAAAAGGTGCAAGTGGTGGGTGCTTGAATGTCATGTTTAATTTATGCAACAATGAGTTTCATCCATCTTGCTTATGAGCTCTATGAAATTGGTTTCATCACCTTGTTGCTAGAAGTGAATAGTCATGTTTGTCCGGTCTATTAATTCACTTAGTTTCGCATTTCTCTTCGTGAAACGTTTAAACTAAACTTGTACATATGTACTAAACTCATGATTGTTTAAAAAGCCATCTTCTCATCTCATTCTGAGGGGTTTTACTTGTTTGACATATCAGGAATTCAACACTGAAGCTGATGCCCAGGCAAATTTAGCCGTGTATCTTAAGAGTAAGGGTCTTTCTTTTGGTAGTTACATACATCTCTCTTTCCCGGTGATAAGAAAAATTTCTTGCAGGTGGTGAATTTCAAGTGGAATGTGACAAGAAAACAACTTAATATTGTGAAGTCACCAACTACCCCAACTTGCTTGGGGGATTTTGTGAAGGATGAATGACACTCAAGACCGATGCATAATGGATCTTCTCTGGTCTTGTTTTTTTTTTTTGTAGATATATAATCTGAATCATCTGGATTAGAGAAACTTCTGTTTAGGGGCCTGCTCGAATCCATTATTCTCTTCTCACTTGCAATGGAAATTAATTAGTTC</genome_strand>
        <mrna_strand>CAAGAACCAGAACATGGTTGAGCTATCCAAGATTGTGAAAGAGCTTAAAGATCATTTTGTATCATTCCAGATCAACCATATTTACAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTCAACACTGAAGCTGATGCCCAGGCAAATTTAGCCGTGTATCTTAAGA...................................................................GTGGTGAATTTCAAGTGGAATGTGACAAGAAAACAACTTAATATTGTGAAGTCACCAACTACCCCAACTTGCTTGGGGGATTTTGTGAAGGATGAATGACACTCAAGACCGATGCATAATGGATCTTCTCTGGTCTTGTTTTTTTTTTTTGTAGATATATAATCTGAATCATCTGGATTAGAGAAACTTCTGTTTAGGGGCCTGCTCGAATCCATTATTCTCTTCTCACTTGCAATGGAAATTAATTAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E551826" ref_strand="+" ref_description="SGN-E551826 [cTSB-1-P19]">
      <seq>gttccttccatttgtaatctggcttctggataagagtgaaaaatcactctgaggaatttgcgtcggaaaaaaaaaatatggcgaccgtctcagcattttccgtttgtagagccaaatctcattctcgaattccccattcttcatctaatgcaattccccagcttttcccaatgcaatttcttcggtgtcaaagcaacaggagcattggcggtggttattcttgctcttcaagttcggtgaaagcgaaggtacctttgagaactaccaggatatgttctgcaactgaggaagatggtgctactgctgttgccgaaaaagaatctgctgctcccactacatctgatcaaactgtttctgtttccgtctccccttccgacgttctaactatgttctttcaggcagaaggaacaatgaatgaagctgctattccttccgtgactaactctttagaggatattgaaggcattacaggtctcaaaattcaagttgtcgagggcattgcaagtgtcgagttaacaaagcaaacgacaatacaagctacaggggtggcttcaagtttggttgaaacaatacaaggttcaggcttcaagttgcaaacattgaatctgagctttcaggatgaagaagatattagctaagtggtggcttgtagaattcagagacatgataggctgatatctttcacgggcatcctgagagatctctgtttatttgtatgccagtagtttcagtaagcctatatctgtaacatttttgtgttatgcagttctttgatctttttcttccttagcatatgttcctttccgcaacttataaaaatacttgtgaattactaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="12051" stop="15699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12351" g_stop="12748" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="398" r_length="398" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12749" i_stop="13446" i_length="698">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13447" g_stop="13500" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="452" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13501" i_stop="14056" i_length="556">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14057" g_stop="14116" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="512" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14117" i_stop="15073" i_length="957">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15074" g_stop="15399" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="838" r_length="326" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E551826" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>838</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551826" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12351" e_stop="12748"/>
          <exon e_start="13447" e_stop="13500"/>
          <exon e_start="14057" e_stop="14116"/>
          <exon e_start="15074" e_stop="15399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCTTCCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAGGTTAACCCCTTCTTTTCTATTTTGGTAAAGTTTCTAGTTTTTTCATTAAAGAACTCAACCAATGTGAACCCGAAAGGGTTGCTGTAGGTTAATAACTAGTGTAGGAATAGTTAATTGTGGTTGTAATGAATTTCAGTGGTTTGAACTTGGTTCTTGTGAAGTTTCTAATATTGTCAAAAAAATCAACCAGTGTGAATTTCTGATTAAAGTGAAGAGGGTTGCAGTAGGTTAATGCCTAGTGTGTACGAATAGTTTATCTGGTAGTAATGAATTTCAGTCTGTGCTCATATTGGTATGAAATGGGTTCTTGTGAGGTGAATTTTATCCAAAAATTCTAAGTAAGTGAATTCGCTAAGTTAGGATAATGGAGGAGGAGGAGGTTAATTCTCAGTGTAAGGCTGTAAGCATAGTAAATTTATTAAGAATTCTGATAGTACTGGTATTTGATAGTGCTTGCTCATATTGGACTATTGGAGTGAAATGGGTCGGATAAGAACGCATATACAGGATTGGTATAGCCCAACTCCAACTAGTTTGGCAGTGAGGTTTAGTTAATTTATTGATTGATTGTCTGATTAGTGCTCAATGTGCTAGTTTTGCTTTATTTTTCTTTCAAATTGTTAGTTGTCTGTAACCCTTAAACTTCTTGTGGATTCTTCTGTGAATGGTAAACTGAACTTATACCTTTCTTATCACAGGCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAGGTAAATTGAGTGTGTAAAATTCAAAGCTTCTTCTGGTACATGCTAATTTGTTGACACTTCACAAAACACATTACTTGTCTGCTGCATTTGAGATACAATGTAGTAGCAGTTGCAGGGACTCTGAGTTTTTATTTTTCTGTGTAATATTAATGCTACTTGTGAATCACCAGAAGACTCGCTATTACATTGAAGAGTGAAATAAACAACACAGGTTGTTTACACTTTAAAGGACAAATTAAAGAAAGGAAAACGTTCTGATCTTTCTGAGGGATTTAAACTCTTTTTTTCTTGGAACTAGGCATATCTGAGATCTTATAATCTAGAATCAAAGAATCAGATACAGATATTCATCTGATTCTAGTTTTTCAGAAGCTGCAAGAGAGAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTTACAGGAAATTTCTTTGTAGAAAGTTTACAGCTCAATCAGCATAATGCACCTTAGAGATATATTAAAGTACTAAATTCTGAAGCATGCTTTAGGTTCCTTGTAGTTTCCTACATTCAATATGCAATATAGTGGACAACTTCCAGGTGGACTATCTTGTGCTGCCTTTTTGTGTTTGGAGTTTCTCTATAAATGATAGGAACAGTCTATCTAAATGAACGATATCCTTTAACTTTTCATGGTGAGGGAAAAATAAACTTTTAGTTCTTCAAAAGTAACCTAAAAAATTATTATTTGTGAAAAGAAGGCTGTTTAAGTACTTATTACATTTTAATCTTTAAAATATTCTGTAGAAAATCTAACAGTGTCAAAGCGCTATCCTTTGAAGTTTCTATTTCCCCTAGCATACAAATAACCTCAAATCCCAAAAAGTGTAAGAATTTCATTTACATAGATCAAGCATATAAAATTGGAAAGTAAAGTTGCCATCTATTTCCATCAGGATTCAATTCTGAGTTCCTTATTTCAGCTTATTGCCTGATCTGCATATTAGTATCCTTGGTGGCATGTAAGTGTCTAGGATCTTGATCATCTAATTGTGCATCCAATATAAGACCTTAGGAAATTGATGAGATTAGGGCTAAAGGTAAGAAAGAACTCCCAGTGTTGTCCTAAATTAGGAGAAATCACCTTCCCTTCTTATGAATAGAGAACGAGAGAGAACCATTATTGTGGTGAAAATTTTCCTCTAAACTTACTGTTACCTAAGAATATAAGAAGCATTTAAGGACATATCAGATGTCTCTATTTTCTTCATTCAGAACTTCAATAAGGCATTTGAAGAACCAAGAAATGAAACATGGTATGTCCTTGGTTCAGTGTTAACCTCTCTTTTTATTTGATGTAGTTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTTGGTTGAAACAATACAAGGTTCAGGCTTCAAGTTGCAAACATTGAATCTGAGCTTTCAGGATGAAGAAGATATTAGCTAAGTGGTGGCTTGTAGAATTCAGAGACATGATAGGCTGATATCTTTCACGGGCATCCTGAGAGATCTCTGTTTATTTGTATGCCAGTAGTTTCAGTAAGCCTATATCTGTAACATTTTTGTGTTATGCAGTTCTTTGATCTTTTTCTTCCTTAGCATATGTTCCTTTCCGCAACTTATAAAAATACTTGTGAATTACTAATG</genome_strand>
        <mrna_strand>GTTCCTTCCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAAAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTTGGTTGAAACAATACAAGGTTCAGGCTTCAAGTTGCAAACATTGAATCTGAGCTTTCAGGATGAAGAAGATATTAGCTAAGTGGTGGCTTGTAGAATTCAGAGACATGATAGGCTGATATCTTTCACGGGCATCCTGAGAGATCTCTGTTTATTTGTATGCCAGTAGTTTCAGTAAGCCTATATCTGTAACATTTTTGTGTTATGCAGTTCTTTGATCTTTTTCTTCCTTAGCATATGTTCCTTTCCGCAACTTATAAAAATACTTGTGAATTACTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E716572" ref_strand="+" ref_description="SGN-E716572 [FB17BG09]">
      <seq>gttccttccatttgtaatctggcttctggataagagtgaaaaatcactctgaggaatttgcgtcggaaaaaaaaaatatggcgaccgtctcagcattttccgtttgtagagccaaatctcattctcgaattccccattcttcatctaatgcaattccccagcttttcccaatgcaatttcttcggtgtcaaagcaacaggagcattggcgggggttattcttgctcttcaagttcggtgaaagcgaaggtacctttgaaaactaccaggatatgttctgcaactgaggaaaatggtgctactgctgttgccgaaaaaaaatctgctgctcccactacatctgatcaaactgtttctgtttccgtctccccttccgacgttctaactatgttctttcaggcagaaggaacaatgaatgaagctgctattccttccgtgactaactctttaaaggatattgaaggcattacaggtctcaaaattcaagttgtcgagggcattgcaagtgtcgagttaacaaagcaaacgacaatacaagctacaggggtggcttcaagtttggttgaaacaatacaaggttcaggcttcaagttgcaaacattgaatctgagctttcaggatgaagaagatattagctaagtggtggcttgtagaattcagagacatgataggctgatatctttcacgggcatcctgagagatctctgtttatttgtatgccagtagtttcagtaagcctatatctgtaaacatttttgtgttatgccagttctttgatctttttcttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="12051" stop="15647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12351" g_stop="12748" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="398" r_length="398" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12749" i_stop="13446" i_length="698">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13447" g_stop="13500" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="452" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13501" i_stop="14056" i_length="556">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14057" g_stop="14116" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="512" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14117" i_stop="15073" i_length="957">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15074" g_stop="15347" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="788" r_length="276" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E716572" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12351" e_stop="12748"/>
          <exon e_start="13447" e_stop="13500"/>
          <exon e_start="14057" e_stop="14116"/>
          <exon e_start="15074" e_stop="15347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCTTCCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAGGTTAACCCCTTCTTTTCTATTTTGGTAAAGTTTCTAGTTTTTTCATTAAAGAACTCAACCAATGTGAACCCGAAAGGGTTGCTGTAGGTTAATAACTAGTGTAGGAATAGTTAATTGTGGTTGTAATGAATTTCAGTGGTTTGAACTTGGTTCTTGTGAAGTTTCTAATATTGTCAAAAAAATCAACCAGTGTGAATTTCTGATTAAAGTGAAGAGGGTTGCAGTAGGTTAATGCCTAGTGTGTACGAATAGTTTATCTGGTAGTAATGAATTTCAGTCTGTGCTCATATTGGTATGAAATGGGTTCTTGTGAGGTGAATTTTATCCAAAAATTCTAAGTAAGTGAATTCGCTAAGTTAGGATAATGGAGGAGGAGGAGGTTAATTCTCAGTGTAAGGCTGTAAGCATAGTAAATTTATTAAGAATTCTGATAGTACTGGTATTTGATAGTGCTTGCTCATATTGGACTATTGGAGTGAAATGGGTCGGATAAGAACGCATATACAGGATTGGTATAGCCCAACTCCAACTAGTTTGGCAGTGAGGTTTAGTTAATTTATTGATTGATTGTCTGATTAGTGCTCAATGTGCTAGTTTTGCTTTATTTTTCTTTCAAATTGTTAGTTGTCTGTAACCCTTAAACTTCTTGTGGATTCTTCTGTGAATGGTAAACTGAACTTATACCTTTCTTATCACAGGCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAGGTAAATTGAGTGTGTAAAATTCAAAGCTTCTTCTGGTACATGCTAATTTGTTGACACTTCACAAAACACATTACTTGTCTGCTGCATTTGAGATACAATGTAGTAGCAGTTGCAGGGACTCTGAGTTTTTATTTTTCTGTGTAATATTAATGCTACTTGTGAATCACCAGAAGACTCGCTATTACATTGAAGAGTGAAATAAACAACACAGGTTGTTTACACTTTAAAGGACAAATTAAAGAAAGGAAAACGTTCTGATCTTTCTGAGGGATTTAAACTCTTTTTTTCTTGGAACTAGGCATATCTGAGATCTTATAATCTAGAATCAAAGAATCAGATACAGATATTCATCTGATTCTAGTTTTTCAGAAGCTGCAAGAGAGAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTTACAGGAAATTTCTTTGTAGAAAGTTTACAGCTCAATCAGCATAATGCACCTTAGAGATATATTAAAGTACTAAATTCTGAAGCATGCTTTAGGTTCCTTGTAGTTTCCTACATTCAATATGCAATATAGTGGACAACTTCCAGGTGGACTATCTTGTGCTGCCTTTTTGTGTTTGGAGTTTCTCTATAAATGATAGGAACAGTCTATCTAAATGAACGATATCCTTTAACTTTTCATGGTGAGGGAAAAATAAACTTTTAGTTCTTCAAAAGTAACCTAAAAAATTATTATTTGTGAAAAGAAGGCTGTTTAAGTACTTATTACATTTTAATCTTTAAAATATTCTGTAGAAAATCTAACAGTGTCAAAGCGCTATCCTTTGAAGTTTCTATTTCCCCTAGCATACAAATAACCTCAAATCCCAAAAAGTGTAAGAATTTCATTTACATAGATCAAGCATATAAAATTGGAAAGTAAAGTTGCCATCTATTTCCATCAGGATTCAATTCTGAGTTCCTTATTTCAGCTTATTGCCTGATCTGCATATTAGTATCCTTGGTGGCATGTAAGTGTCTAGGATCTTGATCATCTAATTGTGCATCCAATATAAGACCTTAGGAAATTGATGAGATTAGGGCTAAAGGTAAGAAAGAACTCCCAGTGTTGTCCTAAATTAGGAGAAATCACCTTCCCTTCTTATGAATAGAGAACGAGAGAGAACCATTATTGTGGTGAAAATTTTCCTCTAAACTTACTGTTACCTAAGAATATAAGAAGCATTTAAGGACATATCAGATGTCTCTATTTTCTTCATTCAGAACTTCAATAAGGCATTTGAAGAACCAAGAAATGAAACATGGTATGTCCTTGGTTCAGTGTTAACCTCTCTTTTTATTTGATGTAGTTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTTGGTTGAAACAATACAAGGTTCAGGCTTCAAGTTGCAAACATTGAATCTGAGCTTTCAGGATGAAGAAGATATTAGCTAAGTGGTGGCTTGTAGAATTCAGAGACATGATAGGCTGATATCTTTCACGGGCATCCTGAGAGATCTCTGTTTATTTGTATGCCAGTAGTTTCAGTAAGCCTATATCTGT-AACATTTTTGTGTTATG-CAGTTCTTTGATCTTTTTCTTCC</genome_strand>
        <mrna_strand>GTTCCTTCCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGGGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAAAACTACCAGGATATGTTCTGCAACTGAGGAAAATGGTGCTACTGCTGTTGCCGAAAAAAAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTTGGTTGAAACAATACAAGGTTCAGGCTTCAAGTTGCAAACATTGAATCTGAGCTTTCAGGATGAAGAAGATATTAGCTAAGTGGTGGCTTGTAGAATTCAGAGACATGATAGGCTGATATCTTTCACGGGCATCCTGAGAGATCTCTGTTTATTTGTATGCCAGTAGTTTCAGTAAGCCTATATCTGTAAACATTTTTGTGTTATGCCAGTTCTTTGATCTTTTTCTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347594" ref_strand="+" ref_description="SGN-E347594 [cTOF-26-O22]">
      <seq>ttccttccatttgtaatctggcttctggataagagtgaaaaatcactctgaggaatttgcgtcggaaaaaaaaaatatggcgaccgtctcagcattttccgtttgtagagccaaatctcattctcgaattccccattcttcatctaatgcaattccccagcttttcccaatgcaatttcttcggtgtcaaagcaacaggagcattggcggtggttattcttgctcttcaagttcggtgaaagcgaaggtacctttgagaactaccaggatatgttctgcaactgaggaagatggtgctactgctgttgccgaagaagaatctgctgctcccactacatctgatcaaactgtttctgtttccgtctccccttccgacgttctaactatgttctttcaggcagaaggaacaatgaatgaagctgctattccttccgtgactaactctttagaggatattgaaggcattacaggtctcaaaattcaagttgtcgagggcattgcaagtgtcgagttaacaaagcaaacgacaatacaagctacaggggtggcttcaagtttggttgaaacaatacaaggttcaggcttcaagttgcaaacattgaatctgagctttcaggatgaagaagatattagctaagtggtggcttgtagaattcagagacatgataggctgatatctttcacgggcatcctgagagatctctgtttatttgtatgccagtagtttcagtaagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="12052" stop="15598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12352" g_stop="12748" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12749" i_stop="13446" i_length="698">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13447" g_stop="13500" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="451" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13501" i_stop="14056" i_length="556">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14057" g_stop="14116" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="511" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14117" i_stop="15073" i_length="957">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15074" g_stop="15298" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="736" r_length="225" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E347594" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12352" e_stop="12748"/>
          <exon e_start="13447" e_stop="13500"/>
          <exon e_start="14057" e_stop="14116"/>
          <exon e_start="15074" e_stop="15298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTCCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAGGTTAACCCCTTCTTTTCTATTTTGGTAAAGTTTCTAGTTTTTTCATTAAAGAACTCAACCAATGTGAACCCGAAAGGGTTGCTGTAGGTTAATAACTAGTGTAGGAATAGTTAATTGTGGTTGTAATGAATTTCAGTGGTTTGAACTTGGTTCTTGTGAAGTTTCTAATATTGTCAAAAAAATCAACCAGTGTGAATTTCTGATTAAAGTGAAGAGGGTTGCAGTAGGTTAATGCCTAGTGTGTACGAATAGTTTATCTGGTAGTAATGAATTTCAGTCTGTGCTCATATTGGTATGAAATGGGTTCTTGTGAGGTGAATTTTATCCAAAAATTCTAAGTAAGTGAATTCGCTAAGTTAGGATAATGGAGGAGGAGGAGGTTAATTCTCAGTGTAAGGCTGTAAGCATAGTAAATTTATTAAGAATTCTGATAGTACTGGTATTTGATAGTGCTTGCTCATATTGGACTATTGGAGTGAAATGGGTCGGATAAGAACGCATATACAGGATTGGTATAGCCCAACTCCAACTAGTTTGGCAGTGAGGTTTAGTTAATTTATTGATTGATTGTCTGATTAGTGCTCAATGTGCTAGTTTTGCTTTATTTTTCTTTCAAATTGTTAGTTGTCTGTAACCCTTAAACTTCTTGTGGATTCTTCTGTGAATGGTAAACTGAACTTATACCTTTCTTATCACAGGCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAGGTAAATTGAGTGTGTAAAATTCAAAGCTTCTTCTGGTACATGCTAATTTGTTGACACTTCACAAAACACATTACTTGTCTGCTGCATTTGAGATACAATGTAGTAGCAGTTGCAGGGACTCTGAGTTTTTATTTTTCTGTGTAATATTAATGCTACTTGTGAATCACCAGAAGACTCGCTATTACATTGAAGAGTGAAATAAACAACACAGGTTGTTTACACTTTAAAGGACAAATTAAAGAAAGGAAAACGTTCTGATCTTTCTGAGGGATTTAAACTCTTTTTTTCTTGGAACTAGGCATATCTGAGATCTTATAATCTAGAATCAAAGAATCAGATACAGATATTCATCTGATTCTAGTTTTTCAGAAGCTGCAAGAGAGAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTTACAGGAAATTTCTTTGTAGAAAGTTTACAGCTCAATCAGCATAATGCACCTTAGAGATATATTAAAGTACTAAATTCTGAAGCATGCTTTAGGTTCCTTGTAGTTTCCTACATTCAATATGCAATATAGTGGACAACTTCCAGGTGGACTATCTTGTGCTGCCTTTTTGTGTTTGGAGTTTCTCTATAAATGATAGGAACAGTCTATCTAAATGAACGATATCCTTTAACTTTTCATGGTGAGGGAAAAATAAACTTTTAGTTCTTCAAAAGTAACCTAAAAAATTATTATTTGTGAAAAGAAGGCTGTTTAAGTACTTATTACATTTTAATCTTTAAAATATTCTGTAGAAAATCTAACAGTGTCAAAGCGCTATCCTTTGAAGTTTCTATTTCCCCTAGCATACAAATAACCTCAAATCCCAAAAAGTGTAAGAATTTCATTTACATAGATCAAGCATATAAAATTGGAAAGTAAAGTTGCCATCTATTTCCATCAGGATTCAATTCTGAGTTCCTTATTTCAGCTTATTGCCTGATCTGCATATTAGTATCCTTGGTGGCATGTAAGTGTCTAGGATCTTGATCATCTAATTGTGCATCCAATATAAGACCTTAGGAAATTGATGAGATTAGGGCTAAAGGTAAGAAAGAACTCCCAGTGTTGTCCTAAATTAGGAGAAATCACCTTCCCTTCTTATGAATAGAGAACGAGAGAGAACCATTATTGTGGTGAAAATTTTCCTCTAAACTTACTGTTACCTAAGAATATAAGAAGCATTTAAGGACATATCAGATGTCTCTATTTTCTTCATTCAGAACTTCAATAAGGCATTTGAAGAACCAAGAAATGAAACATGGTATGTCCTTGGTTCAGTGTTAACCTCTCTTTTTATTTGATGTAGTTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTTGGTTGAAACAATACAAGGTTCAGGCTTCAAGTTGCAAACATTGAATCTGAGCTTTCAGGATGAAGAAGATATTAGCTAAGTGGTGGCTTGTAGAATTCAGAGACATGATAGGCTGATATCTTTCACGGGCATCCTGAGAGATCTCTGTTTATTTGTATGCCAGTAGTTTCAGTAAGCC</genome_strand>
        <mrna_strand>TTCCTTCCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTTGGTTGAAACAATACAAGGTTCAGGCTTCAAGTTGCAAACATTGAATCTGAGCTTTCAGGATGAAGAAGATATTAGCTAAGTGGTGGCTTGTAGAATTCAGAGACATGATAGGCTGATATCTTTCACGGGCATCCTGAGAGATCTCTGTTTATTTGTATGCCAGTAGTTTCAGTAAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347824" ref_strand="+" ref_description="SGN-E347824 [cTOF-26-H4]">
      <seq>ttccttccatttgtaatctggcttctggataagagtgaaaaatcactctgaggaatttgcgtcggaaaaaaaaaatatggcgaccgtctcagcattttccgtttgtagagccaaatctcattctcgaattccccattcttcatctaatgcaattccccagcttttcccaatgcaatttcttcggtgtcaaagcaacaggagcattggcggtggttattcttgctcttcaagttcggtgaaagcgaaggtacctttgagaactaccaggatatgttctgcaactgaggaagatggtgctactgctgttgccgaagaagaatctgctgctcccactacatctgatcaaactgtttctgtttccgtctccccttccgacgttctaactatgttctttcaggcagaaggaacaatgaatgaagctgctattccttccgtgactaactctttagaggatattgaaggcattacaggtctcaaaattcaagttgtcgagggcattgcaagtgtcgagttaacaaagcaaacgacaatacaagctacaggggtggcttcaagtttggttgaaacaatacaaggttcangcttcaagttgcaaacattgaatctgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="12052" stop="15471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12352" g_stop="12748" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12749" i_stop="13446" i_length="698">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13447" g_stop="13500" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="451" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13501" i_stop="14056" i_length="556">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14057" g_stop="14116" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="511" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14117" i_stop="15073" i_length="957">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15074" g_stop="15171" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="609" r_length="98" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E347824" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347824" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12352" e_stop="12748"/>
          <exon e_start="13447" e_stop="13500"/>
          <exon e_start="14057" e_stop="14116"/>
          <exon e_start="15074" e_stop="15171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTCCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAGGTTAACCCCTTCTTTTCTATTTTGGTAAAGTTTCTAGTTTTTTCATTAAAGAACTCAACCAATGTGAACCCGAAAGGGTTGCTGTAGGTTAATAACTAGTGTAGGAATAGTTAATTGTGGTTGTAATGAATTTCAGTGGTTTGAACTTGGTTCTTGTGAAGTTTCTAATATTGTCAAAAAAATCAACCAGTGTGAATTTCTGATTAAAGTGAAGAGGGTTGCAGTAGGTTAATGCCTAGTGTGTACGAATAGTTTATCTGGTAGTAATGAATTTCAGTCTGTGCTCATATTGGTATGAAATGGGTTCTTGTGAGGTGAATTTTATCCAAAAATTCTAAGTAAGTGAATTCGCTAAGTTAGGATAATGGAGGAGGAGGAGGTTAATTCTCAGTGTAAGGCTGTAAGCATAGTAAATTTATTAAGAATTCTGATAGTACTGGTATTTGATAGTGCTTGCTCATATTGGACTATTGGAGTGAAATGGGTCGGATAAGAACGCATATACAGGATTGGTATAGCCCAACTCCAACTAGTTTGGCAGTGAGGTTTAGTTAATTTATTGATTGATTGTCTGATTAGTGCTCAATGTGCTAGTTTTGCTTTATTTTTCTTTCAAATTGTTAGTTGTCTGTAACCCTTAAACTTCTTGTGGATTCTTCTGTGAATGGTAAACTGAACTTATACCTTTCTTATCACAGGCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAGGTAAATTGAGTGTGTAAAATTCAAAGCTTCTTCTGGTACATGCTAATTTGTTGACACTTCACAAAACACATTACTTGTCTGCTGCATTTGAGATACAATGTAGTAGCAGTTGCAGGGACTCTGAGTTTTTATTTTTCTGTGTAATATTAATGCTACTTGTGAATCACCAGAAGACTCGCTATTACATTGAAGAGTGAAATAAACAACACAGGTTGTTTACACTTTAAAGGACAAATTAAAGAAAGGAAAACGTTCTGATCTTTCTGAGGGATTTAAACTCTTTTTTTCTTGGAACTAGGCATATCTGAGATCTTATAATCTAGAATCAAAGAATCAGATACAGATATTCATCTGATTCTAGTTTTTCAGAAGCTGCAAGAGAGAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTTACAGGAAATTTCTTTGTAGAAAGTTTACAGCTCAATCAGCATAATGCACCTTAGAGATATATTAAAGTACTAAATTCTGAAGCATGCTTTAGGTTCCTTGTAGTTTCCTACATTCAATATGCAATATAGTGGACAACTTCCAGGTGGACTATCTTGTGCTGCCTTTTTGTGTTTGGAGTTTCTCTATAAATGATAGGAACAGTCTATCTAAATGAACGATATCCTTTAACTTTTCATGGTGAGGGAAAAATAAACTTTTAGTTCTTCAAAAGTAACCTAAAAAATTATTATTTGTGAAAAGAAGGCTGTTTAAGTACTTATTACATTTTAATCTTTAAAATATTCTGTAGAAAATCTAACAGTGTCAAAGCGCTATCCTTTGAAGTTTCTATTTCCCCTAGCATACAAATAACCTCAAATCCCAAAAAGTGTAAGAATTTCATTTACATAGATCAAGCATATAAAATTGGAAAGTAAAGTTGCCATCTATTTCCATCAGGATTCAATTCTGAGTTCCTTATTTCAGCTTATTGCCTGATCTGCATATTAGTATCCTTGGTGGCATGTAAGTGTCTAGGATCTTGATCATCTAATTGTGCATCCAATATAAGACCTTAGGAAATTGATGAGATTAGGGCTAAAGGTAAGAAAGAACTCCCAGTGTTGTCCTAAATTAGGAGAAATCACCTTCCCTTCTTATGAATAGAGAACGAGAGAGAACCATTATTGTGGTGAAAATTTTCCTCTAAACTTACTGTTACCTAAGAATATAAGAAGCATTTAAGGACATATCAGATGTCTCTATTTTCTTCATTCAGAACTTCAATAAGGCATTTGAAGAACCAAGAAATGAAACATGGTATGTCCTTGGTTCAGTGTTAACCTCTCTTTTTATTTGATGTAGTTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTTGGTTGAAACAATACAAGGTTCAGGCTTCAAGTTGCAAACATTGAATCTGAG</genome_strand>
        <mrna_strand>TTCCTTCCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTTGGTTGAAACAATACAAGGTTCANGCTTCAAGTTGCAAACATTGAATCTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E312533" ref_strand="+" ref_description="SGN-E312533 [cLEZ-20-F14]">
      <seq>ttccttccatttgtaatctggcttctggataagagtgaaaaatcactctgaggaatttgcgtcggaaaaaaaaaatatggcgaccgtctcagcattttccgtttgtagagccaaatctcattctcgaattccccattcttcatctaatgcaattccccagcttttcccaatgcaatttcttcggtgtcaaagcaacaggagcattggcggtggttattcttgctcttcaagttcggtgaaagcgaaggtacctttgagaactaccaggatatgttctgcaactgaggaagatggtgctactgctgttgccgaagaagaatctgctgctcccactacatctgatcaaactgtttctgtttccgtctccccttccgacgttctaactatgttctttcaggcagaaggaacaatgaatgaagctgctattccttccgtgactaactctttagaggatattgaaggcattacaggtctcaaaattcaagttgtcgagggcattgcaagtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="12052" stop="14412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12352" g_stop="12748" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12749" i_stop="13446" i_length="698">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13447" g_stop="13500" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="451" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13501" i_stop="14056" i_length="556">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14057" g_stop="14112" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="507" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E312533" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12352" e_stop="12748"/>
          <exon e_start="13447" e_stop="13500"/>
          <exon e_start="14057" e_stop="14112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTCCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAGGTTAACCCCTTCTTTTCTATTTTGGTAAAGTTTCTAGTTTTTTCATTAAAGAACTCAACCAATGTGAACCCGAAAGGGTTGCTGTAGGTTAATAACTAGTGTAGGAATAGTTAATTGTGGTTGTAATGAATTTCAGTGGTTTGAACTTGGTTCTTGTGAAGTTTCTAATATTGTCAAAAAAATCAACCAGTGTGAATTTCTGATTAAAGTGAAGAGGGTTGCAGTAGGTTAATGCCTAGTGTGTACGAATAGTTTATCTGGTAGTAATGAATTTCAGTCTGTGCTCATATTGGTATGAAATGGGTTCTTGTGAGGTGAATTTTATCCAAAAATTCTAAGTAAGTGAATTCGCTAAGTTAGGATAATGGAGGAGGAGGAGGTTAATTCTCAGTGTAAGGCTGTAAGCATAGTAAATTTATTAAGAATTCTGATAGTACTGGTATTTGATAGTGCTTGCTCATATTGGACTATTGGAGTGAAATGGGTCGGATAAGAACGCATATACAGGATTGGTATAGCCCAACTCCAACTAGTTTGGCAGTGAGGTTTAGTTAATTTATTGATTGATTGTCTGATTAGTGCTCAATGTGCTAGTTTTGCTTTATTTTTCTTTCAAATTGTTAGTTGTCTGTAACCCTTAAACTTCTTGTGGATTCTTCTGTGAATGGTAAACTGAACTTATACCTTTCTTATCACAGGCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAGGTAAATTGAGTGTGTAAAATTCAAAGCTTCTTCTGGTACATGCTAATTTGTTGACACTTCACAAAACACATTACTTGTCTGCTGCATTTGAGATACAATGTAGTAGCAGTTGCAGGGACTCTGAGTTTTTATTTTTCTGTGTAATATTAATGCTACTTGTGAATCACCAGAAGACTCGCTATTACATTGAAGAGTGAAATAAACAACACAGGTTGTTTACACTTTAAAGGACAAATTAAAGAAAGGAAAACGTTCTGATCTTTCTGAGGGATTTAAACTCTTTTTTTCTTGGAACTAGGCATATCTGAGATCTTATAATCTAGAATCAAAGAATCAGATACAGATATTCATCTGATTCTAGTTTTTCAGAAGCTGCAAGAGAGAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGT</genome_strand>
        <mrna_strand>TTCCTTCCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E283660" ref_strand="+" ref_description="SGN-E283660 [cLES-1-J5]">
      <seq>tccttccatttgtaatctggcttctggataagagtgaaaaatcactctgaggaatttgcgtcggaaaaaaaaaatatggcgaccgtctcagcattttccgtttgtagagccaaatctcattctcgaattccccattcttcatctaatgcaattccccagcttttcccaatgcaatttcttcggtgtcaaagcaacaggagcattggcggtggttattcttgctcttcaagttcggtgaaagcgaaggtacctttgagaactaccaggatatgttctgcaactgaggaagatggtgctactgctgttgccgaagaagaatctgctgctcccactacatctgatcaaactgtttctgtttccgtctccccttccgacgttctaactatgttctttcaggcagaaggaacaatgaatgaagctgctattccttccgtgactaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="12053" stop="13791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12353" g_stop="12748" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="396" r_length="396" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12749" i_stop="13446" i_length="698">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13447" g_stop="13491" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="441" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E283660" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12353" e_stop="12748"/>
          <exon e_start="13447" e_stop="13491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTCCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAGGTTAACCCCTTCTTTTCTATTTTGGTAAAGTTTCTAGTTTTTTCATTAAAGAACTCAACCAATGTGAACCCGAAAGGGTTGCTGTAGGTTAATAACTAGTGTAGGAATAGTTAATTGTGGTTGTAATGAATTTCAGTGGTTTGAACTTGGTTCTTGTGAAGTTTCTAATATTGTCAAAAAAATCAACCAGTGTGAATTTCTGATTAAAGTGAAGAGGGTTGCAGTAGGTTAATGCCTAGTGTGTACGAATAGTTTATCTGGTAGTAATGAATTTCAGTCTGTGCTCATATTGGTATGAAATGGGTTCTTGTGAGGTGAATTTTATCCAAAAATTCTAAGTAAGTGAATTCGCTAAGTTAGGATAATGGAGGAGGAGGAGGTTAATTCTCAGTGTAAGGCTGTAAGCATAGTAAATTTATTAAGAATTCTGATAGTACTGGTATTTGATAGTGCTTGCTCATATTGGACTATTGGAGTGAAATGGGTCGGATAAGAACGCATATACAGGATTGGTATAGCCCAACTCCAACTAGTTTGGCAGTGAGGTTTAGTTAATTTATTGATTGATTGTCTGATTAGTGCTCAATGTGCTAGTTTTGCTTTATTTTTCTTTCAAATTGTTAGTTGTCTGTAACCCTTAAACTTCTTGTGGATTCTTCTGTGAATGGTAAACTGAACTTATACCTTTCTTATCACAGGCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAAC</genome_strand>
        <mrna_strand>TCCTTCCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E317367" ref_strand="+" ref_description="SGN-E317367 [cTOA-28-C22]">
      <seq>ccatttgtaatctggcttctggataagagtgaaaaatcactctgaggaatttgcgtcggaaaaaaaaaaatatggcgaccgtctcagcattttccgtttgtagagccaaatctcattctcgaattccccattcttcatctaatgcaattccccagcttttcccaatgcaatttcttcggtgtcaaagcaacaggagcattggcggtggttattcttgctcttcaagttcggtgaaagcgaaggtacctttgagaactaccaggatatgttctgcaactgaggaagatggtgctactgctgttgccgaagaagaatctgctgctcccactacatctgatcaaactgtttctgtttccgtctccccttccgacgttctaactatgttctttcaggcagaaggaacaatgaatgaagctgctattccttccgtgactaactctttagaggatattgaaggcattacaggtctcaaaattcaagttgtcgagggcattgcaagtgtcgagttaacaaagcaaacgacaatacaagctacaggggtggcttcaagtttggttgaaacaatacaaggttcaggcttcaagttgcaaacattgaatctgagctttcaggatgaagaaatattagctaagtggtggcttgtagaattcagagacatgataggctgatatctttcacgggcatcctgagagatctctgtttatttgtatgccagtagtttcagtaagcctatatctgtaacatttttgtggtatgcagttctttgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="12058" stop="15638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12358" g_stop="12748" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12749" i_stop="13446" i_length="698">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13447" g_stop="13500" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="446" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13501" i_stop="14056" i_length="556">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14057" g_stop="14116" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="506" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14117" i_stop="15073" i_length="957">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15074" g_stop="15338" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="770" r_length="264" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E317367" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317367" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12358" e_stop="12748"/>
          <exon e_start="13447" e_stop="13500"/>
          <exon e_start="14057" e_stop="14116"/>
          <exon e_start="15074" e_stop="15338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAA-ATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAGGTTAACCCCTTCTTTTCTATTTTGGTAAAGTTTCTAGTTTTTTCATTAAAGAACTCAACCAATGTGAACCCGAAAGGGTTGCTGTAGGTTAATAACTAGTGTAGGAATAGTTAATTGTGGTTGTAATGAATTTCAGTGGTTTGAACTTGGTTCTTGTGAAGTTTCTAATATTGTCAAAAAAATCAACCAGTGTGAATTTCTGATTAAAGTGAAGAGGGTTGCAGTAGGTTAATGCCTAGTGTGTACGAATAGTTTATCTGGTAGTAATGAATTTCAGTCTGTGCTCATATTGGTATGAAATGGGTTCTTGTGAGGTGAATTTTATCCAAAAATTCTAAGTAAGTGAATTCGCTAAGTTAGGATAATGGAGGAGGAGGAGGTTAATTCTCAGTGTAAGGCTGTAAGCATAGTAAATTTATTAAGAATTCTGATAGTACTGGTATTTGATAGTGCTTGCTCATATTGGACTATTGGAGTGAAATGGGTCGGATAAGAACGCATATACAGGATTGGTATAGCCCAACTCCAACTAGTTTGGCAGTGAGGTTTAGTTAATTTATTGATTGATTGTCTGATTAGTGCTCAATGTGCTAGTTTTGCTTTATTTTTCTTTCAAATTGTTAGTTGTCTGTAACCCTTAAACTTCTTGTGGATTCTTCTGTGAATGGTAAACTGAACTTATACCTTTCTTATCACAGGCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAGGTAAATTGAGTGTGTAAAATTCAAAGCTTCTTCTGGTACATGCTAATTTGTTGACACTTCACAAAACACATTACTTGTCTGCTGCATTTGAGATACAATGTAGTAGCAGTTGCAGGGACTCTGAGTTTTTATTTTTCTGTGTAATATTAATGCTACTTGTGAATCACCAGAAGACTCGCTATTACATTGAAGAGTGAAATAAACAACACAGGTTGTTTACACTTTAAAGGACAAATTAAAGAAAGGAAAACGTTCTGATCTTTCTGAGGGATTTAAACTCTTTTTTTCTTGGAACTAGGCATATCTGAGATCTTATAATCTAGAATCAAAGAATCAGATACAGATATTCATCTGATTCTAGTTTTTCAGAAGCTGCAAGAGAGAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTTACAGGAAATTTCTTTGTAGAAAGTTTACAGCTCAATCAGCATAATGCACCTTAGAGATATATTAAAGTACTAAATTCTGAAGCATGCTTTAGGTTCCTTGTAGTTTCCTACATTCAATATGCAATATAGTGGACAACTTCCAGGTGGACTATCTTGTGCTGCCTTTTTGTGTTTGGAGTTTCTCTATAAATGATAGGAACAGTCTATCTAAATGAACGATATCCTTTAACTTTTCATGGTGAGGGAAAAATAAACTTTTAGTTCTTCAAAAGTAACCTAAAAAATTATTATTTGTGAAAAGAAGGCTGTTTAAGTACTTATTACATTTTAATCTTTAAAATATTCTGTAGAAAATCTAACAGTGTCAAAGCGCTATCCTTTGAAGTTTCTATTTCCCCTAGCATACAAATAACCTCAAATCCCAAAAAGTGTAAGAATTTCATTTACATAGATCAAGCATATAAAATTGGAAAGTAAAGTTGCCATCTATTTCCATCAGGATTCAATTCTGAGTTCCTTATTTCAGCTTATTGCCTGATCTGCATATTAGTATCCTTGGTGGCATGTAAGTGTCTAGGATCTTGATCATCTAATTGTGCATCCAATATAAGACCTTAGGAAATTGATGAGATTAGGGCTAAAGGTAAGAAAGAACTCCCAGTGTTGTCCTAAATTAGGAGAAATCACCTTCCCTTCTTATGAATAGAGAACGAGAGAGAACCATTATTGTGGTGAAAATTTTCCTCTAAACTTACTGTTACCTAAGAATATAAGAAGCATTTAAGGACATATCAGATGTCTCTATTTTCTTCATTCAGAACTTCAATAAGGCATTTGAAGAACCAAGAAATGAAACATGGTATGTCCTTGGTTCAGTGTTAACCTCTCTTTTTATTTGATGTAGTTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTTGGTTGAAACAATACAAGGTTCAGGCTTCAAGTTGCAAACATTGAATCTGAGCTTTCAGGATGAAGAAGATATTAGCTAAGTGGTGGCTTGTAGAATTCAGAGACATGATAGGCTGATATCTTTCACGGGCATCCTGAGAGATCTCTGTTTATTTGTATGCCAGTAGTTTCAGTAAGCCTATATCTGTAACATTTTTGTGTTATGCAGTTCTTTGATCT</genome_strand>
        <mrna_strand>CCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTTGGTTGAAACAATACAAGGTTCAGGCTTCAAGTTGCAAACATTGAATCTGAGCTTTCAGGATGAAGAA-ATATTAGCTAAGTGGTGGCTTGTAGAATTCAGAGACATGATAGGCTGATATCTTTCACGGGCATCCTGAGAGATCTCTGTTTATTTGTATGCCAGTAGTTTCAGTAAGCCTATATCTGTAACATTTTTGTGGTATGCAGTTCTTTGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E294558" ref_strand="+" ref_description="SGN-E294558 [cLET-22-M24]">
      <seq>ccatttgtaatctggcttctggataagagtgaaaaatcactctgaggaatttgcgtcggaaaaaaaaaatatggcgaccgtctcagcattttccgtttgtagagccaaatctcattctcgaattccccattcttcatctaatgcaattccccagcttttcccaatgcaatttcttcggtgtcaaagcaacaggagcattggcggtggttattcttgctcttcaagttcggtgaaagcgaaagtacctttgagaactaccaggatatgttctgcaactgaggaagatggtgctactgctgttgccgaagaagaatctgctgctcccactacatctgatcaaactgtttctgtttccgtctccccttccgacgttctaactatgttctttcaggcagaaggaacaatgaatgaagctgctattccttccgtgactaactcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="12058" stop="13796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12358" g_stop="12748" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12749" i_stop="13446" i_length="698">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13447" g_stop="13496" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="441" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E294558" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12358" e_stop="12748"/>
          <exon e_start="13447" e_stop="13496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAGGTTAACCCCTTCTTTTCTATTTTGGTAAAGTTTCTAGTTTTTTCATTAAAGAACTCAACCAATGTGAACCCGAAAGGGTTGCTGTAGGTTAATAACTAGTGTAGGAATAGTTAATTGTGGTTGTAATGAATTTCAGTGGTTTGAACTTGGTTCTTGTGAAGTTTCTAATATTGTCAAAAAAATCAACCAGTGTGAATTTCTGATTAAAGTGAAGAGGGTTGCAGTAGGTTAATGCCTAGTGTGTACGAATAGTTTATCTGGTAGTAATGAATTTCAGTCTGTGCTCATATTGGTATGAAATGGGTTCTTGTGAGGTGAATTTTATCCAAAAATTCTAAGTAAGTGAATTCGCTAAGTTAGGATAATGGAGGAGGAGGAGGTTAATTCTCAGTGTAAGGCTGTAAGCATAGTAAATTTATTAAGAATTCTGATAGTACTGGTATTTGATAGTGCTTGCTCATATTGGACTATTGGAGTGAAATGGGTCGGATAAGAACGCATATACAGGATTGGTATAGCCCAACTCCAACTAGTTTGGCAGTGAGGTTTAGTTAATTTATTGATTGATTGTCTGATTAGTGCTCAATGTGCTAGTTTTGCTTTATTTTTCTTTCAAATTGTTAGTTGTCTGTAACCCTTAAACTTCTTGTGGATTCTTCTGTGAATGGTAAACTGAACTTATACCTTTCTTATCACAGGCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTT</genome_strand>
        <mrna_strand>CCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAAGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E294767" ref_strand="+" ref_description="SGN-E294767 [cLET-17-B21]">
      <seq>gttgtaatctgttttctggataagagggaaaaatcactctgaggaatttgcgtcggaaaaaaaaaatatggcgaccgtctcagcattttccgtttgtagagccaaatctcattctcgaattccccattcttcatctaatgcaattccccagcttttcccaatgcaatttcttcggtgtcaaagcaacaggagcattggcggcggttattcttgctcttcaacttcggtgaaagcgaaggtacctttgagaactaccaggatatgttctgcaactgaggaagatggtgctactgctgttgcctaagaagaatctgttgctcccactacatatgatcaaactgtttctgtttccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="12062" stop="13013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12361" g_stop="12713" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="353" r_length="353" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E294767" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>353</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12361" e_stop="12713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCG</genome_strand>
        <mrna_strand>GTTGTAATCTGTTTTCTGGATAAGAGGGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGCGGTTATTCTTGCTCTTCAACTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCTAAGAAGAATCTGTTGCTCCCACTACATATGATCAAACTGTTTCTGTTTCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284924" ref_strand="+" ref_description="SGN-E284924 [cLER-19-F14]">
      <seq>tgtaatctggcttctggataagagtgaaaaatcactctgaggaatttgcgtcggaaaaaaaaaatatggcgaccgtctcagcattttccgtttgtagagccaaatctcattctcgaattccccattcttcatctaatgcaattccccagcttttcccaatgcaatttcttcggtgtcaaagcaacaggagcattggcggtggttattcttgctcttcaagttcggtgaaagcgaaggtacctttgagaactaccaggatatgttctgcaactgaggaagatggtgctactgctgttgccgaagaagaatctgctgctcccactacatctgatcaaactgtttctgtttccgtctccccttccgacgttctaactatgttctttcaggcagaaggaacaatgaatgaagctgctattccttccgtgactaactctttagaggatattgaaggcattacaggtctcaaaattcaagttgtcgagggcattgcaagtgtcgagttaacaaagcaaacgacaatacaagctacaggggtggcttcaagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="12063" stop="15420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12363" g_stop="12748" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12749" i_stop="13446" i_length="698">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13447" g_stop="13500" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="440" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13501" i_stop="14056" i_length="556">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14057" g_stop="14116" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="500" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14117" i_stop="15073" i_length="957">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15074" g_stop="15120" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="547" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E284924" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12363" e_stop="12748"/>
          <exon e_start="13447" e_stop="13500"/>
          <exon e_start="14057" e_stop="14116"/>
          <exon e_start="15074" e_stop="15120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAGGTTAACCCCTTCTTTTCTATTTTGGTAAAGTTTCTAGTTTTTTCATTAAAGAACTCAACCAATGTGAACCCGAAAGGGTTGCTGTAGGTTAATAACTAGTGTAGGAATAGTTAATTGTGGTTGTAATGAATTTCAGTGGTTTGAACTTGGTTCTTGTGAAGTTTCTAATATTGTCAAAAAAATCAACCAGTGTGAATTTCTGATTAAAGTGAAGAGGGTTGCAGTAGGTTAATGCCTAGTGTGTACGAATAGTTTATCTGGTAGTAATGAATTTCAGTCTGTGCTCATATTGGTATGAAATGGGTTCTTGTGAGGTGAATTTTATCCAAAAATTCTAAGTAAGTGAATTCGCTAAGTTAGGATAATGGAGGAGGAGGAGGTTAATTCTCAGTGTAAGGCTGTAAGCATAGTAAATTTATTAAGAATTCTGATAGTACTGGTATTTGATAGTGCTTGCTCATATTGGACTATTGGAGTGAAATGGGTCGGATAAGAACGCATATACAGGATTGGTATAGCCCAACTCCAACTAGTTTGGCAGTGAGGTTTAGTTAATTTATTGATTGATTGTCTGATTAGTGCTCAATGTGCTAGTTTTGCTTTATTTTTCTTTCAAATTGTTAGTTGTCTGTAACCCTTAAACTTCTTGTGGATTCTTCTGTGAATGGTAAACTGAACTTATACCTTTCTTATCACAGGCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAGGTAAATTGAGTGTGTAAAATTCAAAGCTTCTTCTGGTACATGCTAATTTGTTGACACTTCACAAAACACATTACTTGTCTGCTGCATTTGAGATACAATGTAGTAGCAGTTGCAGGGACTCTGAGTTTTTATTTTTCTGTGTAATATTAATGCTACTTGTGAATCACCAGAAGACTCGCTATTACATTGAAGAGTGAAATAAACAACACAGGTTGTTTACACTTTAAAGGACAAATTAAAGAAAGGAAAACGTTCTGATCTTTCTGAGGGATTTAAACTCTTTTTTTCTTGGAACTAGGCATATCTGAGATCTTATAATCTAGAATCAAAGAATCAGATACAGATATTCATCTGATTCTAGTTTTTCAGAAGCTGCAAGAGAGAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTTACAGGAAATTTCTTTGTAGAAAGTTTACAGCTCAATCAGCATAATGCACCTTAGAGATATATTAAAGTACTAAATTCTGAAGCATGCTTTAGGTTCCTTGTAGTTTCCTACATTCAATATGCAATATAGTGGACAACTTCCAGGTGGACTATCTTGTGCTGCCTTTTTGTGTTTGGAGTTTCTCTATAAATGATAGGAACAGTCTATCTAAATGAACGATATCCTTTAACTTTTCATGGTGAGGGAAAAATAAACTTTTAGTTCTTCAAAAGTAACCTAAAAAATTATTATTTGTGAAAAGAAGGCTGTTTAAGTACTTATTACATTTTAATCTTTAAAATATTCTGTAGAAAATCTAACAGTGTCAAAGCGCTATCCTTTGAAGTTTCTATTTCCCCTAGCATACAAATAACCTCAAATCCCAAAAAGTGTAAGAATTTCATTTACATAGATCAAGCATATAAAATTGGAAAGTAAAGTTGCCATCTATTTCCATCAGGATTCAATTCTGAGTTCCTTATTTCAGCTTATTGCCTGATCTGCATATTAGTATCCTTGGTGGCATGTAAGTGTCTAGGATCTTGATCATCTAATTGTGCATCCAATATAAGACCTTAGGAAATTGATGAGATTAGGGCTAAAGGTAAGAAAGAACTCCCAGTGTTGTCCTAAATTAGGAGAAATCACCTTCCCTTCTTATGAATAGAGAACGAGAGAGAACCATTATTGTGGTGAAAATTTTCCTCTAAACTTACTGTTACCTAAGAATATAAGAAGCATTTAAGGACATATCAGATGTCTCTATTTTCTTCATTCAGAACTTCAATAAGGCATTTGAAGAACCAAGAAATGAAACATGGTATGTCCTTGGTTCAGTGTTAACCTCTCTTTTTATTTGATGTAGTTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTT</genome_strand>
        <mrna_strand>TGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E317398" ref_strand="+" ref_description="SGN-E317398 [cTOA-28-O4]">
      <seq>tctggcttctggataagagtgaaaaatcactctgaggaatttgcgtcggaaaaaaaaaatatggcgaccgtctcagcattttccgtttgtagagccaaatctcattctcgaattccccattcttcatctaatgcaattccccagcttttcccaatgcaatttcttcggtgtcaaagcaacaggagcattggcggtggttattcttgctcttcaagttcggtgaaagcgaaggtacctttgagaactaccaggatatgttctgcaactgaggaagatggtgctactgctgttgccgaagaagaatctgctgctcccactacatctgatcaaactgtttctgtttccgtctccccttccgacgttctaactatgttctttcaggcagaaggaacaatgaatgaagctgctattccttccgtgactaactctttagaggatattgaaggcattacaggtctcaaaattcaagttgtcgagggcattgcaagtgtcgagttaacaaagcaaacgacaatacaagctacaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="12068" stop="15406"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12368" g_stop="12748" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12749" i_stop="13446" i_length="698">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13447" g_stop="13500" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="435" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13501" i_stop="14056" i_length="556">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14057" g_stop="14116" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="495" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14117" i_stop="15073" i_length="957">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15074" g_stop="15106" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="528" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E317398" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317398" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12368" e_stop="12748"/>
          <exon e_start="13447" e_stop="13500"/>
          <exon e_start="14057" e_stop="14116"/>
          <exon e_start="15074" e_stop="15106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAGGTTAACCCCTTCTTTTCTATTTTGGTAAAGTTTCTAGTTTTTTCATTAAAGAACTCAACCAATGTGAACCCGAAAGGGTTGCTGTAGGTTAATAACTAGTGTAGGAATAGTTAATTGTGGTTGTAATGAATTTCAGTGGTTTGAACTTGGTTCTTGTGAAGTTTCTAATATTGTCAAAAAAATCAACCAGTGTGAATTTCTGATTAAAGTGAAGAGGGTTGCAGTAGGTTAATGCCTAGTGTGTACGAATAGTTTATCTGGTAGTAATGAATTTCAGTCTGTGCTCATATTGGTATGAAATGGGTTCTTGTGAGGTGAATTTTATCCAAAAATTCTAAGTAAGTGAATTCGCTAAGTTAGGATAATGGAGGAGGAGGAGGTTAATTCTCAGTGTAAGGCTGTAAGCATAGTAAATTTATTAAGAATTCTGATAGTACTGGTATTTGATAGTGCTTGCTCATATTGGACTATTGGAGTGAAATGGGTCGGATAAGAACGCATATACAGGATTGGTATAGCCCAACTCCAACTAGTTTGGCAGTGAGGTTTAGTTAATTTATTGATTGATTGTCTGATTAGTGCTCAATGTGCTAGTTTTGCTTTATTTTTCTTTCAAATTGTTAGTTGTCTGTAACCCTTAAACTTCTTGTGGATTCTTCTGTGAATGGTAAACTGAACTTATACCTTTCTTATCACAGGCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAGGTAAATTGAGTGTGTAAAATTCAAAGCTTCTTCTGGTACATGCTAATTTGTTGACACTTCACAAAACACATTACTTGTCTGCTGCATTTGAGATACAATGTAGTAGCAGTTGCAGGGACTCTGAGTTTTTATTTTTCTGTGTAATATTAATGCTACTTGTGAATCACCAGAAGACTCGCTATTACATTGAAGAGTGAAATAAACAACACAGGTTGTTTACACTTTAAAGGACAAATTAAAGAAAGGAAAACGTTCTGATCTTTCTGAGGGATTTAAACTCTTTTTTTCTTGGAACTAGGCATATCTGAGATCTTATAATCTAGAATCAAAGAATCAGATACAGATATTCATCTGATTCTAGTTTTTCAGAAGCTGCAAGAGAGAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTTACAGGAAATTTCTTTGTAGAAAGTTTACAGCTCAATCAGCATAATGCACCTTAGAGATATATTAAAGTACTAAATTCTGAAGCATGCTTTAGGTTCCTTGTAGTTTCCTACATTCAATATGCAATATAGTGGACAACTTCCAGGTGGACTATCTTGTGCTGCCTTTTTGTGTTTGGAGTTTCTCTATAAATGATAGGAACAGTCTATCTAAATGAACGATATCCTTTAACTTTTCATGGTGAGGGAAAAATAAACTTTTAGTTCTTCAAAAGTAACCTAAAAAATTATTATTTGTGAAAAGAAGGCTGTTTAAGTACTTATTACATTTTAATCTTTAAAATATTCTGTAGAAAATCTAACAGTGTCAAAGCGCTATCCTTTGAAGTTTCTATTTCCCCTAGCATACAAATAACCTCAAATCCCAAAAAGTGTAAGAATTTCATTTACATAGATCAAGCATATAAAATTGGAAAGTAAAGTTGCCATCTATTTCCATCAGGATTCAATTCTGAGTTCCTTATTTCAGCTTATTGCCTGATCTGCATATTAGTATCCTTGGTGGCATGTAAGTGTCTAGGATCTTGATCATCTAATTGTGCATCCAATATAAGACCTTAGGAAATTGATGAGATTAGGGCTAAAGGTAAGAAAGAACTCCCAGTGTTGTCCTAAATTAGGAGAAATCACCTTCCCTTCTTATGAATAGAGAACGAGAGAGAACCATTATTGTGGTGAAAATTTTCCTCTAAACTTACTGTTACCTAAGAATATAAGAAGCATTTAAGGACATATCAGATGTCTCTATTTTCTTCATTCAGAACTTCAATAAGGCATTTGAAGAACCAAGAAATGAAACATGGTATGTCCTTGGTTCAGTGTTAACCTCTCTTTTTATTTGATGTAGTTAACAAAGCAAACGACAATACAAGCTACAGGG</genome_strand>
        <mrna_strand>TCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACAAAGCAAACGACAATACAAGCTACAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E470079" ref_strand="+" ref_description="SGN-E470079 [cSTB-16-L20]">
      <seq>cttctggataagagtgaaaaaatcactctgaggaattagcgtcggaaaaaaaatatggcgaccgtctcagcattttccgtttgcagagctaaatctcattctcaaattccccattcttcatctaatgcagttccccagcttttcccaattcaattccttcggtttcaaagtaacagtggcatttgcggtggttattcttgctctccaagttcggtgaaagcgaaggtaccattgagaactactaggatatgttctgcaaatgaggaagatggtgctactgctgttgccgaagaagaatctgctgctcccactacatctgatcagactgtttctgtttccgtctccccttccgacgtcctcactatgttctttcaggcagaaggaacaatgaatgaagctgctattccttctgtgactaatgctttagaggatattgaaggcattacaggtctcaaaattcaagttgtcgagggcattgcaagtgtcgagttaacaaagcaaacgacaatacaagctaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="12073" stop="15403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12373" g_stop="12748" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12749" i_stop="13446" i_length="698">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13447" g_stop="13500" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="429" r_length="54" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13501" i_stop="14056" i_length="556">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14057" g_stop="14116" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="489" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14117" i_stop="15073" i_length="957">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15074" g_stop="15103" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="519" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E470079" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E470079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12373" e_stop="12748"/>
          <exon e_start="13447" e_stop="13500"/>
          <exon e_start="14057" e_stop="14116"/>
          <exon e_start="15074" e_stop="15103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTGGATAAGAGTG-AAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAGGTTAACCCCTTCTTTTCTATTTTGGTAAAGTTTCTAGTTTTTTCATTAAAGAACTCAACCAATGTGAACCCGAAAGGGTTGCTGTAGGTTAATAACTAGTGTAGGAATAGTTAATTGTGGTTGTAATGAATTTCAGTGGTTTGAACTTGGTTCTTGTGAAGTTTCTAATATTGTCAAAAAAATCAACCAGTGTGAATTTCTGATTAAAGTGAAGAGGGTTGCAGTAGGTTAATGCCTAGTGTGTACGAATAGTTTATCTGGTAGTAATGAATTTCAGTCTGTGCTCATATTGGTATGAAATGGGTTCTTGTGAGGTGAATTTTATCCAAAAATTCTAAGTAAGTGAATTCGCTAAGTTAGGATAATGGAGGAGGAGGAGGTTAATTCTCAGTGTAAGGCTGTAAGCATAGTAAATTTATTAAGAATTCTGATAGTACTGGTATTTGATAGTGCTTGCTCATATTGGACTATTGGAGTGAAATGGGTCGGATAAGAACGCATATACAGGATTGGTATAGCCCAACTCCAACTAGTTTGGCAGTGAGGTTTAGTTAATTTATTGATTGATTGTCTGATTAGTGCTCAATGTGCTAGTTTTGCTTTATTTTTCTTTCAAATTGTTAGTTGTCTGTAACCCTTAAACTTCTTGTGGATTCTTCTGTGAATGGTAAACTGAACTTATACCTTTCTTATCACAGGCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAGGTAAATTGAGTGTGTAAAATTCAAAGCTTCTTCTGGTACATGCTAATTTGTTGACACTTCACAAAACACATTACTTGTCTGCTGCATTTGAGATACAATGTAGTAGCAGTTGCAGGGACTCTGAGTTTTTATTTTTCTGTGTAATATTAATGCTACTTGTGAATCACCAGAAGACTCGCTATTACATTGAAGAGTGAAATAAACAACACAGGTTGTTTACACTTTAAAGGACAAATTAAAGAAAGGAAAACGTTCTGATCTTTCTGAGGGATTTAAACTCTTTTTTTCTTGGAACTAGGCATATCTGAGATCTTATAATCTAGAATCAAAGAATCAGATACAGATATTCATCTGATTCTAGTTTTTCAGAAGCTGCAAGAGAGAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTTACAGGAAATTTCTTTGTAGAAAGTTTACAGCTCAATCAGCATAATGCACCTTAGAGATATATTAAAGTACTAAATTCTGAAGCATGCTTTAGGTTCCTTGTAGTTTCCTACATTCAATATGCAATATAGTGGACAACTTCCAGGTGGACTATCTTGTGCTGCCTTTTTGTGTTTGGAGTTTCTCTATAAATGATAGGAACAGTCTATCTAAATGAACGATATCCTTTAACTTTTCATGGTGAGGGAAAAATAAACTTTTAGTTCTTCAAAAGTAACCTAAAAAATTATTATTTGTGAAAAGAAGGCTGTTTAAGTACTTATTACATTTTAATCTTTAAAATATTCTGTAGAAAATCTAACAGTGTCAAAGCGCTATCCTTTGAAGTTTCTATTTCCCCTAGCATACAAATAACCTCAAATCCCAAAAAGTGTAAGAATTTCATTTACATAGATCAAGCATATAAAATTGGAAAGTAAAGTTGCCATCTATTTCCATCAGGATTCAATTCTGAGTTCCTTATTTCAGCTTATTGCCTGATCTGCATATTAGTATCCTTGGTGGCATGTAAGTGTCTAGGATCTTGATCATCTAATTGTGCATCCAATATAAGACCTTAGGAAATTGATGAGATTAGGGCTAAAGGTAAGAAAGAACTCCCAGTGTTGTCCTAAATTAGGAGAAATCACCTTCCCTTCTTATGAATAGAGAACGAGAGAGAACCATTATTGTGGTGAAAATTTTCCTCTAAACTTACTGTTACCTAAGAATATAAGAAGCATTTAAGGACATATCAGATGTCTCTATTTTCTTCATTCAGAACTTCAATAAGGCATTTGAAGAACCAAGAAATGAAACATGGTATGTCCTTGGTTCAGTGTTAACCTCTCTTTTTATTTGATGTAGTTAACAAAGCAAACGACAATACAAGCTACA</genome_strand>
        <mrna_strand>CTTCTGGATAAGAGTGAAAAAATCACTCTGAGGAATTAGCGTCGG--AAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGCAGAGCTAAATCTCATTCTCAAATTCCCCATTCTTCATCTAATGCAGTTCCCCAGCTTTTCCCAATTCAATTCCTTCGGTTTCAAAGTAACAGTGGCATTTGCGGTGGTTATTCTTGCTCTCCAAGTTCGGTGAAAGCGAAGGTACCATTGAGAACTACTAGGATATGTTCTGCAAATGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAGACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTCCTCACTATGTTCTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCTGTGACTAATGCTTTAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACAAAGCAAACGACAATACAAGCTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E412116" ref_strand="+" ref_description="SGN-E412116 [STM-15-D10]">
      <seq>cttctggataagagtgaaaaaatcactctgaggaattagcgtcggaaaaaaaatatggcgaccgtctcagcattttccgtttgcagagctaaatctcattctcaaattccccattcttcatctaatgcagttccccagcttttcccaattcaattccttcggtttcaaagtaacagtggcatttgcggtggttattcttgctctccaagttcggtgaaagcgaaggtaccattgagaactactaggatatgttctgcaaatgaggaagatggtgctactgctgttgccgaagaagaatctgctgctcccactacatctgatcagactgtttctgtttccgtctccccttccgacgtcctcactatgttctttcaggcagaaggaacaatgaatgaagctgctattccttctgtgactaatgctttagaggatattgaaggcattacaggtctcaaaattcaagttgtcgagggcattgcaagtgtcgagttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="12073" stop="14420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12373" g_stop="12748" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12749" i_stop="13446" i_length="698">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13447" g_stop="13500" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="429" r_length="54" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13501" i_stop="14056" i_length="556">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14057" g_stop="14116" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="489" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E412116" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E412116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12373" e_stop="12748"/>
          <exon e_start="13447" e_stop="13500"/>
          <exon e_start="14057" e_stop="14116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTGGATAAGAGTG-AAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAGGTTAACCCCTTCTTTTCTATTTTGGTAAAGTTTCTAGTTTTTTCATTAAAGAACTCAACCAATGTGAACCCGAAAGGGTTGCTGTAGGTTAATAACTAGTGTAGGAATAGTTAATTGTGGTTGTAATGAATTTCAGTGGTTTGAACTTGGTTCTTGTGAAGTTTCTAATATTGTCAAAAAAATCAACCAGTGTGAATTTCTGATTAAAGTGAAGAGGGTTGCAGTAGGTTAATGCCTAGTGTGTACGAATAGTTTATCTGGTAGTAATGAATTTCAGTCTGTGCTCATATTGGTATGAAATGGGTTCTTGTGAGGTGAATTTTATCCAAAAATTCTAAGTAAGTGAATTCGCTAAGTTAGGATAATGGAGGAGGAGGAGGTTAATTCTCAGTGTAAGGCTGTAAGCATAGTAAATTTATTAAGAATTCTGATAGTACTGGTATTTGATAGTGCTTGCTCATATTGGACTATTGGAGTGAAATGGGTCGGATAAGAACGCATATACAGGATTGGTATAGCCCAACTCCAACTAGTTTGGCAGTGAGGTTTAGTTAATTTATTGATTGATTGTCTGATTAGTGCTCAATGTGCTAGTTTTGCTTTATTTTTCTTTCAAATTGTTAGTTGTCTGTAACCCTTAAACTTCTTGTGGATTCTTCTGTGAATGGTAAACTGAACTTATACCTTTCTTATCACAGGCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAGGTAAATTGAGTGTGTAAAATTCAAAGCTTCTTCTGGTACATGCTAATTTGTTGACACTTCACAAAACACATTACTTGTCTGCTGCATTTGAGATACAATGTAGTAGCAGTTGCAGGGACTCTGAGTTTTTATTTTTCTGTGTAATATTAATGCTACTTGTGAATCACCAGAAGACTCGCTATTACATTGAAGAGTGAAATAAACAACACAGGTTGTTTACACTTTAAAGGACAAATTAAAGAAAGGAAAACGTTCTGATCTTTCTGAGGGATTTAAACTCTTTTTTTCTTGGAACTAGGCATATCTGAGATCTTATAATCTAGAATCAAAGAATCAGATACAGATATTCATCTGATTCTAGTTTTTCAGAAGCTGCAAGAGAGAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAG</genome_strand>
        <mrna_strand>CTTCTGGATAAGAGTGAAAAAATCACTCTGAGGAATTAGCGTCGG--AAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGCAGAGCTAAATCTCATTCTCAAATTCCCCATTCTTCATCTAATGCAGTTCCCCAGCTTTTCCCAATTCAATTCCTTCGGTTTCAAAGTAACAGTGGCATTTGCGGTGGTTATTCTTGCTCTCCAAGTTCGGTGAAAGCGAAGGTACCATTGAGAACTACTAGGATATGTTCTGCAAATGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAGACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTCCTCACTATGTTCTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCTGTGACTAATGCTTTAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E618697" ref_strand="+" ref_description="SGN-E618697 [69378]">
      <seq>taaaaaatcactctgaggaattagcgtcggaaaaaaaatatggcgaccgtctcagcattttccgtttgcagagctaaatctcattctcaaattccccattcttcatctaatgcagttccccagcttttcccaattcaattccttcggtttcaaagtaacagtggcatttgcggtggttattcttgctctccaagttcggtgaaagcgaaggtaccattgagaactactaggatatgttctgcannaatgaggaacgatgnngtgctaactgcttgttgccgaagaaagaatcntgctgctcccactacatctgatcagactgtttctgtttccgtctccccttccgacgtcctcactatgttctttcaggcagaaggaacaatgaatgaagctgctattccttctgtgactaatgctttagaggatattgaaggcattacaggtctcaaaattcaagttgtcgagggcattgcaagtgtcgagttaacaaagcaaacgacaatacaagctacaggggtggcttccagtttggttgaaacaatacaaggttcaggcttcaagttgcaaacattgaatctgagctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="12086" stop="15476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12387" g_stop="12748" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.890"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12749" i_stop="13446" i_length="698">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13447" g_stop="13500" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="423" r_length="54" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13501" i_stop="14056" i_length="556">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14057" g_stop="14116" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="483" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14117" i_stop="15073" i_length="957">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15074" g_stop="15176" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="586" r_length="103" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E618697" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E618697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12387" e_stop="12748"/>
          <exon e_start="13447" e_stop="13500"/>
          <exon e_start="14057" e_stop="14116"/>
          <exon e_start="15074" e_stop="15176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCA--ACTGAGGAA-GATG--GTGCT-ACTGC-TGTTGCCGAAG-AAGAATC-TGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAGGTTAACCCCTTCTTTTCTATTTTGGTAAAGTTTCTAGTTTTTTCATTAAAGAACTCAACCAATGTGAACCCGAAAGGGTTGCTGTAGGTTAATAACTAGTGTAGGAATAGTTAATTGTGGTTGTAATGAATTTCAGTGGTTTGAACTTGGTTCTTGTGAAGTTTCTAATATTGTCAAAAAAATCAACCAGTGTGAATTTCTGATTAAAGTGAAGAGGGTTGCAGTAGGTTAATGCCTAGTGTGTACGAATAGTTTATCTGGTAGTAATGAATTTCAGTCTGTGCTCATATTGGTATGAAATGGGTTCTTGTGAGGTGAATTTTATCCAAAAATTCTAAGTAAGTGAATTCGCTAAGTTAGGATAATGGAGGAGGAGGAGGTTAATTCTCAGTGTAAGGCTGTAAGCATAGTAAATTTATTAAGAATTCTGATAGTACTGGTATTTGATAGTGCTTGCTCATATTGGACTATTGGAGTGAAATGGGTCGGATAAGAACGCATATACAGGATTGGTATAGCCCAACTCCAACTAGTTTGGCAGTGAGGTTTAGTTAATTTATTGATTGATTGTCTGATTAGTGCTCAATGTGCTAGTTTTGCTTTATTTTTCTTTCAAATTGTTAGTTGTCTGTAACCCTTAAACTTCTTGTGGATTCTTCTGTGAATGGTAAACTGAACTTATACCTTTCTTATCACAGGCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAGGTAAATTGAGTGTGTAAAATTCAAAGCTTCTTCTGGTACATGCTAATTTGTTGACACTTCACAAAACACATTACTTGTCTGCTGCATTTGAGATACAATGTAGTAGCAGTTGCAGGGACTCTGAGTTTTTATTTTTCTGTGTAATATTAATGCTACTTGTGAATCACCAGAAGACTCGCTATTACATTGAAGAGTGAAATAAACAACACAGGTTGTTTACACTTTAAAGGACAAATTAAAGAAAGGAAAACGTTCTGATCTTTCTGAGGGATTTAAACTCTTTTTTTCTTGGAACTAGGCATATCTGAGATCTTATAATCTAGAATCAAAGAATCAGATACAGATATTCATCTGATTCTAGTTTTTCAGAAGCTGCAAGAGAGAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTTACAGGAAATTTCTTTGTAGAAAGTTTACAGCTCAATCAGCATAATGCACCTTAGAGATATATTAAAGTACTAAATTCTGAAGCATGCTTTAGGTTCCTTGTAGTTTCCTACATTCAATATGCAATATAGTGGACAACTTCCAGGTGGACTATCTTGTGCTGCCTTTTTGTGTTTGGAGTTTCTCTATAAATGATAGGAACAGTCTATCTAAATGAACGATATCCTTTAACTTTTCATGGTGAGGGAAAAATAAACTTTTAGTTCTTCAAAAGTAACCTAAAAAATTATTATTTGTGAAAAGAAGGCTGTTTAAGTACTTATTACATTTTAATCTTTAAAATATTCTGTAGAAAATCTAACAGTGTCAAAGCGCTATCCTTTGAAGTTTCTATTTCCCCTAGCATACAAATAACCTCAAATCCCAAAAAGTGTAAGAATTTCATTTACATAGATCAAGCATATAAAATTGGAAAGTAAAGTTGCCATCTATTTCCATCAGGATTCAATTCTGAGTTCCTTATTTCAGCTTATTGCCTGATCTGCATATTAGTATCCTTGGTGGCATGTAAGTGTCTAGGATCTTGATCATCTAATTGTGCATCCAATATAAGACCTTAGGAAATTGATGAGATTAGGGCTAAAGGTAAGAAAGAACTCCCAGTGTTGTCCTAAATTAGGAGAAATCACCTTCCCTTCTTATGAATAGAGAACGAGAGAGAACCATTATTGTGGTGAAAATTTTCCTCTAAACTTACTGTTACCTAAGAATATAAGAAGCATTTAAGGACATATCAGATGTCTCTATTTTCTTCATTCAGAACTTCAATAAGGCATTTGAAGAACCAAGAAATGAAACATGGTATGTCCTTGGTTCAGTGTTAACCTCTCTTTTTATTTGATGTAGTTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTTGGTTGAAACAATACAAGGTTCAGGCTTCAAGTTGCAAACATTGAATCTGAGCTTTC</genome_strand>
        <mrna_strand>TAAAAAATCACTCTGAGGAATTAGCGTCGG--AAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGCAGAGCTAAATCTCATTCTCAAATTCCCCATTCTTCATCTAATGCAGTTCCCCAGCTTTTCCCAATTCAATTCCTTCGGTTTCAAAGTAACAGTGGCATTTGCGGTGGTTATTCTTGCTCTCCAAGTTCGGTGAAAGCGAAGGTACCATTGAGAACTACTAGGATATGTTCTGCANNAATGAGGAACGATGNNGTGCTAACTGCTTGTTGCCGAAGAAAGAATCNTGCTGCTCCCACTACATCTGATCAGACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTCCTCACTATGTTCTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCTGTGACTAATGCTTTAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCCAGTTTGGTTGAAACAATACAAGGTTCAGGCTTCAAGTTGCAAACATTGAATCTGAGCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E596861" ref_strand="+" ref_description="SGN-E596861 [40352]">
      <seq>aaaaaatcactctgaggaattagcgtcggaaaaaaaatatggcgaccgtctcagcattttccgtttgcagagctaaatctcattctcaaattccccattcttcatctaatgcagttccccatcttttcccaattcaattccttcggtttcaaagtaacagtggcatttgcggtggttattcttgctctccaagttcggtgaaagcgaaggtaccattgagaactactaggatatgttctgcaaatgaggaagatggtgctactgctgttgccgaagaagaatctgctggtcccactacatctgatcagactgtttctgtttccgtctccccttccgacgtcctcactatgttcttgtcaggcagaaggaaccaatgacatgaagctgctattccttctgtgactaacgctttagagttaacaaagcaaacgacaatacaagctacaggggtggcttccagtttggttgaaacaatacaaggttcaggcttcaagttgcaaacattgaatctgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="12089" stop="15471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12388" g_stop="12748" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12749" i_stop="13446" i_length="698">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13447" g_stop="13500" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="416" r_length="56" r_score="0.889"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13501" i_stop="15073" i_length="1573">
            <donor d_prob="0.998" d_score="0.88"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15074" g_stop="15171" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="514" r_length="98" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E596861" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E596861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12388" e_stop="12748"/>
          <exon e_start="13447" e_stop="13500"/>
          <exon e_start="15074" e_stop="15171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTT-TCAGGTTAACCCCTTCTTTTCTATTTTGGTAAAGTTTCTAGTTTTTTCATTAAAGAACTCAACCAATGTGAACCCGAAAGGGTTGCTGTAGGTTAATAACTAGTGTAGGAATAGTTAATTGTGGTTGTAATGAATTTCAGTGGTTTGAACTTGGTTCTTGTGAAGTTTCTAATATTGTCAAAAAAATCAACCAGTGTGAATTTCTGATTAAAGTGAAGAGGGTTGCAGTAGGTTAATGCCTAGTGTGTACGAATAGTTTATCTGGTAGTAATGAATTTCAGTCTGTGCTCATATTGGTATGAAATGGGTTCTTGTGAGGTGAATTTTATCCAAAAATTCTAAGTAAGTGAATTCGCTAAGTTAGGATAATGGAGGAGGAGGAGGTTAATTCTCAGTGTAAGGCTGTAAGCATAGTAAATTTATTAAGAATTCTGATAGTACTGGTATTTGATAGTGCTTGCTCATATTGGACTATTGGAGTGAAATGGGTCGGATAAGAACGCATATACAGGATTGGTATAGCCCAACTCCAACTAGTTTGGCAGTGAGGTTTAGTTAATTTATTGATTGATTGTCTGATTAGTGCTCAATGTGCTAGTTTTGCTTTATTTTTCTTTCAAATTGTTAGTTGTCTGTAACCCTTAAACTTCTTGTGGATTCTTCTGTGAATGGTAAACTGAACTTATACCTTTCTTATCACAGGCAGAAGGAA-CAATGA-ATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAGGTAAATTGAGTGTGTAAAATTCAAAGCTTCTTCTGGTACATGCTAATTTGTTGACACTTCACAAAACACATTACTTGTCTGCTGCATTTGAGATACAATGTAGTAGCAGTTGCAGGGACTCTGAGTTTTTATTTTTCTGTGTAATATTAATGCTACTTGTGAATCACCAGAAGACTCGCTATTACATTGAAGAGTGAAATAAACAACACAGGTTGTTTACACTTTAAAGGACAAATTAAAGAAAGGAAAACGTTCTGATCTTTCTGAGGGATTTAAACTCTTTTTTTCTTGGAACTAGGCATATCTGAGATCTTATAATCTAGAATCAAAGAATCAGATACAGATATTCATCTGATTCTAGTTTTTCAGAAGCTGCAAGAGAGAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTTACAGGAAATTTCTTTGTAGAAAGTTTACAGCTCAATCAGCATAATGCACCTTAGAGATATATTAAAGTACTAAATTCTGAAGCATGCTTTAGGTTCCTTGTAGTTTCCTACATTCAATATGCAATATAGTGGACAACTTCCAGGTGGACTATCTTGTGCTGCCTTTTTGTGTTTGGAGTTTCTCTATAAATGATAGGAACAGTCTATCTAAATGAACGATATCCTTTAACTTTTCATGGTGAGGGAAAAATAAACTTTTAGTTCTTCAAAAGTAACCTAAAAAATTATTATTTGTGAAAAGAAGGCTGTTTAAGTACTTATTACATTTTAATCTTTAAAATATTCTGTAGAAAATCTAACAGTGTCAAAGCGCTATCCTTTGAAGTTTCTATTTCCCCTAGCATACAAATAACCTCAAATCCCAAAAAGTGTAAGAATTTCATTTACATAGATCAAGCATATAAAATTGGAAAGTAAAGTTGCCATCTATTTCCATCAGGATTCAATTCTGAGTTCCTTATTTCAGCTTATTGCCTGATCTGCATATTAGTATCCTTGGTGGCATGTAAGTGTCTAGGATCTTGATCATCTAATTGTGCATCCAATATAAGACCTTAGGAAATTGATGAGATTAGGGCTAAAGGTAAGAAAGAACTCCCAGTGTTGTCCTAAATTAGGAGAAATCACCTTCCCTTCTTATGAATAGAGAACGAGAGAGAACCATTATTGTGGTGAAAATTTTCCTCTAAACTTACTGTTACCTAAGAATATAAGAAGCATTTAAGGACATATCAGATGTCTCTATTTTCTTCATTCAGAACTTCAATAAGGCATTTGAAGAACCAAGAAATGAAACATGGTATGTCCTTGGTTCAGTGTTAACCTCTCTTTTTATTTGATGTAGTTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTTGGTTGAAACAATACAAGGTTCAGGCTTCAAGTTGCAAACATTGAATCTGAG</genome_strand>
        <mrna_strand>AAAAAATCACTCTGAGGAATTAGCGTCGG--AAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGCAGAGCTAAATCTCATTCTCAAATTCCCCATTCTTCATCTAATGCAGTTCCCCATCTTTTCCCAATTCAATTCCTTCGGTTTCAAAGTAACAGTGGCATTTGCGGTGGTTATTCTTGCTCTCCAAGTTCGGTGAAAGCGAAGGTACCATTGAGAACTACTAGGATATGTTCTGCAAATGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGGTCCCACTACATCTGATCAGACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTCCTCACTATGTTCTTGTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAACCAATGACATGAAGCTGCTATTCCTTCTGTGACTAACGCTTTAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCCAGTTTGGTTGAAACAATACAAGGTTCAGGCTTCAAGTTGCAAACATTGAATCTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E615517" ref_strand="+" ref_description="SGN-E615517 [65316]">
      <seq>aaaatcactctgaggaattagcgtcggaaaaaaaatatggcgaccgtctcagcattttccgtttgcagagctaaatctcattctcaaattccccattcttcatctaatgcagttccccagcttttcccaattcaattccttcggtttcaaagtaacagtggcatttgcggtggttattcttgctctccaagttcggtgaaagcgaaggtaccattgagaactactaggatatgttctgcaaatgaggaagatggtgctactgctgttgccgaagaagaatctgctgctcccactacatctgatcagactgtttctgtttccgtctccccttccgacgtcctcactatgttctttcaggcagaaggaacaatgaatgaagctgctattccttctgtgactaatgctttagaggatattgaaggcattacaggtctcaaaattcaagttgtcgagggcattgcaagtgtcgagttaacaaagcaaacgacaatacaagctacaggggtggcttccagtttggttgaaacaatacaaggttcaggcttcaagttgcaaacattgaatctgagctttcaggatgaagaagatattagctaaggggtggattatagagttcagagacatgatgatatctttcacgagcatcttaaagatgtctctatttccctagcttggatgccattagttcagtacttcagtaagcctatatctgtaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="12090" stop="15610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12390" g_stop="12748" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12749" i_stop="13446" i_length="698">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13447" g_stop="13500" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="411" r_length="54" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13501" i_stop="14056" i_length="556">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14057" g_stop="14116" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="471" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14117" i_stop="15073" i_length="957">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15074" g_stop="15266" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="658" r_length="187" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E615517" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E615517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12390" e_stop="12748"/>
          <exon e_start="13447" e_stop="13500"/>
          <exon e_start="14057" e_stop="14116"/>
          <exon e_start="15074" e_stop="15266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAGGTTAACCCCTTCTTTTCTATTTTGGTAAAGTTTCTAGTTTTTTCATTAAAGAACTCAACCAATGTGAACCCGAAAGGGTTGCTGTAGGTTAATAACTAGTGTAGGAATAGTTAATTGTGGTTGTAATGAATTTCAGTGGTTTGAACTTGGTTCTTGTGAAGTTTCTAATATTGTCAAAAAAATCAACCAGTGTGAATTTCTGATTAAAGTGAAGAGGGTTGCAGTAGGTTAATGCCTAGTGTGTACGAATAGTTTATCTGGTAGTAATGAATTTCAGTCTGTGCTCATATTGGTATGAAATGGGTTCTTGTGAGGTGAATTTTATCCAAAAATTCTAAGTAAGTGAATTCGCTAAGTTAGGATAATGGAGGAGGAGGAGGTTAATTCTCAGTGTAAGGCTGTAAGCATAGTAAATTTATTAAGAATTCTGATAGTACTGGTATTTGATAGTGCTTGCTCATATTGGACTATTGGAGTGAAATGGGTCGGATAAGAACGCATATACAGGATTGGTATAGCCCAACTCCAACTAGTTTGGCAGTGAGGTTTAGTTAATTTATTGATTGATTGTCTGATTAGTGCTCAATGTGCTAGTTTTGCTTTATTTTTCTTTCAAATTGTTAGTTGTCTGTAACCCTTAAACTTCTTGTGGATTCTTCTGTGAATGGTAAACTGAACTTATACCTTTCTTATCACAGGCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAGGTAAATTGAGTGTGTAAAATTCAAAGCTTCTTCTGGTACATGCTAATTTGTTGACACTTCACAAAACACATTACTTGTCTGCTGCATTTGAGATACAATGTAGTAGCAGTTGCAGGGACTCTGAGTTTTTATTTTTCTGTGTAATATTAATGCTACTTGTGAATCACCAGAAGACTCGCTATTACATTGAAGAGTGAAATAAACAACACAGGTTGTTTACACTTTAAAGGACAAATTAAAGAAAGGAAAACGTTCTGATCTTTCTGAGGGATTTAAACTCTTTTTTTCTTGGAACTAGGCATATCTGAGATCTTATAATCTAGAATCAAAGAATCAGATACAGATATTCATCTGATTCTAGTTTTTCAGAAGCTGCAAGAGAGAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTTACAGGAAATTTCTTTGTAGAAAGTTTACAGCTCAATCAGCATAATGCACCTTAGAGATATATTAAAGTACTAAATTCTGAAGCATGCTTTAGGTTCCTTGTAGTTTCCTACATTCAATATGCAATATAGTGGACAACTTCCAGGTGGACTATCTTGTGCTGCCTTTTTGTGTTTGGAGTTTCTCTATAAATGATAGGAACAGTCTATCTAAATGAACGATATCCTTTAACTTTTCATGGTGAGGGAAAAATAAACTTTTAGTTCTTCAAAAGTAACCTAAAAAATTATTATTTGTGAAAAGAAGGCTGTTTAAGTACTTATTACATTTTAATCTTTAAAATATTCTGTAGAAAATCTAACAGTGTCAAAGCGCTATCCTTTGAAGTTTCTATTTCCCCTAGCATACAAATAACCTCAAATCCCAAAAAGTGTAAGAATTTCATTTACATAGATCAAGCATATAAAATTGGAAAGTAAAGTTGCCATCTATTTCCATCAGGATTCAATTCTGAGTTCCTTATTTCAGCTTATTGCCTGATCTGCATATTAGTATCCTTGGTGGCATGTAAGTGTCTAGGATCTTGATCATCTAATTGTGCATCCAATATAAGACCTTAGGAAATTGATGAGATTAGGGCTAAAGGTAAGAAAGAACTCCCAGTGTTGTCCTAAATTAGGAGAAATCACCTTCCCTTCTTATGAATAGAGAACGAGAGAGAACCATTATTGTGGTGAAAATTTTCCTCTAAACTTACTGTTACCTAAGAATATAAGAAGCATTTAAGGACATATCAGATGTCTCTATTTTCTTCATTCAGAACTTCAATAAGGCATTTGAAGAACCAAGAAATGAAACATGGTATGTCCTTGGTTCAGTGTTAACCTCTCTTTTTATTTGATGTAGTTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTTGGTTGAAACAATACAAGGTTCAGGCTTCAAGTTGCAAACATTGAATCTGAGCTTTCAGGATGAAGAAGATATTAGCTAAGTGGTGGCTTGTAGAATTCAGAGACATGATAGGCTGATATCTTTCACGGGCATCCTGAGAGATCTCT</genome_strand>
        <mrna_strand>AAAATCACTCTGAGGAATTAGCGTCGG--AAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGCAGAGCTAAATCTCATTCTCAAATTCCCCATTCTTCATCTAATGCAGTTCCCCAGCTTTTCCCAATTCAATTCCTTCGGTTTCAAAGTAACAGTGGCATTTGCGGTGGTTATTCTTGCTCTCCAAGTTCGGTGAAAGCGAAGGTACCATTGAGAACTACTAGGATATGTTCTGCAAATGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAGACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTCCTCACTATGTTCTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCTGTGACTAATGCTTTAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCCAGTTTGGTTGAAACAATACAAGGTTCAGGCTTCAAGTTGCAAACATTGAATCTGAGCTTTCAGGATGAAGAAGATATTAGCTAAGGGGTGGATTATAGAGTTCAGAGACATG--A---TGATATCTTTCACGAGCAT-CTTAAAGATGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E401795" ref_strand="+" ref_description="SGN-E401795 [PPC-5-G18]">
      <seq>aaatcgtcggaaaaaaaatatggcgaccgtctcagcattttccgtttgcagagctaaatctcattctcaaattccccattcttcatctaatgcagttccccagcttttcccaattcaattccttcggtttcaaagtaacagtggcatttgcggtggttattcttgctctccaagttcggtgaaagcgaaggtaccattgagaactactaggatatgttctgcaaatgaggaagatggtgctactgctgttgccgaagaagaatctgctgctcccactacatctgatcagactgtttctgtttccgtctccccttccgacgtcctcactatgttctttcaggcagaaggaacaatgaatgaagctgttattccttctgtgactaacgctttagaggatattgaaggcattacaggtctcaaaattcaagttgttgagggcattgcaagtgtcgagttaacaaagcaaacgacaatacaagctacaggggtggcttccagtttggttgaaacaatacaaggttcaggcttcaagttgcaaacattgaatctgagctttcaggatgaagaagatattagctaaggggtgaattatagagttcagagaaatggtgatatctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="12119" stop="15529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12406" g_stop="12748" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12749" i_stop="13446" i_length="698">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13447" g_stop="13500" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="394" r_length="54" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13501" i_stop="14056" i_length="556">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14057" g_stop="14116" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="454" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14117" i_stop="15073" i_length="957">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15074" g_stop="15244" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="620" r_length="166" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E401795" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E401795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12406" e_stop="12748"/>
          <exon e_start="13447" e_stop="13500"/>
          <exon e_start="14057" e_stop="14116"/>
          <exon e_start="15074" e_stop="15244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAGGTTAACCCCTTCTTTTCTATTTTGGTAAAGTTTCTAGTTTTTTCATTAAAGAACTCAACCAATGTGAACCCGAAAGGGTTGCTGTAGGTTAATAACTAGTGTAGGAATAGTTAATTGTGGTTGTAATGAATTTCAGTGGTTTGAACTTGGTTCTTGTGAAGTTTCTAATATTGTCAAAAAAATCAACCAGTGTGAATTTCTGATTAAAGTGAAGAGGGTTGCAGTAGGTTAATGCCTAGTGTGTACGAATAGTTTATCTGGTAGTAATGAATTTCAGTCTGTGCTCATATTGGTATGAAATGGGTTCTTGTGAGGTGAATTTTATCCAAAAATTCTAAGTAAGTGAATTCGCTAAGTTAGGATAATGGAGGAGGAGGAGGTTAATTCTCAGTGTAAGGCTGTAAGCATAGTAAATTTATTAAGAATTCTGATAGTACTGGTATTTGATAGTGCTTGCTCATATTGGACTATTGGAGTGAAATGGGTCGGATAAGAACGCATATACAGGATTGGTATAGCCCAACTCCAACTAGTTTGGCAGTGAGGTTTAGTTAATTTATTGATTGATTGTCTGATTAGTGCTCAATGTGCTAGTTTTGCTTTATTTTTCTTTCAAATTGTTAGTTGTCTGTAACCCTTAAACTTCTTGTGGATTCTTCTGTGAATGGTAAACTGAACTTATACCTTTCTTATCACAGGCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAGGTAAATTGAGTGTGTAAAATTCAAAGCTTCTTCTGGTACATGCTAATTTGTTGACACTTCACAAAACACATTACTTGTCTGCTGCATTTGAGATACAATGTAGTAGCAGTTGCAGGGACTCTGAGTTTTTATTTTTCTGTGTAATATTAATGCTACTTGTGAATCACCAGAAGACTCGCTATTACATTGAAGAGTGAAATAAACAACACAGGTTGTTTACACTTTAAAGGACAAATTAAAGAAAGGAAAACGTTCTGATCTTTCTGAGGGATTTAAACTCTTTTTTTCTTGGAACTAGGCATATCTGAGATCTTATAATCTAGAATCAAAGAATCAGATACAGATATTCATCTGATTCTAGTTTTTCAGAAGCTGCAAGAGAGAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTTACAGGAAATTTCTTTGTAGAAAGTTTACAGCTCAATCAGCATAATGCACCTTAGAGATATATTAAAGTACTAAATTCTGAAGCATGCTTTAGGTTCCTTGTAGTTTCCTACATTCAATATGCAATATAGTGGACAACTTCCAGGTGGACTATCTTGTGCTGCCTTTTTGTGTTTGGAGTTTCTCTATAAATGATAGGAACAGTCTATCTAAATGAACGATATCCTTTAACTTTTCATGGTGAGGGAAAAATAAACTTTTAGTTCTTCAAAAGTAACCTAAAAAATTATTATTTGTGAAAAGAAGGCTGTTTAAGTACTTATTACATTTTAATCTTTAAAATATTCTGTAGAAAATCTAACAGTGTCAAAGCGCTATCCTTTGAAGTTTCTATTTCCCCTAGCATACAAATAACCTCAAATCCCAAAAAGTGTAAGAATTTCATTTACATAGATCAAGCATATAAAATTGGAAAGTAAAGTTGCCATCTATTTCCATCAGGATTCAATTCTGAGTTCCTTATTTCAGCTTATTGCCTGATCTGCATATTAGTATCCTTGGTGGCATGTAAGTGTCTAGGATCTTGATCATCTAATTGTGCATCCAATATAAGACCTTAGGAAATTGATGAGATTAGGGCTAAAGGTAAGAAAGAACTCCCAGTGTTGTCCTAAATTAGGAGAAATCACCTTCCCTTCTTATGAATAGAGAACGAGAGAGAACCATTATTGTGGTGAAAATTTTCCTCTAAACTTACTGTTACCTAAGAATATAAGAAGCATTTAAGGACATATCAGATGTCTCTATTTTCTTCATTCAGAACTTCAATAAGGCATTTGAAGAACCAAGAAATGAAACATGGTATGTCCTTGGTTCAGTGTTAACCTCTCTTTTTATTTGATGTAGTTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTTGGTTGAAACAATACAAGGTTCAGGCTTCAAGTTGCAAACATTGAATCTGAGCTTTCAGGATGAAGAAGATATTAGCTAAGTGGTGGCTTGTAGAATTCAGAGACATGATAGGCTGATATCTTTC</genome_strand>
        <mrna_strand>AAAT-CGTCGG-AAA-AAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGCAGAGCTAAATCTCATTCTCAAATTCCCCATTCTTCATCTAATGCAGTTCCCCAGCTTTTCCCAATTCAATTCCTTCGGTTTCAAAGTAACAGTGGCATTTGCGGTGGTTATTCTTGCTCTCCAAGTTCGGTGAAAGCGAAGGTACCATTGAGAACTACTAGGATATGTTCTGCAAATGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAGACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTCCTCACTATGTTCTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAACAATGAATGAAGCTGTTATTCCTTCTGTGACTAACGCTTTAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTTGAGGGCATTGCAAGTGTCGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCCAGTTTGGTTGAAACAATACAAGGTTCAGGCTTCAAGTTGCAAACATTGAATCTGAGCTTTCAGGATGAAGAAGATATTAGCTAAGGGGTGAATTATAGAGTTCAGAGA-A--AT-GG-TGATATCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347255" ref_strand="+" ref_description="SGN-E347255 [cTOF-25-P9]">
      <seq>tcggaaaaaaaaaatatggcgaccgtctcagcattttccgtttgtagagccaaatctcattctcgaattccccattcttcatctaatgcaattccccagcttttcccaatgcaatttcttcggtgtcaaagcaacaggagcattggcggtggttattcttgctcttcaagttcggtgaaagcgaaggtacctttgagaactaccaggatatgttctgcaactgaggaagatggtgctactgctgttgccgaagaagaatctgctgctcccactacatctgatcaaactgtttctgtttccgtccccccttccgacgttctaactatgttctttcaggcagaaggaacaatgaatgaagctgctattccttccgtgactaactctttagaggatattgaaggcattacaggtctcaaaattcaagttgtcgagggcattgcaagtgtcgagttaacaaagcaaacgacaatacaagctacaggggtggcttcaagtttggttgaaacaatacaaggttcaggcttcaagttgcaaacatttgaatctgagctttcaggatgaagaagatattagctaaagtggtggcttgtagaattcagagacatgataggctgatatctttcacgggcatcctgagagatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="12113" stop="15563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12413" g_stop="12748" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="336" r_length="336" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12749" i_stop="13446" i_length="698">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13447" g_stop="13500" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="390" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13501" i_stop="14056" i_length="556">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14057" g_stop="14116" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="450" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14117" i_stop="15073" i_length="957">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15074" g_stop="15263" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="642" r_length="192" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E347255" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12413" e_stop="12748"/>
          <exon e_start="13447" e_stop="13500"/>
          <exon e_start="14057" e_stop="14116"/>
          <exon e_start="15074" e_stop="15263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAGGTTAACCCCTTCTTTTCTATTTTGGTAAAGTTTCTAGTTTTTTCATTAAAGAACTCAACCAATGTGAACCCGAAAGGGTTGCTGTAGGTTAATAACTAGTGTAGGAATAGTTAATTGTGGTTGTAATGAATTTCAGTGGTTTGAACTTGGTTCTTGTGAAGTTTCTAATATTGTCAAAAAAATCAACCAGTGTGAATTTCTGATTAAAGTGAAGAGGGTTGCAGTAGGTTAATGCCTAGTGTGTACGAATAGTTTATCTGGTAGTAATGAATTTCAGTCTGTGCTCATATTGGTATGAAATGGGTTCTTGTGAGGTGAATTTTATCCAAAAATTCTAAGTAAGTGAATTCGCTAAGTTAGGATAATGGAGGAGGAGGAGGTTAATTCTCAGTGTAAGGCTGTAAGCATAGTAAATTTATTAAGAATTCTGATAGTACTGGTATTTGATAGTGCTTGCTCATATTGGACTATTGGAGTGAAATGGGTCGGATAAGAACGCATATACAGGATTGGTATAGCCCAACTCCAACTAGTTTGGCAGTGAGGTTTAGTTAATTTATTGATTGATTGTCTGATTAGTGCTCAATGTGCTAGTTTTGCTTTATTTTTCTTTCAAATTGTTAGTTGTCTGTAACCCTTAAACTTCTTGTGGATTCTTCTGTGAATGGTAAACTGAACTTATACCTTTCTTATCACAGGCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAGGTAAATTGAGTGTGTAAAATTCAAAGCTTCTTCTGGTACATGCTAATTTGTTGACACTTCACAAAACACATTACTTGTCTGCTGCATTTGAGATACAATGTAGTAGCAGTTGCAGGGACTCTGAGTTTTTATTTTTCTGTGTAATATTAATGCTACTTGTGAATCACCAGAAGACTCGCTATTACATTGAAGAGTGAAATAAACAACACAGGTTGTTTACACTTTAAAGGACAAATTAAAGAAAGGAAAACGTTCTGATCTTTCTGAGGGATTTAAACTCTTTTTTTCTTGGAACTAGGCATATCTGAGATCTTATAATCTAGAATCAAAGAATCAGATACAGATATTCATCTGATTCTAGTTTTTCAGAAGCTGCAAGAGAGAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTTACAGGAAATTTCTTTGTAGAAAGTTTACAGCTCAATCAGCATAATGCACCTTAGAGATATATTAAAGTACTAAATTCTGAAGCATGCTTTAGGTTCCTTGTAGTTTCCTACATTCAATATGCAATATAGTGGACAACTTCCAGGTGGACTATCTTGTGCTGCCTTTTTGTGTTTGGAGTTTCTCTATAAATGATAGGAACAGTCTATCTAAATGAACGATATCCTTTAACTTTTCATGGTGAGGGAAAAATAAACTTTTAGTTCTTCAAAAGTAACCTAAAAAATTATTATTTGTGAAAAGAAGGCTGTTTAAGTACTTATTACATTTTAATCTTTAAAATATTCTGTAGAAAATCTAACAGTGTCAAAGCGCTATCCTTTGAAGTTTCTATTTCCCCTAGCATACAAATAACCTCAAATCCCAAAAAGTGTAAGAATTTCATTTACATAGATCAAGCATATAAAATTGGAAAGTAAAGTTGCCATCTATTTCCATCAGGATTCAATTCTGAGTTCCTTATTTCAGCTTATTGCCTGATCTGCATATTAGTATCCTTGGTGGCATGTAAGTGTCTAGGATCTTGATCATCTAATTGTGCATCCAATATAAGACCTTAGGAAATTGATGAGATTAGGGCTAAAGGTAAGAAAGAACTCCCAGTGTTGTCCTAAATTAGGAGAAATCACCTTCCCTTCTTATGAATAGAGAACGAGAGAGAACCATTATTGTGGTGAAAATTTTCCTCTAAACTTACTGTTACCTAAGAATATAAGAAGCATTTAAGGACATATCAGATGTCTCTATTTTCTTCATTCAGAACTTCAATAAGGCATTTGAAGAACCAAGAAATGAAACATGGTATGTCCTTGGTTCAGTGTTAACCTCTCTTTTTATTTGATGTAGTTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTTGGTTGAAACAATACAAGGTTCAGGCTTCAAGTTGCAAACA-TTGAATCTGAGCTTTCAGGATGAAGAAGATATTAGCT-AAGTGGTGGCTTGTAGAATTCAGAGACATGATAGGCTGATATCTTTCACGGGCATCCTGAGAGATC</genome_strand>
        <mrna_strand>TCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCCCCCCTTCCGACGTTCTAACTATGTTCTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTTGGTTGAAACAATACAAGGTTCAGGCTTCAAGTTGCAAACATTTGAATCTGAGCTTTCAGGATGAAGAAGATATTAGCTAAAGTGGTGGCTTGTAGAATTCAGAGACATGATAGGCTGATATCTTTCACGGGCATCCTGAGAGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E299062" ref_strand="+" ref_description="SGN-E299062 [cLET-42-G1]">
      <seq>aatctgctgctcccactacatctgatcaaactgtttctgtttccgtctccccttccgacgttctaactatgttctttcaggcagaaggaacaatgaatgaagctgctattccttccgtgactaactctttagaggatattgaaggcattacaggtctcaaaattcaagttgtcgagggcattgcaagtgtcgagttaacaaagcaaacgacaatacaagctacaggggtggcttcaagtttggttgaaacaatacaaggttcaggcttcaagttgcaaacattgaatctgagctttcaggatgaagaagatattagctaagtggtggcttgtagaattcagagacatgataggctgatatctttcacgggcatcctgagagatctctgtttatttgtatgccagtagtttcagtaagcctatatctgtaacatttttgtgttatgcagttctttgatctttttcttccttagcatatgttcctttccgcaacttataaaaatacttgtgaattactaatgatcagcagaatcattttgtttaaaaaaaacttataaaaatacttgtgaattacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="12369" stop="15721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12669" g_stop="12748" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12749" i_stop="13446" i_length="698">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13447" g_stop="13500" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="134" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13501" i_stop="14056" i_length="556">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14057" g_stop="14116" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="194" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14117" i_stop="15073" i_length="957">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15074" g_stop="15421" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="542" r_length="348" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E299062" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12669" e_stop="12748"/>
          <exon e_start="13447" e_stop="13500"/>
          <exon e_start="14057" e_stop="14116"/>
          <exon e_start="15074" e_stop="15421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAGGTTAACCCCTTCTTTTCTATTTTGGTAAAGTTTCTAGTTTTTTCATTAAAGAACTCAACCAATGTGAACCCGAAAGGGTTGCTGTAGGTTAATAACTAGTGTAGGAATAGTTAATTGTGGTTGTAATGAATTTCAGTGGTTTGAACTTGGTTCTTGTGAAGTTTCTAATATTGTCAAAAAAATCAACCAGTGTGAATTTCTGATTAAAGTGAAGAGGGTTGCAGTAGGTTAATGCCTAGTGTGTACGAATAGTTTATCTGGTAGTAATGAATTTCAGTCTGTGCTCATATTGGTATGAAATGGGTTCTTGTGAGGTGAATTTTATCCAAAAATTCTAAGTAAGTGAATTCGCTAAGTTAGGATAATGGAGGAGGAGGAGGTTAATTCTCAGTGTAAGGCTGTAAGCATAGTAAATTTATTAAGAATTCTGATAGTACTGGTATTTGATAGTGCTTGCTCATATTGGACTATTGGAGTGAAATGGGTCGGATAAGAACGCATATACAGGATTGGTATAGCCCAACTCCAACTAGTTTGGCAGTGAGGTTTAGTTAATTTATTGATTGATTGTCTGATTAGTGCTCAATGTGCTAGTTTTGCTTTATTTTTCTTTCAAATTGTTAGTTGTCTGTAACCCTTAAACTTCTTGTGGATTCTTCTGTGAATGGTAAACTGAACTTATACCTTTCTTATCACAGGCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAGGTAAATTGAGTGTGTAAAATTCAAAGCTTCTTCTGGTACATGCTAATTTGTTGACACTTCACAAAACACATTACTTGTCTGCTGCATTTGAGATACAATGTAGTAGCAGTTGCAGGGACTCTGAGTTTTTATTTTTCTGTGTAATATTAATGCTACTTGTGAATCACCAGAAGACTCGCTATTACATTGAAGAGTGAAATAAACAACACAGGTTGTTTACACTTTAAAGGACAAATTAAAGAAAGGAAAACGTTCTGATCTTTCTGAGGGATTTAAACTCTTTTTTTCTTGGAACTAGGCATATCTGAGATCTTATAATCTAGAATCAAAGAATCAGATACAGATATTCATCTGATTCTAGTTTTTCAGAAGCTGCAAGAGAGAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTTACAGGAAATTTCTTTGTAGAAAGTTTACAGCTCAATCAGCATAATGCACCTTAGAGATATATTAAAGTACTAAATTCTGAAGCATGCTTTAGGTTCCTTGTAGTTTCCTACATTCAATATGCAATATAGTGGACAACTTCCAGGTGGACTATCTTGTGCTGCCTTTTTGTGTTTGGAGTTTCTCTATAAATGATAGGAACAGTCTATCTAAATGAACGATATCCTTTAACTTTTCATGGTGAGGGAAAAATAAACTTTTAGTTCTTCAAAAGTAACCTAAAAAATTATTATTTGTGAAAAGAAGGCTGTTTAAGTACTTATTACATTTTAATCTTTAAAATATTCTGTAGAAAATCTAACAGTGTCAAAGCGCTATCCTTTGAAGTTTCTATTTCCCCTAGCATACAAATAACCTCAAATCCCAAAAAGTGTAAGAATTTCATTTACATAGATCAAGCATATAAAATTGGAAAGTAAAGTTGCCATCTATTTCCATCAGGATTCAATTCTGAGTTCCTTATTTCAGCTTATTGCCTGATCTGCATATTAGTATCCTTGGTGGCATGTAAGTGTCTAGGATCTTGATCATCTAATTGTGCATCCAATATAAGACCTTAGGAAATTGATGAGATTAGGGCTAAAGGTAAGAAAGAACTCCCAGTGTTGTCCTAAATTAGGAGAAATCACCTTCCCTTCTTATGAATAGAGAACGAGAGAGAACCATTATTGTGGTGAAAATTTTCCTCTAAACTTACTGTTACCTAAGAATATAAGAAGCATTTAAGGACATATCAGATGTCTCTATTTTCTTCATTCAGAACTTCAATAAGGCATTTGAAGAACCAAGAAATGAAACATGGTATGTCCTTGGTTCAGTGTTAACCTCTCTTTTTATTTGATGTAGTTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTTGGTTGAAACAATACAAGGTTCAGGCTTCAAGTTGCAAACATTGAATCTGAGCTTTCAGGATGAAGAAGATATTAGCTAAGTGGTGGCTTGTAGAATTCAGAGACATGATAGGCTGATATCTTTCACGGGCATCCTGAGAGATCTCTGTTTATTTGTATGCCAGTAGTTTCAGTAAGCCTATATCTGTAACATTTTTGTGTTATGCAGTTCTTTGATCTTTTTCTTCCTTAGCATATGTTCCTTTCCGCAACTTATAAAAATACTTGTGAATTACTAATGATCAGCAGAATCATTTTGTTTA</genome_strand>
        <mrna_strand>AATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTTGGTTGAAACAATACAAGGTTCAGGCTTCAAGTTGCAAACATTGAATCTGAGCTTTCAGGATGAAGAAGATATTAGCTAAGTGGTGGCTTGTAGAATTCAGAGACATGATAGGCTGATATCTTTCACGGGCATCCTGAGAGATCTCTGTTTATTTGTATGCCAGTAGTTTCAGTAAGCCTATATCTGTAACATTTTTGTGTTATGCAGTTCTTTGATCTTTTTCTTCCTTAGCATATGTTCCTTTCCGCAACTTATAAAAATACTTGTGAATTACTAATGATCAGCAGAATCATTTTGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E318370" ref_strand="+" ref_description="SGN-E318370 [cTOA-29-J19]">
      <seq>gaacaatgaatgaagctgctattccttccgtgactaactctttagaggtaaattgagtgtgtaaaattcaaagcttcttctggtacatgctaatttgttgacacttcacaaaacacattacttgtctgctgcatttgagatacaatgtagtagcagttgcagggactctgagtttttatttttctgtgtaatattaatgctacttgtgaatcaccagaagactcgctattacattgaagagtgaaataaacaacacaggttgtttacactttaaaggacaaattaaagaaaggaaaacgttctgatctttctgagggatttaaactctttttttcttggaactaggcatatctgagatcttataatctagaatcaaagaatcagatacagatattcatctgattctagtttttcagaagctgcaagagagaactattgattttgtgaatgtttgatggagagctatatctctttctccacctctatcaaaacatcagattttagctaataattggaattgaagaataattgcaggttgccctaattaaaaaagaaaacaagtagttgtagtttgacctttatcgtctgtccatatgtatacaggatattgaaggcattacaggtctcaaaattcaagttgtcgaaggcattgcaagtgtcgaggtgattcacatatataatgcttctcttacattgacttattagcctattctgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="13154" stop="14469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13454" g_stop="14169" g_length="716"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="716" r_length="716" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E318370" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13454" e_stop="14169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAGGTAAATTGAGTGTGTAAAATTCAAAGCTTCTTCTGGTACATGCTAATTTGTTGACACTTCACAAAACACATTACTTGTCTGCTGCATTTGAGATACAATGTAGTAGCAGTTGCAGGGACTCTGAGTTTTTATTTTTCTGTGTAATATTAATGCTACTTGTGAATCACCAGAAGACTCGCTATTACATTGAAGAGTGAAATAAACAACACAGGTTGTTTACACTTTAAAGGACAAATTAAAGAAAGGAAAACGTTCTGATCTTTCTGAGGGATTTAAACTCTTTTTTTCTTGGAACTAGGCATATCTGAGATCTTATAATCTAGAATCAAAGAATCAGATACAGATATTCATCTGATTCTAGTTTTTCAGAAGCTGCAAGAGAGAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTT</genome_strand>
        <mrna_strand>GAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAGGTAAATTGAGTGTGTAAAATTCAAAGCTTCTTCTGGTACATGCTAATTTGTTGACACTTCACAAAACACATTACTTGTCTGCTGCATTTGAGATACAATGTAGTAGCAGTTGCAGGGACTCTGAGTTTTTATTTTTCTGTGTAATATTAATGCTACTTGTGAATCACCAGAAGACTCGCTATTACATTGAAGAGTGAAATAAACAACACAGGTTGTTTACACTTTAAAGGACAAATTAAAGAAAGGAAAACGTTCTGATCTTTCTGAGGGATTTAAACTCTTTTTTTCTTGGAACTAGGCATATCTGAGATCTTATAATCTAGAATCAAAGAATCAGATACAGATATTCATCTGATTCTAGTTTTTCAGAAGCTGCAAGAGAGAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAAGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E266644" ref_strand="+" ref_description="SGN-E266644 [cLEI-5-E18]">
      <seq>gaactattgattttgtgaatgttggatggagagctatatctctttctccacctctatcaaaacatcagattttagctaataattggaattgaagaataattgcaggttgccctaattaaaaaagaaaacaagtagttgtagtttgacctttatcgtctgtccatatgtatacaggatattgaaggcattacaggtctcaaaattcaagttgtcgagggcattgcaagtgtcgaggtgattcacatatataatgcttctcttacattgacttattagcctattctgttacaggaaatttctttgtagaaagtttacagctcaatcagcataatgcaccttagagatatattaaagtactaaattctgaagcatgctttaggttccttgtagtttcctacattcaatatgcaatatagtggacaacttccaggtggactatcttgtgctgcctttttgtgtttggagtttctctataaatgataggaacagtctatctaaatgaacgatatcctttaacttttgatggtgagggaaaaataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="13583" stop="14723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13883" g_stop="14423" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E266644" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13883" e_stop="14423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTTACAGGAAATTTCTTTGTAGAAAGTTTACAGCTCAATCAGCATAATGCACCTTAGAGATATATTAAAGTACTAAATTCTGAAGCATGCTTTAGGTTCCTTGTAGTTTCCTACATTCAATATGCAATATAGTGGACAACTTCCAGGTGGACTATCTTGTGCTGCCTTTTTGTGTTTGGAGTTTCTCTATAAATGATAGGAACAGTCTATCTAAATGAACGATATCCTTTAACTTTTCATGGTGAGGGAAAAATAAA</genome_strand>
        <mrna_strand>GAACTATTGATTTTGTGAATGTTGGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTTACAGGAAATTTCTTTGTAGAAAGTTTACAGCTCAATCAGCATAATGCACCTTAGAGATATATTAAAGTACTAAATTCTGAAGCATGCTTTAGGTTCCTTGTAGTTTCCTACATTCAATATGCAATATAGTGGACAACTTCCAGGTGGACTATCTTGTGCTGCCTTTTTGTGTTTGGAGTTTCTCTATAAATGATAGGAACAGTCTATCTAAATGAACGATATCCTTTAACTTTTGATGGTGAGGGAAAAATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E266510" ref_strand="+" ref_description="SGN-E266510 [cLEI-5-E22]">
      <seq>gaactattgattttgtgaatgtttgatggagagctatatctctttctccacctctatcaaaacatcagattttagctaataattggaattgaagaataattgcaggttgccctaattaaaaaagaaaacaagtagttgtagtttgacctttatcgtctgtccatatgtatacaggatattgaaggcattacaggtctcaaaattcaagttgtcgagggcattgcaagtgtcgaggtgattcacatatataatgcttctcttacattgacttattagcctattctgttacaggaaatttctttgtagaaagtttacagctcaatcagcataatgcaccttagagatatattaaagtactaaattctgaagcatgctttaggttccttgtaggttcctacattcaatatgcaatatagtggacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="13583" stop="14606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13883" g_stop="14306" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E266510" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13883" e_stop="14306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTTACAGGAAATTTCTTTGTAGAAAGTTTACAGCTCAATCAGCATAATGCACCTTAGAGATATATTAAAGTACTAAATTCTGAAGCATGCTTTAGGTTCCTTGTAGTTTCCTACATTCAATATGCAATATAGTGGACAAC</genome_strand>
        <mrna_strand>GAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTTACAGGAAATTTCTTTGTAGAAAGTTTACAGCTCAATCAGCATAATGCACCTTAGAGATATATTAAAGTACTAAATTCTGAAGCATGCTTTAGGTTCCTTGTAGGTTCCTACATTCAATATGCAATATAGTGGACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E293058" ref_strand="+" ref_description="SGN-E293058 [cLET-12-A22]">
      <seq>gctattccttccgtgactaactctttagaggatattgaaggcattacaggtctcaaaattcaagttgtcgagggcattgcaagtgtcgagttaacaaagcaaacgacaatacaagctacaggggtggcttcaagtttggttgaaacaatacaaggttcaggcttcaagttgcaaacattgaatctgagctttcaggatgaagaagatattagctaagtggtggcttgtagaattcagagacatgataggctgatatctttcacgggcatcctgagagatctctgtttatttgtatgccagtagtttcagtaagcctatatctgtaacatttttgtgttatgcagttctttgatctttttcttccttagcatatgttcctttccgcaacttataaaaatacttgtgaattactaatgatcagcagaatcattttgtttacttgttgaaacaagtggtatacgattggaaaaagtacttcttatgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="13730" stop="15767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14057" g_stop="14116" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="90" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14117" i_stop="15073" i_length="957">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15074" g_stop="15467" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="484" r_length="394" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="485" polyA_stop="494"/>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E293058" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14057" e_stop="14116"/>
          <exon e_start="15074" e_stop="15467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTTACAGGAAATTTCTTTGTAGAAAGTTTACAGCTCAATCAGCATAATGCACCTTAGAGATATATTAAAGTACTAAATTCTGAAGCATGCTTTAGGTTCCTTGTAGTTTCCTACATTCAATATGCAATATAGTGGACAACTTCCAGGTGGACTATCTTGTGCTGCCTTTTTGTGTTTGGAGTTTCTCTATAAATGATAGGAACAGTCTATCTAAATGAACGATATCCTTTAACTTTTCATGGTGAGGGAAAAATAAACTTTTAGTTCTTCAAAAGTAACCTAAAAAATTATTATTTGTGAAAAGAAGGCTGTTTAAGTACTTATTACATTTTAATCTTTAAAATATTCTGTAGAAAATCTAACAGTGTCAAAGCGCTATCCTTTGAAGTTTCTATTTCCCCTAGCATACAAATAACCTCAAATCCCAAAAAGTGTAAGAATTTCATTTACATAGATCAAGCATATAAAATTGGAAAGTAAAGTTGCCATCTATTTCCATCAGGATTCAATTCTGAGTTCCTTATTTCAGCTTATTGCCTGATCTGCATATTAGTATCCTTGGTGGCATGTAAGTGTCTAGGATCTTGATCATCTAATTGTGCATCCAATATAAGACCTTAGGAAATTGATGAGATTAGGGCTAAAGGTAAGAAAGAACTCCCAGTGTTGTCCTAAATTAGGAGAAATCACCTTCCCTTCTTATGAATAGAGAACGAGAGAGAACCATTATTGTGGTGAAAATTTTCCTCTAAACTTACTGTTACCTAAGAATATAAGAAGCATTTAAGGACATATCAGATGTCTCTATTTTCTTCATTCAGAACTTCAATAAGGCATTTGAAGAACCAAGAAATGAAACATGGTATGTCCTTGGTTCAGTGTTAACCTCTCTTTTTATTTGATGTAGTTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTTGGTTGAAACAATACAAGGTTCAGGCTTCAAGTTGCAAACATTGAATCTGAGCTTTCAGGATGAAGAAGATATTAGCTAAGTGGTGGCTTGTAGAATTCAGAGACATGATAGGCTGATATCTTTCACGGGCATCCTGAGAGATCTCTGTTTATTTGTATGCCAGTAGTTTCAGTAAGCCTATATCTGTAACATTTTTGTGTTATGCAGTTCTTTGATCTTTTTCTTCCTTAGCATATGTTCCTTTCCGCAACTTATAAAAATACTTGTGAATTACTAATGATCAGCAGAATCATTTTGTTTACTTGTTGAAACAAGTGGTATACGATTGGAAAAGGTACTTCTTATGA</genome_strand>
        <mrna_strand>GATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTTGGTTGAAACAATACAAGGTTCAGGCTTCAAGTTGCAAACATTGAATCTGAGCTTTCAGGATGAAGAAGATATTAGCTAAGTGGTGGCTTGTAGAATTCAGAGACATGATAGGCTGATATCTTTCACGGGCATCCTGAGAGATCTCTGTTTATTTGTATGCCAGTAGTTTCAGTAAGCCTATATCTGTAACATTTTTGTGTTATGCAGTTCTTTGATCTTTTTCTTCCTTAGCATATGTTCCTTTCCGCAACTTATAAAAATACTTGTGAATTACTAATGATCAGCAGAATCATTTTGTTTACTTGTTGAAACAAGTGGTATACGATTGGAAAAAGTACTTCTTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E365769" ref_strand="+" ref_description="SGN-E365769 [cLPT-8-N20]">
      <seq>tcaagctgacatagcaccactgatgtccactcttcttggtctgccatgtcctgtcaactcggttggcaatctgcctcttcagtacatgaatctgaacaaggcagaagaagttgaagctgtgctggccaatacgaagcaaatcctcaatcagttccttcgaaagtcacagttaaagcaatcgacctcattatacatcaagcctttcaagcccttggctagttattcatcactattgcgtgaaattgagcaactgatttctctcaaagagtatgaaactgcaatgaaattatctgaacagcttaggagcttggcacttcaaggacttcactatttccagacatatgattggctgatgctgatgactgtaatcactcttggctatgttggttggatgatctatgtgatactccatgtcttgcaatcttatacatccctacctgcaaatatttttagcaaggagcaagtgcctagtccaagaagtacagctaagatacatcttttaggagggttgttgatgggagtagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="18505" stop="21574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18805" g_stop="18829" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18830" i_stop="18933" i_length="104">
            <donor d_prob="0.881" d_score="0.00"/>
            <acceptor a_prob="0.966" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18934" g_stop="19008" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="100" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19009" i_stop="19159" i_length="151">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19160" g_stop="19226" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="167" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19227" i_stop="19607" i_length="381">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19608" g_stop="19930" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="490" r_length="323" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19931" i_stop="21238" i_length="1308">
            <donor d_prob="0.985" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="21239" g_stop="21274" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="526" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E365769" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18805" e_stop="18829"/>
          <exon e_start="18934" e_stop="19008"/>
          <exon e_start="19160" e_stop="19226"/>
          <exon e_start="19608" e_stop="19930"/>
          <exon e_start="21239" e_stop="21274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGCTGACATAGCACCACTGATGGTCGATTACCTTGTCCTCTTCTGACAGTCCTATCTTTGAAGTGTCTTTCTATCATATCAACTTCGTCTAAAGTCTGACTCTGATATGATCTCTAAAAATTGCAGTCCACTCTTCTTGGTCTGCCATGTCCTATCAACTCAGTTGGCAATCTGCCTCTTCAGTACATGAATCTGAACAAGGTAGCTGCATTACTATAAGTTCTCTGTCTATTTTGCACTGTACGACTGTGTGATGGATTGGGAGAGATATACTGGTTTGCTGGTTCTTTGGGGCTATTTTGTTCTTTGTATTGAGATAGAATGCAGGTCTTAAAATCACTTTTATGTCCAGGCAGAAGAAGTTGAAGCTGTGCTGGCCAATACGAAGCAAATCCTCAATCAGTTCCTTCGAAAGTCACGTATCCTTCCCTATAACTTAGATTGTTTTTCACTTCTAATTTCATTCTGCCTCACTCATCTTACATGTTATTTCCTAATTTTCTTTTTGTTGCAATTCACAACTTTCAGAGTTTTAAATGTCAGTTAAGATAGAACCTTATTAAAAGAAAATGTCAGTCAAAATAGAAGTAACTGGTAGAACGATTTAAGTATAGCATATACCAGAATTAGGACAAGTTACCAATTATTAGACCAATAGAGGGGCAAAGTGATAAAATTAATTCCTGTGCTGTCATTCCAAACTGCTTCATCAATGTAACTGGGTTCTGGGGCTTGTCCTGTTTTCACATTCTAAATTGATTTTTGGTTTCATCTTTTGAGCATCCTTGACAAATATGTAGAGTTAAAGCAGTCGACCTCATTATACATCAAGCCTTTCAAGCCCTTGGCTAGTTATTCATCACTATTGCGTGAAATTGAGCAACTGATTTCTCTCAAAGAGTATGAAACTGCAGTGAAATTATCTGAACATCTTAGGAGCTTGGCACTTCAAGGACTTCACTATTTTCAGACATATGATTGGCTGATGCTGATGACTGTAATCACTCTTGGCTATGTTGGTTGGATGATCTATGTCATACTCCATATCTTGCAATCTTATACATCCCTACCTGCAAATATTTTTAGCAAGGACCAAGTGCCTAATCCAAGAAGTACAGTTAAGGTACCTGTTTTGCTCTATATGCACGTGCTGTTGTGTATTTCTTTGTCTGTGTTGGTTAGAAGAGGGTTGTAAAGGGAAGGTTCAAAATAAATTATATGTCTGTTTGGTGTTGAAAGTGTGATAGATTAGTAGGAAAAAGGGAGGAGGAAATTGACATATAAAAGCATTTATGTATGAAAAGTACTCGTGTTGTGCAAGTTCAAGTAATTTTCTCTATTTATACTAAAACCAACAAAAATATCTTGACTGTTGATATATGATTTTAATTCGAGGCGGAGATATACAAAGGGTTGTCCCGTTGTTTTGCTACCTCTTTGAGATAGAGTACATCTAGTGACAAATATTGATATGCCAAAATTACACATGTTCCTAAATCATATAATCTATTTCATAGCTCCAGAAAGTTCAAAGGTGAGACCATAATCAGTTTATCTATGCATTGTAAGTGGGAGGAGCAGGTTTTCCACCAAAACTATAGAAAGTAAAGACTTACTAAGGAAAGAAATTGAAATGTAAGAGCAAAGTGGGAGTAATGACACCTGATGTTCATTTGGACATTAATTCTCTAGGTTTTTTTTCTTTCAACCCCCAAAGGTTTCTCCTTTCTTCTTTTTCTAAAATGTCCCATGAAAGTCATACCCATCTTGGAGACCATATTTGGTTATATTTTGTCTCTATTATGCCTGATCTCCAAAGCTATTGTATCTAGTGTTGTCAAAGGCACGCTAAAGCCTGATATGAGGCTCTAAACGTGTTGAGTGCTTCGCGTCACTTAGTATGTGCTTCACTGTCGTCATCAAGGTTTTAAGACATACAAACCTTGCCAATGAGTGGTTCTTGAAGAGACGGCACTAAAAAATTAATCTTTCAGTGTCTTTGTATGTTATATATGTTATTTGTGCTTATAATATTAGTCTTGGACTAAACATATGTAATTTTGTATCCATTTGCGTCTTTTTCATAAAAGCCACACTTTATTTGCGCTTTGCGCTTAAAGACCCAACAGACGTTAGAGTTATTTTTGTGTTTTTTGCTTTTCATAACACTGATGAATCAAGTGTTCATCTGGGACTTCTCATCAGGGAAATTCTTAAAAACTTATATTATCACGGTCCTCTATTGGCGTATTCATGCCTCTTCTTATTATACTATTTTGGCATTTAGAAATTGATGTTATTAGCACAAGTGTCTTCCTCCCATAAAAATAGATGGATATTCTTGACCGTCATTCGTAAGGTGATACTAGAAAGAATTGCTATCTGACCAATTGATTCCCATGTTCTTGCTTATATTCTTTTTCTATGGCAGATACATCTTTTAGGAGGGTTGTTGATGGGAGTAGCG</genome_strand>
        <mrna_strand>TCAAGCTGACATAGCACCACTGATG........................................................................................................TCCACTCTTCTTGGTCTGCCATGTCCTGTCAACTCGGTTGGCAATCTGCCTCTTCAGTACATGAATCTGAACAAG.......................................................................................................................................................GCAGAAGAAGTTGAAGCTGTGCTGGCCAATACGAAGCAAATCCTCAATCAGTTCCTTCGAAAGTCAC.............................................................................................................................................................................................................................................................................................................................................................................................AGTTAAAGCAATCGACCTCATTATACATCAAGCCTTTCAAGCCCTTGGCTAGTTATTCATCACTATTGCGTGAAATTGAGCAACTGATTTCTCTCAAAGAGTATGAAACTGCAATGAAATTATCTGAACAGCTTAGGAGCTTGGCACTTCAAGGACTTCACTATTTCCAGACATATGATTGGCTGATGCTGATGACTGTAATCACTCTTGGCTATGTTGGTTGGATGATCTATGTGATACTCCATGTCTTGCAATCTTATACATCCCTACCTGCAAATATTTTTAGCAAGGAGCAAGTGCCTAGTCCAAGAAGTACAGCTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACATCTTTTAGGAGGGTTGTTGATGGGAGTAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E438770" ref_strand="+" ref_description="SGN-E438770 [cSTA-9-F15]">
      <seq>gtttggctttcaactactcatagaacagagaagcaggaattgttagtcctccaccaactggtgaattggtccattgctggcttctcgatgatactcccactcttttcagctactggtctcttgtccaggctgacttccattttccttggcgttgcacctcccttcctgcttctatcaatcggctatgaagcagtcttctatggtgctctcagtcttgcacttatagcatggatactggcggaaaatgcttatctccatataagcaatttcagatcatcagctccagtcaaatccatggaggatgataataggtgtctggagttatccgatatgaggatcccattaacctttatggtctttttcaatattgcattctttggaactggtaattttgcaagtattgcaagttttgagatctcttctgtgtatcggttcatcactattttcagtccttttctgatggcggcgttacttattttcaagttgttgataccattcatacttgtcatatgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="21811" stop="24301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22111" g_stop="22189" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22190" i_stop="23199" i_length="1010">
            <donor d_prob="0.986" d_score="0.94"/>
            <acceptor a_prob="0.963" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23200" g_stop="23302" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="182" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23303" i_stop="23393" i_length="91">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23394" g_stop="23562" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="351" r_length="169" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23563" i_stop="23743" i_length="181">
            <donor d_prob="0.465" d_score="0.98"/>
            <acceptor a_prob="0.419" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23744" g_stop="23842" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="450" r_length="99" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23843" i_stop="23940" i_length="98">
            <donor d_prob="0.894" d_score="0.90"/>
            <acceptor a_prob="0.913" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23941" g_stop="23999" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="509" r_length="59" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E438770" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E438770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22111" e_stop="22189"/>
          <exon e_start="23200" e_stop="23302"/>
          <exon e_start="23394" e_stop="23562"/>
          <exon e_start="23744" e_stop="23842"/>
          <exon e_start="23941" e_stop="23999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGGCTTTCAACTATTCATAGAACAGAGAAGCAGGAATTATTAGTCCTCCACCAACTGTTGAATTGGTCCATAGCTGGTATTCTTTTTTTCTTTTCTCCGTATGCTAGTGTAGCTCAGTCTTAGAATTGTTCTCGGATGTCCTATGAACAGAATTGATGTAGCCTTTACACCCATTTATTCCTTCAATTTTTTGTTTTGTTAATGCAATGGGATGTTAAACAGTGAATTCGAAAATGGTGAGATTTTACATTTTCTTAATAATTGTTCTAGTAAAAGGCATGCTATCCAGACTTACTTTTCAAAATTTCTCTTCTCCTACTGGGTGTCTTACAGTTGCCCTCCTCACACAGCTGCTTGTCTTCATCAGCATTGGTGTCCCATGTCAAATGTGTAAGACATGAATATGGCATTAACTCAAACAAGAGTCTGTGTCATGTAGGTTGCATCCAGTCATACAACAGCTACACCTCAGTCCCAATCAAAATGGGATCGACTATATGAATGCTCACCGATTATGTTCCTCATTCATGTTCATCTCAGGCCAACATTTTACAAAATTTCAAATAACTAACTAAAAGTTTTCTATATTTCCTACTGGCATAAGAATCTCTAATAGGGCTTAAAAAACTCTGAGAAAGCACAAGACCTAAAAACTTGATAACATTACTAGAATAAATACTCAACTAATTGGTATCACCTATATAGATCATTTTCTTCTATTGTGCCCATCCACAAATTACAAAGAGATTGTAAAACTTCATTGACTCCTTCCATGTGATTTTATGAATAATTAGTAGGCTGTATCCCTTCATAAAGAAATAATATCTTTGGTAGACGTCAACTAGTTTATGGTAATGTATCGCGTTGTTGCATATCAGACTGTCCTTTGTTACTCTTGCCCTCATTTTCGGGCTCTTTTGGTTCATTTTAGTGATAAACTTTTATGAAGCTTTTCCTGACTAATTTTGTTTCTTTATAACTATTTGTTTCACTATTTTCTGTTCTTCAGCCTGAAATTTCACATATTTTGTTTTCTTTGTGAACATTTTAACAACCCTGTATTCATCATTTGACTTGTTTCTTTAGGCTTCTCGATGATACTCCCACTCTTTTCAGCTACTGGTCTCTTATCCAGGCTGACTTCCATTTTCCTTGGCGTTGCACCTCCCTTCCTGCTTCTATCAATCGGGTATCTCCATCATTTTGTTGCTTAGGCTAGGAGTAAATTCAATTTTATAACTTTATGAGTCAGAATCTATAAGCTTTTGAATCTCCTGCAGTTATGAAGCAGTCTTCTATGGTGCTCTCAGTCTTGCACTTATAGCATGGATACTGGCGGAAAATGCTTATCTCCATATAAGCAAGTTCAGATCATCAGCTCCAGTCAAATCCATGGAGGATGATAATAGGTGTCTGGAGTTATCCGATATGAGGATCCCATTAACTTTTGTAAGTTTTACGTTCTGTTTAGCTTAATGATGTTCTACTTATGGAAAAAAGAAAGACAGTGACATTGTCTTTAGCCTTGTTAATTTAACACTTTTGGGGTGTAAGCATCTAGCTCTGTTGTCTTTCTATATATCCAAATAGTGAAGTGTCTTAAATTGCTGATGAAATTTCTTCTTTTTAGATGGTCTTTTTCAATATTGCATTCTTTGGAACTGGTAATTTTGCAAGTATTGCAAGTTTTGAGATCTCCTCCGTGTATCGATTCATTACAATTTTCAGTGTAAGTGGAACTGAACATCCTTGTTTATGAATCCTTTGTTTCTTATTTTGCCTTTCATTTGCATATGGTGACAGATGCGATTGTTCCTTTTTTTGCAGCCTTTTCTGATGGCGGCATTACTTATTTTCAAGCTGTTGATACCATTCATACTTGTCAT</genome_strand>
        <mrna_strand>GTTTGGCTTTCAACTACTCATAGAACAGAGAAGCAGGAATTGTTAGTCCTCCACCAACTGGTGAATTGGTCCATTGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCTCGATGATACTCCCACTCTTTTCAGCTACTGGTCTCTTGTCCAGGCTGACTTCCATTTTCCTTGGCGTTGCACCTCCCTTCCTGCTTCTATCAATCGG...........................................................................................CTATGAAGCAGTCTTCTATGGTGCTCTCAGTCTTGCACTTATAGCATGGATACTGGCGGAAAATGCTTATCTCCATATAAGCAATTTCAGATCATCAGCTCCAGTCAAATCCATGGAGGATGATAATAGGTGTCTGGAGTTATCCGATATGAGGATCCCATTAACCTTT.....................................................................................................................................................................................ATGGTCTTTTTCAATATTGCATTCTTTGGAACTGGTAATTTTGCAAGTATTGCAAGTTTTGAGATCTCTTCTGTGTATCGGTTCATCACTATTTTCAGT..................................................................................................CCTTTTCTGATGGCGGCGTTACTTATTTTCAAGTTGTTGATACCATTCATACTTGTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E439349" ref_strand="+" ref_description="SGN-E439349 [cSTA-11-F12]">
      <seq>gtttggctttcaactactcatagaacagagaagcaggaattgttagtcctccaccaactggtgaattggtccattgctggcttctcgatgatactcccactcttttcagctactggtctcttgtccaggctgacttccattttccttggcgttgcacctcccttcctgcttctatcaatcggctatgaagcagtcttctatggtgctctcagtcttgcacttatagcatggatactggcggaaaatgcttatctccatataagcaatttcagatcatcagctccagtcaaatccatggaggatgataataggtgtctggagttatccgatatgaggatcccattaacctttatggtctttttcaatattgcattctttggaactggtaattttgcaagtattgcaagttttgagatctcttctgtgtatcggttcatcactattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="21811" stop="24139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22111" g_stop="22189" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22190" i_stop="23199" i_length="1010">
            <donor d_prob="0.986" d_score="0.94"/>
            <acceptor a_prob="0.963" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23200" g_stop="23302" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="182" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23303" i_stop="23393" i_length="91">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23394" g_stop="23562" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="351" r_length="169" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23563" i_stop="23743" i_length="181">
            <donor d_prob="0.465" d_score="0.98"/>
            <acceptor a_prob="0.419" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23744" g_stop="23839" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="447" r_length="96" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E439349" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E439349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22111" e_stop="22189"/>
          <exon e_start="23200" e_stop="23302"/>
          <exon e_start="23394" e_stop="23562"/>
          <exon e_start="23744" e_stop="23839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGGCTTTCAACTATTCATAGAACAGAGAAGCAGGAATTATTAGTCCTCCACCAACTGTTGAATTGGTCCATAGCTGGTATTCTTTTTTTCTTTTCTCCGTATGCTAGTGTAGCTCAGTCTTAGAATTGTTCTCGGATGTCCTATGAACAGAATTGATGTAGCCTTTACACCCATTTATTCCTTCAATTTTTTGTTTTGTTAATGCAATGGGATGTTAAACAGTGAATTCGAAAATGGTGAGATTTTACATTTTCTTAATAATTGTTCTAGTAAAAGGCATGCTATCCAGACTTACTTTTCAAAATTTCTCTTCTCCTACTGGGTGTCTTACAGTTGCCCTCCTCACACAGCTGCTTGTCTTCATCAGCATTGGTGTCCCATGTCAAATGTGTAAGACATGAATATGGCATTAACTCAAACAAGAGTCTGTGTCATGTAGGTTGCATCCAGTCATACAACAGCTACACCTCAGTCCCAATCAAAATGGGATCGACTATATGAATGCTCACCGATTATGTTCCTCATTCATGTTCATCTCAGGCCAACATTTTACAAAATTTCAAATAACTAACTAAAAGTTTTCTATATTTCCTACTGGCATAAGAATCTCTAATAGGGCTTAAAAAACTCTGAGAAAGCACAAGACCTAAAAACTTGATAACATTACTAGAATAAATACTCAACTAATTGGTATCACCTATATAGATCATTTTCTTCTATTGTGCCCATCCACAAATTACAAAGAGATTGTAAAACTTCATTGACTCCTTCCATGTGATTTTATGAATAATTAGTAGGCTGTATCCCTTCATAAAGAAATAATATCTTTGGTAGACGTCAACTAGTTTATGGTAATGTATCGCGTTGTTGCATATCAGACTGTCCTTTGTTACTCTTGCCCTCATTTTCGGGCTCTTTTGGTTCATTTTAGTGATAAACTTTTATGAAGCTTTTCCTGACTAATTTTGTTTCTTTATAACTATTTGTTTCACTATTTTCTGTTCTTCAGCCTGAAATTTCACATATTTTGTTTTCTTTGTGAACATTTTAACAACCCTGTATTCATCATTTGACTTGTTTCTTTAGGCTTCTCGATGATACTCCCACTCTTTTCAGCTACTGGTCTCTTATCCAGGCTGACTTCCATTTTCCTTGGCGTTGCACCTCCCTTCCTGCTTCTATCAATCGGGTATCTCCATCATTTTGTTGCTTAGGCTAGGAGTAAATTCAATTTTATAACTTTATGAGTCAGAATCTATAAGCTTTTGAATCTCCTGCAGTTATGAAGCAGTCTTCTATGGTGCTCTCAGTCTTGCACTTATAGCATGGATACTGGCGGAAAATGCTTATCTCCATATAAGCAAGTTCAGATCATCAGCTCCAGTCAAATCCATGGAGGATGATAATAGGTGTCTGGAGTTATCCGATATGAGGATCCCATTAACTTTTGTAAGTTTTACGTTCTGTTTAGCTTAATGATGTTCTACTTATGGAAAAAAGAAAGACAGTGACATTGTCTTTAGCCTTGTTAATTTAACACTTTTGGGGTGTAAGCATCTAGCTCTGTTGTCTTTCTATATATCCAAATAGTGAAGTGTCTTAAATTGCTGATGAAATTTCTTCTTTTTAGATGGTCTTTTTCAATATTGCATTCTTTGGAACTGGTAATTTTGCAAGTATTGCAAGTTTTGAGATCTCCTCCGTGTATCGATTCATTACAATTTTC</genome_strand>
        <mrna_strand>GTTTGGCTTTCAACTACTCATAGAACAGAGAAGCAGGAATTGTTAGTCCTCCACCAACTGGTGAATTGGTCCATTGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCTCGATGATACTCCCACTCTTTTCAGCTACTGGTCTCTTGTCCAGGCTGACTTCCATTTTCCTTGGCGTTGCACCTCCCTTCCTGCTTCTATCAATCGG...........................................................................................CTATGAAGCAGTCTTCTATGGTGCTCTCAGTCTTGCACTTATAGCATGGATACTGGCGGAAAATGCTTATCTCCATATAAGCAATTTCAGATCATCAGCTCCAGTCAAATCCATGGAGGATGATAATAGGTGTCTGGAGTTATCCGATATGAGGATCCCATTAACCTTT.....................................................................................................................................................................................ATGGTCTTTTTCAATATTGCATTCTTTGGAACTGGTAATTTTGCAAGTATTGCAAGTTTTGAGATCTCTTCTGTGTATCGGTTCATCACTATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E342211" ref_strand="+" ref_description="SGN-E342211 [cTOF-10-N2]">
      <seq>tttggctttcaactattcatagaacagagaagcaggaattattagtcctccaccaactgttgaattggtccatagctggcttctcgatgatacctcccacctcttttcagctactggtctcttatccaggctgacttccacttttccttggcgttgcacctcccttcctgcttctatcaatcggttatgaagcagtcttctatggtgctctcagtcttgcacttatagcatggatactggcggaaaatgcttatctccatataagcaagttcagatcatcagctccagtcaaatccatggaggatgataataggtgtctggagttatccgatatgaggatcccattaacttttatggtctttttcaatattgcattctttggaactggtaattttgcaagtattgcaagttttgagatctcctccgtgtatcgattcattacaattttcagtccttttctgatggcggcattacttattttcaagctgttgataccattcatacttgtcatatgtgcgttcagtgcaatcacaaaattggtgcaagttccattgttgggatgctattttctggntgatcttgtgctctgatgtaatgacaatccatttcttcttcctggtccgaaataaaggaagctggatggaaattggcaacagcattagccatttcggaattatgagtgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="21812" stop="25621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22112" g_stop="22189" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22190" i_stop="23199" i_length="1010">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23200" g_stop="23302" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="184" r_length="106" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23303" i_stop="23393" i_length="91">
            <donor d_prob="0.963" d_score="0.96"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23394" g_stop="23562" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="353" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23563" i_stop="23743" i_length="181">
            <donor d_prob="0.465" d_score="1.00"/>
            <acceptor a_prob="0.419" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23744" g_stop="23842" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="452" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23843" i_stop="23940" i_length="98">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23941" g_stop="23999" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="511" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="24000" i_stop="24908" i_length="909">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24909" g_stop="25014" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="618" r_length="107" r_score="0.981"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="25015" i_stop="25254" i_length="240">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25255" g_stop="25321" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="685" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E342211" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22112" e_stop="22189"/>
          <exon e_start="23200" e_stop="23302"/>
          <exon e_start="23394" e_stop="23562"/>
          <exon e_start="23744" e_stop="23842"/>
          <exon e_start="23941" e_stop="23999"/>
          <exon e_start="24909" e_stop="25014"/>
          <exon e_start="25255" e_stop="25321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGCTTTCAACTATTCATAGAACAGAGAAGCAGGAATTATTAGTCCTCCACCAACTGTTGAATTGGTCCATAGCTGGTATTCTTTTTTTCTTTTCTCCGTATGCTAGTGTAGCTCAGTCTTAGAATTGTTCTCGGATGTCCTATGAACAGAATTGATGTAGCCTTTACACCCATTTATTCCTTCAATTTTTTGTTTTGTTAATGCAATGGGATGTTAAACAGTGAATTCGAAAATGGTGAGATTTTACATTTTCTTAATAATTGTTCTAGTAAAAGGCATGCTATCCAGACTTACTTTTCAAAATTTCTCTTCTCCTACTGGGTGTCTTACAGTTGCCCTCCTCACACAGCTGCTTGTCTTCATCAGCATTGGTGTCCCATGTCAAATGTGTAAGACATGAATATGGCATTAACTCAAACAAGAGTCTGTGTCATGTAGGTTGCATCCAGTCATACAACAGCTACACCTCAGTCCCAATCAAAATGGGATCGACTATATGAATGCTCACCGATTATGTTCCTCATTCATGTTCATCTCAGGCCAACATTTTACAAAATTTCAAATAACTAACTAAAAGTTTTCTATATTTCCTACTGGCATAAGAATCTCTAATAGGGCTTAAAAAACTCTGAGAAAGCACAAGACCTAAAAACTTGATAACATTACTAGAATAAATACTCAACTAATTGGTATCACCTATATAGATCATTTTCTTCTATTGTGCCCATCCACAAATTACAAAGAGATTGTAAAACTTCATTGACTCCTTCCATGTGATTTTATGAATAATTAGTAGGCTGTATCCCTTCATAAAGAAATAATATCTTTGGTAGACGTCAACTAGTTTATGGTAATGTATCGCGTTGTTGCATATCAGACTGTCCTTTGTTACTCTTGCCCTCATTTTCGGGCTCTTTTGGTTCATTTTAGTGATAAACTTTTATGAAGCTTTTCCTGACTAATTTTGTTTCTTTATAACTATTTGTTTCACTATTTTCTGTTCTTCAGCCTGAAATTTCACATATTTTGTTTTCTTTGTGAACATTTTAACAACCCTGTATTCATCATTTGACTTGTTTCTTTAGGCTTCTCGATGATA-CTCCCA-CTCTTTTCAGCTACTGGTCTCTTATCCAGGCTGACTTCCA-TTTTCCTTGGCGTTGCACCTCCCTTCCTGCTTCTATCAATCGGGTATCTCCATCATTTTGTTGCTTAGGCTAGGAGTAAATTCAATTTTATAACTTTATGAGTCAGAATCTATAAGCTTTTGAATCTCCTGCAGTTATGAAGCAGTCTTCTATGGTGCTCTCAGTCTTGCACTTATAGCATGGATACTGGCGGAAAATGCTTATCTCCATATAAGCAAGTTCAGATCATCAGCTCCAGTCAAATCCATGGAGGATGATAATAGGTGTCTGGAGTTATCCGATATGAGGATCCCATTAACTTTTGTAAGTTTTACGTTCTGTTTAGCTTAATGATGTTCTACTTATGGAAAAAAGAAAGACAGTGACATTGTCTTTAGCCTTGTTAATTTAACACTTTTGGGGTGTAAGCATCTAGCTCTGTTGTCTTTCTATATATCCAAATAGTGAAGTGTCTTAAATTGCTGATGAAATTTCTTCTTTTTAGATGGTCTTTTTCAATATTGCATTCTTTGGAACTGGTAATTTTGCAAGTATTGCAAGTTTTGAGATCTCCTCCGTGTATCGATTCATTACAATTTTCAGTGTAAGTGGAACTGAACATCCTTGTTTATGAATCCTTTGTTTCTTATTTTGCCTTTCATTTGCATATGGTGACAGATGCGATTGTTCCTTTTTTTGCAGCCTTTTCTGATGGCGGCATTACTTATTTTCAAGCTGTTGATACCATTCATACTTGTCATGTAAGTACAACTTGCAAATTTTCCTTCTTAACAGTTCGAATGGAAAACTACTGTAATTCAATGATTGTGGTGGAAATCTTTTCTTGGAGTTTCTAGGGCTTGGAGGTTGTTTTTCTCCCTCAAATTCATCCAAATTAGATGTGACAATTACCGACCACTCTTACATATCTAAAATATTGGTTTGAGGGATTGCCTGTTGCAGCGCTCAACTTTCACCTGTTGAGACACTCCTCGCTGCCTGGAGCAACTAGAAGATATTGTTAAAGCGTTGCAGCGCCCAAATTTCGACCGGTGCTACGGTGGCTGCTGTTTTCCACGAATATATCTAAATTATTTCCAACTCCAAATTGTTCTCCACTTGCTTCAATCCACTCCTCCTCATTTCCAAACATCCATATTACTTTCCAAATACAACTTTTGAGTGCTGAACACTCTTGTGGCAACTTAACCGCGTTATTAGTTGTGTTAGCCATAACTAGAGTGTAGAAATCTTCAGGGTATTTTACCATCTTTCTGTGTTGGGTGGTTGGGTTCTTCTTGGTATTACCTTGCAGCCTTTACATGTAGGCTGTAGCCCTGCAATTTCTTCTAGTGTGGGTGAAGTTCATTTGGTCATGATTACTCCTCTCTTAAAAGTTATTCAGTGCATTCCCTGTTTTAAAGTAATTGTTGGCTAATTCAAACTTTTAAGATAACAAAGTGCAGAGCACAAGAACTACCTGATCTTCACTGAGAACAAACTGCAGTATAGGAACCTATATTTATACGTCAAGAAGCCTTTAGAATTTTTGGAGACCAAGAAAATTTGTATTTGATATGCAAGTAGAAATATTTTGGAATTCTTGGTCTTGCTGAGATCAGTTGTGTACCATGGATGACTTTTATTTTTTTGTTGTGCATTAACTGCAGATGTGCGTTCAGTGCAATCACAAAATTGGTGCAAGTTCCATTGTTGGGATGCTATTTTCTGG-TGATCTTGTGCTCTGATGTAATGACAATCCATTTCTTCTTCCTGGTAAGACACTATTATTCCTCCTATGGTGCAATTCTCATATGTTTCTCCACCTACTTTCCATCCAATGTGTCTTGTTTGAAAAACTTAGGATTCCAGTATCAATATGCTCTTCTCTGTCATAATCTTCAACAGCTTTGAATTTTTCTGTTTCATGCTTCCGACTGTTTTATCTCCAGAAACATGATTCAGGGGGTTCATCATGGTTAGGATTCATCTTACTTGTTTTCTGATTGGTAATAGGTCCGAAATAAAGGAAGCTGGATGGAAATTGGCAACAGCATTAGCCATTTCGGAATTATGAGTGCTC</genome_strand>
        <mrna_strand>TTTGGCTTTCAACTATTCATAGAACAGAGAAGCAGGAATTATTAGTCCTCCACCAACTGTTGAATTGGTCCATAGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCTCGATGATACCTCCCACCTCTTTTCAGCTACTGGTCTCTTATCCAGGCTGACTTCCACTTTTCCTTGGCGTTGCACCTCCCTTCCTGCTTCTATCAATCGG...........................................................................................TTATGAAGCAGTCTTCTATGGTGCTCTCAGTCTTGCACTTATAGCATGGATACTGGCGGAAAATGCTTATCTCCATATAAGCAAGTTCAGATCATCAGCTCCAGTCAAATCCATGGAGGATGATAATAGGTGTCTGGAGTTATCCGATATGAGGATCCCATTAACTTTT.....................................................................................................................................................................................ATGGTCTTTTTCAATATTGCATTCTTTGGAACTGGTAATTTTGCAAGTATTGCAAGTTTTGAGATCTCCTCCGTGTATCGATTCATTACAATTTTCAGT..................................................................................................CCTTTTCTGATGGCGGCATTACTTATTTTCAAGCTGTTGATACCATTCATACTTGTCAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGCGTTCAGTGCAATCACAAAATTGGTGCAAGTTCCATTGTTGGGATGCTATTTTCTGGNTGATCTTGTGCTCTGATGTAATGACAATCCATTTCTTCTTCCTG................................................................................................................................................................................................................................................GTCCGAAATAAAGGAAGCTGGATGGAAATTGGCAACAGCATTAGCCATTTCGGAATTATGAGTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E559422" ref_strand="+" ref_description="SGN-E559422 [18915]">
      <seq>tcatttctgccttctacagcacccaatccacaagattcagcccatcatcctcaaaagaaatcctctcagtgtttacttctcttcagacacaactgtttgaagcagttgctgaactacaagaaatacttgatcttcaagatgagaagcaaaaagtcacccgtgaaattaggtcaaatgattctgcaattcttgcctttgccaacaaactcaaaggagctgagcgtgttcttgacaatcttgttgatgattacgctgactatcgtcgtcccaaacgggccaagttggaaaacgataccgaagaatcttcagtaacatctgtggcgactcagttgaaattatctgacattttgtcatatgctcataggataagttacactacttttgcacctcctgaattcggtggtggacaggctcctctccggggagctctcccaccggctccacaggatgagcaattgcgtgcatctcagttatatatttttgctgatcttgatgttggtttacctaaaacagatgaaagccagcgagaatattttggagccactcattgaacctccggcagaaagtaacgcacttgccaatctatcatcaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="27029" stop="28223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27329" g_stop="27923" g_length="595"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="595" r_length="595" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E559422" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E559422" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27329" e_stop="27923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTCTGCCTTCTACAGCACCAGTTCCACAAGATTCCAGCCCATCGTCCTCAAAAGAAATCCTCTCAGCGTTTACTTCTCTTCAGACACAGCTGTTTGAAGCAGTTGCTGAACTACAAGAAATACTTGATCTTCAAGATGAGAAGCAAAAAGTCACCCGTGAAATTAGGTTAAATGATTCTGCAATTCTTGCCTTCGCCAACAAACTCAAAGGAGCTGAGCATGTTCTTGACAATCTTGTTGATGACTATGCTGACTATCGTCGCCCCAAACGGGCCAAGTTGGAAAACGATACTGAAGAATCTTCATTAACATCTGTGGCGACCCAGTTGAAATTATCTGACGTTTTGTCATATGCTCATAGGATAAGTTACACTACTTTTGCACCACCTGAATTTGGTGGCGGACAGGCTCCTCTCCGGGGAGCTCTCCCACCGGCTCCACAGGATGAGCAATTGCGTGCATCACAGTTATATATTTTTGCTGATCTTGATGTTGGTTTACCTAAAACAGATGAAGGCAAG-GAGAATATTTTGGAGCCACTCATTGAGCCTCCGGCAGAAAGTAATCCACTTGCCTATCTATCATCAATTC</genome_strand>
        <mrna_strand>TCATTTCTGCCTTCTACAGCACCCAATCCACAAGATT-CAGCCCATCATCCTCAAAAGAAATCCTCTCAGTGTTTACTTCTCTTCAGACACAACTGTTTGAAGCAGTTGCTGAACTACAAGAAATACTTGATCTTCAAGATGAGAAGCAAAAAGTCACCCGTGAAATTAGGTCAAATGATTCTGCAATTCTTGCCTTTGCCAACAAACTCAAAGGAGCTGAGCGTGTTCTTGACAATCTTGTTGATGATTACGCTGACTATCGTCGTCCCAAACGGGCCAAGTTGGAAAACGATACCGAAGAATCTTCAGTAACATCTGTGGCGACTCAGTTGAAATTATCTGACATTTTGTCATATGCTCATAGGATAAGTTACACTACTTTTGCACCTCCTGAATTCGGTGGTGGACAGGCTCCTCTCCGGGGAGCTCTCCCACCGGCTCCACAGGATGAGCAATTGCGTGCATCTCAGTTATATATTTTTGCTGATCTTGATGTTGGTTTACCTAAAACAGATGAAAGCCAGCGAGAATATTTTGGAGCCACTCATTGAACCTCCGGCAGAAAGTAACGCACTTGCCAATCTATCATCAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E306002" ref_strand="+" ref_description="SGN-E306002 [cLEY-17-P9]">
      <seq>ttaaataaaaaataaaaacatatatcattgaatgaagagaagtgagaaatatgaagaccccattgaagccctccagctatttcccatcccccatttacctatttccctctcctttttttagccatttttttctattaactttcccttctcaaacactgagctgaaaaacagagcaaatgggtttaactcttctgctttttctttgcttctctgttatcttaactccttctttatcacagcaccattcgccgctaaatactgcttattaccggagatcatgtccaagatttgaacaaattatgcaagaaaccactacaaacaaacagatcacttcacctactacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="33239" stop="34182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33539" g_stop="33882" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E306002" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33539" e_stop="33882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAATAAAAAATAAAAACATATATCATTGAATGAAGAGAAGTGAGAAATATGAAGACCCCATTGAAGCCCTCCAGCTATTTCCCATCCCCCATTTACCTATTTCCCTCTCCTTTTTTTAGCCATTTTTTTCTATTAACTTTCCCTTCTCAAACACTGAGCTGAAAAACAGAGCAAATGGGTTTAACTCTTCTGCTTTTTCTTTGCTTCTCTGTTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCTTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCTACTACC</genome_strand>
        <mrna_strand>TTAAATAAAAAATAAAAACATATATCATTGAATGAAGAGAAGTGAGAAATATGAAGACCCCATTGAAGCCCTCCAGCTATTTCCCATCCCCCATTTACCTATTTCCCTCTCCTTTTTTTAGCCATTTTTTTCTATTAACTTTCCCTTCTCAAACACTGAGCTGAAAAACAGAGCAAATGGGTTTAACTCTTCTGCTTTTTCTTTGCTTCTCTGTTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCTTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCTACTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E604189" ref_strand="+" ref_description="SGN-E604189 [74321]">
      <seq>gtgagaaatatgaagaccccattgaagccctccagctatttcccatccccacatcttacctatttccctctcctttttgtagccatttttttctaaatccaaacactaagactgagctgaaaaatagcttagcaaaacacagagcaaatgggtttaactcttctgctttttcttttcttctctgtcttcttaactccttctttatcacagcgacattcgccgctaaatactgcttattaccggagatcatgtccaagatttgaacaaattatgcaagaaaccactacaaacaaacagatcacttcacctactaccgccgccgccaccctccgcctcttcttccacgactgcttcgtcggcggctgcgacgcctctgtcctcgtctcctccactcctttcaacaaagctgaacgtgacgcagaaatcaacctttcactccccggcgatgggttcgatgtagtcgtacgcgccaaaacggcgcttgaacttgcttgccccggagttgtctcttgctccgacattctcgccgtcgctgcccggaatctcgttgttcaaaccggaggcccgttttatccagttaatttgggccgtaaagattcttttatttcaaaagcttcgttggttgaaggaaatctngcccgacccacaatgtcgatggatcaaatcattaacatttccgggtcaggagggtttacggtacaggaaatggtagcattatccggtgctcacacaattgggttttcacattgtaaagagttcagctcaaatctttacaatttacaacaaaacttcgcaataatgatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="33280" stop="34670"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33580" g_stop="34370" g_length="791"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="805" r_length="805" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E604189" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E604189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33580" e_stop="34370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAGAAATATGAAGACCCCATTGAAGCCCTCCAGCTATTTCCCATCCCC-CAT-TTACCTATTTCCCTCTCCTTTTTTTAGCCATTTTTTTCT--AT-TAA---CTTTCCCT--TCTCAAACACTGAGCTG-AAAA-ACAGAGCAAATGGGTTTAACTCTTCTGCTTTTTCTTTGCTTCTCTGTTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCTTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCTACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATCCTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTACTTCTAAAGCTTCGTTGGTTGAAGGAAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATACAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCGTTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAA-TTACAACAAAACTTCCCAAT-ATGATCC</genome_strand>
        <mrna_strand>GTGAGAAATATGAAGACCCCATTGAAGCCCTCCAGCTATTTCCCATCCCCACATCTTACCTATTTCCCTCTCCTTTTTGTAGCCATTTTTTTCTAAATCCAAACACTAAGACTGAGCTGAAAAATAGCTTAGCAAAACACAGAGCAAATGGGTTTAACTCTTCTGCTTTTTCTTTTCTTCTCTGTCTTCTTAACTCCTTCTTTATCACAGCGACATTCGCCGCTAAATACTGCTTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCTACTACCGCCGCCGCCACCCTCCGCCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCCTCTGTCCTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTTTCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGAGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTATTTCAAAAGCTTCGTTGGTTGAAGGAAATCTNGCCCGACCCACAATGTCGATGGATCAAATCATTAACATTTCCGGGTCAGGAGGGTTTACGGTACAGGAAATGGTAGCATTATCCGGTGCTCACACAATTGGGTTTTCACATTGTAAAGAGTTCAGCTCAAATCTTTACAATTTACAACAAAACTTCGCAATAATGATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731244" ref_strand="+" ref_description="SGN-E731244 [LA26CC07]">
      <seq>attgaagccctccagctatttcccatcccccatttacctatttccctctcctttttttagccatttttttctattaactttcccttctcaaacactgagctgaaaaacagagcaaatgggtttaactcttctgctttttctttgcttctctgttatcttaactccttctttatcacagcaccattcgccgctaaatactgcttattaccggagatcatgtccaagatttgaacaaattatgcaagaaaccactacaaacaaacagatcacttcacctactaccgccgccgctaccctccgtctcttcttccacgactgcttcgtcggcggctgcgacgcgtccatcctcgtctcctccactcctttcaacaaagctgaacgtgacgcagaaatcaacctatcactccccggcgatgggttcgatgtagtcgtacgcgccaaaacggcgcttgaacttgcttgccccggcgttgtctcttgctccgacattctcgccgtcgctgcccggaatctcgttgttcaaaccggaggcccgttttatccagttaatttgggccgtaaagattcttttacttctaaagcttcgttggttgaaggaaatctgccccgacccacaatgtcgatggatcaaatcatacaaattttcgggtcaagagggttttcggtaccggaaatggtagcgttatccggtgctcacacaattgggttttcccattgtaaagagttcagctcaaatctttacaattacaacaaaacttcccaatatgatccttcttacnatcccagatttgctcaagctttgagaaatgcttgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="33300" stop="34714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33600" g_stop="34414" g_length="815"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="815" r_length="815" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E731244" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33600" e_stop="34414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGAAGCCCTCCAGCTATTTCCCATCCCCCATTTACCTATTTCCCTCTCCTTTTTTTAGCCATTTTTTTCTATTAACTTTCCCTTCTCAAACACTGAGCTGAAAAACAGAGCAAATGGGTTTAACTCTTCTGCTTTTTCTTTGCTTCTCTGTTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCTTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCTACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATCCTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTACTTCTAAAGCTTCGTTGGTTGAAGGAAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATACAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCGTTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCTTCTTACAATCCCAGATTTGCTCAAGCTTTGAGAAATGCTTGTA</genome_strand>
        <mrna_strand>ATTGAAGCCCTCCAGCTATTTCCCATCCCCCATTTACCTATTTCCCTCTCCTTTTTTTAGCCATTTTTTTCTATTAACTTTCCCTTCTCAAACACTGAGCTGAAAAACAGAGCAAATGGGTTTAACTCTTCTGCTTTTTCTTTGCTTCTCTGTTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCTTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCTACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATCCTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTACTTCTAAAGCTTCGTTGGTTGAAGGAAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATACAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCGTTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCTTCTTACNATCCCAGATTTGCTCAAGCTTTGAGAAATGCTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E729517" ref_strand="+" ref_description="SGN-E729517 [LA21BC02]">
      <seq>cgatgacctccagctatttcccatcccccgtttacctatttccctctcctttttttaggcatttgttttctattaactttcccttctcaaacacgtgagctgaaaaacagagcaaatgggtttaactcttctgctttttctttgcttctctgttatcttaactccttctttatcacagcaccattcgccgctaaatactgcttattaccggagatcatgtccaagatttgaacaaattatgcaagaaaccactacaaacaaacagatcacttcacctactaccgccgccgctaccctccgtctcttcttccacgactgcttcgtcggcggctgcgacgcgtccatcctcgtctcctccactcctttcaacaaagctgaacgtgacgcagaaatcaacctatcactccccggcgatgggttcgatgtagtcgtacgcgccaaaacggcgcttgaacttgcttgccccggcgttgtctcttgctccgacattctcgccgtcgctgcccggaatctcgttgttcaaaccggaggcccgttttatccagttaatttgggccgtaaagattcttttacttctaaagcttcgttggttgaaggaaatctgccccgacccacaatgtcgatggatcaaatcatacaaattttcgggtcaagagggttttcggtaccggaaatggtagcgttatccggtgctcacacaattgggttttcccattgtaaagagttcagctcaaatctttacaattacaacaaaacttcccaatatgatccttcttacaatcccagatttgctcaagctttgagaaatgcttgtaataatttccagaaagatccaacattgtccgttttcaacgacatcatgactccgaataagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="33303" stop="34774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33602" g_stop="34474" g_length="873"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="875" r_length="875" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E729517" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>873</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33602" e_stop="34474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGCCCTCCAGCTATTTCCCATCCCCCATTTACCTATTTCCCTCTCCTTTTTTTAGCCATTT-TTTTCTATTAACTTTCCCTTCTCAAACAC-TGAGCTGAAAAACAGAGCAAATGGGTTTAACTCTTCTGCTTTTTCTTTGCTTCTCTGTTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCTTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCTACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATCCTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTACTTCTAAAGCTTCGTTGGTTGAAGGAAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATACAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCGTTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCTTCTTACAATCCCAGATTTGCTCAAGCTTTGAGAAATGCTTGTAATAATTTCCAGAAAGATCCAACATTGTCCGTTTTCAACGACATCATGACTCCGAATAAGT</genome_strand>
        <mrna_strand>CGATGACCTCCAGCTATTTCCCATCCCCCGTTTACCTATTTCCCTCTCCTTTTTTTAGGCATTTGTTTTCTATTAACTTTCCCTTCTCAAACACGTGAGCTGAAAAACAGAGCAAATGGGTTTAACTCTTCTGCTTTTTCTTTGCTTCTCTGTTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCTTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCTACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATCCTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTACTTCTAAAGCTTCGTTGGTTGAAGGAAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATACAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCGTTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCTTCTTACAATCCCAGATTTGCTCAAGCTTTGAGAAATGCTTGTAATAATTTCCAGAAAGATCCAACATTGTCCGTTTTCAACGACATCATGACTCCGAATAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E689773" ref_strand="+" ref_description="SGN-E689773 [LH_Ea01M11]">
      <seq>tcctcgtgccgaattcggcacgaggtgaagccctccagctatttcccatccccacttctcccatttacctatttccctctcctttttttagccatttttttctaatactttccctttctctaacactcagctgaaaaacagagcaaatggggttaactcttcttctttttctttgcttcgctgttatcttaactccttctttatcacagcaccattcgccgctaaatactgcgtattaccggagatcatgtccaagatttgaacaaattatgcaagaaaccactacaaacaaacagatcacttcaccaactaccgccgccgctaccctccgtctcttcttccacgactgcttcgtcggcggctgcgacgcgtccatactcgtctcctccactcctttcaacaaagctgaacgtgacgcagaaatcaacctatcactccccggcgatgggttcgatgtagtcgtacgcgccaaaacggcgcttgaacttgcttgccccggcgttgtctcttgctccgacattctcgccgtcgctgcccggaatctcgttgttcaaaccggaggcccgttttatccagttaagttgggccgtaaagattcttttacttcaaaagcttcgttggttgaagggaatctgccccgacccacaatgtcgatggatcaaatcattaaaattttcgggtcaagagggttttcggtaccggaaatggtagcattatccggtgctcacacaattgggttttcccattgtaaagagttcagctcaaatctttacaattacaacaaaacttcccaatatgatcccttctacaatcccagatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="33315" stop="34690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33628" g_stop="34390" g_length="763"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="822" r_length="763" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E689773" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33628" e_stop="34390"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCATTTACCTATTTCCCTCTCCTTTTTTTAGCCATTTTTTTCTATTAACTTTCCCTT-CTCAAACACTGAGCTGAAAAACAGAGCAAATGGGTTTAACTCTTCTGCTTTTTCTTTGCTTCTCTGTTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCTTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCTACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATCCTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTACTTCTAAAGCTTCGTTGGTTGAAGGAAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATACAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCGTTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCTTCTTACAATCCCAGATTTG</genome_strand>
        <mrna_strand>CCCATTTACCTATTTCCCTCTCCTTTTTTTAGCCATTTTTTTCTAAT-ACTTTCCCTTTCTCTAACACTCAGCTGAAAAACAGAGCAAATGGGGTTAACTCTTCTTCTTTTTCTTTGCTTCGCTGTTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCGTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCAACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATACTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAAGTTGGGCCGTAAAGATTCTTTTACTTCAAAAGCTTCGTTGGTTGAAGGGAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATTAAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCATTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCCTTCTACAATCCCAGATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E339637" ref_strand="+" ref_description="SGN-E339637 [cTOE-16-N16]">
      <seq>ctatttccctctcctttttttagccatttttttctattaactttcccttctcaaacactgagctgaaaaacagagcaaatgggtttaactcttctgctttttctttgcttctctgttatcttaactccttctttatcacagcaccattcgccgctaaatactgcttattaccggagatcatgtccaagatttgaacaaattatgcaagaaaccactacaaacaaacagatcacttcacctactaccgccgccgctaccctccgtctcttcttccacgactgcttcgtcggcggctgcgacgcgtccatcctcgtctcctccactcctttcaacaaagctgaacgtgacgcagaaatcaacctatcactccccggcgatgggttcgatgtagtcgtacgcgccaaaacggcgcttgaacttgcttgccccggcgttgtctcttgctccgacattctcgccgtcgctgcccggaatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="33337" stop="34413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33637" g_stop="34113" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E339637" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339637" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33637" e_stop="34113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTTCCCTCTCCTTTTTTTAGCCATTTTTTTCTATTAACTTTCCCTTCTCAAACACTGAGCTGAAAAACAGAGCAAATGGGTTTAACTCTTCTGCTTTTTCTTTGCTTCTCTGTTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCTTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCTACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATCCTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTC</genome_strand>
        <mrna_strand>CTATTTCCCTCTCCTTTTTTTAGCCATTTTTTTCTATTAACTTTCCCTTCTCAAACACTGAGCTGAAAAACAGAGCAAATGGGTTTAACTCTTCTGCTTTTTCTTTGCTTCTCTGTTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCTTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCTACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATCCTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E266228" ref_strand="+" ref_description="SGN-E266228 [cLEI-3-I22]">
      <seq>ctttttttagccatttttttctattaactttcccttctcaaacactgagctgaaaaacagagcaaatgggtttaactcttctgctttttctttgcttctctgttatcttaactccttctttatcacagcaccattcgccgctaaatactgcttattaccggagatcatgtccaagatttgaacaaattatgcaagaaaccactacaaacaaacagatcacttcacctactaccgccgccgctaccctccgtctcttcttccacgactgcttcgtcggcggctgcgacgcgtccatcctcgtctcctccactcctttcaacaaagctgaacgtgacgcagaaatcaacctatcactccccggcgatgggttcgatgtagtcgtacgcgccaaaacggcgcttgaacttgcttgccccggcgttgtctcttgctccgacattctcgccgtcgctgcccggaatctcgttgttcaaaccggaggcccgttttatccagttaatttgggccgtaaagattcttttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="33350" stop="34473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33650" g_stop="34173" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="524" r_length="524" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E266228" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266228" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33650" e_stop="34173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTTTAGCCATTTTTTTCTATTAACTTTCCCTTCTCAAACACTGAGCTGAAAAACAGAGCAAATGGGTTTAACTCTTCTGCTTTTTCTTTGCTTCTCTGTTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCTTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCTACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATCCTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTACT</genome_strand>
        <mrna_strand>CTTTTTTTAGCCATTTTTTTCTATTAACTTTCCCTTCTCAAACACTGAGCTGAAAAACAGAGCAAATGGGTTTAACTCTTCTGCTTTTTCTTTGCTTCTCTGTTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCTTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCTACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATCCTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728514" ref_strand="+" ref_description="SGN-E728514 [LA18AC10]">
      <seq>ttaactttcccttctcaaacactgagctgaaaaacagagcaaatgggtttaactcttctgctttttctttgcttctctgttatcttaactccttctttatcacagcaccattcgccgctaaatactgcttattaccggagatcatgtccaagatttgaacaaattatgcaagaaaccactacaaacaaacagatcacttcacctactaccgccgccgctaccctccgtctcttcttccacgactgcttcgtcggcggctgcgacgcgtccatcctcgtctcctccactcctttcaacaaagctgaacgtgacgcagaaatcaacctatcactccccggcgatgggttcgatgtagtcgtacgcgccaaaacggcgcttgaacttgcttgccccggcgttgtctcttgctccgacattctcgccgtcgctgcccggaatctcgttgttcaaaccggaggcccgttttatccagttaatttgggccgtaaagattcttttacttctaaagcttcgttggttgaaggaaatctgccccgacccacaatgtcgatggatcaaatcatacaaattttcgggtcaagagggttttcggtaccggaaatggtagcgttatccggtgctcacacaattgggttttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="33373" stop="34611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33673" g_stop="34311" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="639" r_length="639" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E728514" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728514" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33673" e_stop="34311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAACTTTCCCTTCTCAAACACTGAGCTGAAAAACAGAGCAAATGGGTTTAACTCTTCTGCTTTTTCTTTGCTTCTCTGTTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCTTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCTACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATCCTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTACTTCTAAAGCTTCGTTGGTTGAAGGAAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATACAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCGTTATCCGGTGCTCACACAATTGGGTTTTCC</genome_strand>
        <mrna_strand>TTAACTTTCCCTTCTCAAACACTGAGCTGAAAAACAGAGCAAATGGGTTTAACTCTTCTGCTTTTTCTTTGCTTCTCTGTTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCTTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCTACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATCCTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTACTTCTAAAGCTTCGTTGGTTGAAGGAAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATACAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCGTTATCCGGTGCTCACACAATTGGGTTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E704534" ref_strand="+" ref_description="SGN-E704534 [FA24CC04]">
      <seq>gaggctcaaacactgagctgaaaaacagagcaaatgggtttaactcttctgctttttctttgcttctctgttatcttaactccttctttatcacagcaccattcgccgctaaatactgcttattaccggagatcatgtccaagatttgaacaaattatgcaagaaaccactacaaacaaacagatcacttcacctactaccgccgccgctaccctccgtctcttcttccacgactgcttcgtcggcggctgcgacgcgtccatcctcgtctcctccactcctttcaacaaagctgaacgtgacgcagaaatcaacctatcactccccggcgatgggttcgatgtagtcgtacgcgccaaaacggcgcttgaacttgcttgccccggcgttgtctcttgctccgacattctcgccgtcgctgcccggaatctcgttgttcaaaccggaggcccgttttatccagttaatttgggccgtaaagattcttttacttctaaagcttcgttggttgaaggaaatctgccccgacccacaatgtcgatggatcaaatcatacaaattttcgggtcaagagggttttcggtaccggaaatggtagcgttatccggtgctcacacaattgggttttcccattgtaaagagttcagctcaaatctttacaattacaacaaaacttcccaatatgatccttcttacaatcccagatttgctcaagctttgagaaatgcttgtaataatttccagaaagatccaacattgtccgttttcaacgacatcatgactccgaataagtttgacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="33386" stop="34781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33682" g_stop="34481" g_length="800"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="800" r_length="800" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E704534" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33682" e_stop="34481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTCTCAAACACTGAGCTGAAAAACAGAGCAAATGGGTTTAACTCTTCTGCTTTTTCTTTGCTTCTCTGTTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCTTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCTACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATCCTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTACTTCTAAAGCTTCGTTGGTTGAAGGAAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATACAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCGTTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCTTCTTACAATCCCAGATTTGCTCAAGCTTTGAGAAATGCTTGTAATAATTTCCAGAAAGATCCAACATTGTCCGTTTTCAACGACATCATGACTCCGAATAAGTTTGACAA</genome_strand>
        <mrna_strand>GAGGCTCAAACACTGAGCTGAAAAACAGAGCAAATGGGTTTAACTCTTCTGCTTTTTCTTTGCTTCTCTGTTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCTTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCTACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATCCTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTACTTCTAAAGCTTCGTTGGTTGAAGGAAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATACAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCGTTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCTTCTTACAATCCCAGATTTGCTCAAGCTTTGAGAAATGCTTGTAATAATTTCCAGAAAGATCCAACATTGTCCGTTTTCAACGACATCATGACTCCGAATAAGTTTGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E591656" ref_strand="+" ref_description="SGN-E591656 [45373]">
      <seq>ctgaaaaatagcttagcaaaacacagagcaaatgggtttaactcttctgctttttcttttcttctctgtcttcttaactccttctttatcacagcgacattcgccgctaaatactgcttattaccggagatcatgtccaagatttgaacaaattatgcaagaaaccactacaaacaaacagatcacttcacctactaccgccgccgccaccctccgcctcttcttccacgactgcttcgtcggcggctgcgacgcctctgtcctcgtctcctccactcctttcaacaaagctgaacgtgacgcagaaatcaacctttcactccccggcgatgggttcgatgtagtcgtacgcgccaaaacggcgcttgaacttgcttgccccggagttgtctcttgctccgacattctcgccgtcgctgcccggaatctcgttgttcaaaccggaggcccgttttatccagttaatttgggccgtaaagattcttttatttcaaaagcttcgttggttgaaggaaatctgccccgacccacaatgtcgatggatcaaatcattaacattttcgggtcaagagggttttcggtacaggaaatggtagcattatccggtgctcacacaattgggttttcacattgtacagagttcagctcaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="33386" stop="34636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33683" g_stop="34336" g_length="654"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="653" r_length="653" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E591656" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E591656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33683" e_stop="34336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCAAACACTGAGCTGAAAAACAGAGCAAATGGGTTTAACTCTTCTGCTTTTTCTTTGCTTCTCTGTTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCTTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCTACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATCCTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTACTTCTAAAGCTTCGTTGGTTGAAGGAAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATACAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCGTTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATC</genome_strand>
        <mrna_strand>CTGAAAAATAGCTTAGC-AAAACACAGAGCAAATGGGTTTAACTCTTCTGCTTTTTCTTTTCTTCTCTGTCTTCTTAACTCCTTCTTTATCACAGCGACATTCGCCGCTAAATACTGCTTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCTACTACCGCCGCCGCCACCCTCCGCCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCCTCTGTCCTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTTTCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGAGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTATTTCAAAAGCTTCGTTGGTTGAAGGAAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATTAACATTTTCGGGTCAAGAGGGTTTTCGGTACAGGAAATGGTAGCATTATCCGGTGCTCACACAATTGGGTTTTCACATTGTACAGAGTTCAGCTCAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E249582" ref_strand="+" ref_description="SGN-E249582 [cLEF-56-P2]">
      <seq>aaaacagagcaaatgggtttaactcttctgctttttctttgcttctctggtatcttaactccttctttatcacagcaccattcgccgctaaatactgcttattaccggagatcatgtccaagatttgaacaaattatgcaagaaaccactacaaacaaacagatcacttcacctactaccgccgccgctaccctccgtctcttcttccacgactgcttcgtcggcggctgcgacgcgtccatcctcgtctcctccactcctttcaacaaagctgaacgtgacgcagaaatcaacctatcactccccggcgatgggttcgatgtagtcgtacgcgccaaaacggcgcttgaacttgcttgccccggcgttgtctcttgctccgacattctcgccgtcgctgcccggaatctcgttgttcaaaccggaggcccgttttatccagttaatttgggccgtaaagattcttttacttctaaagcttcgttggttgaaggaaatctgccccgacccacaatgtcgatggatcaaatcatacaaattttcgggtcaagagggttttcggtaccggaaatggtagcgttatccggtgctcacacaattgggttttcccattgtaaagagttcagctcaaatctttacaattacaacaaaacttcccaatatgatccttcttacaatccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="33403" stop="34683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33703" g_stop="34383" g_length="681"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="681" r_length="681" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E249582" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33703" e_stop="34383"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACAGAGCAAATGGGTTTAACTCTTCTGCTTTTTCTTTGCTTCTCTGTTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCTTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCTACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATCCTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTACTTCTAAAGCTTCGTTGGTTGAAGGAAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATACAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCGTTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCTTCTTACAATCCC</genome_strand>
        <mrna_strand>AAAACAGAGCAAATGGGTTTAACTCTTCTGCTTTTTCTTTGCTTCTCTGGTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCTTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCTACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATCCTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTACTTCTAAAGCTTCGTTGGTTGAAGGAAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATACAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCGTTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCTTCTTACAATCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E709140" ref_strand="+" ref_description="SGN-E709140 [FA42DC03]">
      <seq>cgattcagatcacttcacctactaccgccgccgctaccctccgtctcttcttccacgactgcttcgtcggcggctgcgacgcgtccatcctcgtctcctccactcctttcaacaaagctgaacgtgacgcagaaatcaacctatcactccccggcgatgggttcgatgtagtcgtacgcgccaaaacggcgcttgaacttgcttgccccggcgttgtctcttgctccgacattctcgccgtcgctgcccggaatctcgttgttcaaaccggaggcccgttttatccagttaatttgggccgtaaagattcttttacttctaaagcttcgttggttgaaggaaatctgccccgacccacaatgtcgatggatcaaatcatacaaattttcgggtcaagagggttttcggtaccggaaatggtagcgttatccggtgctcacacaattgggttttcccattgtaaagagttcagctcaaatctttacaattacaacaaaacttcccaatatgatccttcttacaatcccagatttgctcaagctttgagaaatgcttgtaataatttccagaaagatccaacattgtccgttttcaacgacctcatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="33562" stop="34763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33857" g_stop="34463" g_length="607"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="607" r_length="607" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E709140" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33857" e_stop="34463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACAGATCACTTCACCTACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATCCTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTACTTCTAAAGCTTCGTTGGTTGAAGGAAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATACAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCGTTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCTTCTTACAATCCCAGATTTGCTCAAGCTTTGAGAAATGCTTGTAATAATTTCCAGAAAGATCCAACATTGTCCGTTTTCAACGACATCATGAC</genome_strand>
        <mrna_strand>CGATTCAGATCACTTCACCTACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATCCTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTACTTCTAAAGCTTCGTTGGTTGAAGGAAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATACAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCGTTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCTTCTTACAATCCCAGATTTGCTCAAGCTTTGAGAAATGCTTGTAATAATTTCCAGAAAGATCCAACATTGTCCGTTTTCAACGACCTCATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E304777" ref_strand="+" ref_description="SGN-E304777 [cLEX-10-A9]">
      <seq>aacctatcactccccggcgatgggttcgatgttctaccccaaaacgggcttgaacttgcttgccccggcgttgctcttgctccgacattctcgccgcctgccggaatctcgtgtcaaaccggaggcccgttatccagttaatttgggccgtaaagattcttttacttctaaagcttcgttggttgaaggaaatctgccccgacccacaatgtcgatggatcaaatcatacaaattttcgggtcaagagggttttcggtaccggaaatggtagcgttatccggtgctcacacaattgggttttcccattgtaaagagttcagctcaaatctttacaattacaacaaaacttcccaatatgatccttcttacaatcccagatttgctcaagctttgagaaatgcttgtaataatttccagaaagatccaacattgtccgttttcaacgacatcatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="33694" stop="34763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33994" g_stop="34463" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="456" r_length="456" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E304777" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.031" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33994" e_stop="34463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTACTTCTAAAGCTTCGTTGGTTGAAGGAAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATACAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCGTTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCTTCTTACAATCCCAGATTTGCTCAAGCTTTGAGAAATGCTTGTAATAATTTCCAGAAAGATCCAACATTGTCCGTTTTCAACGACATCATGAC</genome_strand>
        <mrna_strand>AACCTATCACTCCCCGGCGATGGGTTCGATGT--TC-TAC-C-CCAAAACGG-GCTTGAACTTGCTTGCCCCGGCGTTG-CTCTTGCTCCGACATTCTCGCCG-C-CTG-CCGGAATCTCG-TG-TCAAACCGGAGGCCCG--TTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTACTTCTAAAGCTTCGTTGGTTGAAGGAAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATACAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCGTTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCTTCTTACAATCCCAGATTTGCTCAAGCTTTGAGAAATGCTTGTAATAATTTCCAGAAAGATCCAACATTGTCCGTTTTCAACGACATCATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E690734" ref_strand="+" ref_description="SGN-E690734 [LH_Ea04E12]">
      <seq>tgttgaagggaatctgccccgacccacaatgtcgatggatcaaatcattaaaattttcgggtcaagagggttttcggtaccggaaatggtagcattatccggtgctcacacaattgggttttcccattgtaaagagttcagctcaaatctttacaattacaacaaaacttcccaatatgatccttcttacaatcccagatttgctcaagctttgagaaatgcttgtaacaatttccagaaagatccaacattgtccgttttcaacgacatcatgactccgaataagtttgacaacatgtattaccagaacttacctaagggtttgggtctgttgtcttcggaccggggtctgttttcagatccgaggacaagagctcatgttgaagagtatattagagatcaaaatgcattctttaaggcgtttgcttcagcaatgcagaagctaagtgatcatggtgttaaaattgggagaagtggtgagatcagacacagatgtgatgctttcaacaattaaactacttgaggggtattgattatgttactgtacgttcgaattttttgttgaatttaatcacttacaagacgaaagtaaaacttataatatgtatacaatgttttttatttagattaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="33889" stop="119539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34188" g_stop="34828" g_length="641"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="641" r_length="641" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E690734" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E690734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34188" e_stop="34828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGAAGGAAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATACAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCGTTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCTTCTTACAATCCCAGATTTGCTCAAGCTTTGAGAAATGCTTGTAATAATTTCCAGAAAGATCCAACATTGTCCGTTTTCAACGACATCATGACTCCGAATAAGTTTGACAACATGTATTACCAGAACTTACCCAAGGGTTTGGGTCTGTTGTCTTCGGACCGGGGTCTGTTTTCAGATCCGAGGACAAGAGTTCATGTTGAAGAGTATATTAGAGATCAAAATGCATTCTTTAAGGCGTTTGCTTCAGCAATGCAGAAGCTAAGTGATCATGGTGTTAAAATTGGGAGAAGTGGTGAGATCAGACACAGATGTGATGCTTTCAACAATTAAACTATTTGAGGGGTATTGATTATGTTACTGTACGTTCGAATTTTTTGTTGAATTTAATCACTCACAAGACGAAAGTAAAACTTATAATATGTATACAATGTTTTTTACTATCATTTTTATTAAGATT</genome_strand>
        <mrna_strand>TGTTGAAGGGAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATTAAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCATTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCTTCTTACAATCCCAGATTTGCTCAAGCTTTGAGAAATGCTTGTAACAATTTCCAGAAAGATCCAACATTGTCCGTTTTCAACGACATCATGACTCCGAATAAGTTTGACAACATGTATTACCAGAACTTACCTAAGGGTTTGGGTCTGTTGTCTTCGGACCGGGGTCTGTTTTCAGATCCGAGGACAAGAGCTCATGTTGAAGAGTATATTAGAGATCAAAATGCATTCTTTAAGGCGTTTGCTTCAGCAATGCAGAAGCTAAGTGATCATGGTGTTAAAATTGGGAGAAGTGGTGAGATCAGACACAGATGTGATGCTTTCAACAATTAAACTACTTGAGGGGTATTGATTATGTTACTGTACGTTCGAATTTTTTGTTGAATTTAATCACTTACAAGACGAAAGTAAAACTTATAATATGTATACAATGTTTTTTATTTAGATTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E694574" ref_strand="+" ref_description="SGN-E694574 [LH_Ea04E12](-)">
      <seq>gttgaagggaatctgccccgacccacaatgtcgatggatcaaatcattaaaattttcgggtcaagagggttttcggtaccggaaatggtagcattatccggtgctcacacaattgggttttcccattgtaaagagttcagctcaaatctttacaattacaacaaaacttcccaatatgatccttcttacaatcccagatttgctcaagctttgagaaatgcttgtaacaatttccagaaagatccaacattgtccgttttcaacgacatcatgactccgaataagtttgacaacatgtattaccagaacttacctaagggtttgggtctgttgtcttcggaccggggtctgttttcagatccgaggacaagagctcatgttgaagagtatattagagatcaaaatgcattctttaaggcgtttgcttcagcaatgcagaagctaagtgatcatggtgttaaaattgggagaagtggtgagatcagacacagatgtgatgctttcaacaattaaactacttgaggggtattgattatgttactgtacgttcgaattttttgttgaatttaatcacttacaagacgaaagtaaaacataataatatgtatacaatgttttttattagattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="33889" stop="62400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34189" g_stop="34833" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="645" r_length="645" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E694574" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E694574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34189" e_stop="34833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGAAGGAAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATACAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCGTTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCTTCTTACAATCCCAGATTTGCTCAAGCTTTGAGAAATGCTTGTAATAATTTCCAGAAAGATCCAACATTGTCCGTTTTCAACGACATCATGACTCCGAATAAGTTTGACAACATGTATTACCAGAACTTACCCAAGGGTTTGGGTCTGTTGTCTTCGGACCGGGGTCTGTTTTCAGATCCGAGGACAAGAGTTCATGTTGAAGAGTATATTAGAGATCAAAATGCATTCTTTAAGGCGTTTGCTTCAGCAATGCAGAAGCTAAGTGATCATGGTGTTAAAATTGGGAGAAGTGGTGAGATCAGACACAGATGTGATGCTTTCAACAATTAAACTATTTGAGGGGTATTGATTATGTTACTGTACGTTCGAATTTTTTGTTGAATTTAATCACTCACAAGACGAAAGTAAAAC-TTATAATATGTATACAATGTTTTTTACTATCATTTTTATTAAGATTACAAG</genome_strand>
        <mrna_strand>GTTGAAGGGAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATTAAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCATTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCTTCTTACAATCCCAGATTTGCTCAAGCTTTGAGAAATGCTTGTAACAATTTCCAGAAAGATCCAACATTGTCCGTTTTCAACGACATCATGACTCCGAATAAGTTTGACAACATGTATTACCAGAACTTACCTAAGGGTTTGGGTCTGTTGTCTTCGGACCGGGGTCTGTTTTCAGATCCGAGGACAAGAGCTCATGTTGAAGAGTATATTAGAGATCAAAATGCATTCTTTAAGGCGTTTGCTTCAGCAATGCAGAAGCTAAGTGATCATGGTGTTAAAATTGGGAGAAGTGGTGAGATCAGACACAGATGTGATGCTTTCAACAATTAAACTACTTGAGGGGTATTGATTATGTTACTGTACGTTCGAATTTTTTGTTGAATTTAATCACTTACAAGACGAAAGTAAAACATAATAATATGTATACAATGTTTTTTATTA-GATTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E220883" ref_strand="+" ref_description="SGN-E220883 [cLEL-22-N13](-)">
      <seq>cccagatttgctcaagctttgagaaatgcttgtaataatttccagaaagatccaacattgtccgttttcaacgacatcatgactccgaataagtttgacaacatgtattaccagaacttacccaagggtttgggtctgttgtcttcggaccggggtctgttttcagatccgaggacaagagttcatgttgaagagtatattagagatcaaaatgcattctttaaggcgtttgcttcagcaatgcagaagctaagtgatcatggtgttaaaattgggagaagtggtgagatcagacacagatgtgatgctttcaacaattaaactatttgaggggtattgattatgttactgtacgttcgaattttttgttgaatttaatcactcacaagacgaaagtaaaacttataataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="34081" stop="62400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34381" g_stop="34807" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E220883" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34381" e_stop="34807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAGATTTGCTCAAGCTTTGAGAAATGCTTGTAATAATTTCCAGAAAGATCCAACATTGTCCGTTTTCAACGACATCATGACTCCGAATAAGTTTGACAACATGTATTACCAGAACTTACCCAAGGGTTTGGGTCTGTTGTCTTCGGACCGGGGTCTGTTTTCAGATCCGAGGACAAGAGTTCATGTTGAAGAGTATATTAGAGATCAAAATGCATTCTTTAAGGCGTTTGCTTCAGCAATGCAGAAGCTAAGTGATCATGGTGTTAAAATTGGGAGAAGTGGTGAGATCAGACACAGATGTGATGCTTTCAACAATTAAACTATTTGAGGGGTATTGATTATGTTACTGTACGTTCGAATTTTTTGTTGAATTTAATCACTCACAAGACGAAAGTAAAACTTATAATATGTATACAATGTTTTTT</genome_strand>
        <mrna_strand>CCCAGATTTGCTCAAGCTTTGAGAAATGCTTGTAATAATTTCCAGAAAGATCCAACATTGTCCGTTTTCAACGACATCATGACTCCGAATAAGTTTGACAACATGTATTACCAGAACTTACCCAAGGGTTTGGGTCTGTTGTCTTCGGACCGGGGTCTGTTTTCAGATCCGAGGACAAGAGTTCATGTTGAAGAGTATATTAGAGATCAAAATGCATTCTTTAAGGCGTTTGCTTCAGCAATGCAGAAGCTAAGTGATCATGGTGTTAAAATTGGGAGAAGTGGTGAGATCAGACACAGATGTGATGCTTTCAACAATTAAACTATTTGAGGGGTATTGATTATGTTACTGTACGTTCGAATTTTTTGTTGAATTTAATCACTCACAAGACGAAAGTAAAACTTATAATAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E349598" ref_strand="+" ref_description="SGN-E349598 [cTOS-1-B24]">
      <seq>agaagctaagtgatcatggtgttaaaattgggagaagtggtgagatcagacacagatgtgatgctttcaacaattaaactatttgaggggtattgattatgttactgtacgttcgaattttttgttgaatttaatcactcacaagacgaaagtaaaacttataatatgtatacaatgttttttactatcatttttattaagattacaaggctctgcttcagttctgcttttagaacaactactactactactacttgtgattagtgtgtgttgagatgcaggtaagaggctgtttgttcgtcgaatttgattcaataagaaatgaaaccgtaaataaagtttgctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="34325" stop="35270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34625" g_stop="34962" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="346" polyA_stop="356"/>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E349598" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34625" e_stop="34962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGCTAAGTGATCATGGTGTTAAAATTGGGAGAAGTGGTGAGATCAGACACAGATGTGATGCTTTCAACAATTAAACTATTTGAGGGGTATTGATTATGTTACTGTACGTTCGAATTTTTTGTTGAATTTAATCACTCACAAGACGAAAGTAAAACTTATAATATGTATACAATGTTTTTTACTATCATTTTTATTAAGATTACAAGGCTCTGCTTCAGTTCTGCTTTTAGAACAACTACTACTACTACTACTTGTGATTAGTGTGTGTTGAGATGCAGGTAAGAGGCTGTTTGTTCGTCGAATTTGATTCAATAAGAAATGAAACCGTAAATAAA</genome_strand>
        <mrna_strand>AGAAGCTAAGTGATCATGGTGTTAAAATTGGGAGAAGTGGTGAGATCAGACACAGATGTGATGCTTTCAACAATTAAACTATTTGAGGGGTATTGATTATGTTACTGTACGTTCGAATTTTTTGTTGAATTTAATCACTCACAAGACGAAAGTAAAACTTATAATATGTATACAATGTTTTTTACTATCATTTTTATTAAGATTACAAGGCTCTGCTTCAGTTCTGCTTTTAGAACAACTACTACTACTACTACTTGTGATTAGTGTGTGTTGAGATGCAGGTAAGAGGCTGTTTGTTCGTCGAATTTGATTCAATAAGAAATGAAACCGTAAATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E351915" ref_strand="+" ref_description="SGN-E351915 [cTOS-8-N21]">
      <seq>agaagctaagtgatcatggtgttaaaattgggagaagtggtgagatcagacacagatgtgatgctttcaacaattaaactatttgaggggtattgattatgttactgtacgttcgaattttttgttgaatttaatcactcacaagacgaaagtaaaacttataatatgtatacaatgttttttactatcatttttattaagattacaaggctctgcttcagttctgcttttagaacaactactactactactacttgtgattagtgtgtgttgagatgcaggtaagaggctgtttgttcgtcgaatttgattcaataagaaatgaaaccgtaaataaagtttgctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="34325" stop="35270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34625" g_stop="34962" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="346" polyA_stop="356"/>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E351915" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34625" e_stop="34962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGCTAAGTGATCATGGTGTTAAAATTGGGAGAAGTGGTGAGATCAGACACAGATGTGATGCTTTCAACAATTAAACTATTTGAGGGGTATTGATTATGTTACTGTACGTTCGAATTTTTTGTTGAATTTAATCACTCACAAGACGAAAGTAAAACTTATAATATGTATACAATGTTTTTTACTATCATTTTTATTAAGATTACAAGGCTCTGCTTCAGTTCTGCTTTTAGAACAACTACTACTACTACTACTTGTGATTAGTGTGTGTTGAGATGCAGGTAAGAGGCTGTTTGTTCGTCGAATTTGATTCAATAAGAAATGAAACCGTAAATAAA</genome_strand>
        <mrna_strand>AGAAGCTAAGTGATCATGGTGTTAAAATTGGGAGAAGTGGTGAGATCAGACACAGATGTGATGCTTTCAACAATTAAACTATTTGAGGGGTATTGATTATGTTACTGTACGTTCGAATTTTTTGTTGAATTTAATCACTCACAAGACGAAAGTAAAACTTATAATATGTATACAATGTTTTTTACTATCATTTTTATTAAGATTACAAGGCTCTGCTTCAGTTCTGCTTTTAGAACAACTACTACTACTACTACTTGTGATTAGTGTGTGTTGAGATGCAGGTAAGAGGCTGTTTGTTCGTCGAATTTGATTCAATAAGAAATGAAACCGTAAATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E241773" ref_strand="+" ref_description="SGN-E241773 [cLEE-10-G7]">
      <seq>agattgtgtcaatggtacactctcttcattcttgctttcactgtttgagcatcaagatgctcaaaaatgaaaaacaactctggagttcattgcatttgctctgcagcaatgtttattgcaatgcagaccttaaagaaacatgagaataacaattctctaacaacttccgcagttgcagcaatcaatcaactccagcataaataccaaattactagacagcggcttgtggaagccacgaacagtgcatagaataagcctcaggcacacaagaaagtgaaaatcgcattgcttgaagagtattaggagacaatgagttcatgttaaagacagcctcttttctccaaaaactaaaacacactgttcagaatctttctttacacctccaacattatttaccatgtcaactgtcacatgacctcagaagacacgacgagcaaaaccaaaaccaaaatcatgctatccgaagctatgcaaagagaaaaccgtgcctaattacaagccatttctcagaaaaaggaatgaaatagcatacagtgaagaaacagaaacaaacaagagctatgaagaacttatccgtgcttgactgatatcatcatccgaattaagcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="35615" stop="36824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35915" g_stop="36524" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="610" r_length="610" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E241773" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35915" e_stop="36524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTGTGTCAATGGTACACTCTCTTCATTCTTGCTTTCACTGTTTGAGCATCAAGATGCTCAAAAATGAAAAACAACTCTGGAGTTCATTGCATTTGCTCTGCAGCAATGTTTATTGCAATGCAGACCTTAAAGAAACATGAGAATAACAATTCTCTAACAACTTCCGCAGTTGCAGCAATCAATCAACTCCAGCATAAATACCAAATTACTAGACAGCGGCTTGTGGAAGCCACGAACAGTGCATAGAATAAGCCTCAGGCACACAAGAAAGTGAAAATAGCATTGCTTGAAGAGTATTAGGAGACAATGAGTTCATGTTAAAGACAGCCTCTTTTCTCCAAAAACTAAAACACACTGTTCAGAATCTTTCTTTACACCTCCAACATTATTTACCATGTCAACTGTCACATGACCTCAGAAGACACGACGAGCAAAACCAAAACCAAAATCATGCTATCCGAAGCTATGCAAAGAGAAAACCGTGCCTAATTACAAGCCATTTCTCAGAAAAAGGAATGAAATAGCATACAGTGAAGAAACAGAAACAAACAAGAGCTATGAAGAACTTATCCGTGCTTGACTGATATCATCATCCGAATTAAGCAAC</genome_strand>
        <mrna_strand>AGATTGTGTCAATGGTACACTCTCTTCATTCTTGCTTTCACTGTTTGAGCATCAAGATGCTCAAAAATGAAAAACAACTCTGGAGTTCATTGCATTTGCTCTGCAGCAATGTTTATTGCAATGCAGACCTTAAAGAAACATGAGAATAACAATTCTCTAACAACTTCCGCAGTTGCAGCAATCAATCAACTCCAGCATAAATACCAAATTACTAGACAGCGGCTTGTGGAAGCCACGAACAGTGCATAGAATAAGCCTCAGGCACACAAGAAAGTGAAAATCGCATTGCTTGAAGAGTATTAGGAGACAATGAGTTCATGTTAAAGACAGCCTCTTTTCTCCAAAAACTAAAACACACTGTTCAGAATCTTTCTTTACACCTCCAACATTATTTACCATGTCAACTGTCACATGACCTCAGAAGACACGACGAGCAAAACCAAAACCAAAATCATGCTATCCGAAGCTATGCAAAGAGAAAACCGTGCCTAATTACAAGCCATTTCTCAGAAAAAGGAATGAAATAGCATACAGTGAAGAAACAGAAACAAACAAGAGCTATGAAGAACTTATCCGTGCTTGACTGATATCATCATCCGAATTAAGCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E552625" ref_strand="+" ref_description="SGN-E552625 [cTSB-4-I15]">
      <seq>gctctgcctccacttcttcatgcccttcgatctgaatcggaacgaactaggcatgattcggctctggctctatatcacctcactttagttcagagtaacagggctaaattggtgaaactcggggcggttcaggcattactaggcatggttaaaacgggtcatatgatgggtcggattctgttgatactttgtaacctggctgcgagctctgaagggagagcagcaatgcttgatgggggtgcagtggagtgttttgtatgtatgttgagaaagggagagtttgaatcggagtcgactcgtgagaattgtcttgctgcattatatggacttagtcatggtggccttaggtttaaagggttggcaaaagaggctgctgcggaagagctgttgatacaagttgaggaaatgggaagtgaaagggccaaggataaagttagaaagatattggaggttttgaggcagaaggatgaagaggaggaagttgattgggagaagttgcttaattcggatgatgatatcagtcaagcacggataagttcttcatagctcttgtttgtttctgtttcttcactgtatgctatttcattcctttttctgagaaatggcttgtaattaggcacggttttctctttgcatagcttcggatagcatgattttggttttggttttgctcgtcgtgtcttctgaggtcatgtgacagttgacatggtaaataatgttggaggtgtaaagaaagattctgaacagtgtgttttagtttttggagaaaagaggctgtctttaacatgaaaaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="37318" stop="35929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37018" g_stop="36222" g_length="797"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="797" r_length="797" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E552625" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37018" e_stop="36222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTGCCTCCACTTCTTCATGCCCTTCGATCTGAATCGGAACGAACTAGGCATGATTCGGCTCTGGCTCTATATCACCTCACTTTAGTTCAGAGTAACAGGGCTAAATTGGTGAAACTCGGGGCGGTTCAGGCATTACTAGGCATGGTTAAAACGGGTCATATGATGGGTCGGATTCTGTTGATACTTTGTAACCTGGCTGCGAGCTCTGAAGGGAGAGCAGCAATGCTTGATGGGGGTGCAGTGGAGTGTTTTGTATGTATGTTGAGAAAGGGAGAGTTTGAATCGGAGTCGACTCGTGAGAATTGTCTTGCTGCATTATATGGACTTAGTCATGGTGGCCTTAGGTTTAAAGGGTTGGCAAAAGAGGCTGCTGCGGAGGAGCTGTTGATACAAGTTGAGGAAATGGGAAGTGAAAGGGCCAAGGATAAAGTTAGAAAGATATTGGAGGTTTTGAGGCAGAAGGATGAAGAGGAGGAAGTTGATTGGGAGAAGTTGCTTAATTCGGATGATGATATCAGTCAAGCACGGATAAGTTCTTCATAGCTCTTGTTTGTTTCTGTTTCTTCACTGTATGCTATTTCATTCCTTTTTCTGAGAAATGGCTTGTAATTAGGCACGGTTTTCTCTTTGCATAGCTTCGGATAGCATGATTTTGGTTTTGGTTTTGCTCGTCGTGTCTTCTGAGGTCATGTGACAGTTGACATGGTAAATAATGTTGGAGGTGTAAAGAAAGATTCTGAACAGTGTGTTTTAGTTTTTGGAGAAAAGAGGCTGTCTTTAACATGAACTCATTG</genome_strand>
        <mrna_strand>GCTCTGCCTCCACTTCTTCATGCCCTTCGATCTGAATCGGAACGAACTAGGCATGATTCGGCTCTGGCTCTATATCACCTCACTTTAGTTCAGAGTAACAGGGCTAAATTGGTGAAACTCGGGGCGGTTCAGGCATTACTAGGCATGGTTAAAACGGGTCATATGATGGGTCGGATTCTGTTGATACTTTGTAACCTGGCTGCGAGCTCTGAAGGGAGAGCAGCAATGCTTGATGGGGGTGCAGTGGAGTGTTTTGTATGTATGTTGAGAAAGGGAGAGTTTGAATCGGAGTCGACTCGTGAGAATTGTCTTGCTGCATTATATGGACTTAGTCATGGTGGCCTTAGGTTTAAAGGGTTGGCAAAAGAGGCTGCTGCGGAAGAGCTGTTGATACAAGTTGAGGAAATGGGAAGTGAAAGGGCCAAGGATAAAGTTAGAAAGATATTGGAGGTTTTGAGGCAGAAGGATGAAGAGGAGGAAGTTGATTGGGAGAAGTTGCTTAATTCGGATGATGATATCAGTCAAGCACGGATAAGTTCTTCATAGCTCTTGTTTGTTTCTGTTTCTTCACTGTATGCTATTTCATTCCTTTTTCTGAGAAATGGCTTGTAATTAGGCACGGTTTTCTCTTTGCATAGCTTCGGATAGCATGATTTTGGTTTTGGTTTTGCTCGTCGTGTCTTCTGAGGTCATGTGACAGTTGACATGGTAAATAATGTTGGAGGTGTAAAGAAAGATTCTGAACAGTGTGTTTTAGTTTTTGGAGAAAAGAGGCTGTCTTTAACATGAAAAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E372038" ref_strand="+" ref_description="SGN-E372038 [TUS-30-D8](-)">
      <seq>cttttcagtttagcgttagatgatcagaacaaaactgcaattggggtattaggagctctgcctccacttcttcatgcccttcgatctgaatcggaacgaactaggcatgattcggctctggctctatatcacctcactttagttcagagtaacagggctaaattggtgaaactcggggcggttcaggcattactaggcatggttaaaacgggtcatatgatgggtcggattctgttgatactttgtaacctggctgcgagctctgaagggagagcagcaatgcttgatgggggtgcagtggagtgttttgtatgtatgttgagaaagggagagtttgaatcggagtcgactcgtgagaattgtcttgctgcattatatggacttagtcatggtggccttaggtttaaagggttggcaaaagaggctgctgcggaggagctgttgatacaagttgaggaaatgggaagtgaaagggccaaggataaagttagaaagatattggaggttttgaggcagaaggatgaagaggaggaagttgattgggagaagttgcttaattcggatgatgatatcagtcaagcacggataagttcttcatagctcttgtttgtttctgtttcttcactgtatgctatttcattcctttttctgagaaatggcttgtaattaggcacggttttctctttgcatagcttcggatagcatgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="37372" stop="36066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37072" g_stop="36367" g_length="706"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="706" r_length="706" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="707" polyA_stop="716"/>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E372038" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37072" e_stop="36367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCAGTTTAGCGTTAGATGATCAGAACAAAACTGCAATTGGGGTATTAGGAGCTCTGCCTCCACTTCTTCATGCCCTTCGATCTGAATCGGAACGAACTAGGCATGATTCGGCTCTGGCTCTATATCACCTCACTTTAGTTCAGAGTAACAGGGCTAAATTGGTGAAACTCGGGGCGGTTCAGGCATTACTAGGCATGGTTAAAACGGGTCATATGATGGGTCGGATTCTGTTGATACTTTGTAACCTGGCTGCGAGCTCTGAAGGGAGAGCAGCAATGCTTGATGGGGGTGCAGTGGAGTGTTTTGTATGTATGTTGAGAAAGGGAGAGTTTGAATCGGAGTCGACTCGTGAGAATTGTCTTGCTGCATTATATGGACTTAGTCATGGTGGCCTTAGGTTTAAAGGGTTGGCAAAAGAGGCTGCTGCGGAGGAGCTGTTGATACAAGTTGAGGAAATGGGAAGTGAAAGGGCCAAGGATAAAGTTAGAAAGATATTGGAGGTTTTGAGGCAGAAGGATGAAGAGGAGGAAGTTGATTGGGAGAAGTTGCTTAATTCGGATGATGATATCAGTCAAGCACGGATAAGTTCTTCATAGCTCTTGTTTGTTTCTGTTTCTTCACTGTATGCTATTTCATTCCTTTTTCTGAGAAATGGCTTGTAATTAGGCACGGTTTTCTCTTTGCATAGCTTCGGATAGCATG</genome_strand>
        <mrna_strand>CTTTTCAGTTTAGCGTTAGATGATCAGAACAAAACTGCAATTGGGGTATTAGGAGCTCTGCCTCCACTTCTTCATGCCCTTCGATCTGAATCGGAACGAACTAGGCATGATTCGGCTCTGGCTCTATATCACCTCACTTTAGTTCAGAGTAACAGGGCTAAATTGGTGAAACTCGGGGCGGTTCAGGCATTACTAGGCATGGTTAAAACGGGTCATATGATGGGTCGGATTCTGTTGATACTTTGTAACCTGGCTGCGAGCTCTGAAGGGAGAGCAGCAATGCTTGATGGGGGTGCAGTGGAGTGTTTTGTATGTATGTTGAGAAAGGGAGAGTTTGAATCGGAGTCGACTCGTGAGAATTGTCTTGCTGCATTATATGGACTTAGTCATGGTGGCCTTAGGTTTAAAGGGTTGGCAAAAGAGGCTGCTGCGGAGGAGCTGTTGATACAAGTTGAGGAAATGGGAAGTGAAAGGGCCAAGGATAAAGTTAGAAAGATATTGGAGGTTTTGAGGCAGAAGGATGAAGAGGAGGAAGTTGATTGGGAGAAGTTGCTTAATTCGGATGATGATATCAGTCAAGCACGGATAAGTTCTTCATAGCTCTTGTTTGTTTCTGTTTCTTCACTGTATGCTATTTCATTCCTTTTTCTGAGAAATGGCTTGTAATTAGGCACGGTTTTCTCTTTGCATAGCTTCGGATAGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E372039" ref_strand="+" ref_description="SGN-E372039 [TUS-30-D8]">
      <seq>ctcatggctgaccctgtaatcgtttcttcaggccatacttttgagcgtcattgtgttcatgcctgcaaatcactttcttttacccctgttcttcctgatggctctgttcctgatttctctactgtgatccctaacttagctctcaagtctacaatcctcaatttttgccgttcttcttttcttgacccaccaaaacccatcaattttctcacagctgaaaatctcgttttcacattgaaggccacccgaaaaccccaagatgctacaagatttaatggcgtccgggttatgcagacggaaactgaactgaaccgggtaccgagtcacatatcaatgagttcagaggaatctgtgactcctagaagtggacccacttattactcttcgtcgtcagcctctgactttgaaaccctaaacccaaattcctttgaagaagatgaactacttgtgaaattgaagagttcccaaatatctgaacaagaagaagctgtcatctcgtttcgaaaattgacccgaacccgtgaagaaacccggttccagttatgcactccgcgtatactttcagctctacgtgtactcatcacttcaaggtatgtttctgtacaagtaaattcagtagcggcattggtaaatttgtcgttagagaatcgaaacaaggtgaaaatttttacggtctggaattgttccgtcctttattgacgtgttgaaaagtggattccaagaatcacaggaacatgttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="38119" stop="36779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37819" g_stop="37079" g_length="741"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="742" r_length="742" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E372039" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37819" e_stop="37079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATGGCTGACCCTGTAATCGTTTCTTCAGGCCATACTTTTGAGCGTCATTGTGTTCATGCCTGCAAATCACTTTCTTTTACCCCTGTTCTTCCTGATGGCTCTGTTCCTGATTTCTCTACTGTGATCCCTAACTTAGCTCTCAAGTCTACAATCCTCAATTTTTGCCGTTCTTCTTTTCTTGACCCACCAAAACCCATCAATTTTCTCACAGCTGAAAATCTCGTTTTCACATTGAAGGCCACCCGAAAACCCCAAGATGCTACAAGATTTAATGGCGTCCGGGTTATGCAGACGGAAACTGAACTGAACCGGGTACCGAGTCACATATCAATGAGTTCAGAGGAATCTGTGACTCCTAGAAGTGGACCCACTTATTACTCTTCGTCGTCAGCCTCTGACTTTGAAACCCTAAACCCAAATTCCTTTGAAGAAGATGAACTACTTGTGAAATTGAAGAGTTCCCAAATATCTGAACAAGAAGAAGCTGTCATCTCGTTTCGAAAATTGACCCGAACCCGTGAAGAAACCCGGTTCCAGTTATGCACTCCGCGTATACTTTCAGCTCTACGTGTACTCATCACTTCAAGGTATGTTTCTGTACAAGTAAATTCAGTAGCGGCATTGGTAAATTTGTCGTTAGAGAATCGAAACAAGGTGAAAA-TTTTACGGTCTGGAATTGTTCCGTCTTTGATTGACGTGTTGAAAAGTGGATTCCAAGAATCACAGGAACATGTTGCT</genome_strand>
        <mrna_strand>CTCATGGCTGACCCTGTAATCGTTTCTTCAGGCCATACTTTTGAGCGTCATTGTGTTCATGCCTGCAAATCACTTTCTTTTACCCCTGTTCTTCCTGATGGCTCTGTTCCTGATTTCTCTACTGTGATCCCTAACTTAGCTCTCAAGTCTACAATCCTCAATTTTTGCCGTTCTTCTTTTCTTGACCCACCAAAACCCATCAATTTTCTCACAGCTGAAAATCTCGTTTTCACATTGAAGGCCACCCGAAAACCCCAAGATGCTACAAGATTTAATGGCGTCCGGGTTATGCAGACGGAAACTGAACTGAACCGGGTACCGAGTCACATATCAATGAGTTCAGAGGAATCTGTGACTCCTAGAAGTGGACCCACTTATTACTCTTCGTCGTCAGCCTCTGACTTTGAAACCCTAAACCCAAATTCCTTTGAAGAAGATGAACTACTTGTGAAATTGAAGAGTTCCCAAATATCTGAACAAGAAGAAGCTGTCATCTCGTTTCGAAAATTGACCCGAACCCGTGAAGAAACCCGGTTCCAGTTATGCACTCCGCGTATACTTTCAGCTCTACGTGTACTCATCACTTCAAGGTATGTTTCTGTACAAGTAAATTCAGTAGCGGCATTGGTAAATTTGTCGTTAGAGAATCGAAACAAGGTGAAAATTTTTACGGTCTGGAATTGTTCCGTCCTTTATTGACGTGTTGAAAAGTGGATTCCAAGAATCACAGGAACATGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E282921" ref_strand="+" ref_description="SGN-E282921 [cLER-17-A11]">
      <seq>ctcatggctgaccctgtaatcgtttcttcaggccatactttggagcgtcattgtgttcatgcctgcaaatcactttcttttacccctgttcttcctgatggctctgttcctgatttctctactgtgatccctaacttagctctcaagtctacaatcctcaatttttgccgttcttcttttcttgacccaccaaaacccatcaattttctcacagctgaaaatctcgttttcacattgaaggccacccgaaaaccccaagatgctacaagatttaatggcgtccgggttatgcagacggaaactgaactgaaccgggtaccgagtcacatatcaatgagttcagaggaatctgtgactcctagaagtggacccacttattactcttcgtcgtcagcctctgactttgaaaccctaaacccaaattcctttgaagaagatgaactacttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="38119" stop="37070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37819" g_stop="37370" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E282921" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37819" e_stop="37370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATGGCTGACCCTGTAATCGTTTCTTCAGGCCATACTTTTGAGCGTCATTGTGTTCATGCCTGCAAATCACTTTCTTTTACCCCTGTTCTTCCTGATGGCTCTGTTCCTGATTTCTCTACTGTGATCCCTAACTTAGCTCTCAAGTCTACAATCCTCAATTTTTGCCGTTCTTCTTTTCTTGACCCACCAAAACCCATCAATTTTCTCACAGCTGAAAATCTCGTTTTCACATTGAAGGCCACCCGAAAACCCCAAGATGCTACAAGATTTAATGGCGTCCGGGTTATGCAGACGGAAACTGAACTGAACCGGGTACCGAGTCACATATCAATGAGTTCAGAGGAATCTGTGACTCCTAGAAGTGGACCCACTTATTACTCTTCGTCGTCAGCCTCTGACTTTGAAACCCTAAACCCAAATTCCTTTGAAGAAGATGAACTACTTGTG</genome_strand>
        <mrna_strand>CTCATGGCTGACCCTGTAATCGTTTCTTCAGGCCATACTTTGGAGCGTCATTGTGTTCATGCCTGCAAATCACTTTCTTTTACCCCTGTTCTTCCTGATGGCTCTGTTCCTGATTTCTCTACTGTGATCCCTAACTTAGCTCTCAAGTCTACAATCCTCAATTTTTGCCGTTCTTCTTTTCTTGACCCACCAAAACCCATCAATTTTCTCACAGCTGAAAATCTCGTTTTCACATTGAAGGCCACCCGAAAACCCCAAGATGCTACAAGATTTAATGGCGTCCGGGTTATGCAGACGGAAACTGAACTGAACCGGGTACCGAGTCACATATCAATGAGTTCAGAGGAATCTGTGACTCCTAGAAGTGGACCCACTTATTACTCTTCGTCGTCAGCCTCTGACTTTGAAACCCTAAACCCAAATTCCTTTGAAGAAGATGAACTACTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E313783" ref_strand="+" ref_description="SGN-E313783 [cTOA-17-F20]">
      <seq>gaagatgtacacttttgctcatctcctcaacaggctcaaagttgaatttttgaaaccttttgttttcattcatatttgaacctcaaagattgaatcttgaaacttctttttttttttcttcattgaaatgggtactagcaagcaaagatggagaatttcatttcacaagtctccatcaaaacaacctcctattcctatagaatttgtctgtcctatttctggttctctcatggctgaccctgtaatcgtttcttcaggccatacttttgagcgtcattgtgttcatgcctgcaaatcactttcttttacccctgttcttcctgatggctctgttcctgatttctctactgtgatccctaacttagctctcaagtctacaatcctcaatttttgccgttcttcttttcttgacccaccaaaacccatcaattttctcacagctgaaaatctcgttttcacattgaaggccacccgaaaaccccaagatgctacaagatttaatggcgtccgggttatgcagacggaaactgaactgaaccgggtaccgagtcacatatcaatgagttcagaggaatctgtgactcctagaagtggacccacttattactctttgtcgtcagcctctgactttgaaaccctaaacccaaattcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="38345" stop="37092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38045" g_stop="37392" g_length="654"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="654" r_length="654" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E313783" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38045" e_stop="37392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATGTACACTTTTGCTCATCTCCTCAACAGGCTCAAAGTTGAATTTTTGAAACCTTTTGTTTTCATTCATATTTGAACCTCAAAGATTGAATCTTGAAACTTCTTTTTTTTTTTCTTCATTGAAATGGGTACTAGCAAGCAAAGATGGAGAATTTCATTTCACAAGTCTCCATCAAAACAACCTCCTATTCCTATAGAATTTGTCTGTCCTATTTCTGGTTCTCTCATGGCTGACCCTGTAATCGTTTCTTCAGGCCATACTTTTGAGCGTCATTGTGTTCATGCCTGCAAATCACTTTCTTTTACCCCTGTTCTTCCTGATGGCTCTGTTCCTGATTTCTCTACTGTGATCCCTAACTTAGCTCTCAAGTCTACAATCCTCAATTTTTGCCGTTCTTCTTTTCTTGACCCACCAAAACCCATCAATTTTCTCACAGCTGAAAATCTCGTTTTCACATTGAAGGCCACCCGAAAACCCCAAGATGCTACAAGATTTAATGGCGTCCGGGTTATGCAGACGGAAACTGAACTGAACCGGGTACCGAGTCACATATCAATGAGTTCAGAGGAATCTGTGACTCCTAGAAGTGGACCCACTTATTACTCTTCGTCGTCAGCCTCTGACTTTGAAACCCTAAACCCAAATTCCTT</genome_strand>
        <mrna_strand>GAAGATGTACACTTTTGCTCATCTCCTCAACAGGCTCAAAGTTGAATTTTTGAAACCTTTTGTTTTCATTCATATTTGAACCTCAAAGATTGAATCTTGAAACTTCTTTTTTTTTTTCTTCATTGAAATGGGTACTAGCAAGCAAAGATGGAGAATTTCATTTCACAAGTCTCCATCAAAACAACCTCCTATTCCTATAGAATTTGTCTGTCCTATTTCTGGTTCTCTCATGGCTGACCCTGTAATCGTTTCTTCAGGCCATACTTTTGAGCGTCATTGTGTTCATGCCTGCAAATCACTTTCTTTTACCCCTGTTCTTCCTGATGGCTCTGTTCCTGATTTCTCTACTGTGATCCCTAACTTAGCTCTCAAGTCTACAATCCTCAATTTTTGCCGTTCTTCTTTTCTTGACCCACCAAAACCCATCAATTTTCTCACAGCTGAAAATCTCGTTTTCACATTGAAGGCCACCCGAAAACCCCAAGATGCTACAAGATTTAATGGCGTCCGGGTTATGCAGACGGAAACTGAACTGAACCGGGTACCGAGTCACATATCAATGAGTTCAGAGGAATCTGTGACTCCTAGAAGTGGACCCACTTATTACTCTTTGTCGTCAGCCTCTGACTTTGAAACCCTAAACCCAAATTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E376924" ref_strand="+" ref_description="SGN-E376924 [TUS-20-A17]">
      <seq>aagaacaaaaatacacgaaagaagaaaatggaaggaggaacagaagcctatccagatttaggtagacattgccaactatctgattgccatcaactcgattttctcccttttacctgccatgcctgtttaaaggtattttgtgtggaacatagatcatgcaagtctcatgaatgcccaaaatctgactttaacagccgaatcgttttggtttgcgaaatttgttctatgtccatggaaactaccggctgtaaagttgaagaccacaaagcaatattacaaaaacacgaggaatctggggattgtgaccctaagaagaagaagaagaaacctacctgtcctgtcaaaagatgcaaggggattttgaccttctcaaacactagcacttgcaagatatgccggattcaagtttgcctcagacacaggttccctgctgatcacgcctgtaaccccacttcttcatcatcacagctgttgctaaaggaacccaataacaagtttttgactgctttgcttgcaaggaatgggaaagattgtgggaataaaagtcgtgcctcatctccaagccctgcgaacccttctgtgaaagcttgttgatcgtttcacagcacattactattcatttgtcttttgtaattacattattttattgaaaacaatgttgttctatttttcaatttctccctcccttctatgataaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="42975" stop="44380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43275" g_stop="43406" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43407" i_stop="43512" i_length="106">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43513" g_stop="44080" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="701" r_length="569" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E376924" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43275" e_stop="43406"/>
          <exon e_start="43513" e_stop="44080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACAAAAATACACGAAAGAAGAAAATGGAAGGAGGAACAGAAGCCTATCCAGATTTAGGTAGACATTGCCAACTATCTGATTGCCATCAACTCGATTTTCTCCCTTTTACCTGCCATGCCTGTTTAAAGGTTTGCCACTTTTATCCGTCCACCTTCACTTTGCGATTTTGCTTTTGGACATACACTACTGTATAAAATATTCAAAGGTTTTGATAATCATTGTTGCGATGTGCAGGTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGCTGTTGCTAAAGGAACCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGAATGGGAAAGATTGTGGGAATAAAAGTCGTGCCTCATCTCCAAGCCCTGCGAACCCTTCTGTGAAAGCTTGTTGATCGTTTCACAGCACATTACTATTCATTTGTCTTTTGTAATTACATTATTTTATGGAAAACAATGTTGTTCTA-TTTTCAATTTCTCCCTCCCTTCTATGATAAAACA</genome_strand>
        <mrna_strand>AAGAACAAAAATACACGAAAGAAGAAAATGGAAGGAGGAACAGAAGCCTATCCAGATTTAGGTAGACATTGCCAACTATCTGATTGCCATCAACTCGATTTTCTCCCTTTTACCTGCCATGCCTGTTTAAAG..........................................................................................................GTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGCTGTTGCTAAAGGAACCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGAATGGGAAAGATTGTGGGAATAAAAGTCGTGCCTCATCTCCAAGCCCTGCGAACCCTTCTGTGAAAGCTTGTTGATCGTTTCACAGCACATTACTATTCATTTGTCTTTTGTAATTACATTATTTTATTGAAAACAATGTTGTTCTATTTTTCAATTTCTCCCTCCCTTCTATGATAAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E243682" ref_strand="+" ref_description="SGN-E243682 [cLED-34-N12]">
      <seq>aagaacaaaaatacacgaaagaagaaaatggaaggaggaacagaagcctatccagatttaggtagacattgccaactatctgattgccatcaactcgattttctcccttttacctgccatgcctgtttaaaggtattttgtgtggaacatagatcatgcaagtctcatgaatgcccaaaatctgactttaacagccgaatcgttttggtttgcgaaatttgttctatgtccatggaaactaccggctgtaaagttgaagaccacaaagcaatattacaaaaacacgaggaatctggggattgtgaccctaagaagaagaagaagaaacctacctgtcctgtcaaaagatgcaaggggattttgaccttctcaaacactagcacttgcaagatatgccggattcaagtttgcctcagacacaggttccctgctgatcacgcctgtaaccccacttcttcatcatcacagctgttgctaaaggaacccaataacaagtttttgactgctttgcttgcaaggaatgggaaagattgtgggaataaaagtcgtgcctcatctccaagccctgcgaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="42975" stop="44254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43275" g_stop="43406" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43407" i_stop="43512" i_length="106">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43513" g_stop="43954" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="574" r_length="442" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E243682" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43275" e_stop="43406"/>
          <exon e_start="43513" e_stop="43954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACAAAAATACACGAAAGAAGAAAATGGAAGGAGGAACAGAAGCCTATCCAGATTTAGGTAGACATTGCCAACTATCTGATTGCCATCAACTCGATTTTCTCCCTTTTACCTGCCATGCCTGTTTAAAGGTTTGCCACTTTTATCCGTCCACCTTCACTTTGCGATTTTGCTTTTGGACATACACTACTGTATAAAATATTCAAAGGTTTTGATAATCATTGTTGCGATGTGCAGGTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGCTGTTGCTAAAGGAACCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGAATGGGAAAGATTGTGGGAATAAAAGTCGTGCCTCATCTCCAAGCCCTGCGAACC</genome_strand>
        <mrna_strand>AAGAACAAAAATACACGAAAGAAGAAAATGGAAGGAGGAACAGAAGCCTATCCAGATTTAGGTAGACATTGCCAACTATCTGATTGCCATCAACTCGATTTTCTCCCTTTTACCTGCCATGCCTGTTTAAAG..........................................................................................................GTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGCTGTTGCTAAAGGAACCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGAATGGGAAAGATTGTGGGAATAAAAGTCGTGCCTCATCTCCAAGCCCTGCGAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E233035" ref_strand="+" ref_description="SGN-E233035 [cLED-6-E7]">
      <seq>aagaacaaaaatacacgaaagaagaaaatggaaggaggaacagaagcctatccagatttaggtagacattgccaactatctgattgccatcaactcgattttctcccttttacctgccatgcctgtttaaaggtattttgtgtggaacatagatcatgcaagtctcatgaatgcccaaaatctgactttaacagccgaatcgttttggtttgcgaaatttgttctatgtccatggaaactaccggctgtaaagttgaagaccacaaagcaatattacaaaaacacgaggaatctggggattgtgaccctaagaagaagaagaagaaacctacctgtcctgtcaaaagatgcaaggggattttgaccttctcaaacactagcacttgcaagatatgccggattcaagtttgcctcagacacaggttccctgctgatcacgcctgtaaccccacttcttcatcatcacagctgttgctaaaggaacccaataacaagtttttgactgctttgcttgcaaggaatgggaaagattgtggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="42975" stop="44217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43275" g_stop="43406" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43407" i_stop="43512" i_length="106">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43513" g_stop="43917" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="537" r_length="405" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E233035" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43275" e_stop="43406"/>
          <exon e_start="43513" e_stop="43917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACAAAAATACACGAAAGAAGAAAATGGAAGGAGGAACAGAAGCCTATCCAGATTTAGGTAGACATTGCCAACTATCTGATTGCCATCAACTCGATTTTCTCCCTTTTACCTGCCATGCCTGTTTAAAGGTTTGCCACTTTTATCCGTCCACCTTCACTTTGCGATTTTGCTTTTGGACATACACTACTGTATAAAATATTCAAAGGTTTTGATAATCATTGTTGCGATGTGCAGGTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGCTGTTGCTAAAGGAACCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGAATGGGAAAGATTGTGGG</genome_strand>
        <mrna_strand>AAGAACAAAAATACACGAAAGAAGAAAATGGAAGGAGGAACAGAAGCCTATCCAGATTTAGGTAGACATTGCCAACTATCTGATTGCCATCAACTCGATTTTCTCCCTTTTACCTGCCATGCCTGTTTAAAG..........................................................................................................GTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGCTGTTGCTAAAGGAACCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGAATGGGAAAGATTGTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E235987" ref_strand="+" ref_description="SGN-E235987 [cLED-16-E6]">
      <seq>aagaacaaatttacacgaaagaagaaaatggaaggaggaacagaagcctatccagatttaggtagacattgccaactatctgattgccatcaactcgattttctcccttttacctgccatgcctgtttaaaggtattttgtgtggaacatagatcatgcaagtctcatgaatgcccaaaatctgactttaacagccgaatcgttttggtttgcgaaatttgttctatgtccatggaaactaccggctgtaaagttgaagaccacaaagcaatattacaaaaacacgaggaatctggggattgtgaccctaagaagaagaagaagaaacctacctgtcctgtcaaaagatgcaaggggattttgaccttctcaaacactagcacttgcaagatatgccggattcaagtttgcctcagacacaggttccctgctgatcacgcctgtaaccccacttcttcatcatcacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="42975" stop="44148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43275" g_stop="43406" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43407" i_stop="43512" i_length="106">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43513" g_stop="43848" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="468" r_length="336" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E235987" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43275" e_stop="43406"/>
          <exon e_start="43513" e_stop="43848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACAAAAATACACGAAAGAAGAAAATGGAAGGAGGAACAGAAGCCTATCCAGATTTAGGTAGACATTGCCAACTATCTGATTGCCATCAACTCGATTTTCTCCCTTTTACCTGCCATGCCTGTTTAAAGGTTTGCCACTTTTATCCGTCCACCTTCACTTTGCGATTTTGCTTTTGGACATACACTACTGTATAAAATATTCAAAGGTTTTGATAATCATTGTTGCGATGTGCAGGTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAG</genome_strand>
        <mrna_strand>AAGAACAAATTTACACGAAAGAAGAAAATGGAAGGAGGAACAGAAGCCTATCCAGATTTAGGTAGACATTGCCAACTATCTGATTGCCATCAACTCGATTTTCTCCCTTTTACCTGCCATGCCTGTTTAAAG..........................................................................................................GTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E350594" ref_strand="+" ref_description="SGN-E350594 [cTOS-5-B24]">
      <seq>aaaaatacacgaaagaagaaaatggaaggaggaacagaagcctatccagatttaggtagacattgccaactatctgattgccatcaactcgattttctcccttttacctgccatgcctgtttaaaggtattttgtgtggaacatagatcatgcaagtctcatgaatgcccaaaatctgactttaacagccgaatcgttttggtttgcgaaatttgttctatgtccatggaaactaccggctgtaaagttgaagaccacaaagcaatattacaaaaacacgaggaatctggggattgtgaccctaagaagaagaagaagaaacctacctgtcctgtcaaaagatgcaaggggattttgaccttctcaaacactagcacttgcaagatatgccggattcaagtttgcctcagacacaggttccctgctgatcacgcctgtaaccccacttcttcatcatcacagctgttgctaaaggaacccaataacaagtttttgactgctttgcttgcaaggaatgggaaagattgtgggaataaaagtcgtgcctcatctccaagccctgcgaacccttctgtgaaagcttgttgatcgtttcacagcacattactattcatttgtcttttgtaattacattattttatggaaaacaatgttgttctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="42981" stop="44346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43281" g_stop="43406" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43407" i_stop="43512" i_length="106">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43513" g_stop="44055" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="669" r_length="543" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E350594" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43281" e_stop="43406"/>
          <exon e_start="43513" e_stop="44055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATACACGAAAGAAGAAAATGGAAGGAGGAACAGAAGCCTATCCAGATTTAGGTAGACATTGCCAACTATCTGATTGCCATCAACTCGATTTTCTCCCTTTTACCTGCCATGCCTGTTTAAAGGTTTGCCACTTTTATCCGTCCACCTTCACTTTGCGATTTTGCTTTTGGACATACACTACTGTATAAAATATTCAAAGGTTTTGATAATCATTGTTGCGATGTGCAGGTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGCTGTTGCTAAAGGAACCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGAATGGGAAAGATTGTGGGAATAAAAGTCGTGCCTCATCTCCAAGCCCTGCGAACCCTTCTGTGAAAGCTTGTTGATCGTTTCACAGCACATTACTATTCATTTGTCTTTTGTAATTACATTATTTTATGGAAAACAATGTTGTTCTATTTTCAATT</genome_strand>
        <mrna_strand>AAAAATACACGAAAGAAGAAAATGGAAGGAGGAACAGAAGCCTATCCAGATTTAGGTAGACATTGCCAACTATCTGATTGCCATCAACTCGATTTTCTCCCTTTTACCTGCCATGCCTGTTTAAAG..........................................................................................................GTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGCTGTTGCTAAAGGAACCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGAATGGGAAAGATTGTGGGAATAAAAGTCGTGCCTCATCTCCAAGCCCTGCGAACCCTTCTGTGAAAGCTTGTTGATCGTTTCACAGCACATTACTATTCATTTGTCTTTTGTAATTACATTATTTTATGGAAAACAATGTTGTTCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E236208" ref_strand="+" ref_description="SGN-E236208 [cLED-20-D9]">
      <seq>aaatacacgaaagaagaaaatggaaggaggaacagaagcctatccagatttaggtagacattgccaactatctgattgccatcaactcgattttctcccttttacctgccatgcctgtttaaaggtattttgtgtggaacatagatcatgcaagtctcatgaatgcccaaaatctgactttaacagccgaatcgttttggtttgcgaaatttgttctatgtccatggaaactaccggctgttaagttgaagaccacaaagcaatattacaaaaacacgaggaatctggggattgggacccctagaagaagaagaagaaacctacctgtcctgtcaaaagatgcaaggggatattgaccttctcaaacactagcacttgcaagatatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="42983" stop="44077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43283" g_stop="43406" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43407" i_stop="43512" i_length="106">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43513" g_stop="43777" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="389" r_length="265" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E236208" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43283" e_stop="43406"/>
          <exon e_start="43513" e_stop="43777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATACACGAAAGAAGAAAATGGAAGGAGGAACAGAAGCCTATCCAGATTTAGGTAGACATTGCCAACTATCTGATTGCCATCAACTCGATTTTCTCCCTTTTACCTGCCATGCCTGTTTAAAGGTTTGCCACTTTTATCCGTCCACCTTCACTTTGCGATTTTGCTTTTGGACATACACTACTGTATAAAATATTCAAAGGTTTTGATAATCATTGTTGCGATGTGCAGGTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCC</genome_strand>
        <mrna_strand>AAATACACGAAAGAAGAAAATGGAAGGAGGAACAGAAGCCTATCCAGATTTAGGTAGACATTGCCAACTATCTGATTGCCATCAACTCGATTTTCTCCCTTTTACCTGCCATGCCTGTTTAAAG..........................................................................................................GTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTTAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGGGACCCCTAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATATTGACCTTCTCAAACACTAGCACTTGCAAGATATGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E280975" ref_strand="+" ref_description="SGN-E280975 [cLER-7-A18]">
      <seq>aatacacgaaagaagaaaatggaaggaggaacagaagcctatccagatttaggtagacattgccaactatctgattgccatcaactcgattttctcccttttacctgccatgcctgtttaaaggtattttgtgtggaacatagatcatgcaagtctcatgaatgcccaaaatctgactttaacagccgaatcgttttggtttgcgaaatttgttctatgtccatggaaactaccggctgtaaagttgaagaccacaaagcaatattacaaaaacacgaggaatctggggattgtgaccctaagaagaagaagaagaaacctacctgtcctgtcaaaagatgcaaggggattttgaccttctcaaacactagcacttgcaagatatgccggattcaagtttgcctcagacacaggttccctgctgatcacgcctgtaaccccacttcttcatcatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="42984" stop="44146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43284" g_stop="43406" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43407" i_stop="43512" i_length="106">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43513" g_stop="43846" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="457" r_length="334" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E280975" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43284" e_stop="43406"/>
          <exon e_start="43513" e_stop="43846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATACACGAAAGAAGAAAATGGAAGGAGGAACAGAAGCCTATCCAGATTTAGGTAGACATTGCCAACTATCTGATTGCCATCAACTCGATTTTCTCCCTTTTACCTGCCATGCCTGTTTAAAGGTTTGCCACTTTTATCCGTCCACCTTCACTTTGCGATTTTGCTTTTGGACATACACTACTGTATAAAATATTCAAAGGTTTTGATAATCATTGTTGCGATGTGCAGGTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCAC</genome_strand>
        <mrna_strand>AATACACGAAAGAAGAAAATGGAAGGAGGAACAGAAGCCTATCCAGATTTAGGTAGACATTGCCAACTATCTGATTGCCATCAACTCGATTTTCTCCCTTTTACCTGCCATGCCTGTTTAAAG..........................................................................................................GTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E244571" ref_strand="+" ref_description="SGN-E244571 [cLED-38-H11]">
      <seq>gaaagaagaaaatggaaggaggaacagaagcctatccagatttaggtagacattgccaactatctgattgccatcaactcgattttctcccttttacctgccatgcctgtttaaaggtattttgtgtggaacatagatcatgcaagtctcatgaatgcccaaaatctgactttaacagccgaatcgttttggtttgcgaaatttgttctatgtccatggaaactaccggctgtaaagttgaagaccacaaagcaatattacaaaaacacgaggaatctggggattgtgaccctaagaagaagaagaagaaacctacctgtcctgtcaaaagatgcaaggggattttgaccttctcaaacactagcacttgcaagatatgccggattcaagtttgcctcagacacaggttccctgctgatcacgcctgtaaccccacttcttcatcatcacagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="42991" stop="44149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43291" g_stop="43406" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43407" i_stop="43512" i_length="106">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43513" g_stop="43849" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="453" r_length="337" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E244571" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244571" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43291" e_stop="43406"/>
          <exon e_start="43513" e_stop="43849"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAAGAAAATGGAAGGAGGAACAGAAGCCTATCCAGATTTAGGTAGACATTGCCAACTATCTGATTGCCATCAACTCGATTTTCTCCCTTTTACCTGCCATGCCTGTTTAAAGGTTTGCCACTTTTATCCGTCCACCTTCACTTTGCGATTTTGCTTTTGGACATACACTACTGTATAAAATATTCAAAGGTTTTGATAATCATTGTTGCGATGTGCAGGTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGC</genome_strand>
        <mrna_strand>GAAAGAAGAAAATGGAAGGAGGAACAGAAGCCTATCCAGATTTAGGTAGACATTGCCAACTATCTGATTGCCATCAACTCGATTTTCTCCCTTTTACCTGCCATGCCTGTTTAAAG..........................................................................................................GTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E241273" ref_strand="+" ref_description="SGN-E241273 [cLED-26-F17]">
      <seq>gaaagaagaaaatggaaggaggaacagaagcctatccagatttaggtagacattgccaactatctgattgccatcaactcgattttctcccttttacctgccatgcctgtttaaaggtattttgtgtggaacatagatcatgcaagtctcatgaatgcccaaaatctgactttaacagccgaatcgttttggtttgcgaaatttgttctatgtccatggaaactaccggctgtaaagttgaagaccacaaagcaatattacaaaaacacgaggaatctggggattgtgaccctaagaagaagaagaagaaacctacctgtcctgtcaaaagatgcaaggggattttgaccttctcaaacactagcacttgcaagatatgccggattcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="42991" stop="44086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43291" g_stop="43406" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43407" i_stop="43512" i_length="106">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43513" g_stop="43786" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="390" r_length="274" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E241273" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241273" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43291" e_stop="43406"/>
          <exon e_start="43513" e_stop="43786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAAGAAAATGGAAGGAGGAACAGAAGCCTATCCAGATTTAGGTAGACATTGCCAACTATCTGATTGCCATCAACTCGATTTTCTCCCTTTTACCTGCCATGCCTGTTTAAAGGTTTGCCACTTTTATCCGTCCACCTTCACTTTGCGATTTTGCTTTTGGACATACACTACTGTATAAAATATTCAAAGGTTTTGATAATCATTGTTGCGATGTGCAGGTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAG</genome_strand>
        <mrna_strand>GAAAGAAGAAAATGGAAGGAGGAACAGAAGCCTATCCAGATTTAGGTAGACATTGCCAACTATCTGATTGCCATCAACTCGATTTTCTCCCTTTTACCTGCCATGCCTGTTTAAAG..........................................................................................................GTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E461176" ref_strand="-" ref_description="SGN-E461176 [cPRO-7-D23]">
      <seq>ggaacagaagcttatccagatttaggaaaacattgccaactatctgattgtcatcaactcgattttctcccttttacctgccattcctgtcaaaaggtattttgtgtggaacatagatcatgcaaatctcatgaatgcccaaaatccgactttaacagccgaatggttttggtttgcgaaatttgttctatgtccattgaaactaccggctgtcaggttgaagaccataaagcaatattacgaaaacacgaggaatctggggattgtgaccctaagaagaagaagaaacctgcctgccctgtgaagagatgcaaggggattttgaccttctccaacactagcacttgcaagacttgccggattcaagtttgcctcagacacaggtttcttgctgatcacgcctgtaaccgcacttcttcatcatcacagccgttggttaaggaagccaataacaagtttttgactgctttgcttgcaaggggtgggaatgattgtgggaataaaagtcgtgcctcatcctcacgccttgctaacccttctgttaaagcttgttgatcgtttcacagtgcattactgttcatttgtctattgtaattacattatttatgtacgaaaacattatttatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="43011" stop="44347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43311" g_stop="43406" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43407" i_stop="43512" i_length="106">
            <donor d_prob="0.947" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43513" g_stop="44050" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="629" r_length="533" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E461176" ref_strand="-">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E461176" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="43311" e_stop="43406"/>
          <exon e_start="43513" e_stop="44050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACAGAAGCCTATCCAGATTTAGGTAGACATTGCCAACTATCTGATTGCCATCAACTCGATTTTCTCCCTTTTACCTGCCATGCCTGTTTAAAGGTTTGCCACTTTTATCCGTCCACCTTCACTTTGCGATTTTGCTTTTGGACATACACTACTGTATAAAATATTCAAAGGTTTTGATAATCATTGTTGCGATGTGCAGGTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGCTGTTGCTAAAGGAACCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGAATGGGAAAGATTGTGGGAATAAAAGTCGTGCCTCATCTCCAAGCCCTGCGAACCCTTCTGTGAAAGCTTGTTGATCGTTTCACAGCACATTACTATTCATTTGTCTTTTGTAATTACATTATTTTATGGAAAACAATGTTGTTCTATTTT</genome_strand>
        <mrna_strand>GGAACAGAAGCTTATCCAGATTTAGGAAAACATTGCCAACTATCTGATTGTCATCAACTCGATTTTCTCCCTTTTACCTGCCATTCCTGTCAAAAG..........................................................................................................GTATTTTGTGTGGAACATAGATCATGCAAATCTCATGAATGCCCAAAATCCGACTTTAACAGCCGAATGGTTTTGGTTTGCGAAATTTGTTCTATGTCCATTGAAACTACCGGCTGTCAGGTTGAAGACCATAAAGCAATATTACGAAAACACGAGGAATCTGGGGATTGTGACCCT---AAGAAGAAGAAGAAACCTGCCTGCCCTGTGAAGAGATGCAAGGGGATTTTGACCTTCTCCAACACTAGCACTTGCAAGACTTGCCGGATTCAAGTTTGCCTCAGACACAGGTTTCTTGCTGATCACGCCTGTAACCGCACTTCTTCATCATCACAGCCGTTGGTTAAGGAAGCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGGGTGGGAATGATTGTGGGAATAAAAGTCGTGCCTCATCCTCACGCCTTGCTAACCCTTCTGTTAAAGCTTGTTGATCGTTTCACAGTGCATTACTGTTCATTTGTCTATTGTAATTACATTA-TTTATGTACGAAAACATTATT-TATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E458778" ref_strand="-" ref_description="SGN-E458778 [cPRO-7-I10]">
      <seq>tcatcaactcgattttctcccttttacntgccattcctgtcaaaaggtattttgtgtggaacatagatcatgcaaatctcatgaatgcccaaaatccgactttaacagccgaatggttttggtttgcgaaatttgttctatgtccattgaaactaccggctgtcaggttgaagaccataaagcaatattacgaaaacacgaggaatctggggattgtgaccctaagaagaagaagaaacctacctgccctgtgaagagatgcaaggggattttgaccttctccaacactagcacttgcaagacttgccggattcaagtttgcctcagacacaggtttcctgctgatcacgcctgtaaccgcacttcttcatcatcacagccgttggttaaggaagccaataacaagtttttgactgctttgcttgcaaggggtgggaatgattgtgggaataaaagtcgtgcctcatcctcacgccttgctaacccttctgttaaagcttgttgatcgtttcacagtgcattactgttcatttgtctattgtaattacattatttatgtacgaaaacattatttatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="43062" stop="44347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43361" g_stop="43406" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.891"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43407" i_stop="43512" i_length="106">
            <donor d_prob="0.947" d_score="0.89"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43513" g_stop="44050" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="579" r_length="533" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E458778" ref_strand="-">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E458778" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="43361" e_stop="43406"/>
          <exon e_start="43513" e_stop="44050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATCAACTCGATTTTCTCCCTTTTACCTGCCATGCCTGTTTAAAGGTTTGCCACTTTTATCCGTCCACCTTCACTTTGCGATTTTGCTTTTGGACATACACTACTGTATAAAATATTCAAAGGTTTTGATAATCATTGTTGCGATGTGCAGGTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGCTGTTGCTAAAGGAACCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGAATGGGAAAGATTGTGGGAATAAAAGTCGTGCCTCATCTCCAAGCCCTGCGAACCCTTCTGTGAAAGCTTGTTGATCGTTTCACAGCACATTACTATTCATTTGTCTTTTGTAATTACATTATTTTATGGAAAACAATGTTGTTCTATTTT</genome_strand>
        <mrna_strand>TCATCAACTCGATTTTCTCCCTTTTACNTGCCATTCCTGTCAAAAG..........................................................................................................GTATTTTGTGTGGAACATAGATCATGCAAATCTCATGAATGCCCAAAATCCGACTTTAACAGCCGAATGGTTTTGGTTTGCGAAATTTGTTCTATGTCCATTGAAACTACCGGCTGTCAGGTTGAAGACCATAAAGCAATATTACGAAAACACGAGGAATCTGGGGATTGTGACCCT---AAGAAGAAGAAGAAACCTACCTGCCCTGTGAAGAGATGCAAGGGGATTTTGACCTTCTCCAACACTAGCACTTGCAAGACTTGCCGGATTCAAGTTTGCCTCAGACACAGGTTTCCTGCTGATCACGCCTGTAACCGCACTTCTTCATCATCACAGCCGTTGGTTAAGGAAGCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGGGTGGGAATGATTGTGGGAATAAAAGTCGTGCCTCATCCTCACGCCTTGCTAACCCTTCTGTTAAAGCTTGTTGATCGTTTCACAGTGCATTACTGTTCATTTGTCTATTGTAATTACATTA-TTTATGTACGAAAACATTATT-TATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E228358" ref_strand="+" ref_description="SGN-E228358 [cLED-3-B15]">
      <seq>ttaaaggtattttgtgtggaacatagatcatgcaagtctcatgaatgcccaaaatctgactttaacagccgaatcgttttggtttgcgaaatttgttctatgtccatggaaactaccggctgtaaagttgaagaccacaaagcaatattacaaaaacacgaggaatctggggattgtgaccctaagaagaagaagaagaaacctacctgtcctgtcaaaagatgcaaggggattttgaccttctcaaacactagcacttgcaagatatgccggattcaagtttgcctcagacacaggttccctgctgatcacgcctgtaaccccacttcttcatcatcacagctgttgctaaaggaacccaataacaagtttttgactgctttgcttgcaaggaatgggaaagattgtgggaataaaagtcgtgcctcatctccaagccctgcgaacccttctgtgaaagcttgttgatcgtttcacagcacattactattcatttgtcttttgtaattacattattttatggaaaacaatgttgttctattctcaattgctccctcccttctatgataaaacaacgaatttaagaatgacatatcaattcggaatcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="43211" stop="44419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43401" g_stop="43406" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43407" i_stop="43512" i_length="106">
            <donor d_prob="0.947" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43513" g_stop="44123" g_length="611"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="617" r_length="611" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E228358" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228358" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43401" e_stop="43406"/>
          <exon e_start="43513" e_stop="44123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAGGTTTGCCACTTTTATCCGTCCACCTTCACTTTGCGATTTTGCTTTTGGACATACACTACTGTATAAAATATTCAAAGGTTTTGATAATCATTGTTGCGATGTGCAGGTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGCTGTTGCTAAAGGAACCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGAATGGGAAAGATTGTGGGAATAAAAGTCGTGCCTCATCTCCAAGCCCTGCGAACCCTTCTGTGAAAGCTTGTTGATCGTTTCACAGCACATTACTATTCATTTGTCTTTTGTAATTACATTATTTTATGGAAAACAATGTTGTTCTATTTTCAATTTCTCCCTCCCTTCTATGATAAAACAACGAATTTAAGAATGACATAACAATTCGGAATCATATAATCTT</genome_strand>
        <mrna_strand>TTAAAG..........................................................................................................GTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGCTGTTGCTAAAGGAACCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGAATGGGAAAGATTGTGGGAATAAAAGTCGTGCCTCATCTCCAAGCCCTGCGAACCCTTCTGTGAAAGCTTGTTGATCGTTTCACAGCACATTACTATTCATTTGTCTTTTGTAATTACATTATTTTATGGAAAACAATGTTGTTCTATTCTCAATTGCTCCCTCCCTTCTATGATAAAACAACGAATTTAAGAATGACATATCAATTCGGAATCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E283504" ref_strand="+" ref_description="SGN-E283504 [cLER-12-I7]">
      <seq>tttttttgaaaatagaacaacattgttttccataaaataatgtaattacaaaagacaaatgaatagtaatgtgctgtgaaacgatcaacaagctttcacagaagggttcgcagggcttggagatgaggcacgacttttattcccacaatctttcccattccttgcaagcaaagcagtcaaaaacttgttattgggttcctttagcaacagctgtgatgatgaagaagtggggttacaggcgtgatcagcagggaacctgtgtctgaggcaaacttgaatccggcatatcttgcaagtgctagtgtttgagaaggtcaaaatccccttgcatcttttgacaggacaggtaggtttcttcttcttcttcttagggtcacaatccccagattcctcgtgtttttgtaatattgctttgtggtcttcaactttacagccggtagtttccatggacatagaacaaatttcgcaaaccaaaacgattcggctgttaaagtcagattttgggcattcatgagacttgcatgatctatgttccacacaaaatacctttaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="44353" stop="43206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44058" g_stop="43504" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E283504" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44058" e_stop="43504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATTGAAAATAGAACAACATTGTTTTCCATAAAATAATGTAATTACAAAAGACAAATGAATAGTAATGTGCTGTGAAACGATCAACAAGCTTTCACAGAAGGGTTCGCAGGGCTTGGAGATGAGGCACGACTTTTATTCCCACAATCTTTCCCATTCCTTGCAAGCAAAGCAGTCAAAAACTTGTTATTGGGTTCCTTTAGCAACAGCTGTGATGATGAAGAAGTGGGGTTACAGGCGTGATCAGCAGGGAACCTGTGTCTGAGGCAAACTTGAATCCGGCATATCTTGCAAGTGCTAGTGTTTGAGAAGGTCAAAATCCCCTTGCATCTTTTGACAGGACAGGTAGGTTTCTTCTTCTTCTTCTTAGGGTCACAATCCCCAGATTCCTCGTGTTTTTGTAATATTGCTTTGTGGTCTTCAACTTTACAGCCGGTAGTTTCCATGGACATAGAACAAATTTCGCAAACCAAAACGATTCGGCTGTTAAAGTCAGATTTTGGGCATTCATGAGACTTGCATGATCTATGTTCCACACAAAATACCTGCACATC</genome_strand>
        <mrna_strand>TTTTTTTGAAAATAGAACAACATTGTTTTCCATAAAATAATGTAATTACAAAAGACAAATGAATAGTAATGTGCTGTGAAACGATCAACAAGCTTTCACAGAAGGGTTCGCAGGGCTTGGAGATGAGGCACGACTTTTATTCCCACAATCTTTCCCATTCCTTGCAAGCAAAGCAGTCAAAAACTTGTTATTGGGTTCCTTTAGCAACAGCTGTGATGATGAAGAAGTGGGGTTACAGGCGTGATCAGCAGGGAACCTGTGTCTGAGGCAAACTTGAATCCGGCATATCTTGCAAGTGCTAGTGTTTGAGAAGGTCAAAATCCCCTTGCATCTTTTGACAGGACAGGTAGGTTTCTTCTTCTTCTTCTTAGGGTCACAATCCCCAGATTCCTCGTGTTTTTGTAATATTGCTTTGTGGTCTTCAACTTTACAGCCGGTAGTTTCCATGGACATAGAACAAATTTCGCAAACCAAAACGATTCGGCTGTTAAAGTCAGATTTTGGGCATTCATGAGACTTGCATGATCTATGTTCCACACAAAATACCTTTAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355434" ref_strand="+" ref_description="SGN-E355434 [cTOS-25-K8]">
      <seq>caagtctcatgaatgcccaaaatctgactttaacagccgaatcgttttggtttgcgaaatttgttctatgtccatggaaactaccggctgtaaagttgaagaccacaaagcaatattacaaaaacacgaggaatctggggattgtgaccctaagaagaagaagaagaaacctacctgtcctgtcaaaagatgcaaggggattttgaccttctcaaacactagcacttgcaagatatgccggattcaagtttgcctcagacacaggttccctgctgatcacgcctgtaaccccacttcttcatcatcacagctgttgctaaaggaacccaataacaagtttttgactgctttgcttgcaaggaatgggaaagattgtgggaataaaagtcgtgcctcatctccaagccctgcgaacccttctgtgaaagcttgttgatcgtttcacagcacattactattcatttgtcttttgtaattacattattttatggaaaacaatgttgttctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="43239" stop="44346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43539" g_stop="44055" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E355434" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43539" e_stop="44055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGCTGTTGCTAAAGGAACCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGAATGGGAAAGATTGTGGGAATAAAAGTCGTGCCTCATCTCCAAGCCCTGCGAACCCTTCTGTGAAAGCTTGTTGATCGTTTCACAGCACATTACTATTCATTTGTCTTTTGTAATTACATTATTTTATGGAAAACAATGTTGTTCTATTTTCAATT</genome_strand>
        <mrna_strand>CAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGCTGTTGCTAAAGGAACCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGAATGGGAAAGATTGTGGGAATAAAAGTCGTGCCTCATCTCCAAGCCCTGCGAACCCTTCTGTGAAAGCTTGTTGATCGTTTCACAGCACATTACTATTCATTTGTCTTTTGTAATTACATTATTTTATGGAAAACAATGTTGTTCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E349062" ref_strand="+" ref_description="SGN-E349062 [cTOS-2-C18]">
      <seq>caagtctcatgaatgcccaaaatctgactttaacagccgaatcgttttggtttgcgaaatttgttctatgtccatggaaactaccggctgtaaagttgaagaccacaaagcaatattacaaaaacacgaggaatctggggattgtgaccctaagaagaagaagaagaaacctacctgtcctgtcaaaagatgcaaggggattttgaccttctcaaacactagcacttgcaagatatgccggattcaagtttgcctcagacacaggttccctgctgatcacgcctgtaaccccacttcttcatcatcacagctgttgctaaaggaacccaataacaagtttttgactgctttgcttgcaaggaatgggaaagattgtgggaataaaagtcgtgcctcatctccaagccctgcgaacccttctgtgaaagcttgttgatcgtttcacagcacattactattcatttgtcttttgtaattacattattttatggaaaacaatgttgttctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="43239" stop="44346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43539" g_stop="44045" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="508" polyA_stop="519"/>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E349062" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43539" e_stop="44045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGCTGTTGCTAAAGGAACCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGAATGGGAAAGATTGTGGGAATAAAAGTCGTGCCTCATCTCCAAGCCCTGCGAACCCTTCTGTGAAAGCTTGTTGATCGTTTCACAGCACATTACTATTCATTTGTCTTTTGTAATTACATTATTTTATGGAAAACAATGTTGTTCT</genome_strand>
        <mrna_strand>CAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGCTGTTGCTAAAGGAACCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGAATGGGAAAGATTGTGGGAATAAAAGTCGTGCCTCATCTCCAAGCCCTGCGAACCCTTCTGTGAAAGCTTGTTGATCGTTTCACAGCACATTACTATTCATTTGTCTTTTGTAATTACATTATTTTATGGAAAACAATGTTGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352231" ref_strand="+" ref_description="SGN-E352231 [cTOS-13-N1]">
      <seq>caagtctcatgaatgcccaaaatctgactttaacagccgaatcgttttggtttgcgaaatttgttctatgtccatggaaactaccggctgtaaagttgaagaccacaaagcaatattacaaaaacacgaggaatctggggattgtgaccctaagaagaagaagaagaaacctacctgtcctgtcaaaagatgcaaggggattttgaccttctcaaacactagcacttgcaagatatgccggattcaagtttgcctcagacacaggttccctgctgatcacgcctgtaaccccacttcttcatcatcacagctgttgctaaaggaacccaataacaagtttttgactgctttgcttgcaaggaatgggaaagattgtgggaataaaagtcgtgcctcatctccaagccctgcgaacccttctgtgaaagcttgttgatcgtttcacagcacattactattcatttgtcttttgtaattacattattttatggaaaacaatgttgttctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="43239" stop="44346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43539" g_stop="44045" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="508" polyA_stop="519"/>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E352231" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43539" e_stop="44045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGCTGTTGCTAAAGGAACCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGAATGGGAAAGATTGTGGGAATAAAAGTCGTGCCTCATCTCCAAGCCCTGCGAACCCTTCTGTGAAAGCTTGTTGATCGTTTCACAGCACATTACTATTCATTTGTCTTTTGTAATTACATTATTTTATGGAAAACAATGTTGTTCT</genome_strand>
        <mrna_strand>CAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGCTGTTGCTAAAGGAACCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGAATGGGAAAGATTGTGGGAATAAAAGTCGTGCCTCATCTCCAAGCCCTGCGAACCCTTCTGTGAAAGCTTGTTGATCGTTTCACAGCACATTACTATTCATTTGTCTTTTGTAATTACATTATTTTATGGAAAACAATGTTGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E298779" ref_strand="+" ref_description="SGN-E298779 [cLET-44-K9]">
      <seq>cgttttggtttgcgaaatttgttctatgtccatggaaactaccggctgtaaagttgaagaccacaaagcaatattacaaaaacacgaggaatctggggattgtgaccctaagaagaagaagaagaaacctacctgtcctgtcaaaagatgcaaggggattttgaccttctcaaacactagcacttgcaagatatgccggattcaagtttgcctcagacacaggttccctgctgatcacgcctgtaaccccacttcttcatcatcacagctgttgctaaaggaacccaataacaagtttttgactgctttgcttgcaaggaatgggaaagattgtgggaataaaagtcgtgcctcatctgcaagccctgcgaacccttctgtgaaagcttgttgatcgtttcacagcacattactattcatttgtcttttgtaattacattattttatggaaaacaatgttgatctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="43281" stop="44346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43581" g_stop="44055" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E298779" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43581" e_stop="44055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGCTGTTGCTAAAGGAACCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGAATGGGAAAGATTGTGGGAATAAAAGTCGTGCCTCATCTCCAAGCCCTGCGAACCCTTCTGTGAAAGCTTGTTGATCGTTTCACAGCACATTACTATTCATTTGTCTTTTGTAATTACATTATTTTATGGAAAACAATGTTGTTCTATTTTCAATT</genome_strand>
        <mrna_strand>CGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGCTGTTGCTAAAGGAACCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGAATGGGAAAGATTGTGGGAATAAAAGTCGTGCCTCATCTGCAAGCCCTGCGAACCCTTCTGTGAAAGCTTGTTGATCGTTTCACAGCACATTACTATTCATTTGTCTTTTGTAATTACATTATTTTATGGAAAACAATGTTGATCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E544442" ref_strand="+" ref_description="SGN-E544442 [TUS-66-M11](-)">
      <seq>aaggaatatcactgcagctcagcatgtaccgtcagtaaggccagccgaagcttcaagaatggttcatatggcaggatatgacctcatcgactcttctcagctaaaagtccttacccctgtgaccatgaggtcagcactgggtgccaggaatccattgacaggtcttccctctgcaaatggaggcatgctacacagaccatatcctgatcaacctcctttgaccgttgccagtctattaaattcgctcggtttggggaaatacactatccactttcaagccgaggaggtagacatggctgcactgaagcaaatgggggaccgtgacctgaaggaattggggataccaatgggacccaggaagaagattctcttggctatgctttcccaaacttagaagacctgtgtagtatggtagttatatttattcaattcaatgctcctgtttctaagctgaagttatcaagctggctgttcttgggaaatgtatataaagggtagcggtataatgctggagtatttggctgatatttgttgtataatagacagtatataacagtgaaattatctctttcgtttttgggagaggctgatctttttgtgaatttattttagagaactgttcaacatgagatgcggtttgaagttattcatatagagaagattatatgattccgaattgttatgtcattctaaaaaaaaaaaaaaaaaaaaaaactcgagggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="47279" stop="43786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46979" g_stop="46775" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46774" i_stop="45952" i_length="823">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45951" g_stop="45871" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="286" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45870" i_stop="44735" i_length="1136">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44734" g_stop="44672" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="349" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44671" i_stop="44432" i_length="240">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44431" g_stop="44087" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="694" r_length="345" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="695" polyA_stop="715"/>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E544442" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46979" e_stop="46775"/>
          <exon e_start="45951" e_stop="45871"/>
          <exon e_start="44734" e_stop="44672"/>
          <exon e_start="44431" e_stop="44087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGCAGGATATGACCTCATCGACTCTTCTCAGCTAAAAGTCCTTACCCCTGTGACCATGAGGTCAGCACTGGGTGCCAGGAATCCATTGACAGGTCTTCCCTCTGCAAATGGAGGCATGCTACACAGACCATATCCTGTACGAACCTACTTATTGTTCATCTTACTGAATTTCTATCTTGAATCATTGCTGGTAGAATTCTTGTCTTATCTTGAACTGGATAACTGAAGTAGGTATTTTATGTGACATTCAAGATCATGAGCTCGGCTGTAACCTCTTTAGTATTTTATGTGACACTCAAGATCATGAGCTCGGCTGTAACCTCTTTAGTTGTTCTCCTTCTGGGGAACAACACAGACAGTGTTACTTAAACTAGCAGATCAGTTTTTACTCGAGATAGTTTTTCTGGCTCTACTCCACCCTGACATGCTTCCTGCTATTTTTTGTCAAGCCAAATTGTTGCCTATATTTTCTCTGTATGCTGGACTTTAGCACTGCTTATATTTAAAATGACAGATTGCTGATGGAAGTTAAATTACTATGGCATTGTTTGACCATGTTCAAGAATTGCCTTGGTTGCTAATGCTCATTGGAAATTTCTTTTGTCTGCGTTGTTTTACTATTATCTGTGTGATTTTCCTACAATTTTTTCTATTTCTCCTTCCTGCAACATAGCATTCTTTGCATTCCTTTGAATGATATTGAAATTTCAGGGAGTTATATTGAAAACTTTTATGTTTATTCATATGTCAATATTTCTGCATTGCTTGTCAACAAAGTCCAAATTAGTTGTTAGTTCTCACAATTAATGTCTTTCTCATAACACCATCTTTTCTTAGCTACTATGGATTTTTGTCTCATTTCCCTTTATGCCTGGTATGAAGGAGAAGGGAAGAAATATTTGTAAATGGACAGAATTTATATGAATATCTTAAACATTGTTCTATCTGGTGTTGTACAGGATCAACCTCCTTTGACCGTTGCCAGTCTATTAAATTCGCTCGGTTTGGGGAAATACACTATCCACTTTCAAGCCGAGGAGGTGAATAGTACTATTGTTAAATGATGAAGCACATGTTTTAGTTTTTATATCGTTTCTTTGTTATTACATTATCTCAGCATTATGAGCATTTTAAATATCAATTCTGGTACTGTGGCTGAAAAAGTCTCAAGGCTGAACTAGATTTCACTGCAAAAAGTAACAAGGTCATGGCATGTAGTTTCATGTTGAATAGAGAACCTTCTCGTCTTCACAATAAAAGGATTATTTTTTATGAGGAGCAAGATAAAATGGTACTTAATATTCTGCATTAAATCTTTTCTCCTGGTGTACTTGATTCCTATTGCACACATATATACAGTTAGCAGGCTGCTCATTATTTAGAGAAGTACCTTCTGTTATGTGGTGCGGTGGCGGAGGAGCCAGGAATTCAAAGAAAGTTCTTTTGCCATAGAGATTCAACAGCTCAAATATATACAAAAAAATGGTTCTTCCCTATCTACAGTGTAGTTTTTCAATGGAGGGGGTTCAATTGATTCCCCTTGCACCCTGGTGTGATGAATATGTTATGTGACAAATCTTCTAATAGTTGGTTAGATTTACGTGTTCGAACCCAAATCAATCTTTGAAGTTTCTTCGTTTGTCTGCATCACAAATTAATTATGTCACATGTTACTTATCCCATGACATTTCCTATTTAGTCCATTTGATCTACCTCTTTGTCTGTCCTCCCAACTAATCAACTTGTTAATAGATACATTACGGGCCTTTCAAATTCTTTACATAAATGTCTTTTGTTGTTTATAATGCCTCCTGAGGTATTATTTGTCACCTCGAAGCCCTTCATCTCTTCTGTTGTCCTCCTGTCTGATCATGTGCTCATCTTGGACTTCTAATATGAGATTATTACTTGTGTAAAGGATAGTAGCCTCACTGCTGTTCACAAATTGAAAGTTGCACCATTGGCCCATAACATTCTCAATCATCCTGTATTTTCCCCATCCATGTCCTTAGTGACACGGTTCAACTGAATAATCAGCCCATCTCTTTTATCTGTTTGTTCACGTGCCTCGCTTAATGTTTTTGATTAAGTGATTTAGTTAACTTTGCCAAGAACCTGAGATATCCTAGTTCAACTCCTTTCTTTAGTGATGTGATGCCTGTTTTACCCATTTCAGGTAGACATGGCTGCACTGAAGCAAATGGGGGACCGTGACCTGAAGGAATTGGGGATACCAATGGTACGTGTTGTTTCAGTCACCTTATTTGGAGGATCACACTGTTCACAAATTCTACTGCAAGTTCATATATGCTAATTTTGCTATGCATGGTGACACCTATTCACTTCCCTGAAAATAATGGGATATTATCTCGTTGGGGTGGGAAGAAGGCTAAGCTTCTCTTGATTATACTGAACTGTTGGATAGTTGCTACGCTTGTCCCATTTTAGCCTCTAATTGTTGCATTCTGGGGATTTGCAGGGACCCAGGAAGAAGATTCTCTTGGCTATGCTTTCCCAAACTTAGAAGACCTGTGTAGTATGGTAGTTATATTTATTCAATTCAATGCTCCTGTTTCTAAGCTGAAGTTATCAAGCTGGCTGTTCTTGGGAAATGTATATAAAGGGTAGCGGTATAATGCTGGAGTATTTGGCTGATATTTGTTGTATAATAGACAGTATATAACAGTGAAATTATCTCTTTCGTTTTTGGGAGAGGCTGATCTTTTTGTGAATTTATTTTAGAGAACTGTTCAACATGAGATGCGGTTTGAAGTTATTCATATAGAGAAGATTATATGATTCCGAATTGTTATGTCATTCTTAA</genome_strand>
        <mrna_strand>AAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGCAGGATATGACCTCATCGACTCTTCTCAGCTAAAAGTCCTTACCCCTGTGACCATGAGGTCAGCACTGGGTGCCAGGAATCCATTGACAGGTCTTCCCTCTGCAAATGGAGGCATGCTACACAGACCATATCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAACCTCCTTTGACCGTTGCCAGTCTATTAAATTCGCTCGGTTTGGGGAAATACACTATCCACTTTCAAGCCGAGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGACATGGCTGCACTGAAGCAAATGGGGGACCGTGACCTGAAGGAATTGGGGATACCAATG................................................................................................................................................................................................................................................GGACCCAGGAAGAAGATTCTCTTGGCTATGCTTTCCCAAACTTAGAAGACCTGTGTAGTATGGTAGTTATATTTATTCAATTCAATGCTCCTGTTTCTAAGCTGAAGTTATCAAGCTGGCTGTTCTTGGGAAATGTATATAAAGGGTAGCGGTATAATGCTGGAGTATTTGGCTGATATTTGTTGTATAATAGACAGTATATAACAGTGAAATTATCTCTTTCGTTTTTGGGAGAGGCTGATCTTTTTGTGAATTTATTTTAGAGAACTGTTCAACATGAGATGCGGTTTGAAGTTATTCATATAGAGAAGATTATATGATTCCGAATTGTTATGTCATTCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E374382" ref_strand="+" ref_description="SGN-E374382 [TUS-33-J22](-)">
      <seq>ttagatcaagatccccttatagacttgcaaacgattctaaagaagtctcttcttcaaggaatatcactgcagctcagcatgtaccgtcagtaaggccagccgaagcttcaagaatggttcatatggcaggatatgacctcatcgactcttctcagctaaaagtccttacccctgtgaccatgaggtcagcactgggtgccaggaatccattgacaggtcttccctctgcaaatggaggcatgctacacagaccatatcctgatcaacctcctttgaccgttgccagtctattaaattcgctcggtttggggaaatacactatccactttcaagccgaggaggtagacatggctgcactgaagcaaatgggggaccgtgacctgaaggaattggggataccaatgggacccaggaagaagattctcttggctatgctttcccaaacttagaagacctgtgtagtatggtagttatatttattcaattcaatgctcctgtttctaagctgaagttatcaagctggctgttcttgggaaatgtatataaagggtagcggtataatgctggagtatttggctgatatttgttgtataatagacagtatataacagtgaaattatctctttcgtttttgggagaggctgatctttttgtgaatttattttagagaactgttcaacatgagatgcggtttgaagttattcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="47334" stop="43822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47034" g_stop="46775" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46774" i_stop="45952" i_length="823">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45951" g_stop="45871" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="341" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45870" i_stop="44735" i_length="1136">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44734" g_stop="44672" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="404" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44671" i_stop="44432" i_length="240">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44431" g_stop="44122" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="714" r_length="310" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E374382" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47034" e_stop="46775"/>
          <exon e_start="45951" e_stop="45871"/>
          <exon e_start="44734" e_stop="44672"/>
          <exon e_start="44431" e_stop="44122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGCAGGATATGACCTCATCGACTCTTCTCAGCTAAAAGTCCTTACCCCTGTGACCATGAGGTCAGCACTGGGTGCCAGGAATCCATTGACAGGTCTTCCCTCTGCAAATGGAGGCATGCTACACAGACCATATCCTGTACGAACCTACTTATTGTTCATCTTACTGAATTTCTATCTTGAATCATTGCTGGTAGAATTCTTGTCTTATCTTGAACTGGATAACTGAAGTAGGTATTTTATGTGACATTCAAGATCATGAGCTCGGCTGTAACCTCTTTAGTATTTTATGTGACACTCAAGATCATGAGCTCGGCTGTAACCTCTTTAGTTGTTCTCCTTCTGGGGAACAACACAGACAGTGTTACTTAAACTAGCAGATCAGTTTTTACTCGAGATAGTTTTTCTGGCTCTACTCCACCCTGACATGCTTCCTGCTATTTTTTGTCAAGCCAAATTGTTGCCTATATTTTCTCTGTATGCTGGACTTTAGCACTGCTTATATTTAAAATGACAGATTGCTGATGGAAGTTAAATTACTATGGCATTGTTTGACCATGTTCAAGAATTGCCTTGGTTGCTAATGCTCATTGGAAATTTCTTTTGTCTGCGTTGTTTTACTATTATCTGTGTGATTTTCCTACAATTTTTTCTATTTCTCCTTCCTGCAACATAGCATTCTTTGCATTCCTTTGAATGATATTGAAATTTCAGGGAGTTATATTGAAAACTTTTATGTTTATTCATATGTCAATATTTCTGCATTGCTTGTCAACAAAGTCCAAATTAGTTGTTAGTTCTCACAATTAATGTCTTTCTCATAACACCATCTTTTCTTAGCTACTATGGATTTTTGTCTCATTTCCCTTTATGCCTGGTATGAAGGAGAAGGGAAGAAATATTTGTAAATGGACAGAATTTATATGAATATCTTAAACATTGTTCTATCTGGTGTTGTACAGGATCAACCTCCTTTGACCGTTGCCAGTCTATTAAATTCGCTCGGTTTGGGGAAATACACTATCCACTTTCAAGCCGAGGAGGTGAATAGTACTATTGTTAAATGATGAAGCACATGTTTTAGTTTTTATATCGTTTCTTTGTTATTACATTATCTCAGCATTATGAGCATTTTAAATATCAATTCTGGTACTGTGGCTGAAAAAGTCTCAAGGCTGAACTAGATTTCACTGCAAAAAGTAACAAGGTCATGGCATGTAGTTTCATGTTGAATAGAGAACCTTCTCGTCTTCACAATAAAAGGATTATTTTTTATGAGGAGCAAGATAAAATGGTACTTAATATTCTGCATTAAATCTTTTCTCCTGGTGTACTTGATTCCTATTGCACACATATATACAGTTAGCAGGCTGCTCATTATTTAGAGAAGTACCTTCTGTTATGTGGTGCGGTGGCGGAGGAGCCAGGAATTCAAAGAAAGTTCTTTTGCCATAGAGATTCAACAGCTCAAATATATACAAAAAAATGGTTCTTCCCTATCTACAGTGTAGTTTTTCAATGGAGGGGGTTCAATTGATTCCCCTTGCACCCTGGTGTGATGAATATGTTATGTGACAAATCTTCTAATAGTTGGTTAGATTTACGTGTTCGAACCCAAATCAATCTTTGAAGTTTCTTCGTTTGTCTGCATCACAAATTAATTATGTCACATGTTACTTATCCCATGACATTTCCTATTTAGTCCATTTGATCTACCTCTTTGTCTGTCCTCCCAACTAATCAACTTGTTAATAGATACATTACGGGCCTTTCAAATTCTTTACATAAATGTCTTTTGTTGTTTATAATGCCTCCTGAGGTATTATTTGTCACCTCGAAGCCCTTCATCTCTTCTGTTGTCCTCCTGTCTGATCATGTGCTCATCTTGGACTTCTAATATGAGATTATTACTTGTGTAAAGGATAGTAGCCTCACTGCTGTTCACAAATTGAAAGTTGCACCATTGGCCCATAACATTCTCAATCATCCTGTATTTTCCCCATCCATGTCCTTAGTGACACGGTTCAACTGAATAATCAGCCCATCTCTTTTATCTGTTTGTTCACGTGCCTCGCTTAATGTTTTTGATTAAGTGATTTAGTTAACTTTGCCAAGAACCTGAGATATCCTAGTTCAACTCCTTTCTTTAGTGATGTGATGCCTGTTTTACCCATTTCAGGTAGACATGGCTGCACTGAAGCAAATGGGGGACCGTGACCTGAAGGAATTGGGGATACCAATGGTACGTGTTGTTTCAGTCACCTTATTTGGAGGATCACACTGTTCACAAATTCTACTGCAAGTTCATATATGCTAATTTTGCTATGCATGGTGACACCTATTCACTTCCCTGAAAATAATGGGATATTATCTCGTTGGGGTGGGAAGAAGGCTAAGCTTCTCTTGATTATACTGAACTGTTGGATAGTTGCTACGCTTGTCCCATTTTAGCCTCTAATTGTTGCATTCTGGGGATTTGCAGGGACCCAGGAAGAAGATTCTCTTGGCTATGCTTTCCCAAACTTAGAAGACCTGTGTAGTATGGTAGTTATATTTATTCAATTCAATGCTCCTGTTTCTAAGCTGAAGTTATCAAGCTGGCTGTTCTTGGGAAATGTATATAAAGGGTAGCGGTATAATGCTGGAGTATTTGGCTGATATTTGTTGTATAATAGACAGTATATAACAGTGAAATTATCTCTTTCGTTTTTGGGAGAGGCTGATCTTTTTGTGAATTTATTTTAGAGAACTGTTCAACATGAGATGCGGTTTGAAGTTATTCATATAGAGAA</genome_strand>
        <mrna_strand>TTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGCAGGATATGACCTCATCGACTCTTCTCAGCTAAAAGTCCTTACCCCTGTGACCATGAGGTCAGCACTGGGTGCCAGGAATCCATTGACAGGTCTTCCCTCTGCAAATGGAGGCATGCTACACAGACCATATCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAACCTCCTTTGACCGTTGCCAGTCTATTAAATTCGCTCGGTTTGGGGAAATACACTATCCACTTTCAAGCCGAGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGACATGGCTGCACTGAAGCAAATGGGGGACCGTGACCTGAAGGAATTGGGGATACCAATG................................................................................................................................................................................................................................................GGACCCAGGAAGAAGATTCTCTTGGCTATGCTTTCCCAAACTTAGAAGACCTGTGTAGTATGGTAGTTATATTTATTCAATTCAATGCTCCTGTTTCTAAGCTGAAGTTATCAAGCTGGCTGTTCTTGGGAAATGTATATAAAGGGTAGCGGTATAATGCTGGAGTATTTGGCTGATATTTGTTGTATAATAGACAGTATATAACAGTGAAATTATCTCTTTCGTTTTTGGGAGAGGCTGATCTTTTTGTGAATTTATTTTAGAGAACTGTTCAACATGAGATGCGGTTTGAAGTTATTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E432639" ref_strand="-" ref_description="SGN-E432639 [STM-57-G20]">
      <seq>gcagattgaagaaagaaaaagggagcagcataagaggatgacaagaagtgtcaatctgcagaacaatctcacaggaggcttgtcaccagcagccaaccgtcgtcaggagctagcgaattgcttcaaatagaggcaattagatcctcctatacatcacaaactgctggtggtgttagactaagatccccttatagacttgcaaacgattctaaagaactctcttcttcaaggaatatcactgcagctcagcatgtaccatcagtaaggccagctgaagcttcaagaatggttcatatggcgggaaatgacctcatcgactcttctcagctaaaagtccttaaccctgtgaccatgaggtcagcactggctgccaggaatccattgacaggtcttccctctgcaaatggaagcatgctacaaagcccatatcctgatcaacctcctgtgaccgtagccagtctattaaattcgctcggtttggggaagtacgctatccactttcaagccgaggaggtagacatggctgcactgaagcaaatgggggaccgtgacctgaaggaactagggataccaatgggacccaggaagaagattctactggctatgctttcccaaactagaaggcctgtgtaatatggtagttttatgtgttcaatgcaatgctcccctattgtttttagctgaagttatcaaactggctgttcttgggaaatgtatataaagggtagcagtaaaatgctagagtattggaagaatgtttgttgtataaaagacagtatataacagtgaaattatctctttcgttaaaaaaaaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="47507" stop="43906"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47207" g_stop="46775" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="432" r_length="432" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46774" i_stop="45952" i_length="823">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45951" g_stop="45871" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="513" r_length="81" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45870" i_stop="44735" i_length="1136">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44734" g_stop="44672" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="576" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44671" i_stop="44432" i_length="240">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.925" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44431" g_stop="44194" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="817" r_length="241" r_score="0.832"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E432639" ref_strand="-">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E432639" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="47207" e_stop="46775"/>
          <exon e_start="45951" e_stop="45871"/>
          <exon e_start="44734" e_stop="44672"/>
          <exon e_start="44431" e_stop="44194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAAGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGCTGGTGTTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGCAGGATATGACCTCATCGACTCTTCTCAGCTAAAAGTCCTTACCCCTGTGACCATGAGGTCAGCACTGGGTGCCAGGAATCCATTGACAGGTCTTCCCTCTGCAAATGGAGGCATGCTACACAGACCATATCCTGTACGAACCTACTTATTGTTCATCTTACTGAATTTCTATCTTGAATCATTGCTGGTAGAATTCTTGTCTTATCTTGAACTGGATAACTGAAGTAGGTATTTTATGTGACATTCAAGATCATGAGCTCGGCTGTAACCTCTTTAGTATTTTATGTGACACTCAAGATCATGAGCTCGGCTGTAACCTCTTTAGTTGTTCTCCTTCTGGGGAACAACACAGACAGTGTTACTTAAACTAGCAGATCAGTTTTTACTCGAGATAGTTTTTCTGGCTCTACTCCACCCTGACATGCTTCCTGCTATTTTTTGTCAAGCCAAATTGTTGCCTATATTTTCTCTGTATGCTGGACTTTAGCACTGCTTATATTTAAAATGACAGATTGCTGATGGAAGTTAAATTACTATGGCATTGTTTGACCATGTTCAAGAATTGCCTTGGTTGCTAATGCTCATTGGAAATTTCTTTTGTCTGCGTTGTTTTACTATTATCTGTGTGATTTTCCTACAATTTTTTCTATTTCTCCTTCCTGCAACATAGCATTCTTTGCATTCCTTTGAATGATATTGAAATTTCAGGGAGTTATATTGAAAACTTTTATGTTTATTCATATGTCAATATTTCTGCATTGCTTGTCAACAAAGTCCAAATTAGTTGTTAGTTCTCACAATTAATGTCTTTCTCATAACACCATCTTTTCTTAGCTACTATGGATTTTTGTCTCATTTCCCTTTATGCCTGGTATGAAGGAGAAGGGAAGAAATATTTGTAAATGGACAGAATTTATATGAATATCTTAAACATTGTTCTATCTGGTGTTGTACAGGATCAACCTCCTTTGACCGTTGCCAGTCTATTAAATTCGCTCGGTTTGGGGAAATACACTATCCACTTTCAAGCCGAGGAGGTGAATAGTACTATTGTTAAATGATGAAGCACATGTTTTAGTTTTTATATCGTTTCTTTGTTATTACATTATCTCAGCATTATGAGCATTTTAAATATCAATTCTGGTACTGTGGCTGAAAAAGTCTCAAGGCTGAACTAGATTTCACTGCAAAAAGTAACAAGGTCATGGCATGTAGTTTCATGTTGAATAGAGAACCTTCTCGTCTTCACAATAAAAGGATTATTTTTTATGAGGAGCAAGATAAAATGGTACTTAATATTCTGCATTAAATCTTTTCTCCTGGTGTACTTGATTCCTATTGCACACATATATACAGTTAGCAGGCTGCTCATTATTTAGAGAAGTACCTTCTGTTATGTGGTGCGGTGGCGGAGGAGCCAGGAATTCAAAGAAAGTTCTTTTGCCATAGAGATTCAACAGCTCAAATATATACAAAAAAATGGTTCTTCCCTATCTACAGTGTAGTTTTTCAATGGAGGGGGTTCAATTGATTCCCCTTGCACCCTGGTGTGATGAATATGTTATGTGACAAATCTTCTAATAGTTGGTTAGATTTACGTGTTCGAACCCAAATCAATCTTTGAAGTTTCTTCGTTTGTCTGCATCACAAATTAATTATGTCACATGTTACTTATCCCATGACATTTCCTATTTAGTCCATTTGATCTACCTCTTTGTCTGTCCTCCCAACTAATCAACTTGTTAATAGATACATTACGGGCCTTTCAAATTCTTTACATAAATGTCTTTTGTTGTTTATAATGCCTCCTGAGGTATTATTTGTCACCTCGAAGCCCTTCATCTCTTCTGTTGTCCTCCTGTCTGATCATGTGCTCATCTTGGACTTCTAATATGAGATTATTACTTGTGTAAAGGATAGTAGCCTCACTGCTGTTCACAAATTGAAAGTTGCACCATTGGCCCATAACATTCTCAATCATCCTGTATTTTCCCCATCCATGTCCTTAGTGACACGGTTCAACTGAATAATCAGCCCATCTCTTTTATCTGTTTGTTCACGTGCCTCGCTTAATGTTTTTGATTAAGTGATTTAGTTAACTTTGCCAAGAACCTGAGATATCCTAGTTCAACTCCTTTCTTTAGTGATGTGATGCCTGTTTTACCCATTTCAGGTAGACATGGCTGCACTGAAGCAAATGGGGGACCGTGACCTGAAGGAATTGGGGATACCAATGGTACGTGTTGTTTCAGTCACCTTATTTGGAGGATCACACTGTTCACAAATTCTACTGCAAGTTCATATATGCTAATTTTGCTATGCATGGTGACACCTATTCACTTCCCTGAAAATAATGGGATATTATCTCGTTGGGGTGGGAAGAAGGCTAAGCTTCTCTTGATTATACTGAACTGTTGGATAGTTGCTACGCTTGTCCCATTTTAGCCTCTAATTGTTGCATTCTGGGGATTTGCAGGGACCCAGGAAGAAGATTCTCTTGGCTATGCTTTCCCAAACTTAGAAGACCTGTGTAGTATGGTAGTTATATTTATTCAATTCAATGCT--CCT-GT-TTCTAAGCTGAAGTTATCAAGCTGGCTGTTCTTGGGAAATGTATATAAAGGGTAGCGGTATAATGCTGGAGTATTTGGCTGATATTTGTTGTATAATAGACAGTATATAACAGTGAAATTATCTCTTTCGTTTTTGGGAGAGGC</genome_strand>
        <mrna_strand>GCAGATTGAAGAAAGAAAAAGGGAGCAGCATAAGAGGATGACAAGAAGTG-TCAATCTGCAGAACAATCTCACAGGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAAATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGGTGGTGTTAGACTAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAACTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCATCAGTAAGGCCAGCTGAAGCTTCAAGAATGGTTCATATGGCGGGAAATGACCTCATCGACTCTTCTCAGCTAAAAGTCCTTAACCCTGTGACCATGAGGTCAGCACTGGCTGCCAGGAATCCATTGACAGGTCTTCCCTCTGCAAATGGAAGCATGCTACAAAGCCCATATCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAACCTCCTGTGACCGTAGCCAGTCTATTAAATTCGCTCGGTTTGGGGAAGTACGCTATCCACTTTCAAGCCGAGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGACATGGCTGCACTGAAGCAAATGGGGGACCGTGACCTGAAGGAACTAGGGATACCAATG................................................................................................................................................................................................................................................GGACCCAGGAAGAAGATTCTACTGGCTATGCTTTCCCAAAC-TAGAAGGCCTGTGTAATATGGTAGTTTTATGTGTTCAATGCAATGCTCCCCTATTGTTTTTAGCTGAAGTTATCAAACTGGCTGTTCTTGGGAAATGTATATAAAGGGTAGCAGTAAAATGCTAGAGTATTGGAAGAATGTTTGTTGTATAAAAGACAGTATATAACAGTGAAATTATCTCTTTCGTTAAAAAAAAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E432332" ref_strand="-" ref_description="SGN-E432332 [STM-56-L10]">
      <seq>cagcagccaaccgtcgtcaggagctagcgattgcttcagatagaggcaattagatcctcctatacatcacaaactgctggtggtgtagaccaagatccccttatagacttgcaaacgattctaaagaactctcttcttcaaggaatatcactgcagctcagcatgtaccatcagtaaggccagctgaagcttcaagaatggttcatatggcgggaaatgacctcatcgactcttctcagctaaaagtccttacccctgtgaccatgaggtcaccactggctgccaggaatccattgacaggtcttccctctgcaaatggaagcatgctacaaagcccatatcctgatcaacctcctgtgaccgtagccagtctattaaattcgctcggtttggggaagtacgctatccactttcaagccgaggaggtagacatggctgcactgaagcaaatgggggaccgtgacctgaaggaactagggataccaatgggacccaggaagaagattctactggctatgctttcccaaactagaaggcctgtgtaatatggtagttttatgtgttcaatgcaatgctcctctattgtttttaagctgaagttatcaaactggctgttcttgggaaatgtatataaagggtagcggtaaaatgctcgagtattggaagaatgtttgttgtataaaagacagtatataacagtgaaattatctctttcgtttaaatgtttgttgtataaaagacggtatataagagtaaaattatctctttcgttcaaattggatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="47420" stop="43905"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47120" g_stop="46775" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46774" i_stop="45952" i_length="823">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45951" g_stop="45871" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="425" r_length="81" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45870" i_stop="44735" i_length="1136">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44734" g_stop="44672" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="488" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44671" i_stop="44432" i_length="240">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.925" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44431" g_stop="44209" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="715" r_length="227" r_score="0.865"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E432332" ref_strand="-">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E432332" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="47120" e_stop="46775"/>
          <exon e_start="45951" e_stop="45871"/>
          <exon e_start="44734" e_stop="44672"/>
          <exon e_start="44431" e_stop="44209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGCTGGTGTTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGCAGGATATGACCTCATCGACTCTTCTCAGCTAAAAGTCCTTACCCCTGTGACCATGAGGTCAGCACTGGGTGCCAGGAATCCATTGACAGGTCTTCCCTCTGCAAATGGAGGCATGCTACACAGACCATATCCTGTACGAACCTACTTATTGTTCATCTTACTGAATTTCTATCTTGAATCATTGCTGGTAGAATTCTTGTCTTATCTTGAACTGGATAACTGAAGTAGGTATTTTATGTGACATTCAAGATCATGAGCTCGGCTGTAACCTCTTTAGTATTTTATGTGACACTCAAGATCATGAGCTCGGCTGTAACCTCTTTAGTTGTTCTCCTTCTGGGGAACAACACAGACAGTGTTACTTAAACTAGCAGATCAGTTTTTACTCGAGATAGTTTTTCTGGCTCTACTCCACCCTGACATGCTTCCTGCTATTTTTTGTCAAGCCAAATTGTTGCCTATATTTTCTCTGTATGCTGGACTTTAGCACTGCTTATATTTAAAATGACAGATTGCTGATGGAAGTTAAATTACTATGGCATTGTTTGACCATGTTCAAGAATTGCCTTGGTTGCTAATGCTCATTGGAAATTTCTTTTGTCTGCGTTGTTTTACTATTATCTGTGTGATTTTCCTACAATTTTTTCTATTTCTCCTTCCTGCAACATAGCATTCTTTGCATTCCTTTGAATGATATTGAAATTTCAGGGAGTTATATTGAAAACTTTTATGTTTATTCATATGTCAATATTTCTGCATTGCTTGTCAACAAAGTCCAAATTAGTTGTTAGTTCTCACAATTAATGTCTTTCTCATAACACCATCTTTTCTTAGCTACTATGGATTTTTGTCTCATTTCCCTTTATGCCTGGTATGAAGGAGAAGGGAAGAAATATTTGTAAATGGACAGAATTTATATGAATATCTTAAACATTGTTCTATCTGGTGTTGTACAGGATCAACCTCCTTTGACCGTTGCCAGTCTATTAAATTCGCTCGGTTTGGGGAAATACACTATCCACTTTCAAGCCGAGGAGGTGAATAGTACTATTGTTAAATGATGAAGCACATGTTTTAGTTTTTATATCGTTTCTTTGTTATTACATTATCTCAGCATTATGAGCATTTTAAATATCAATTCTGGTACTGTGGCTGAAAAAGTCTCAAGGCTGAACTAGATTTCACTGCAAAAAGTAACAAGGTCATGGCATGTAGTTTCATGTTGAATAGAGAACCTTCTCGTCTTCACAATAAAAGGATTATTTTTTATGAGGAGCAAGATAAAATGGTACTTAATATTCTGCATTAAATCTTTTCTCCTGGTGTACTTGATTCCTATTGCACACATATATACAGTTAGCAGGCTGCTCATTATTTAGAGAAGTACCTTCTGTTATGTGGTGCGGTGGCGGAGGAGCCAGGAATTCAAAGAAAGTTCTTTTGCCATAGAGATTCAACAGCTCAAATATATACAAAAAAATGGTTCTTCCCTATCTACAGTGTAGTTTTTCAATGGAGGGGGTTCAATTGATTCCCCTTGCACCCTGGTGTGATGAATATGTTATGTGACAAATCTTCTAATAGTTGGTTAGATTTACGTGTTCGAACCCAAATCAATCTTTGAAGTTTCTTCGTTTGTCTGCATCACAAATTAATTATGTCACATGTTACTTATCCCATGACATTTCCTATTTAGTCCATTTGATCTACCTCTTTGTCTGTCCTCCCAACTAATCAACTTGTTAATAGATACATTACGGGCCTTTCAAATTCTTTACATAAATGTCTTTTGTTGTTTATAATGCCTCCTGAGGTATTATTTGTCACCTCGAAGCCCTTCATCTCTTCTGTTGTCCTCCTGTCTGATCATGTGCTCATCTTGGACTTCTAATATGAGATTATTACTTGTGTAAAGGATAGTAGCCTCACTGCTGTTCACAAATTGAAAGTTGCACCATTGGCCCATAACATTCTCAATCATCCTGTATTTTCCCCATCCATGTCCTTAGTGACACGGTTCAACTGAATAATCAGCCCATCTCTTTTATCTGTTTGTTCACGTGCCTCGCTTAATGTTTTTGATTAAGTGATTTAGTTAACTTTGCCAAGAACCTGAGATATCCTAGTTCAACTCCTTTCTTTAGTGATGTGATGCCTGTTTTACCCATTTCAGGTAGACATGGCTGCACTGAAGCAAATGGGGGACCGTGACCTGAAGGAATTGGGGATACCAATGGTACGTGTTGTTTCAGTCACCTTATTTGGAGGATCACACTGTTCACAAATTCTACTGCAAGTTCATATATGCTAATTTTGCTATGCATGGTGACACCTATTCACTTCCCTGAAAATAATGGGATATTATCTCGTTGGGGTGGGAAGAAGGCTAAGCTTCTCTTGATTATACTGAACTGTTGGATAGTTGCTACGCTTGTCCCATTTTAGCCTCTAATTGTTGCATTCTGGGGATTTGCAGGGACCCAGGAAGAAGATTCTCTTGGCTATGCTTTCCCAAACTTAGAAGACCTGTGTAGTATGGTAGTTATATTTATTCAATTCAATGCT-C-C---TGTTTCTAAGCTGAAGTTATCAAGCTGGCTGTTCTTGGGAAATGTATATAAAGGGTAGCGGTATAATGCTGGAGTATTTGGCTGATATTTGTTGTATAATAGACAGTATATAACAGTGAAATTATCTCTTTC</genome_strand>
        <mrna_strand>CAGCAGCCAACCGTCGTCAGGAGCTAGCG-ATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGGTGGTG-TAGACCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAACTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCATCAGTAAGGCCAGCTGAAGCTTCAAGAATGGTTCATATGGCGGGAAATGACCTCATCGACTCTTCTCAGCTAAAAGTCCTTACCCCTGTGACCATGAGGTCACCACTGGCTGCCAGGAATCCATTGACAGGTCTTCCCTCTGCAAATGGAAGCATGCTACAAAGCCCATATCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAACCTCCTGTGACCGTAGCCAGTCTATTAAATTCGCTCGGTTTGGGGAAGTACGCTATCCACTTTCAAGCCGAGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGACATGGCTGCACTGAAGCAAATGGGGGACCGTGACCTGAAGGAACTAGGGATACCAATG................................................................................................................................................................................................................................................GGACCCAGGAAGAAGATTCTACTGGCTATGCTTTCCCAAAC-TAGAAGGCCTGTGTAATATGGTAGTTTTATGTGTTCAATGCAATGCTCCTCTATTGTTTTTAAGCTGAAGTTATCAAACTGGCTGTTCTTGGGAAATGTATATAAAGGGTAGCGGTAAAATGCTCGAGTATTGGAAGAATGTTTGTTGTATAAAAGACAGTATATAACAGTGAAATTATCTCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E401940" ref_strand="+" ref_description="SGN-E401940 [PPC-5-F12]">
      <seq>ggaaaaatgacctccgactgaaactaacgcacagaagaaggcaaatggaaattcttctgcagattgaagaaagaaaaagggagcagcataagaggatgacaagaagtgttcaatctgcagaacaatctcacaggaggcttgtcaccagcagccaaccgtcgtcaggagctagcgaattgcttcaaatagaggcaattagatcctcctatacatcacaaactgctggtggtgttagactaagatccccttatagacttgcaaacgattctaaagaactctcttcttcaaggaatatcactgcagctcagcatgtaccatcagtaaggccagctgaagcttcaagaatggttcatatggcgggaaatgacctcatcgactcttctcagctaaaagtccttaaccctgtgaccatgaggtcagcactggctgccaggaatccattgacaggtcttccctctgcaaatggaagcatgctacaaagcccatatcctgatcaacctcctgtgaccgtagccagtctattaaattcgctcggtttggggaagtacgctatccactttcaagccgaggaggtagacatggctgcactgaagcaaatgggggaccgtgacctgaaggaactagggataccaatgggacccangaagaagattctactggctatgctttcccaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="47565" stop="44090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47265" g_stop="46775" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="491" r_length="491" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46774" i_stop="45952" i_length="823">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45951" g_stop="45871" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="572" r_length="81" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45870" i_stop="44735" i_length="1136">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44734" g_stop="44672" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="635" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44671" i_stop="44432" i_length="240">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.925" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44431" g_stop="44390" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="677" r_length="42" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E401940" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E401940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47265" e_stop="46775"/>
          <exon e_start="45951" e_stop="45871"/>
          <exon e_start="44734" e_stop="44672"/>
          <exon e_start="44431" e_stop="44390"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAAGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGCTGGTGTTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGCAGGATATGACCTCATCGACTCTTCTCAGCTAAAAGTCCTTACCCCTGTGACCATGAGGTCAGCACTGGGTGCCAGGAATCCATTGACAGGTCTTCCCTCTGCAAATGGAGGCATGCTACACAGACCATATCCTGTACGAACCTACTTATTGTTCATCTTACTGAATTTCTATCTTGAATCATTGCTGGTAGAATTCTTGTCTTATCTTGAACTGGATAACTGAAGTAGGTATTTTATGTGACATTCAAGATCATGAGCTCGGCTGTAACCTCTTTAGTATTTTATGTGACACTCAAGATCATGAGCTCGGCTGTAACCTCTTTAGTTGTTCTCCTTCTGGGGAACAACACAGACAGTGTTACTTAAACTAGCAGATCAGTTTTTACTCGAGATAGTTTTTCTGGCTCTACTCCACCCTGACATGCTTCCTGCTATTTTTTGTCAAGCCAAATTGTTGCCTATATTTTCTCTGTATGCTGGACTTTAGCACTGCTTATATTTAAAATGACAGATTGCTGATGGAAGTTAAATTACTATGGCATTGTTTGACCATGTTCAAGAATTGCCTTGGTTGCTAATGCTCATTGGAAATTTCTTTTGTCTGCGTTGTTTTACTATTATCTGTGTGATTTTCCTACAATTTTTTCTATTTCTCCTTCCTGCAACATAGCATTCTTTGCATTCCTTTGAATGATATTGAAATTTCAGGGAGTTATATTGAAAACTTTTATGTTTATTCATATGTCAATATTTCTGCATTGCTTGTCAACAAAGTCCAAATTAGTTGTTAGTTCTCACAATTAATGTCTTTCTCATAACACCATCTTTTCTTAGCTACTATGGATTTTTGTCTCATTTCCCTTTATGCCTGGTATGAAGGAGAAGGGAAGAAATATTTGTAAATGGACAGAATTTATATGAATATCTTAAACATTGTTCTATCTGGTGTTGTACAGGATCAACCTCCTTTGACCGTTGCCAGTCTATTAAATTCGCTCGGTTTGGGGAAATACACTATCCACTTTCAAGCCGAGGAGGTGAATAGTACTATTGTTAAATGATGAAGCACATGTTTTAGTTTTTATATCGTTTCTTTGTTATTACATTATCTCAGCATTATGAGCATTTTAAATATCAATTCTGGTACTGTGGCTGAAAAAGTCTCAAGGCTGAACTAGATTTCACTGCAAAAAGTAACAAGGTCATGGCATGTAGTTTCATGTTGAATAGAGAACCTTCTCGTCTTCACAATAAAAGGATTATTTTTTATGAGGAGCAAGATAAAATGGTACTTAATATTCTGCATTAAATCTTTTCTCCTGGTGTACTTGATTCCTATTGCACACATATATACAGTTAGCAGGCTGCTCATTATTTAGAGAAGTACCTTCTGTTATGTGGTGCGGTGGCGGAGGAGCCAGGAATTCAAAGAAAGTTCTTTTGCCATAGAGATTCAACAGCTCAAATATATACAAAAAAATGGTTCTTCCCTATCTACAGTGTAGTTTTTCAATGGAGGGGGTTCAATTGATTCCCCTTGCACCCTGGTGTGATGAATATGTTATGTGACAAATCTTCTAATAGTTGGTTAGATTTACGTGTTCGAACCCAAATCAATCTTTGAAGTTTCTTCGTTTGTCTGCATCACAAATTAATTATGTCACATGTTACTTATCCCATGACATTTCCTATTTAGTCCATTTGATCTACCTCTTTGTCTGTCCTCCCAACTAATCAACTTGTTAATAGATACATTACGGGCCTTTCAAATTCTTTACATAAATGTCTTTTGTTGTTTATAATGCCTCCTGAGGTATTATTTGTCACCTCGAAGCCCTTCATCTCTTCTGTTGTCCTCCTGTCTGATCATGTGCTCATCTTGGACTTCTAATATGAGATTATTACTTGTGTAAAGGATAGTAGCCTCACTGCTGTTCACAAATTGAAAGTTGCACCATTGGCCCATAACATTCTCAATCATCCTGTATTTTCCCCATCCATGTCCTTAGTGACACGGTTCAACTGAATAATCAGCCCATCTCTTTTATCTGTTTGTTCACGTGCCTCGCTTAATGTTTTTGATTAAGTGATTTAGTTAACTTTGCCAAGAACCTGAGATATCCTAGTTCAACTCCTTTCTTTAGTGATGTGATGCCTGTTTTACCCATTTCAGGTAGACATGGCTGCACTGAAGCAAATGGGGGACCGTGACCTGAAGGAATTGGGGATACCAATGGTACGTGTTGTTTCAGTCACCTTATTTGGAGGATCACACTGTTCACAAATTCTACTGCAAGTTCATATATGCTAATTTTGCTATGCATGGTGACACCTATTCACTTCCCTGAAAATAATGGGATATTATCTCGTTGGGGTGGGAAGAAGGCTAAGCTTCTCTTGATTATACTGAACTGTTGGATAGTTGCTACGCTTGTCCCATTTTAGCCTCTAATTGTTGCATTCTGGGGATTTGCAGGGACCCAGGAAGAAGATTCTCTTGGCTATGCTTTCCCAAACT</genome_strand>
        <mrna_strand>GGAAAAATGACCTCCGACTGAAACTAACGCACAGAAGAAGGCAAATGGAAATTCTTCTGCAGATTGAAGAAAGAAAAAGGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAGGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAAATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGGTGGTGTTAGACTAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAACTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCATCAGTAAGGCCAGCTGAAGCTTCAAGAATGGTTCATATGGCGGGAAATGACCTCATCGACTCTTCTCAGCTAAAAGTCCTTAACCCTGTGACCATGAGGTCAGCACTGGCTGCCAGGAATCCATTGACAGGTCTTCCCTCTGCAAATGGAAGCATGCTACAAAGCCCATATCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAACCTCCTGTGACCGTAGCCAGTCTATTAAATTCGCTCGGTTTGGGGAAGTACGCTATCCACTTTCAAGCCGAGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGACATGGCTGCACTGAAGCAAATGGGGGACCGTGACCTGAAGGAACTAGGGATACCAATG................................................................................................................................................................................................................................................GGACCCANGAAGAAGATTCTACTGGCTATGCTTTCCCAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E432638" ref_strand="+" ref_description="SGN-E432638 [STM-57-G20]">
      <seq>ggaaaaatgacctccgactgaaactaacgcacagaagaaggcaaatggaaattcttctgcagattgaagaaagaaaaagggagcagcataagaggatgacaagaagtgttcaatctgcagaacaatctcacaggaggcttgtcaccagcagccaaccgtcgtcaggagctagcgaattgcttcaaatagaggcaattagatcctcctatacatcacaaactgctggtggtgttagactaagatccccttatagacttgcaaacgattctaaagaactctcttcttcaaggaatatcactgcagctcagcatgtaccatcagtaaggccagctgaagcttcaagaatggttcatatggcgggaaatgacctcatcgactcttctcagctaaaagtccttaaccctgtgaccatgaggtcagcactggctgccaggaatccattgacaggtcttccctctgcaaatggaagcatgctacaaagcccatatcctgatcaacctcctgtgaccgtagccagtctattaaattcgctcggtttggggaagtacgctatccactttcaagccgaggaggtagacatggctgcactgaagcaaatgggggaccgtgacctgaaggaactagggataccaatgggacccaggaagaagattctactggctatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="47565" stop="44101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47265" g_stop="46775" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="491" r_length="491" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46774" i_stop="45952" i_length="823">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45951" g_stop="45871" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="572" r_length="81" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45870" i_stop="44735" i_length="1136">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44734" g_stop="44672" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="635" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44671" i_stop="44432" i_length="240">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.925" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44431" g_stop="44401" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="666" r_length="31" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E432638" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E432638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47265" e_stop="46775"/>
          <exon e_start="45951" e_stop="45871"/>
          <exon e_start="44734" e_stop="44672"/>
          <exon e_start="44431" e_stop="44401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAAGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGCTGGTGTTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGCAGGATATGACCTCATCGACTCTTCTCAGCTAAAAGTCCTTACCCCTGTGACCATGAGGTCAGCACTGGGTGCCAGGAATCCATTGACAGGTCTTCCCTCTGCAAATGGAGGCATGCTACACAGACCATATCCTGTACGAACCTACTTATTGTTCATCTTACTGAATTTCTATCTTGAATCATTGCTGGTAGAATTCTTGTCTTATCTTGAACTGGATAACTGAAGTAGGTATTTTATGTGACATTCAAGATCATGAGCTCGGCTGTAACCTCTTTAGTATTTTATGTGACACTCAAGATCATGAGCTCGGCTGTAACCTCTTTAGTTGTTCTCCTTCTGGGGAACAACACAGACAGTGTTACTTAAACTAGCAGATCAGTTTTTACTCGAGATAGTTTTTCTGGCTCTACTCCACCCTGACATGCTTCCTGCTATTTTTTGTCAAGCCAAATTGTTGCCTATATTTTCTCTGTATGCTGGACTTTAGCACTGCTTATATTTAAAATGACAGATTGCTGATGGAAGTTAAATTACTATGGCATTGTTTGACCATGTTCAAGAATTGCCTTGGTTGCTAATGCTCATTGGAAATTTCTTTTGTCTGCGTTGTTTTACTATTATCTGTGTGATTTTCCTACAATTTTTTCTATTTCTCCTTCCTGCAACATAGCATTCTTTGCATTCCTTTGAATGATATTGAAATTTCAGGGAGTTATATTGAAAACTTTTATGTTTATTCATATGTCAATATTTCTGCATTGCTTGTCAACAAAGTCCAAATTAGTTGTTAGTTCTCACAATTAATGTCTTTCTCATAACACCATCTTTTCTTAGCTACTATGGATTTTTGTCTCATTTCCCTTTATGCCTGGTATGAAGGAGAAGGGAAGAAATATTTGTAAATGGACAGAATTTATATGAATATCTTAAACATTGTTCTATCTGGTGTTGTACAGGATCAACCTCCTTTGACCGTTGCCAGTCTATTAAATTCGCTCGGTTTGGGGAAATACACTATCCACTTTCAAGCCGAGGAGGTGAATAGTACTATTGTTAAATGATGAAGCACATGTTTTAGTTTTTATATCGTTTCTTTGTTATTACATTATCTCAGCATTATGAGCATTTTAAATATCAATTCTGGTACTGTGGCTGAAAAAGTCTCAAGGCTGAACTAGATTTCACTGCAAAAAGTAACAAGGTCATGGCATGTAGTTTCATGTTGAATAGAGAACCTTCTCGTCTTCACAATAAAAGGATTATTTTTTATGAGGAGCAAGATAAAATGGTACTTAATATTCTGCATTAAATCTTTTCTCCTGGTGTACTTGATTCCTATTGCACACATATATACAGTTAGCAGGCTGCTCATTATTTAGAGAAGTACCTTCTGTTATGTGGTGCGGTGGCGGAGGAGCCAGGAATTCAAAGAAAGTTCTTTTGCCATAGAGATTCAACAGCTCAAATATATACAAAAAAATGGTTCTTCCCTATCTACAGTGTAGTTTTTCAATGGAGGGGGTTCAATTGATTCCCCTTGCACCCTGGTGTGATGAATATGTTATGTGACAAATCTTCTAATAGTTGGTTAGATTTACGTGTTCGAACCCAAATCAATCTTTGAAGTTTCTTCGTTTGTCTGCATCACAAATTAATTATGTCACATGTTACTTATCCCATGACATTTCCTATTTAGTCCATTTGATCTACCTCTTTGTCTGTCCTCCCAACTAATCAACTTGTTAATAGATACATTACGGGCCTTTCAAATTCTTTACATAAATGTCTTTTGTTGTTTATAATGCCTCCTGAGGTATTATTTGTCACCTCGAAGCCCTTCATCTCTTCTGTTGTCCTCCTGTCTGATCATGTGCTCATCTTGGACTTCTAATATGAGATTATTACTTGTGTAAAGGATAGTAGCCTCACTGCTGTTCACAAATTGAAAGTTGCACCATTGGCCCATAACATTCTCAATCATCCTGTATTTTCCCCATCCATGTCCTTAGTGACACGGTTCAACTGAATAATCAGCCCATCTCTTTTATCTGTTTGTTCACGTGCCTCGCTTAATGTTTTTGATTAAGTGATTTAGTTAACTTTGCCAAGAACCTGAGATATCCTAGTTCAACTCCTTTCTTTAGTGATGTGATGCCTGTTTTACCCATTTCAGGTAGACATGGCTGCACTGAAGCAAATGGGGGACCGTGACCTGAAGGAATTGGGGATACCAATGGTACGTGTTGTTTCAGTCACCTTATTTGGAGGATCACACTGTTCACAAATTCTACTGCAAGTTCATATATGCTAATTTTGCTATGCATGGTGACACCTATTCACTTCCCTGAAAATAATGGGATATTATCTCGTTGGGGTGGGAAGAAGGCTAAGCTTCTCTTGATTATACTGAACTGTTGGATAGTTGCTACGCTTGTCCCATTTTAGCCTCTAATTGTTGCATTCTGGGGATTTGCAGGGACCCAGGAAGAAGATTCTCTTGGCTATGC</genome_strand>
        <mrna_strand>GGAAAAATGACCTCCGACTGAAACTAACGCACAGAAGAAGGCAAATGGAAATTCTTCTGCAGATTGAAGAAAGAAAAAGGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAGGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAAATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGGTGGTGTTAGACTAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAACTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCATCAGTAAGGCCAGCTGAAGCTTCAAGAATGGTTCATATGGCGGGAAATGACCTCATCGACTCTTCTCAGCTAAAAGTCCTTAACCCTGTGACCATGAGGTCAGCACTGGCTGCCAGGAATCCATTGACAGGTCTTCCCTCTGCAAATGGAAGCATGCTACAAAGCCCATATCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAACCTCCTGTGACCGTAGCCAGTCTATTAAATTCGCTCGGTTTGGGGAAGTACGCTATCCACTTTCAAGCCGAGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGACATGGCTGCACTGAAGCAAATGGGGGACCGTGACCTGAAGGAACTAGGGATACCAATG................................................................................................................................................................................................................................................GGACCCAGGAAGAAGATTCTACTGGCTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E374383" ref_strand="+" ref_description="SGN-E374383 [TUS-33-J22]">
      <seq>taaaggtgcacgcattgggaaaaatgacctccgactgaaactaatgcacagaagaaggcaaagggaaattcatctgcagattgaagaaagaaaaaaggagcagcataagaggatgacaagaagtgttcaatctgcagaacaatctcacaagaggcttgtcaccagcagccaaccgtcgtcaggagctagcgaattgcttcagatagaggcaattagatcctcctatacatcacaaactgctgctagtgttagatcaagatccccttatagacttgcaaacgattctaaagaagtctcttcttcaaggaatatcactgcagctcagcatgtaccgtcagtaaggccagccgaagcttcaagaatggttcatatggcaggatatgacctcatcgactcttctcagctaaaagtccttacccctgtgaccatgaggtcagcactgggtgccaggaatccattgacaggtcttccctctgcaaatggaggcatgctacacagaccatatcctgatcaacctcctttgaccgttgccagtctattaaattcgctcggtttggggaaatacactatccactttcaagccgaggaggtagacatggctgcactgaagcaaatgggggaccgtgacctgaangaattggggataccaatgggaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="47582" stop="44368"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47282" g_stop="46775" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="508" r_length="508" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46774" i_stop="45952" i_length="823">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45951" g_stop="45871" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="589" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45870" i_stop="44735" i_length="1136">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44734" g_stop="44672" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="652" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44671" i_stop="44432" i_length="240">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.925" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44431" g_stop="44426" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="658" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E374383" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47282" e_stop="46775"/>
          <exon e_start="45951" e_stop="45871"/>
          <exon e_start="44734" e_stop="44672"/>
          <exon e_start="44431" e_stop="44426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGGTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAAGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGCTGGTGTTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGCAGGATATGACCTCATCGACTCTTCTCAGCTAAAAGTCCTTACCCCTGTGACCATGAGGTCAGCACTGGGTGCCAGGAATCCATTGACAGGTCTTCCCTCTGCAAATGGAGGCATGCTACACAGACCATATCCTGTACGAACCTACTTATTGTTCATCTTACTGAATTTCTATCTTGAATCATTGCTGGTAGAATTCTTGTCTTATCTTGAACTGGATAACTGAAGTAGGTATTTTATGTGACATTCAAGATCATGAGCTCGGCTGTAACCTCTTTAGTATTTTATGTGACACTCAAGATCATGAGCTCGGCTGTAACCTCTTTAGTTGTTCTCCTTCTGGGGAACAACACAGACAGTGTTACTTAAACTAGCAGATCAGTTTTTACTCGAGATAGTTTTTCTGGCTCTACTCCACCCTGACATGCTTCCTGCTATTTTTTGTCAAGCCAAATTGTTGCCTATATTTTCTCTGTATGCTGGACTTTAGCACTGCTTATATTTAAAATGACAGATTGCTGATGGAAGTTAAATTACTATGGCATTGTTTGACCATGTTCAAGAATTGCCTTGGTTGCTAATGCTCATTGGAAATTTCTTTTGTCTGCGTTGTTTTACTATTATCTGTGTGATTTTCCTACAATTTTTTCTATTTCTCCTTCCTGCAACATAGCATTCTTTGCATTCCTTTGAATGATATTGAAATTTCAGGGAGTTATATTGAAAACTTTTATGTTTATTCATATGTCAATATTTCTGCATTGCTTGTCAACAAAGTCCAAATTAGTTGTTAGTTCTCACAATTAATGTCTTTCTCATAACACCATCTTTTCTTAGCTACTATGGATTTTTGTCTCATTTCCCTTTATGCCTGGTATGAAGGAGAAGGGAAGAAATATTTGTAAATGGACAGAATTTATATGAATATCTTAAACATTGTTCTATCTGGTGTTGTACAGGATCAACCTCCTTTGACCGTTGCCAGTCTATTAAATTCGCTCGGTTTGGGGAAATACACTATCCACTTTCAAGCCGAGGAGGTGAATAGTACTATTGTTAAATGATGAAGCACATGTTTTAGTTTTTATATCGTTTCTTTGTTATTACATTATCTCAGCATTATGAGCATTTTAAATATCAATTCTGGTACTGTGGCTGAAAAAGTCTCAAGGCTGAACTAGATTTCACTGCAAAAAGTAACAAGGTCATGGCATGTAGTTTCATGTTGAATAGAGAACCTTCTCGTCTTCACAATAAAAGGATTATTTTTTATGAGGAGCAAGATAAAATGGTACTTAATATTCTGCATTAAATCTTTTCTCCTGGTGTACTTGATTCCTATTGCACACATATATACAGTTAGCAGGCTGCTCATTATTTAGAGAAGTACCTTCTGTTATGTGGTGCGGTGGCGGAGGAGCCAGGAATTCAAAGAAAGTTCTTTTGCCATAGAGATTCAACAGCTCAAATATATACAAAAAAATGGTTCTTCCCTATCTACAGTGTAGTTTTTCAATGGAGGGGGTTCAATTGATTCCCCTTGCACCCTGGTGTGATGAATATGTTATGTGACAAATCTTCTAATAGTTGGTTAGATTTACGTGTTCGAACCCAAATCAATCTTTGAAGTTTCTTCGTTTGTCTGCATCACAAATTAATTATGTCACATGTTACTTATCCCATGACATTTCCTATTTAGTCCATTTGATCTACCTCTTTGTCTGTCCTCCCAACTAATCAACTTGTTAATAGATACATTACGGGCCTTTCAAATTCTTTACATAAATGTCTTTTGTTGTTTATAATGCCTCCTGAGGTATTATTTGTCACCTCGAAGCCCTTCATCTCTTCTGTTGTCCTCCTGTCTGATCATGTGCTCATCTTGGACTTCTAATATGAGATTATTACTTGTGTAAAGGATAGTAGCCTCACTGCTGTTCACAAATTGAAAGTTGCACCATTGGCCCATAACATTCTCAATCATCCTGTATTTTCCCCATCCATGTCCTTAGTGACACGGTTCAACTGAATAATCAGCCCATCTCTTTTATCTGTTTGTTCACGTGCCTCGCTTAATGTTTTTGATTAAGTGATTTAGTTAACTTTGCCAAGAACCTGAGATATCCTAGTTCAACTCCTTTCTTTAGTGATGTGATGCCTGTTTTACCCATTTCAGGTAGACATGGCTGCACTGAAGCAAATGGGGGACCGTGACCTGAAGGAATTGGGGATACCAATGGTACGTGTTGTTTCAGTCACCTTATTTGGAGGATCACACTGTTCACAAATTCTACTGCAAGTTCATATATGCTAATTTTGCTATGCATGGTGACACCTATTCACTTCCCTGAAAATAATGGGATATTATCTCGTTGGGGTGGGAAGAAGGCTAAGCTTCTCTTGATTATACTGAACTGTTGGATAGTTGCTACGCTTGTCCCATTTTAGCCTCTAATTGTTGCATTCTGGGGATTTGCAGGGACCC</genome_strand>
        <mrna_strand>TAAAGGTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAAGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGCTAGTGTTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGCAGGATATGACCTCATCGACTCTTCTCAGCTAAAAGTCCTTACCCCTGTGACCATGAGGTCAGCACTGGGTGCCAGGAATCCATTGACAGGTCTTCCCTCTGCAAATGGAGGCATGCTACACAGACCATATCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAACCTCCTTTGACCGTTGCCAGTCTATTAAATTCGCTCGGTTTGGGGAAATACACTATCCACTTTCAAGCCGAGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGACATGGCTGCACTGAAGCAAATGGGGGACCGTGACCTGAANGAATTGGGGATACCAATG................................................................................................................................................................................................................................................GGACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726390" ref_strand="+" ref_description="SGN-E726390 [LA11CG02]">
      <seq>ccagatttagctgtgcataagttttgaccatctcaaatgtcaaggccacaggtcaccatcactttgggacgctcgggtcaaaaagtggttaagcgatcatcagcttctcagggtaatggttttagtcaacagacattgtcaagaggcaaaaggtcattaggagagacctataggactgactctgaggatcctacaaaatcccttcgtaaacgtgtgcgaggggataaagatgcaggaggttccagatatggcagacagaatggtgcacgcattgggaaaaatgacctccgactgaaactaatgcacagaagaaggcaaagggaaattcatctgcagattgaagaaagaaaaaaggagcagcataagaggatgacaagaagtgttcaatctgcagaacaatctcacaagaggcttgtcaccagcagccaaccgtcgtcaggagctagcgaattgcttcagatagaggcaattagatcctcctatacatcacaaactgctgctggtgttagatcaagatccccttatagacttgcaaacgattctaaagaagtctcttcttcaaggaatatcactgcagctcagcatgtaccgtcagtaaggccagccgaagcttcaagaatggttcatatggcaggatatgacctcatcgactcttctcagctaaaagtccttacccctgtgaccatgaggtcagcactgggtgccaggaatccattgacaggtcttccctctgcaaatggaggcatgctacacagaccatatcctngatcacctcctttgaccgttgccagtctattaaattcgctcggtttggggaaatacactatccactttncagccgaggagtagacatggctgcactgaaagcaatgggggaccgtgacctgaaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="48212" stop="44387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48008" g_stop="48005" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48004" i_stop="47910" i_length="95">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47909" g_stop="47833" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="81" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47832" i_stop="47735" i_length="98">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47734" g_stop="47604" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="212" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47603" i_stop="47448" i_length="156">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47447" g_stop="47398" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="262" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47397" i_stop="47278" i_length="120">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47277" g_stop="46775" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="765" r_length="503" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="46774" i_stop="45952" i_length="823">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45951" g_stop="45871" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="766" r_stop="845" r_length="80" r_score="0.926"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="45870" i_stop="44735" i_length="1136">
            <donor d_prob="0.971" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="44734" g_stop="44687" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="846" r_stop="893" r_length="48" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E726390" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>894</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48008" e_stop="48005"/>
          <exon e_start="47909" e_stop="47833"/>
          <exon e_start="47734" e_stop="47604"/>
          <exon e_start="47447" e_stop="47398"/>
          <exon e_start="47277" e_stop="46775"/>
          <exon e_start="45951" e_stop="45871"/>
          <exon e_start="44734" e_stop="44687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGGTAGGTATCTCATTCTCTTTCACCTCCCATTTTTTAGGGTTCCTTCATTTCTATTGACTATCGATTGTTGCATCTTGTTGCTGCAATCCTTTCAGATTTAGCTGTGCATAAGTTTTGACCATCTCAAATGTCAAGGCCACAGGTCACCATCACTTTGGGACGCTCGGGTCAAGTAAGCTTTCTCCACTGTTTTTCGCTTTATGGATCTGTTTGGAGGTTTCTTAATTGTGGGTTCAATTTTTTCTTAATTTGTTACTGTTAAACTTGCAGAAAGTGGTTAAGCGATCATCAGCTTCTCAGGGTAATGGTTTTAGTCAACAGACATTGTCAAGAGGCAAAAGGTCATTAGGAGAGACCTATAGGACTGACTCTGAGGATCCTACAAAATCCCTTCGTAAACGGTAAAATCTTTTGTTTGTTGTTCTGGTTGAGCTAATGTAGGTTGTATCTAATTTATTGTTTTCAGAATAATGGAAGGAATATAAAAAAACTATCAAAGTTAGAGTGGTAGTTTTGATTTTATTTGATAGTGGAAGTTTTGCTATTGTTTTTGCAAGTGTGCGAGGGGATAAAGATGCAGGAGGTTCCAGATATGGCAGACAGAATGGTATTATCTGAAATATTTGTCATTACATGTTGTTTTGTTTTTTGGATGATTCCAGTTTCCTGTGTCATTCTTTGGTCTAGCATATTAGCTCATGTTTGGTACTGTTACTGTGATGTAAAGGTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAAGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGCTGGTGTTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGCAGGATATGACCTCATCGACTCTTCTCAGCTAAAAGTCCTTACCCCTGTGACCATGAGGTCAGCACTGGGTGCCAGGAATCCATTGACAGGTCTTCCCTCTGCAAATGGAGGCATGCTACACAGACCATATCCTGTACGAACCTACTTATTGTTCATCTTACTGAATTTCTATCTTGAATCATTGCTGGTAGAATTCTTGTCTTATCTTGAACTGGATAACTGAAGTAGGTATTTTATGTGACATTCAAGATCATGAGCTCGGCTGTAACCTCTTTAGTATTTTATGTGACACTCAAGATCATGAGCTCGGCTGTAACCTCTTTAGTTGTTCTCCTTCTGGGGAACAACACAGACAGTGTTACTTAAACTAGCAGATCAGTTTTTACTCGAGATAGTTTTTCTGGCTCTACTCCACCCTGACATGCTTCCTGCTATTTTTTGTCAAGCCAAATTGTTGCCTATATTTTCTCTGTATGCTGGACTTTAGCACTGCTTATATTTAAAATGACAGATTGCTGATGGAAGTTAAATTACTATGGCATTGTTTGACCATGTTCAAGAATTGCCTTGGTTGCTAATGCTCATTGGAAATTTCTTTTGTCTGCGTTGTTTTACTATTATCTGTGTGATTTTCCTACAATTTTTTCTATTTCTCCTTCCTGCAACATAGCATTCTTTGCATTCCTTTGAATGATATTGAAATTTCAGGGAGTTATATTGAAAACTTTTATGTTTATTCATATGTCAATATTTCTGCATTGCTTGTCAACAAAGTCCAAATTAGTTGTTAGTTCTCACAATTAATGTCTTTCTCATAACACCATCTTTTCTTAGCTACTATGGATTTTTGTCTCATTTCCCTTTATGCCTGGTATGAAGGAGAAGGGAAGAAATATTTGTAAATGGACAGAATTTATATGAATATCTTAAACATTGTTCTATCTGGTGTTGTACAG-GATCAACCTCCTTTGACCGTTGCCAGTCTATTAAATTCGCTCGGTTTGGGGAAATACACTATCCACTTTCAAGCCGAGGAGGTGAATAGTACTATTGTTAAATGATGAAGCACATGTTTTAGTTTTTATATCGTTTCTTTGTTATTACATTATCTCAGCATTATGAGCATTTTAAATATCAATTCTGGTACTGTGGCTGAAAAAGTCTCAAGGCTGAACTAGATTTCACTGCAAAAAGTAACAAGGTCATGGCATGTAGTTTCATGTTGAATAGAGAACCTTCTCGTCTTCACAATAAAAGGATTATTTTTTATGAGGAGCAAGATAAAATGGTACTTAATATTCTGCATTAAATCTTTTCTCCTGGTGTACTTGATTCCTATTGCACACATATATACAGTTAGCAGGCTGCTCATTATTTAGAGAAGTACCTTCTGTTATGTGGTGCGGTGGCGGAGGAGCCAGGAATTCAAAGAAAGTTCTTTTGCCATAGAGATTCAACAGCTCAAATATATACAAAAAAATGGTTCTTCCCTATCTACAGTGTAGTTTTTCAATGGAGGGGGTTCAATTGATTCCCCTTGCACCCTGGTGTGATGAATATGTTATGTGACAAATCTTCTAATAGTTGGTTAGATTTACGTGTTCGAACCCAAATCAATCTTTGAAGTTTCTTCGTTTGTCTGCATCACAAATTAATTATGTCACATGTTACTTATCCCATGACATTTCCTATTTAGTCCATTTGATCTACCTCTTTGTCTGTCCTCCCAACTAATCAACTTGTTAATAGATACATTACGGGCCTTTCAAATTCTTTACATAAATGTCTTTTGTTGTTTATAATGCCTCCTGAGGTATTATTTGTCACCTCGAAGCCCTTCATCTCTTCTGTTGTCCTCCTGTCTGATCATGTGCTCATCTTGGACTTCTAATATGAGATTATTACTTGTGTAAAGGATAGTAGCCTCACTGCTGTTCACAAATTGAAAGTTGCACCATTGGCCCATAACATTCTCAATCATCCTGTATTTTCCCCATCCATGTCCTTAGTGACACGGTTCAACTGAATAATCAGCCCATCTCTTTTATCTGTTTGTTCACGTGCCTCGCTTAATGTTTTTGATTAAGTGATTTAGTTAACTTTGCCAAGAACCTGAGATATCCTAGTTCAACTCCTTTCTTTAGTGATGTGATGCCTGTTTTACCCATTTCAGGTAGACATGGCTGCACTGAAGCAAATGGGGGACCGTGACCTGAAGGAA</genome_strand>
        <mrna_strand>CCAG...............................................................................................ATTTAGCTGTGCATAAGTTTTGACCATCTCAAATGTCAAGGCCACAGGTCACCATCACTTTGGGACGCTCGGGTCAA..................................................................................................AAAGTGGTTAAGCGATCATCAGCTTCTCAGGGTAATGGTTTTAGTCAACAGACATTGTCAAGAGGCAAAAGGTCATTAGGAGAGACCTATAGGACTGACTCTGAGGATCCTACAAAATCCCTTCGTAAACG............................................................................................................................................................TGTGCGAGGGGATAAAGATGCAGGAGGTTCCAGATATGGCAGACAGAATG........................................................................................................................GTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAAGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGCTGGTGTTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGCAGGATATGACCTCATCGACTCTTCTCAGCTAAAAGTCCTTACCCCTGTGACCATGAGGTCAGCACTGGGTGCCAGGAATCCATTGACAGGTCTTCCCTCTGCAAATGGAGGCATGCTACACAGACCATATCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................NGATC-ACCTCCTTTGACCGTTGCCAGTCTATTAAATTCGCTCGGTTTGGGGAAATACACTATCCACTTTNCAGCCGAGGA-................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGACATGGCTGCACTGAAAGCAATGGGGGACCGTGACCTGAAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E305694" ref_strand="+" ref_description="SGN-E305694 [cLEX-14-P8]">
      <seq>taaaggtgcacgcattgggaaaaatgacctccgactgaaactaatgcacagaagaaggcaaagggaaattcatctgcagattgaagaaagaaaaaaggagcagcataagaggatgacaagaagtgttcaatctgcagaacaatctcacaagaggcttgtcaccagcagccaaccgtcgtcaggagctagcgaattgcttcagatagaggcaattagatcctcctatacatcacaaactgctgctagtgttagatcaagatccccttatagacttgcaaacgattctaaagaagtctcttcttcaaggaatatcactgcagctcagcatgtaccgtcagtaaggccagccgaagcttcaagaatggttcatatggcaggatatgacctcatcgactcttctcagctaaaagtccttacccctgtgaccatgaggtcagcactgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="47582" stop="46538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47282" g_stop="46838" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="445" r_length="445" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E305694" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47282" e_stop="46838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGGTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAAGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGCTGGTGTTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGCAGGATATGACCTCATCGACTCTTCTCAGCTAAAAGTCCTTACCCCTGTGACCATGAGGTCAGCACTGGGT</genome_strand>
        <mrna_strand>TAAAGGTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAAGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGCTAGTGTTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGCAGGATATGACCTCATCGACTCTTCTCAGCTAAAAGTCCTTACCCCTGTGACCATGAGGTCAGCACTGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E729014" ref_strand="+" ref_description="SGN-E729014 [LA19CG09]">
      <seq>cttgctcgctgagttttggagtatagacatatggagtataaccagatttagctgtgcataagttttgaccatctcaaatgtcaaggccacaggtcaccatcactttgggacgctcgggtcaaaaagtggttaagcgatcatcagcttctcagggtaatggttttagtcaacagacattgtcaagaggcaaaaggtcattaggagagacctataggactgactctgaggatcctacaaaatcccttcgtaaacgtgtgcgaggggataaagatgcaggaggttccagatatggcagacagaatggtgcacgcattgggaaaaatgacctccgactgaaactaatgcacagaagaaggcaaagggaaattcatctgcagattgaagaaagaaaaaaggagcagcataagaggatgacaagaagtgttcaatctgcagaacaatctcacaagaggcttgtcaccagcagccaaccgtcgtcaggagctagcgaattgcttcagatagaggcaattagatcctcctatacatcacaaactgctgctggtgttagatcaagatccccttatagacttgcaaacgattctaaagaagtctcttcttcaaggaatatcactgcagctcagcatgtaccgtcagtaaggccagccgaagcttcaagaatgggtcatatggcaggatatgacctcatcgactcttctcagctaaaagtccttacccctgtgaccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="48349" stop="46553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48049" g_stop="48005" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48004" i_stop="47910" i_length="95">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47909" g_stop="47833" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="122" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47832" i_stop="47735" i_length="98">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47734" g_stop="47604" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="253" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47603" i_stop="47448" i_length="156">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47447" g_stop="47398" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="303" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47397" i_stop="47278" i_length="120">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47277" g_stop="46853" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="728" r_length="425" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E729014" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48049" e_stop="48005"/>
          <exon e_start="47909" e_stop="47833"/>
          <exon e_start="47734" e_stop="47604"/>
          <exon e_start="47447" e_stop="47398"/>
          <exon e_start="47277" e_stop="46853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCTCGCTGAGTTTTGGAGTATAGACATATGGAGTATAACCAGGTAGGTATCTCATTCTCTTTCACCTCCCATTTTTTAGGGTTCCTTCATTTCTATTGACTATCGATTGTTGCATCTTGTTGCTGCAATCCTTTCAGATTTAGCTGTGCATAAGTTTTGACCATCTCAAATGTCAAGGCCACAGGTCACCATCACTTTGGGACGCTCGGGTCAAGTAAGCTTTCTCCACTGTTTTTCGCTTTATGGATCTGTTTGGAGGTTTCTTAATTGTGGGTTCAATTTTTTCTTAATTTGTTACTGTTAAACTTGCAGAAAGTGGTTAAGCGATCATCAGCTTCTCAGGGTAATGGTTTTAGTCAACAGACATTGTCAAGAGGCAAAAGGTCATTAGGAGAGACCTATAGGACTGACTCTGAGGATCCTACAAAATCCCTTCGTAAACGGTAAAATCTTTTGTTTGTTGTTCTGGTTGAGCTAATGTAGGTTGTATCTAATTTATTGTTTTCAGAATAATGGAAGGAATATAAAAAAACTATCAAAGTTAGAGTGGTAGTTTTGATTTTATTTGATAGTGGAAGTTTTGCTATTGTTTTTGCAAGTGTGCGAGGGGATAAAGATGCAGGAGGTTCCAGATATGGCAGACAGAATGGTATTATCTGAAATATTTGTCATTACATGTTGTTTTGTTTTTTGGATGATTCCAGTTTCCTGTGTCATTCTTTGGTCTAGCATATTAGCTCATGTTTGGTACTGTTACTGTGATGTAAAGGTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAAGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGCTGGTGTTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGCAGGATATGACCTCATCGACTCTTCTCAGCTAAAAGTCCTTACCCCTGTGACCATG</genome_strand>
        <mrna_strand>CTTGCTCGCTGAGTTTTGGAGTATAGACATATGGAGTATAACCAG...............................................................................................ATTTAGCTGTGCATAAGTTTTGACCATCTCAAATGTCAAGGCCACAGGTCACCATCACTTTGGGACGCTCGGGTCAA..................................................................................................AAAGTGGTTAAGCGATCATCAGCTTCTCAGGGTAATGGTTTTAGTCAACAGACATTGTCAAGAGGCAAAAGGTCATTAGGAGAGACCTATAGGACTGACTCTGAGGATCCTACAAAATCCCTTCGTAAACG............................................................................................................................................................TGTGCGAGGGGATAAAGATGCAGGAGGTTCCAGATATGGCAGACAGAATG........................................................................................................................GTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAAGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGCTGGTGTTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGGTCATATGGCAGGATATGACCTCATCGACTCTTCTCAGCTAAAAGTCCTTACCCCTGTGACCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E549043" ref_strand="+" ref_description="SGN-E549043 [TUS-66-M11]">
      <seq>catatggagtataaccagatttagctgtgcataagttttgaccatctcaaatgtcaaggccacaggtcaccatcactttgggacgctcgggtcaaaaagtggttaagcgatcatcagcttctcagggtaatggttttagtcaacagacattgtcaagaggcaaaaggtcattaggagagacctataggactgactctgaggatcctacaaaatcccttcgtaaacggtaaaatcttttgtttgttgttctggttgagctaatgtaggttgtatctaatttattgttttcagaataatggaaggaatataaaaaaactatcaaagttagagtggtagttttgattttatttgatagtggaagttttgctattgtttttgcaagtgtgcgaggggataaagatgcaggaggttccagatatggcagacagaatggtgcacgcattgggaaaaatgacctccgactgaaactaatgcacagaagaaggcaaagggaaattcatctgcagattgaagaaagaaaaaaggagcagcataagaggatgacaagaagtgttcaatctgcagaacaatctcacaagaggcttgtcaccagcagccaaccgtcgtcaggagctagcgaattgcttcagatagaggcaattagatcctcctatacatcacaaactgctgctggtgttagatcaagatccccttatagacttgcaaacgattctaaagaagtctcttcttcaaggaatatcactgcagctcagcatgtaccgtcagtaaggccagccgaagcttcaagaatggttcatatggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="48322" stop="46608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48022" g_stop="48005" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48004" i_stop="47910" i_length="95">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47909" g_stop="47833" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="95" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47832" i_stop="47735" i_length="98">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47734" g_stop="47398" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="432" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47397" i_stop="47278" i_length="120">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47277" g_stop="46908" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="802" r_length="370" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E549043" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48022" e_stop="48005"/>
          <exon e_start="47909" e_stop="47833"/>
          <exon e_start="47734" e_stop="47398"/>
          <exon e_start="47277" e_stop="46908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATGGAGTATAACCAGGTAGGTATCTCATTCTCTTTCACCTCCCATTTTTTAGGGTTCCTTCATTTCTATTGACTATCGATTGTTGCATCTTGTTGCTGCAATCCTTTCAGATTTAGCTGTGCATAAGTTTTGACCATCTCAAATGTCAAGGCCACAGGTCACCATCACTTTGGGACGCTCGGGTCAAGTAAGCTTTCTCCACTGTTTTTCGCTTTATGGATCTGTTTGGAGGTTTCTTAATTGTGGGTTCAATTTTTTCTTAATTTGTTACTGTTAAACTTGCAGAAAGTGGTTAAGCGATCATCAGCTTCTCAGGGTAATGGTTTTAGTCAACAGACATTGTCAAGAGGCAAAAGGTCATTAGGAGAGACCTATAGGACTGACTCTGAGGATCCTACAAAATCCCTTCGTAAACGGTAAAATCTTTTGTTTGTTGTTCTGGTTGAGCTAATGTAGGTTGTATCTAATTTATTGTTTTCAGAATAATGGAAGGAATATAAAAAAACTATCAAAGTTAGAGTGGTAGTTTTGATTTTATTTGATAGTGGAAGTTTTGCTATTGTTTTTGCAAGTGTGCGAGGGGATAAAGATGCAGGAGGTTCCAGATATGGCAGACAGAATGGTATTATCTGAAATATTTGTCATTACATGTTGTTTTGTTTTTTGGATGATTCCAGTTTCCTGTGTCATTCTTTGGTCTAGCATATTAGCTCATGTTTGGTACTGTTACTGTGATGTAAAGGTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAAGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGCTGGTGTTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGC</genome_strand>
        <mrna_strand>CATATGGAGTATAACCAG...............................................................................................ATTTAGCTGTGCATAAGTTTTGACCATCTCAAATGTCAAGGCCACAGGTCACCATCACTTTGGGACGCTCGGGTCAA..................................................................................................AAAGTGGTTAAGCGATCATCAGCTTCTCAGGGTAATGGTTTTAGTCAACAGACATTGTCAAGAGGCAAAAGGTCATTAGGAGAGACCTATAGGACTGACTCTGAGGATCCTACAAAATCCCTTCGTAAACGGTAAAATCTTTTGTTTGTTGTTCTGGTTGAGCTAATGTAGGTTGTATCTAATTTATTGTTTTCAGAATAATGGAAGGAATATAAAAAAACTATCAAAGTTAGAGTGGTAGTTTTGATTTTATTTGATAGTGGAAGTTTTGCTATTGTTTTTGCAAGTGTGCGAGGGGATAAAGATGCAGGAGGTTCCAGATATGGCAGACAGAATG........................................................................................................................GTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAAGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGCTGGTGTTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E211794" ref_strand="+" ref_description="SGN-E211794 [cLEC-66-D15]">
      <seq>ataaccagatttagctgtgcataagttttgaccatctcaaatgtcaaggccacaggtcaccatcactttgggacgctcgggtcaaaaagtggttaagcgatcatcagcttctcagggtaatggttttagtcaacagacattgtcaagaggcaaaaggtcattaggagagacctataggactgactctgaggatcctacaaaatcccttcgtaaacgtgtgcgaggggataaagatgcaggaggttccagatatggcagacagaatggtgcacgcattgggaaaaatgacctccgactgaaactaatgcacagaagaaggcaaagggaaattcatctgcagattgaagaaagaaaaaaggagcagcataagaggatgacaagaagtgttcaatctgcagaacaatctcacaagaggcttgtcaccagcagccaaccgtcgtcaggagctagcgaattgcttcagatagaggcaattagatcctcctatacatcacaaactgctgctggtgttagatcaagatccccttatagacttgcaaacgattctaaagaagtctcttcttcaaggaatatcactgcagctcagcatgtaccgtcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="48212" stop="46644"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48012" g_stop="48005" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48004" i_stop="47910" i_length="95">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47909" g_stop="47833" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="85" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47832" i_stop="47735" i_length="98">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47734" g_stop="47604" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="216" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47603" i_stop="47448" i_length="156">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47447" g_stop="47398" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="266" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47397" i_stop="47278" i_length="120">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47277" g_stop="46944" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="600" r_length="334" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E211794" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48012" e_stop="48005"/>
          <exon e_start="47909" e_stop="47833"/>
          <exon e_start="47734" e_stop="47604"/>
          <exon e_start="47447" e_stop="47398"/>
          <exon e_start="47277" e_stop="46944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAACCAGGTAGGTATCTCATTCTCTTTCACCTCCCATTTTTTAGGGTTCCTTCATTTCTATTGACTATCGATTGTTGCATCTTGTTGCTGCAATCCTTTCAGATTTAGCTGTGCATAAGTTTTGACCATCTCAAATGTCAAGGCCACAGGTCACCATCACTTTGGGACGCTCGGGTCAAGTAAGCTTTCTCCACTGTTTTTCGCTTTATGGATCTGTTTGGAGGTTTCTTAATTGTGGGTTCAATTTTTTCTTAATTTGTTACTGTTAAACTTGCAGAAAGTGGTTAAGCGATCATCAGCTTCTCAGGGTAATGGTTTTAGTCAACAGACATTGTCAAGAGGCAAAAGGTCATTAGGAGAGACCTATAGGACTGACTCTGAGGATCCTACAAAATCCCTTCGTAAACGGTAAAATCTTTTGTTTGTTGTTCTGGTTGAGCTAATGTAGGTTGTATCTAATTTATTGTTTTCAGAATAATGGAAGGAATATAAAAAAACTATCAAAGTTAGAGTGGTAGTTTTGATTTTATTTGATAGTGGAAGTTTTGCTATTGTTTTTGCAAGTGTGCGAGGGGATAAAGATGCAGGAGGTTCCAGATATGGCAGACAGAATGGTATTATCTGAAATATTTGTCATTACATGTTGTTTTGTTTTTTGGATGATTCCAGTTTCCTGTGTCATTCTTTGGTCTAGCATATTAGCTCATGTTTGGTACTGTTACTGTGATGTAAAGGTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAAGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGCTGGTGTTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGT</genome_strand>
        <mrna_strand>ATAACCAG...............................................................................................ATTTAGCTGTGCATAAGTTTTGACCATCTCAAATGTCAAGGCCACAGGTCACCATCACTTTGGGACGCTCGGGTCAA..................................................................................................AAAGTGGTTAAGCGATCATCAGCTTCTCAGGGTAATGGTTTTAGTCAACAGACATTGTCAAGAGGCAAAAGGTCATTAGGAGAGACCTATAGGACTGACTCTGAGGATCCTACAAAATCCCTTCGTAAACG............................................................................................................................................................TGTGCGAGGGGATAAAGATGCAGGAGGTTCCAGATATGGCAGACAGAATG........................................................................................................................GTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAAGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGCTGGTGTTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E588997" ref_strand="+" ref_description="SGN-E588997 [42561]">
      <seq>gtataaccagatttagctgtgcataagtttggactatctcaaatggcaaggcctcaggtcaccatcactttgggccgctctggtcaaaaggtggttaagcgatcatcagcttctcagggtaatggtttcagtcaacagtcatcgtcaagaggcaaaaggtcattaggagagacctataggactgactctgaggatcctacgaaatcccttcgtaaacgtgtgcgaggggataaagatgcaggaggttccagatatggcagacagaatggtgcacgcattgggaaaaatgacctccgactgaaactaacgcacagaagaaggcaaatggaaattcttctgcagattgaagaaagaaaaagggagcagcataagaggatgacaagaagtgttcaatctgcagaacaatctcacaggaggcttgtcaccagcagccaaccgtcgtcaggagctagcgaattgcttcaaatagaggcaattagatcctcctatacatcacaaactgctggtggtgttagactaagatcccctttatagacttgcaaacgatttctaaagaactctcttcttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="48212" stop="46679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48014" g_stop="48005" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48004" i_stop="47910" i_length="95">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.946" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47909" g_stop="47833" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="87" r_length="77" r_score="0.922"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47832" i_stop="47735" i_length="98">
            <donor d_prob="0.991" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47734" g_stop="47604" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="218" r_length="131" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47603" i_stop="47448" i_length="156">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47447" g_stop="47398" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="268" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47397" i_stop="47278" i_length="120">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47277" g_stop="46979" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="569" r_length="301" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E588997" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E588997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48014" e_stop="48005"/>
          <exon e_start="47909" e_stop="47833"/>
          <exon e_start="47734" e_stop="47604"/>
          <exon e_start="47447" e_stop="47398"/>
          <exon e_start="47277" e_stop="46979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATAACCAGGTAGGTATCTCATTCTCTTTCACCTCCCATTTTTTAGGGTTCCTTCATTTCTATTGACTATCGATTGTTGCATCTTGTTGCTGCAATCCTTTCAGATTTAGCTGTGCATAAGTTTTGACCATCTCAAATGTCAAGGCCACAGGTCACCATCACTTTGGGACGCTCGGGTCAAGTAAGCTTTCTCCACTGTTTTTCGCTTTATGGATCTGTTTGGAGGTTTCTTAATTGTGGGTTCAATTTTTTCTTAATTTGTTACTGTTAAACTTGCAGAAAGTGGTTAAGCGATCATCAGCTTCTCAGGGTAATGGTTTTAGTCAACAGACATTGTCAAGAGGCAAAAGGTCATTAGGAGAGACCTATAGGACTGACTCTGAGGATCCTACAAAATCCCTTCGTAAACGGTAAAATCTTTTGTTTGTTGTTCTGGTTGAGCTAATGTAGGTTGTATCTAATTTATTGTTTTCAGAATAATGGAAGGAATATAAAAAAACTATCAAAGTTAGAGTGGTAGTTTTGATTTTATTTGATAGTGGAAGTTTTGCTATTGTTTTTGCAAGTGTGCGAGGGGATAAAGATGCAGGAGGTTCCAGATATGGCAGACAGAATGGTATTATCTGAAATATTTGTCATTACATGTTGTTTTGTTTTTTGGATGATTCCAGTTTCCTGTGTCATTCTTTGGTCTAGCATATTAGCTCATGTTTGGTACTGTTACTGTGATGTAAAGGTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAAGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGCTGGTGTTAGATCAAGATCCCC-TTATAGACTTGCAAACGA-TTCTAAAGAAGTCTCTTCTTCA</genome_strand>
        <mrna_strand>GTATAACCAG...............................................................................................ATTTAGCTGTGCATAAGTTTGGACTATCTCAAATGGCAAGGCCTCAGGTCACCATCACTTTGGGCCGCTCTGGTCAA..................................................................................................AAGGTGGTTAAGCGATCATCAGCTTCTCAGGGTAATGGTTTCAGTCAACAGTCATCGTCAAGAGGCAAAAGGTCATTAGGAGAGACCTATAGGACTGACTCTGAGGATCCTACGAAATCCCTTCGTAAACG............................................................................................................................................................TGTGCGAGGGGATAAAGATGCAGGAGGTTCCAGATATGGCAGACAGAATG........................................................................................................................GTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAACGCACAGAAGAAGGCAAATGGAAATTCTTCTGCAGATTGAAGAAAGAAAAAGGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAGGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAAATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGGTGGTGTTAGACTAAGATCCCCTTTATAGACTTGCAAACGATTTCTAAAGAACTCTCTTCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E432331" ref_strand="+" ref_description="SGN-E432331 [STM-56-L10]">
      <seq>ctggagtcaagacatatggagtataaccagatttagctgtgcataagtttggaccatctcaaatggcaaggcctcaggtcaccatcactttgggccgctctggtcaaaaggtggttaagcgatcatcagcttctcagggtaatggtttcagtcaacagtcatcgtcaagaggcaaaaggtcattaggagagacctataggactgactctgaggatcctaccaaatcccttcgtaaacgtgtgcgaggggataaagatgcaggaggttccagatatggcagacagaatggtgcacgcattgggaaaaatgacctccgactgaaactaacgcacagaagaaggcaaagggaaattcttctgcagattgaagaaagaaaaagggagcagcataagaggatgacaagaagtgttcaatctgcagaacaatctcacaggaggcttgtcaccagcagccaaccgtcgtcaggagctagcgaattgcttcagatagaggcaattagatcctcctatacatcacaaactgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="48333" stop="46741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48034" g_stop="48005" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48004" i_stop="47910" i_length="95">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.946" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47909" g_stop="47833" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="107" r_length="77" r_score="0.935"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47832" i_stop="47735" i_length="98">
            <donor d_prob="0.991" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47734" g_stop="47604" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="238" r_length="131" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47603" i_stop="47448" i_length="156">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47447" g_stop="47398" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="288" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47397" i_stop="47278" i_length="120">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47277" g_stop="47041" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="525" r_length="237" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E432331" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E432331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48034" e_stop="48005"/>
          <exon e_start="47909" e_stop="47833"/>
          <exon e_start="47734" e_stop="47604"/>
          <exon e_start="47447" e_stop="47398"/>
          <exon e_start="47277" e_stop="47041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGAGTATAGACATATGGAGTATAACCAGGTAGGTATCTCATTCTCTTTCACCTCCCATTTTTTAGGGTTCCTTCATTTCTATTGACTATCGATTGTTGCATCTTGTTGCTGCAATCCTTTCAGATTTAGCTGTGCATAAGTTTTGACCATCTCAAATGTCAAGGCCACAGGTCACCATCACTTTGGGACGCTCGGGTCAAGTAAGCTTTCTCCACTGTTTTTCGCTTTATGGATCTGTTTGGAGGTTTCTTAATTGTGGGTTCAATTTTTTCTTAATTTGTTACTGTTAAACTTGCAGAAAGTGGTTAAGCGATCATCAGCTTCTCAGGGTAATGGTTTTAGTCAACAGACATTGTCAAGAGGCAAAAGGTCATTAGGAGAGACCTATAGGACTGACTCTGAGGATCCTACAAAATCCCTTCGTAAACGGTAAAATCTTTTGTTTGTTGTTCTGGTTGAGCTAATGTAGGTTGTATCTAATTTATTGTTTTCAGAATAATGGAAGGAATATAAAAAAACTATCAAAGTTAGAGTGGTAGTTTTGATTTTATTTGATAGTGGAAGTTTTGCTATTGTTTTTGCAAGTGTGCGAGGGGATAAAGATGCAGGAGGTTCCAGATATGGCAGACAGAATGGTATTATCTGAAATATTTGTCATTACATGTTGTTTTGTTTTTTGGATGATTCCAGTTTCCTGTGTCATTCTTTGGTCTAGCATATTAGCTCATGTTTGGTACTGTTACTGTGATGTAAAGGTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAAGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTG</genome_strand>
        <mrna_strand>CTGGAGTCAAGACATATGGAGTATAACCAG...............................................................................................ATTTAGCTGTGCATAAGTTTGGACCATCTCAAATGGCAAGGCCTCAGGTCACCATCACTTTGGGCCGCTCTGGTCAA..................................................................................................AAGGTGGTTAAGCGATCATCAGCTTCTCAGGGTAATGGTTTCAGTCAACAGTCATCGTCAAGAGGCAAAAGGTCATTAGGAGAGACCTATAGGACTGACTCTGAGGATCCTACCAAATCCCTTCGTAAACG............................................................................................................................................................TGTGCGAGGGGATAAAGATGCAGGAGGTTCCAGATATGGCAGACAGAATG........................................................................................................................GTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAACGCACAGAAGAAGGCAAAGGGAAATTCTTCTGCAGATTGAAGAAAGAAAAAGGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAGGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E308087" ref_strand="+" ref_description="SGN-E308087 [cLEY-14-N14]">
      <seq>atatggagtataaccagatttagctgtgcataagttttgaccatctcaaatgtcaaggccacaggtcaccatcactttgggacgctcgggtcaaaaagtggttaagcgatcatcagcttctcagggtaatggttttagtcaacagacattgtcaagaggcaaaaggtcattaggagagacctataggactgactctgaggatcctacaaaatcccttcgtaaacggtaaaatcttttgtttgttgttctggttgagctaatgtaggttgtatctaatttattgttttcagaataatggaaggaatataaaaaaactatcaaagttagagtggtagttttgattttatttgatagtggaagttttgctattgtttttgcaagtgtgcgaggggataaagatgcaggaggttccagatatggcagacagaatggtgcacgcattgggaaaaatgacctccgactgaaactaatgcacagaagaaggcaaagggaaattcatctgcagattgaaaaaagaaaaaaggagcagcataagaggatgacaagaagtgttcaatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="48212" stop="46849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48021" g_stop="48005" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48004" i_stop="47910" i_length="95">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47909" g_stop="47833" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="94" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47832" i_stop="47735" i_length="98">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47734" g_stop="47398" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="431" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47397" i_stop="47278" i_length="120">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47277" g_stop="47149" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="560" r_length="129" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E308087" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48021" e_stop="48005"/>
          <exon e_start="47909" e_stop="47833"/>
          <exon e_start="47734" e_stop="47398"/>
          <exon e_start="47277" e_stop="47149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGGAGTATAACCAGGTAGGTATCTCATTCTCTTTCACCTCCCATTTTTTAGGGTTCCTTCATTTCTATTGACTATCGATTGTTGCATCTTGTTGCTGCAATCCTTTCAGATTTAGCTGTGCATAAGTTTTGACCATCTCAAATGTCAAGGCCACAGGTCACCATCACTTTGGGACGCTCGGGTCAAGTAAGCTTTCTCCACTGTTTTTCGCTTTATGGATCTGTTTGGAGGTTTCTTAATTGTGGGTTCAATTTTTTCTTAATTTGTTACTGTTAAACTTGCAGAAAGTGGTTAAGCGATCATCAGCTTCTCAGGGTAATGGTTTTAGTCAACAGACATTGTCAAGAGGCAAAAGGTCATTAGGAGAGACCTATAGGACTGACTCTGAGGATCCTACAAAATCCCTTCGTAAACGGTAAAATCTTTTGTTTGTTGTTCTGGTTGAGCTAATGTAGGTTGTATCTAATTTATTGTTTTCAGAATAATGGAAGGAATATAAAAAAACTATCAAAGTTAGAGTGGTAGTTTTGATTTTATTTGATAGTGGAAGTTTTGCTATTGTTTTTGCAAGTGTGCGAGGGGATAAAGATGCAGGAGGTTCCAGATATGGCAGACAGAATGGTATTATCTGAAATATTTGTCATTACATGTTGTTTTGTTTTTTGGATGATTCCAGTTTCCTGTGTCATTCTTTGGTCTAGCATATTAGCTCATGTTTGGTACTGTTACTGTGATGTAAAGGTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTG</genome_strand>
        <mrna_strand>ATATGGAGTATAACCAG...............................................................................................ATTTAGCTGTGCATAAGTTTTGACCATCTCAAATGTCAAGGCCACAGGTCACCATCACTTTGGGACGCTCGGGTCAA..................................................................................................AAAGTGGTTAAGCGATCATCAGCTTCTCAGGGTAATGGTTTTAGTCAACAGACATTGTCAAGAGGCAAAAGGTCATTAGGAGAGACCTATAGGACTGACTCTGAGGATCCTACAAAATCCCTTCGTAAACGGTAAAATCTTTTGTTTGTTGTTCTGGTTGAGCTAATGTAGGTTGTATCTAATTTATTGTTTTCAGAATAATGGAAGGAATATAAAAAAACTATCAAAGTTAGAGTGGTAGTTTTGATTTTATTTGATAGTGGAAGTTTTGCTATTGTTTTTGCAAGTGTGCGAGGGGATAAAGATGCAGGAGGTTCCAGATATGGCAGACAGAATG........................................................................................................................GTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAAAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E401475" ref_strand="+" ref_description="SGN-E401475 [PPC-4-E18]">
      <seq>ttccagtcaagacatatggagtataaccagatttagctgtgcataagtttggaccatctcaaatggcaaggcctcaggtcaccatcactttgggccgctctggtcaaaaggtggttaagcgatcatcagcttctcagggtaatggtttcagtcaacagtcatcgtcaagaggcaaaaggtcattaggagagacctataggactgactctgaggatcctaccaaatcccttcgtaaacgtgtgcgaggggataaagatgcaggaggttccagatatggcagacagaatggtgcacgcattgggaaaaatgacctccgactgaaactaacgcacagaagaaaggaaagggaaattcttctgcagattgaagaaagaaaaagggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="48334" stop="46882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48034" g_stop="48005" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.867"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48004" i_stop="47910" i_length="95">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.946" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47909" g_stop="47833" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="107" r_length="77" r_score="0.935"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47832" i_stop="47735" i_length="98">
            <donor d_prob="0.991" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47734" g_stop="47604" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="238" r_length="131" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47603" i_stop="47448" i_length="156">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47447" g_stop="47398" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="288" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47397" i_stop="47278" i_length="120">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47277" g_stop="47182" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="384" r_length="96" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E401475" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E401475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48034" e_stop="48005"/>
          <exon e_start="47909" e_stop="47833"/>
          <exon e_start="47734" e_stop="47604"/>
          <exon e_start="47447" e_stop="47398"/>
          <exon e_start="47277" e_stop="47182"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGAGTATAGACATATGGAGTATAACCAGGTAGGTATCTCATTCTCTTTCACCTCCCATTTTTTAGGGTTCCTTCATTTCTATTGACTATCGATTGTTGCATCTTGTTGCTGCAATCCTTTCAGATTTAGCTGTGCATAAGTTTTGACCATCTCAAATGTCAAGGCCACAGGTCACCATCACTTTGGGACGCTCGGGTCAAGTAAGCTTTCTCCACTGTTTTTCGCTTTATGGATCTGTTTGGAGGTTTCTTAATTGTGGGTTCAATTTTTTCTTAATTTGTTACTGTTAAACTTGCAGAAAGTGGTTAAGCGATCATCAGCTTCTCAGGGTAATGGTTTTAGTCAACAGACATTGTCAAGAGGCAAAAGGTCATTAGGAGAGACCTATAGGACTGACTCTGAGGATCCTACAAAATCCCTTCGTAAACGGTAAAATCTTTTGTTTGTTGTTCTGGTTGAGCTAATGTAGGTTGTATCTAATTTATTGTTTTCAGAATAATGGAAGGAATATAAAAAAACTATCAAAGTTAGAGTGGTAGTTTTGATTTTATTTGATAGTGGAAGTTTTGCTATTGTTTTTGCAAGTGTGCGAGGGGATAAAGATGCAGGAGGTTCCAGATATGGCAGACAGAATGGTATTATCTGAAATATTTGTCATTACATGTTGTTTTGTTTTTTGGATGATTCCAGTTTCCTGTGTCATTCTTTGGTCTAGCATATTAGCTCATGTTTGGTACTGTTACTGTGATGTAAAGGTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGC</genome_strand>
        <mrna_strand>TTCCAGTCAAGACATATGGAGTATAACCAG...............................................................................................ATTTAGCTGTGCATAAGTTTGGACCATCTCAAATGGCAAGGCCTCAGGTCACCATCACTTTGGGCCGCTCTGGTCAA..................................................................................................AAGGTGGTTAAGCGATCATCAGCTTCTCAGGGTAATGGTTTCAGTCAACAGTCATCGTCAAGAGGCAAAAGGTCATTAGGAGAGACCTATAGGACTGACTCTGAGGATCCTACCAAATCCCTTCGTAAACG............................................................................................................................................................TGTGCGAGGGGATAAAGATGCAGGAGGTTCCAGATATGGCAGACAGAATG........................................................................................................................GTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAACGCACAGAAGAAAGGAAAGGGAAATTCTTCTGCAGATTGAAGAAAGAAAAAGGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E310348" ref_strand="+" ref_description="SGN-E310348 [cTOA-1-C12]">
      <seq>tcaaatgtcaaggccacaggtcaccatcactttgggacgctcgggtcaaaaagtggttaagcgatcatcagcttctcagggtaatggttttagtcaacagacattgtcaagaggcaaaaggtcattaggagagacctataggactgactctgaggatcctacaaaatcccttcgtaaacgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="48181" stop="47304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47881" g_stop="47833" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47832" i_stop="47735" i_length="98">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47734" g_stop="47604" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="180" r_length="131" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E310348" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>180</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310348" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47881" e_stop="47833"/>
          <exon e_start="47734" e_stop="47604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATGTCAAGGCCACAGGTCACCATCACTTTGGGACGCTCGGGTCAAGTAAGCTTTCTCCACTGTTTTTCGCTTTATGGATCTGTTTGGAGGTTTCTTAATTGTGGGTTCAATTTTTTCTTAATTTGTTACTGTTAAACTTGCAGAAAGTGGTTAAGCGATCATCAGCTTCTCAGGGTAATGGTTTTAGTCAACAGACATTGTCAAGAGGCAAAAGGTCATTAGGAGAGACCTATAGGACTGACTCTGAGGATCCTACAAAATCCCTTCGTAAACG</genome_strand>
        <mrna_strand>TCAAATGTCAAGGCCACAGGTCACCATCACTTTGGGACGCTCGGGTCAA..................................................................................................AAAGTGGTTAAGCGATCATCAGCTTCTCAGGGTAATGGTTTTAGTCAACAGACATTGTCAAGAGGCAAAAGGTCATTAGGAGAGACCTATAGGACTGACTCTGAGGATCCTACAAAATCCCTTCGTAAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E624176" ref_strand="+" ref_description="SGN-E624176 [GI|14275858]">
      <seq>gagccattgtagcagctgccatggtttataaagagaggaagttgtggtggttaacagaatcacatttttgattcaatcggaaagtaggagcgaaaaacgagataacgaagcaataacagccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggcgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccatgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacaatttctatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaacattacgtttttgttgtacatgtatgtttgccttgtagatgaacgcagccaacaatccaaagttctgatgtggcatgttgctgaaaccccatccattacattgttgtgattctgatctcgtcaaatgagcttgggtgggtgaataccagagtgcaattatgctaactgttgtgtgatgcatctagattgtacgagtcagtaataggggattttgggtagcttcagctaatgcaaatcctgattttgtataaaacgggaatcaatttccaatagctgctttgtgaagttcaatccccaggcgcctgacgtgttaataatgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="55558" stop="49643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55254" g_stop="55056" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="237" r_length="196" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55055" i_stop="54486" i_length="570">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54485" g_stop="54373" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="350" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54372" i_stop="51514" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51513" g_stop="51464" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="400" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51463" i_stop="51334" i_length="130">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51333" g_stop="51262" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="472" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51261" i_stop="50613" i_length="649">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50612" g_stop="50552" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="533" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50551" i_stop="50342" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50341" g_stop="49943" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="928" r_length="395" r_score="0.885"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E624176" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>894</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E624176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55254" e_stop="55056"/>
          <exon e_start="54485" e_stop="54373"/>
          <exon e_start="51513" e_stop="51464"/>
          <exon e_start="51333" e_stop="51262"/>
          <exon e_start="50612" e_stop="50552"/>
          <exon e_start="50341" e_stop="49943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGGTGGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAA-G-AG-CAACAATCC--AGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATA--ACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTAGGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAACTGGAATCAATTTCCAAAAGCTGCTTTGTGAAGTTCAAT-CCCAGTCGTCTGACGTGTTAATAATGAAA</genome_strand>
        <mrna_strand>TTGTGGTGGTTAACAGAATCACATTTTTGATTCAATCGGAAAGTAGGAGCGAAAAACGAGATAACGAAGCAATAACAGCCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAG-C--CTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGCGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCATGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACAATTTCTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATGTTTGCCTTGTAGATGAACGCAGCCAACAATCCAAAGTTCTGATGTGGCATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCAAATGAGCTTGGGTGGGTGAATACCAGAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTACGAGTC---AGT-A-A-TAGGGGATTTT--G-GG--T-AGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAACGGGAATCAATTTCCAATAGCTGCTTTGTGAAGTTCAATCCCCAGGCGCCTGACGTGTTAATAATGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728281" ref_strand="+" ref_description="SGN-E728281 [LA17BB12]">
      <seq>gttgtggtggttaacagaatcacatttttgactcaatcggaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaacattacgtttttgttgtacatgtatatttgagtattagatgaagagcaacaatccagttctgatgtgacatgttgctgaaaccccatccattacattgttgtgattctgatctcgtctagtgagattgggtgggtgaataacagtgcaattatgctaactgttgtgtgatgcatctagattgtatgagtcataactcatattaggggattttgggtggcttcagcttcagctaatgcaaatcctgattttgtataaaactggaatcaatttccaaagctgctttgtgaagttcatcccagtcgtctgacgtgttataatgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="55555" stop="49643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55255" g_stop="55056" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55055" i_stop="54486" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54485" g_stop="54373" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="313" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54372" i_stop="51514" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51513" g_stop="51464" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="363" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51463" i_stop="51334" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51333" g_stop="51262" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="435" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51261" i_stop="50613" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50612" g_stop="50552" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="496" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50551" i_stop="50342" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50341" g_stop="49944" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="891" r_length="395" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="892" polyA_stop="904"/>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E728281" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>894</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55255" e_stop="55056"/>
          <exon e_start="54485" e_stop="54373"/>
          <exon e_start="51513" e_stop="51464"/>
          <exon e_start="51333" e_stop="51262"/>
          <exon e_start="50612" e_stop="50552"/>
          <exon e_start="50341" e_stop="49944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTGGTGGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTAGGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAACTGGAATCAATTTCCAAAAGCTGCTTTGTGAAGTTCAATCCCAGTCGTCTGACGTGTTAATAATGAA</genome_strand>
        <mrna_strand>GTTGTGGTGGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTAGGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAACTGGAATCAATTTCC-AAAGCTGCTTTGTGAAGTTC-ATCCCAGTCGTCTGACGTGTT-ATAATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E227523" ref_strand="+" ref_description="SGN-E227523 [cLEL-30-B21](-)">
      <seq>ttgctggagaagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaacattacgtttttgttgtacatgtatatttgagtattagatgaagagcaacaatccagttctgatgtgacatgttgctgaaaccccatccattacattgttgtgattctgatctcgtctagtgagattgggtgggtgaataacagtgcaattatgctaactgttgtgtgatgcatctagattgtatgagtcataactcatattaggggattttgggtggcttcagcttcagctaatgcaaatcctgattttgtataaaactggaatcaatttccaaaagctgctttgtgaagttcaatcccagtcgtctgacgtgttaataatgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="50645" stop="49643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50568" g_stop="50552" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50551" i_stop="50342" i_length="210">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50341" g_stop="49944" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="415" r_length="398" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="416" polyA_stop="430"/>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E227523" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227523" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50568" e_stop="50552"/>
          <exon e_start="50341" e_stop="49944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTAGGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAACTGGAATCAATTTCCAAAAGCTGCTTTGTGAAGTTCAATCCCAGTCGTCTGACGTGTTAATAATGAA</genome_strand>
        <mrna_strand>TTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTAGGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAACTGGAATCAATTTCCAAAAGCTGCTTTGTGAAGTTCAATCCCAGTCGTCTGACGTGTTAATAATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E227310" ref_strand="+" ref_description="SGN-E227310 [cLEL-30-B21](-)">
      <seq>gaacattacgtttttgttgtacatgtatatttgagtattagatgaagagcaacaatccagttctgatgtgacatgttgctgaaaccccatccattacattgttgtgattctgatctcgtctagtgagattgggtgggtgaataacagtgcaattatgctaactgttgtgtgatgcatctagattgtatgagtcataactcatattaggggattttgggtggcttcagcttcagctaatgcaaatcctgattttgtataaaactggaatcaatttccaaaagctgctttgtgaagttcaatcccagtcgtctgacgtgttaataatgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="50571" stop="49643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50271" g_stop="49944" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="329" polyA_stop="343"/>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E227310" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50271" e_stop="49944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTAGGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAACTGGAATCAATTTCCAAAAGCTGCTTTGTGAAGTTCAATCCCAGTCGTCTGACGTGTTAATAATGAA</genome_strand>
        <mrna_strand>GAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTAGGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAACTGGAATCAATTTCCAAAAGCTGCTTTGTGAAGTTCAATCCCAGTCGTCTGACGTGTTAATAATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726468" ref_strand="+" ref_description="SGN-E726468 [LA11DF03]">
      <seq>cgaaagagattttttcctttccgaagttgtggtggttaacagaatcacatttttgactcaatcggaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaacattacgtttttgttgtacatgtatatttgagtattagatgaagagcaacaatccagttctgatgtgacatgttgctgaaaccccatccattacattgttgtgattctgatctcgtctagtgagattgggtgggtgaataacagtgcaattatgctaactgttgtgtgatgcatctagattgtatgagtcataactcatattangggattttgggtggcttcagcttcagctaatgcaaatctgattttgtataaaactggaatcaatttccaaagctgctttgtgaagttcaatcccagtcgtctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="55580" stop="49659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55280" g_stop="55056" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55055" i_stop="54486" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54485" g_stop="54373" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="338" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54372" i_stop="51514" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51513" g_stop="51464" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="388" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51463" i_stop="51334" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51333" g_stop="51262" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="460" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51261" i_stop="50613" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50612" g_stop="50552" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="521" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50551" i_stop="50342" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50341" g_stop="49959" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="902" r_length="381" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E726468" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>904</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55280" e_stop="55056"/>
          <exon e_start="54485" e_stop="54373"/>
          <exon e_start="51513" e_stop="51464"/>
          <exon e_start="51333" e_stop="51262"/>
          <exon e_start="50612" e_stop="50552"/>
          <exon e_start="50341" e_stop="49959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAGAGATTTTTTCCTTTCCGAAGTTGTGGTGGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTAGGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAACTGGAATCAATTTCCAAAAGCTGCTTTGTGAAGTTCAATCCCAGTCGTCTGA</genome_strand>
        <mrna_strand>CGAAAGAGATTTTTTCCTTTCCGAAGTTGTGGTGGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTANGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAAT-CTGATTTTGTATAAAACTGGAATCAATTTCC-AAAGCTGCTTTGTGAAGTTCAATCCCAGTCGTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733461" ref_strand="+" ref_description="SGN-E733461 [LB10AC11]">
      <seq>ggttaacagaatcacatttttgactcaatcggaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaacattacgtttttgttgtacatgtatatttgagtattagatgaagagcaacaatccagttctgatgtgacatgttgctgaaaccccatccattacattgttgtgattctgatctcgtctagtgagattgggtgggtgaataacagtgcaattatgctaactgttgtgtgatgcatctagattgtatgagtcataactcatattaggggattttgggtggcttcagcttcagctaatgcaaatcctgattttgtataaaactggaaatcatttccaaagctgctttgtgaagntcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="55547" stop="49673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55247" g_stop="55056" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55055" i_stop="54486" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54485" g_stop="54373" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="305" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54372" i_stop="51514" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51513" g_stop="51464" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="355" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51463" i_stop="51334" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51333" g_stop="51262" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="427" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51261" i_stop="50613" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50612" g_stop="50552" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="488" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50551" i_stop="50342" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50341" g_stop="49974" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="855" r_length="367" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="856" polyA_stop="872"/>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E733461" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>856</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55247" e_stop="55056"/>
          <exon e_start="54485" e_stop="54373"/>
          <exon e_start="51513" e_stop="51464"/>
          <exon e_start="51333" e_stop="51262"/>
          <exon e_start="50612" e_stop="50552"/>
          <exon e_start="50341" e_stop="49974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTAGGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAACTGGAATCAATTTCCAAAAGCTGCTTTGTGAAGTTCA</genome_strand>
        <mrna_strand>GGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTAGGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAACTGGAAATCATTTCC-AAAGCTGCTTTGTGAAGNTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E555128" ref_strand="+" ref_description="SGN-E555128 [cTSC-6-I10]">
      <seq>ttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaacattacgtttttgttgtacatgtatatttgagtattagatgaagagcaacaatccagttctgatgtgacatgttgctgaaaccccatccattacattgttgtgattctgatctcgtctagtgagattgggtgggtgaataacagtgcaattatgctaactgttgtgtgatgcatctagattgtatgagtcataactcatattaggggattttgggtggcttcagcttcagctaatgcaaatcctgattttgtataaaactggaatcaatttccaaaagctgctttgtgaagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="55417" stop="49675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55117" g_stop="55056" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55055" i_stop="54486" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54485" g_stop="54373" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="175" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54372" i_stop="51514" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51513" g_stop="51464" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="225" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51463" i_stop="51334" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51333" g_stop="51262" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="297" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51261" i_stop="50613" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50612" g_stop="50552" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="358" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50551" i_stop="50342" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50341" g_stop="49975" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="725" r_length="367" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E555128" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55117" e_stop="55056"/>
          <exon e_start="54485" e_stop="54373"/>
          <exon e_start="51513" e_stop="51464"/>
          <exon e_start="51333" e_stop="51262"/>
          <exon e_start="50612" e_stop="50552"/>
          <exon e_start="50341" e_stop="49975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTAGGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAACTGGAATCAATTTCCAAAAGCTGCTTTGTGAAGTTC</genome_strand>
        <mrna_strand>TTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTAGGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAACTGGAATCAATTTCCAAAAGCTGCTTTGTGAAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E370216" ref_strand="+" ref_description="SGN-E370216 [TUS-28-C10](-)">
      <seq>cttcttctactcatcgctgcctcaccgtagccaaaatggagccatcaaagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaacattacgtttttgttgtacatgtatatttgagtattagatgaagagcaacaatccagttctgatgtgacatgttgctgaaaccccatccattacattgttgtgattctgatctcgtctagtgagattgggtgggtgaataacagtgcaattatgctaactgttgtgtgatgcatctagattgtatgagtcataactcatattaggggattttgggtggcttcagcttcagctaatgcaaatcctgattttgtataaaactggaatcaatttccaaaagctgctttaaaaattcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="55391" stop="49684"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55091" g_stop="55056" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55055" i_stop="54486" i_length="570">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54485" g_stop="54373" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="149" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54372" i_stop="51514" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51513" g_stop="51464" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="199" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51463" i_stop="51334" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51333" g_stop="51262" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="271" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51261" i_stop="50613" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50612" g_stop="50552" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="332" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50551" i_stop="50342" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50341" g_stop="49984" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="690" r_length="358" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="699" polyA_stop="711"/>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E370216" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55091" e_stop="55056"/>
          <exon e_start="54485" e_stop="54373"/>
          <exon e_start="51513" e_stop="51464"/>
          <exon e_start="51333" e_stop="51262"/>
          <exon e_start="50612" e_stop="50552"/>
          <exon e_start="50341" e_stop="49984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTAGGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAACTGGAATCAATTTCCAAAAGCTGCTTT</genome_strand>
        <mrna_strand>CTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAAAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTAGGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAACTGGAATCAATTTCCAAAAGCTGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E350998" ref_strand="+" ref_description="SGN-E350998 [cTOS-6-G3]">
      <seq>ttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaacattacgtttttgttgtacatgtatatttgagtattagatgaagagcaacaatccagttctgatgtgacatgttgctgaaaccccatccattacattgttgtgattctgatctcgtctagtgagattgggtgggtgaataacagtgcaattatgctaactggtgtgtgatgcatctagattgtatgagtcataactcatattangggattttgggtggcttcagcttcagctaatgcaaatcctgattttgtataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="55411" stop="49711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55111" g_stop="55056" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55055" i_stop="54486" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54485" g_stop="54373" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="169" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54372" i_stop="51514" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51513" g_stop="51464" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="219" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51463" i_stop="51334" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51333" g_stop="51262" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="291" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51261" i_stop="50613" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50612" g_stop="50552" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="352" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50551" i_stop="50342" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50341" g_stop="50003" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="691" r_length="339" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E350998" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55111" e_stop="55056"/>
          <exon e_start="54485" e_stop="54373"/>
          <exon e_start="51513" e_stop="51464"/>
          <exon e_start="51333" e_stop="51262"/>
          <exon e_start="50612" e_stop="50552"/>
          <exon e_start="50341" e_stop="50003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTAGGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAACTGGAATC</genome_strand>
        <mrna_strand>TTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGGTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTANGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E348512" ref_strand="+" ref_description="SGN-E348512 [cTOF-30-F15]">
      <seq>aagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaacattacgtttttgttgtacatgtatatttgagtattagatgaagagcaacaatccagttctgatgtgacatgttgctgaaaccccatccattacattgttgtgattctgatctcgtctagtgagattgggtgggtgaataacagtgcaattatgctaactgttgtgtgatgcatctagattgtatgagtcataactcatattaggggattttgggtggcttcagcttcagctaatgcaaatcctgattttgtataaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="50645" stop="49711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50559" g_stop="50552" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50551" i_stop="50342" i_length="210">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50341" g_stop="50011" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="339" r_length="331" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="340" polyA_stop="360"/>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E348512" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50559" e_stop="50552"/>
          <exon e_start="50341" e_stop="50011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTAGGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAA</genome_strand>
        <mrna_strand>AAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTAGGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E288600" ref_strand="+" ref_description="SGN-E288600 [cLES-8-L16]">
      <seq>tttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaacattacgtttttgttgtacatgtatatttgagtattagatgaagagcaacaatccagttctgatgtgacatgttgctgaaaccccatccattacattgttgtgattctgatctcgtctagtgagattgggtgggtgaataacagtgcaattatgctaactgttgtgtgatgcatctagattgtatgagtcataactcatattangggattttgggtggcttcagcttcagctaatgcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="51811" stop="49729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51511" g_stop="51464" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51463" i_stop="51334" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51333" g_stop="51262" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="120" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51261" i_stop="50613" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50612" g_stop="50552" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="181" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50551" i_stop="50342" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50341" g_stop="50029" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="494" r_length="313" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E288600" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51511" e_stop="51464"/>
          <exon e_start="51333" e_stop="51262"/>
          <exon e_start="50612" e_stop="50552"/>
          <exon e_start="50341" e_stop="50029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTAGGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAA</genome_strand>
        <mrna_strand>TTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTANGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E605263" ref_strand="+" ref_description="SGN-E605263 [21179]">
      <seq>atttttgattcaatcggaaagtaggagcgaaaaacgagataacgaagcaataacagccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggcgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccatgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacaatttctatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaacattacgtttttgttgtacatgtatgtttgagttgtagatgaagagcaacaatcaaagttctgatgtggcatgttgctgaaaccccatccattacattgttgtgattctgatctcgtcaaatgagcttgggtgggtgaataccagagtgcaattatgctaactgttgtgtgatgcatctagattgtacgagtcagtaatagggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="55532" stop="49823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55232" g_stop="55056" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55055" i_stop="54486" i_length="570">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54485" g_stop="54373" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="287" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54372" i_stop="51514" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51513" g_stop="51464" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="337" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51463" i_stop="51334" i_length="130">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51333" g_stop="51262" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="409" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51261" i_stop="50613" i_length="649">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50612" g_stop="50552" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="470" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50551" i_stop="50342" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50341" g_stop="50066" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="748" r_length="278" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E605263" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E605263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55232" e_stop="55056"/>
          <exon e_start="54485" e_stop="54373"/>
          <exon e_start="51513" e_stop="51464"/>
          <exon e_start="51333" e_stop="51262"/>
          <exon e_start="50612" e_stop="50552"/>
          <exon e_start="50341" e_stop="50066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATC-CAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATA--ACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTA</genome_strand>
        <mrna_strand>ATTTTTGATTCAATCGGAAAGTAGGAGCGAAAAACGAGATAACGAAGCAATAACAGCCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAG-C--CTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGCGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCATGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACAATTTCTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATGTTTGAGTTGTAGATGAAGAGCAACAATCAAAGTTCTGATGTGGCATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCAAATGAGCTTGGGTGGGTGAATACCAGAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTACGAGTCAGTAAT-AGGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E327442" ref_strand="+" ref_description="SGN-E327442 [cTOC-19-F7]">
      <seq>tcacatttttgactcaatcggaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaacattacgtttttgttgtacatgtatatttgagtattagatgaagagcaacaatccagttctgatgtgacatgttgctgaaacccatccattacattgttgtgattctgatctcgtctagtgagattgggtggggtgataacagtgcaattatgctaactgttgtgtgatgcatctagattgtatgagtcataact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="55536" stop="49773"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55236" g_stop="55056" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55055" i_stop="54486" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54485" g_stop="54373" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="294" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54372" i_stop="51514" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51513" g_stop="51464" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="344" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51463" i_stop="51334" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51333" g_stop="51262" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="416" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51261" i_stop="50613" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50612" g_stop="50552" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="477" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50551" i_stop="50342" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50341" g_stop="50073" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="745" r_length="268" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E327442" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55236" e_stop="55056"/>
          <exon e_start="54485" e_stop="54373"/>
          <exon e_start="51513" e_stop="51464"/>
          <exon e_start="51333" e_stop="51262"/>
          <exon e_start="50612" e_stop="50552"/>
          <exon e_start="50341" e_stop="50073"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACT</genome_strand>
        <mrna_strand>TCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAA-CCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGGTGATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347108" ref_strand="+" ref_description="SGN-E347108 [cTOF-25-N2]">
      <seq>aacagaatcacatttttgactcaatcggaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaacattacgtttttgttgtacatgtatatttgagtattagatgaagagcaacaatccagttctgatgtgacatgttgctgaaaacccatccattacattgttgtgattctgatcttcgctagtgagattgggtgggtgaataacagtgcaattatgcttaactggtggtgatgcatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="55543" stop="49793"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55243" g_stop="55056" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55055" i_stop="54486" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54485" g_stop="54373" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="301" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54372" i_stop="51514" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51513" g_stop="51464" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="351" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51463" i_stop="51334" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51333" g_stop="51262" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="423" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51261" i_stop="50613" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50612" g_stop="50552" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="484" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50551" i_stop="50342" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50341" g_stop="50093" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="733" r_length="249" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E347108" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347108" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55243" e_stop="55056"/>
          <exon e_start="54485" e_stop="54373"/>
          <exon e_start="51513" e_stop="51464"/>
          <exon e_start="51333" e_stop="51262"/>
          <exon e_start="50612" e_stop="50552"/>
          <exon e_start="50341" e_stop="50093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGC-TAACTGTTGTGTGATGCATCT</genome_strand>
        <mrna_strand>AACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAAACCCATCCATTACATTGTTGTGATTCTGATCTTCGCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTTAACTGGTG-GTGATGCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E484860" ref_strand="+" ref_description="SGN-E484860 [cSTE-15-H17]">
      <seq>cagaatcacatttttgattcaatcggaaagtaggagcgaaaaacgagataacgaagcaataacagccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggcgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccatgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacaatttctatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaacattacgtttttgttgtacatgtatgtttgagttgtagatgaagagncacaatcaaagttctgatgtggcatgttgctgaaaccccatccattacattgntgtgattctgatctcgtcaaatgagcttgggtgggtgaataccagagtgcaattatgctaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="55541" stop="49823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55241" g_stop="55056" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55055" i_stop="54486" i_length="570">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54485" g_stop="54373" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="296" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54372" i_stop="51514" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51513" g_stop="51464" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="346" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51463" i_stop="51334" i_length="130">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51333" g_stop="51262" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="418" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51261" i_stop="50613" i_length="649">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50612" g_stop="50552" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="479" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50551" i_stop="50342" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50341" g_stop="50109" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="715" r_length="236" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E484860" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E484860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55241" e_stop="55056"/>
          <exon e_start="54485" e_stop="54373"/>
          <exon e_start="51513" e_stop="51464"/>
          <exon e_start="51333" e_stop="51262"/>
          <exon e_start="50612" e_stop="50552"/>
          <exon e_start="50341" e_stop="50109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATC-CAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATA--ACAGTGCAATTATGCTAACT</genome_strand>
        <mrna_strand>CAGAATCACATTTTTGATTCAATCGGAAAGTAGGAGCGAAAAACGAGATAACGAAGCAATAACAGCCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAG-C--CTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGCGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCATGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACAATTTCTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATGTTTGAGTTGTAGATGAAGAGNCACAATCAAAGTTCTGATGTGGCATGTTGCTGAAACCCCATCCATTACATTGNTGTGATTCTGATCTCGTCAAATGAGCTTGGGTGGGTGAATACCAGAGTGCAATTATGCTAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E462439" ref_strand="+" ref_description="SGN-E462439 [cPRO-11-N21]">
      <seq>acagaatcacatttttgactcaatcgggaaagtaggagcgaaaaacgagataacgaagcaataacagccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggcgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttttggaattgtccatgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacaatttctatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaacattacgtttttgttgtacatgtatatttgagttgtagatgaagagcaacaatcaaagttctgatgtgacatgttgctgaaacccatccattacattgttgtgattctgatctcgtcaatgagcttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="55542" stop="49840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55242" g_stop="55056" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55055" i_stop="54486" i_length="570">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54485" g_stop="54373" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="298" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54372" i_stop="51514" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51513" g_stop="51464" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="348" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51463" i_stop="51334" i_length="130">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51333" g_stop="51262" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="420" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51261" i_stop="50613" i_length="649">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50612" g_stop="50552" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="481" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50551" i_stop="50342" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50341" g_stop="50140" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="682" r_length="201" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E462439" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E462439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55242" e_stop="55056"/>
          <exon e_start="54485" e_stop="54373"/>
          <exon e_start="51513" e_stop="51464"/>
          <exon e_start="51333" e_stop="51262"/>
          <exon e_start="50612" e_stop="50552"/>
          <exon e_start="50341" e_stop="50140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGAATCACATTTTTGACTCAATC-GGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATC-CAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGG</genome_strand>
        <mrna_strand>ACAGAATCACATTTTTGACTCAATCGGGAAAGTAGGAGCGAAAAACGAGATAACGAAGCAATAACAGCCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAG-C--CTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGCGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTTTGGAATTGTCCATGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACAATTTCTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTTGTAGATGAAGAGCAACAATCAAAGTTCTGATGTGACATGTTGCTGAAA-CCCATCCATTACATTGTTGTGATTCTGATCTCGTC-AATGAGCTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E290759" ref_strand="+" ref_description="SGN-E290759 [cLET-10-N11]">
      <seq>ttaacagaatcacatttttgactcaatcggaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaacattacgtttttgttgtacatgtatatttgagtattagatgaagagcaacaatccagttctgatgtgacatgttgctgaaaccccatccattacattgttgggattctgatctcgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="55545" stop="49851"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55245" g_stop="55056" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55055" i_stop="54486" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54485" g_stop="54373" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="303" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54372" i_stop="51514" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51513" g_stop="51464" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="353" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51463" i_stop="51334" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51333" g_stop="51262" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="425" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51261" i_stop="50613" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50612" g_stop="50552" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="486" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50551" i_stop="50342" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50341" g_stop="50151" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="677" r_length="191" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E290759" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55245" e_stop="55056"/>
          <exon e_start="54485" e_stop="54373"/>
          <exon e_start="51513" e_stop="51464"/>
          <exon e_start="51333" e_stop="51262"/>
          <exon e_start="50612" e_stop="50552"/>
          <exon e_start="50341" e_stop="50151"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCT</genome_strand>
        <mrna_strand>TTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGGGATTCTGATCTCGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E403945" ref_strand="+" ref_description="SGN-E403945 [PPC-12-O17]">
      <seq>ctgaatcacattttttactcaatcggaaagtaggagcgaaaaacgagataacgaagcaataacagccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggcgctccactctgcccctgtcggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccatgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacaattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgattattacgtttttgttgtacatgtatatttgagttgtagatgaagagcaacaatcaaagttctgatgtgacatgttgctgaaaccccatccattacattgttgtgattctgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="55541" stop="49856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55241" g_stop="55056" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55055" i_stop="54486" i_length="570">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54485" g_stop="54373" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="296" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54372" i_stop="51514" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51513" g_stop="51464" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="346" r_length="50" r_score="0.940"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51463" i_stop="51334" i_length="130">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51333" g_stop="51262" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="418" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51261" i_stop="50613" i_length="649">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50612" g_stop="50552" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="479" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50551" i_stop="50342" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50341" g_stop="50156" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="666" r_length="187" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E403945" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E403945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55241" e_stop="55056"/>
          <exon e_start="54485" e_stop="54373"/>
          <exon e_start="51513" e_stop="51464"/>
          <exon e_start="51333" e_stop="51262"/>
          <exon e_start="50612" e_stop="50552"/>
          <exon e_start="50341" e_stop="50156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATC-CAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCT</genome_strand>
        <mrna_strand>CTGAATCACATTTTTTACTCAATCGGAAAGTAGGAGCGAAAAACGAGATAACGAAGCAATAACAGCCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAG-C--CTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGCGCTCCACTCTGCCCCTGTCG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCATGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACAATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGATTATTACGTTTTTGTTGTACATGTATATTTGAGTTGTAGATGAAGAGCAACAATCAAAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E370217" ref_strand="+" ref_description="SGN-E370217 [TUS-28-C10]">
      <seq>acagaatcacatttttgactcaatcggaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaacattacgtttttgttgtacatgtatatttgagtattagatgaagagcaacaatccagttctgatgtgacatgttgctgaaaccccatccattacattgttgtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="55542" stop="49864"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55242" g_stop="55056" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55055" i_stop="54486" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54485" g_stop="54373" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="300" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54372" i_stop="51514" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51513" g_stop="51464" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="350" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51463" i_stop="51334" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51333" g_stop="51262" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="422" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51261" i_stop="50613" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50612" g_stop="50552" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="483" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50551" i_stop="50342" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50341" g_stop="50164" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="661" r_length="178" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E370217" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370217" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55242" e_stop="55056"/>
          <exon e_start="54485" e_stop="54373"/>
          <exon e_start="51513" e_stop="51464"/>
          <exon e_start="51333" e_stop="51262"/>
          <exon e_start="50612" e_stop="50552"/>
          <exon e_start="50341" e_stop="50164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGAT</genome_strand>
        <mrna_strand>ACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E697126" ref_strand="+" ref_description="SGN-E697126 [LH_Ea10O20](-)">
      <seq>gcagtatgttcgcaggtcagaaacatatttttgcatggacaaaggtgttacttttgtggtcatcaagggtttggcagagcacaaggatacattgggtggtccactttgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttttggaattgtccgtgtgtaccaatgagagagaggaaggagtgtccctgcatgctttttttgacccctgataatgattttgctggagaagaacagccgattcctatggaggagattaaggaaacaacagccaacatgggatgttcggacattttatacatgttatgaacattacgtttttgttgtacatgtatatttgagtagtagatgaagagcaacaatccagttttgatgtgacatgttgctgaaacgccatcctttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="54739" stop="49874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54439" g_stop="54373" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54372" i_stop="51514" i_length="2859">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.718" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51513" g_stop="51464" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="117" r_length="50" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51463" i_stop="51334" i_length="130">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51333" g_stop="51262" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="189" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51261" i_stop="50613" i_length="649">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.854" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50612" g_stop="50552" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="250" r_length="61" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50551" i_stop="50342" i_length="210">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.960" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50341" g_stop="50180" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="412" r_length="162" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="416" polyA_stop="447"/>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E697126" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54439" e_stop="54373"/>
          <exon e_start="51513" e_stop="51464"/>
          <exon e_start="51333" e_stop="51262"/>
          <exon e_start="50612" e_stop="50552"/>
          <exon e_start="50341" e_stop="50180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCC</genome_strand>
        <mrna_strand>GCAGTATGTTCGCAGGTCAGAAACATATTTTTGCATGGACAAAGGTGTTACTTTTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGGTCCACTTTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTTTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCCCTGCATGCTTTTTTTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................CCGATTCCTATGGAGGAGATTAAGGAAACAACAGCCAACATGGGATGTTCGGACATTTTATACATGTTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTAGTAGATGAAGAGCAACAATCCAGTTTTGATGTGACATGTTGCTGAAACGCCATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E693286" ref_strand="+" ref_description="SGN-E693286 [LH_Ea10O20]">
      <seq>gcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgttatgaacattacgtttttgttgtacatgtatatttgagtagtagatgaagagcaacaatccagttctgatgtgacatgttgctgaaaccccatcctttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="54739" stop="49874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54439" g_stop="54373" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54372" i_stop="51514" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51513" g_stop="51464" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="117" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51463" i_stop="51334" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51333" g_stop="51262" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="189" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51261" i_stop="50613" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50612" g_stop="50552" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="250" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50551" i_stop="50342" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50341" g_stop="50180" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="412" r_length="162" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="416" polyA_stop="445"/>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E693286" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E693286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54439" e_stop="54373"/>
          <exon e_start="51513" e_stop="51464"/>
          <exon e_start="51333" e_stop="51262"/>
          <exon e_start="50612" e_stop="50552"/>
          <exon e_start="50341" e_stop="50180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCC</genome_strand>
        <mrna_strand>GCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGTTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTAGTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E327034" ref_strand="+" ref_description="SGN-E327034 [cTOC-18-B19]">
      <seq>agaatcacatttttgactcaatcggaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaacattacgtttttgttgtacatgtatatttgagtattagatgaagaagcacaatccagttctgatgtgacatgttgctgaaaccccatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="55540" stop="49881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55240" g_stop="55056" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55055" i_stop="54486" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54485" g_stop="54373" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="298" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54372" i_stop="51514" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51513" g_stop="51464" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="348" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51463" i_stop="51334" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51333" g_stop="51262" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="420" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51261" i_stop="50613" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50612" g_stop="50552" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="481" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50551" i_stop="50342" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50341" g_stop="50181" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="642" r_length="161" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E327034" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55240" e_stop="55056"/>
          <exon e_start="54485" e_stop="54373"/>
          <exon e_start="51513" e_stop="51464"/>
          <exon e_start="51333" e_stop="51262"/>
          <exon e_start="50612" e_stop="50552"/>
          <exon e_start="50341" e_stop="50181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATC</genome_strand>
        <mrna_strand>AGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAAGCACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E406281" ref_strand="+" ref_description="SGN-E406281 [PPI-3-E14]">
      <seq>ggttaacagaatcaccttttgactcaatcggaagtaggagccgaaaaacgagacaacgaagcaataaccagccggaacccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttctacctcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagaacacaaggatacattgggcgctccactctgcccctgcaggcattatgaataccaagctgcagaagcgcagcagggcttctggaattgtccatgtgtacccaatgagagaaaagaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacaatttctatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaacattacgtttttgttgtacattgtatgtttgagttgtagatgaagagcaacantcaaagttctgatgtggcatgttgctgaaaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="55530" stop="49885"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55247" g_stop="55056" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55055" i_stop="54486" i_length="570">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54485" g_stop="54373" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="303" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54372" i_stop="51514" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51513" g_stop="51464" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="353" r_length="50" r_score="0.960"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51463" i_stop="51334" i_length="130">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51333" g_stop="51262" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="426" r_length="73" r_score="0.889"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51261" i_stop="50613" i_length="649">
            <donor d_prob="0.995" d_score="0.90"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50612" g_stop="50552" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="487" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50551" i_stop="50342" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50341" g_stop="50185" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="646" r_length="159" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E406281" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E406281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55247" e_stop="55056"/>
          <exon e_start="54485" e_stop="54373"/>
          <exon e_start="51513" e_stop="51464"/>
          <exon e_start="51333" e_stop="51262"/>
          <exon e_start="50612" e_stop="50552"/>
          <exon e_start="50341" e_stop="50185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAG-AAAACGAGACAACGAAGCAACAACTA-CCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTA-CCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACA-TGTATATTTGAGTATTAGATGAAGAGCAACAATC-CAGTTCTGATGTGACATGTTGCTGAAACCC</genome_strand>
        <mrna_strand>GGTTAACAGAATCAC-CTTTTGACTCAATCGG-AAGTAGGAGCCGAAAAACGAGACAACGAAGCAATAACCAGCCGGAACCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTAC--CTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAACACAAGGATACATTGGGCGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGAATACCAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCATGTGTACCCAATGAGAGAAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACAATTTCTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATTGTATGTTTGAGTTGTAGATGAAGAGCAACANTCAAAGTTCTGATGTGGCATGTTGCTGAAACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E722067" ref_strand="+" ref_description="SGN-E722067 [FC16AD09]">
      <seq>ggccgaattgcttttccgaagttgccttggttaacagaatcacatttttgactcaatcggaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcaaagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcaaaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaacattacgtttttgttgtacatgtatatttgagtattagatgaagagcaacaatccagttctgatgtgaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="55548" stop="49899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55275" g_stop="55056" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55055" i_stop="54486" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54485" g_stop="54373" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="333" r_length="113" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54372" i_stop="51514" i_length="2859">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51513" g_stop="51464" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="383" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51463" i_stop="51334" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51333" g_stop="51262" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="455" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51261" i_stop="50613" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50612" g_stop="50552" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="516" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50551" i_stop="50342" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50341" g_stop="50196" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="662" r_length="146" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E722067" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55275" e_stop="55056"/>
          <exon e_start="54485" e_stop="54373"/>
          <exon e_start="51513" e_stop="51464"/>
          <exon e_start="51333" e_stop="51262"/>
          <exon e_start="50612" e_stop="50552"/>
          <exon e_start="50341" e_stop="50196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATTTTTTCCTTTCCGAAGTTGTGGTGGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGT</genome_strand>
        <mrna_strand>GGCCGAATTGCTTTTCCGAAGTTGCCTTGGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAAAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAAAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E300501" ref_strand="+" ref_description="SGN-E300501 [cLET-45-J2]">
      <seq>agaatcacatttttgactcaatcggaaagtcggagcagaaaacgagacaacgaagcgacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattctgctggagaagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaacattacgttgttgttgcacatgtatatttgagtattagatgaagagcaacaatccagttctgatgtgacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="55540" stop="49898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55240" g_stop="55056" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55055" i_stop="54486" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54485" g_stop="54373" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="298" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54372" i_stop="51514" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51513" g_stop="51464" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="348" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51463" i_stop="51334" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51333" g_stop="51262" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="420" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51261" i_stop="50613" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50612" g_stop="50552" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="481" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50551" i_stop="50342" i_length="210">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50341" g_stop="50198" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="625" r_length="144" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E300501" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55240" e_stop="55056"/>
          <exon e_start="54485" e_stop="54373"/>
          <exon e_start="51513" e_stop="51464"/>
          <exon e_start="51333" e_stop="51262"/>
          <exon e_start="50612" e_stop="50552"/>
          <exon e_start="50341" e_stop="50198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACAT</genome_strand>
        <mrna_strand>AGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCGACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTCTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTGTTGTTGCACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E408777" ref_strand="+" ref_description="SGN-E408777 [PPI-12-M9]">
      <seq>cagaatcacatttttgactcaatcgggaaagtaggagcgaaaaacgagataacgaagcaataacagccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggcgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttttggaattgtccatgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacaatttctatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaacattacgtttttgttgtacatgtatatttgagttgtanatgaagagagccactctcaaagctctgatgtgacatgttgctagaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="55541" stop="49888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55241" g_stop="55056" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55055" i_stop="54486" i_length="570">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54485" g_stop="54373" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="297" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54372" i_stop="51514" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51513" g_stop="51464" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="347" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51463" i_stop="51334" i_length="130">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51333" g_stop="51262" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="419" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51261" i_stop="50613" i_length="649">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50612" g_stop="50552" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="480" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50551" i_stop="50342" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50341" g_stop="50224" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="598" r_length="118" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="634" polyA_stop="647"/>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E408777" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E408777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55241" e_stop="55056"/>
          <exon e_start="54485" e_stop="54373"/>
          <exon e_start="51513" e_stop="51464"/>
          <exon e_start="51333" e_stop="51262"/>
          <exon e_start="50612" e_stop="50552"/>
          <exon e_start="50341" e_stop="50224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAATCACATTTTTGACTCAATC-GGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGA</genome_strand>
        <mrna_strand>CAGAATCACATTTTTGACTCAATCGGGAAAGTAGGAGCGAAAAACGAGATAACGAAGCAATAACAGCCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAG-C--CTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGCGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTTTGGAATTGTCCATGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACAATTTCTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTTGTANATGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E292908" ref_strand="+" ref_description="SGN-E292908 [cLET-11-B6]">
      <seq>agaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaacattacgtttttgttgtacatgtatatttgagtattagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="55504" stop="49929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55204" g_stop="55056" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55055" i_stop="54486" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54485" g_stop="54373" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="262" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54372" i_stop="51514" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51513" g_stop="51464" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="312" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51463" i_stop="51334" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51333" g_stop="51262" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="384" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51261" i_stop="50613" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50612" g_stop="50552" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="445" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50551" i_stop="50342" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50341" g_stop="50229" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="558" r_length="113" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E292908" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55204" e_stop="55056"/>
          <exon e_start="54485" e_stop="54373"/>
          <exon e_start="51513" e_stop="51464"/>
          <exon e_start="51333" e_stop="51262"/>
          <exon e_start="50612" e_stop="50552"/>
          <exon e_start="50341" e_stop="50229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGAT</genome_strand>
        <mrna_strand>AGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E270741" ref_strand="+" ref_description="SGN-E270741 [cLEM-6-D6]">
      <seq>acagaatcacatttttgactcaatcggaaagtcggagcagaagacgagacaacggagcaactactaccggaatccgccatgagaactcttcaagcttccacctactacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttgtactcatcgctgcctcaccggatccaaaatggagccatgatagaaatctgttgaaatcatgatgaaattgtaggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcatcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaacattacgtttttgttgtacatgtatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="55542" stop="49941"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55242" g_stop="55056" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55055" i_stop="54486" i_length="570">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.959" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54485" g_stop="54373" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="300" r_length="113" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54372" i_stop="51514" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51513" g_stop="51464" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="350" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51463" i_stop="51334" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51333" g_stop="51262" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="422" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51261" i_stop="50613" i_length="649">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50612" g_stop="50552" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="483" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50551" i_stop="50342" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50341" g_stop="50241" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="584" r_length="101" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E270741" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55242" e_stop="55056"/>
          <exon e_start="54485" e_stop="54373"/>
          <exon e_start="51513" e_stop="51464"/>
          <exon e_start="51333" e_stop="51262"/>
          <exon e_start="50612" e_stop="50552"/>
          <exon e_start="50341" e_stop="50241"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATT</genome_strand>
        <mrna_strand>ACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAGACGAGACAACGGAGCAACTACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTACTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTGTACTCATCGCTGCCTCACCGGATCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATGATAGAAATCTGTTGAAATCATGATGAAATTGTAGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCATCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E409270" ref_strand="+" ref_description="SGN-E409270 [PPI-13-J3]">
      <seq>gaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggcgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccatgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacaatttctatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgattattacggttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="55460" stop="49959"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55160" g_stop="55056" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55055" i_stop="54486" i_length="570">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54485" g_stop="54373" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="215" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54372" i_stop="51514" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51513" g_stop="51464" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="265" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51463" i_stop="51334" i_length="130">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51333" g_stop="51262" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="337" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51261" i_stop="50613" i_length="649">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50612" g_stop="50552" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="398" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50551" i_stop="50342" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50341" g_stop="50258" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="482" r_length="84" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E409270" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E409270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55160" e_stop="55056"/>
          <exon e_start="54485" e_stop="54373"/>
          <exon e_start="51513" e_stop="51464"/>
          <exon e_start="51333" e_stop="51262"/>
          <exon e_start="50612" e_stop="50552"/>
          <exon e_start="50341" e_stop="50258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTT</genome_strand>
        <mrna_strand>GAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTC-T--ACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGCGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCATGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACAATTTCTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGATTATTACGGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E283989" ref_strand="+" ref_description="SGN-E283989 [cLER-13-J10]">
      <seq>agaatcacatttttgactcaatcggaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="55540" stop="49967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55240" g_stop="55056" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55055" i_stop="54486" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54485" g_stop="54373" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="298" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54372" i_stop="51514" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51513" g_stop="51464" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="348" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51463" i_stop="51334" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51333" g_stop="51262" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="420" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51261" i_stop="50613" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50612" g_stop="50552" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="481" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50551" i_stop="50342" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50341" g_stop="50267" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="556" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E283989" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55240" e_stop="55056"/>
          <exon e_start="54485" e_stop="54373"/>
          <exon e_start="51513" e_stop="51464"/>
          <exon e_start="51333" e_stop="51262"/>
          <exon e_start="50612" e_stop="50552"/>
          <exon e_start="50341" e_stop="50267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACA</genome_strand>
        <mrna_strand>AGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E305564" ref_strand="+" ref_description="SGN-E305564 [cLEX-14-M7]">
      <seq>tggttaacagaatcacatttttgactcaatcggaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggaaaaaaacagactattactaggggggagattaaggaaacccccgccgacttgtgaggctcggacatcttatacatgctatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="55548" stop="49969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55248" g_stop="55056" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55055" i_stop="54486" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54485" g_stop="54373" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="306" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54372" i_stop="51514" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51513" g_stop="51464" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="356" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51463" i_stop="51334" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51333" g_stop="51262" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="428" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51261" i_stop="50613" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50612" g_stop="50552" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="489" r_length="61" r_score="0.967"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50551" i_stop="50342" i_length="210">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.960" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50341" g_stop="50269" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="562" r_length="73" r_score="0.877"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E305564" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55248" e_stop="55056"/>
          <exon e_start="54485" e_stop="54373"/>
          <exon e_start="51513" e_stop="51464"/>
          <exon e_start="51333" e_stop="51262"/>
          <exon e_start="50612" e_stop="50552"/>
          <exon e_start="50341" e_stop="50269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAA</genome_strand>
        <mrna_strand>TGGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAAAAAAACAG..................................................................................................................................................................................................................ACTATTACTAGGGGGGAGATTAAGGAAACCCCCGCCGACTTGTGAGGCTCGGACATCTTATACATGCTATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725832" ref_strand="+" ref_description="SGN-E725832 [LA05DF10]">
      <seq>gttaacagaatcacatttttgactaaatcggaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacgnatactatggaggagattaaaggaacacagccacatgtgatgctcggacatctatacatgctatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="55546" stop="49970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55246" g_stop="55056" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55055" i_stop="54486" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54485" g_stop="54373" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="304" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54372" i_stop="51514" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51513" g_stop="51464" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="354" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51463" i_stop="51334" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51333" g_stop="51262" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="426" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51261" i_stop="50613" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50612" g_stop="50552" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="487" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50551" i_stop="50342" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50341" g_stop="50270" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="556" r_length="69" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E725832" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55246" e_stop="55056"/>
          <exon e_start="54485" e_stop="54373"/>
          <exon e_start="51513" e_stop="51464"/>
          <exon e_start="51333" e_stop="51262"/>
          <exon e_start="50612" e_stop="50552"/>
          <exon e_start="50341" e_stop="50270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGA</genome_strand>
        <mrna_strand>GTTAACAGAATCACATTTTTGACTAAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGNATACTATGGAGGAGATTAAAGGAAC-ACAGCC-ACATGTGATGCTCGGACATC-TATACATGCTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E358679" ref_strand="+" ref_description="SGN-E358679 [cLHT-22-L21]">
      <seq>gaatcacatttttgactcaatcggaaagtaggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="55539" stop="49971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55239" g_stop="55056" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55055" i_stop="54486" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54485" g_stop="54373" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="297" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54372" i_stop="51514" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51513" g_stop="51464" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="347" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51463" i_stop="51334" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51333" g_stop="51262" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="419" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51261" i_stop="50613" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50612" g_stop="50552" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="480" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50551" i_stop="50342" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50341" g_stop="50271" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="551" r_length="71" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E358679" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55239" e_stop="55056"/>
          <exon e_start="54485" e_stop="54373"/>
          <exon e_start="51513" e_stop="51464"/>
          <exon e_start="51333" e_stop="51262"/>
          <exon e_start="50612" e_stop="50552"/>
          <exon e_start="50341" e_stop="50271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATG</genome_strand>
        <mrna_strand>GAATCACATTTTTGACTCAATCGGAAAGTAGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E288876" ref_strand="+" ref_description="SGN-E288876 [cLES-17-J20]">
      <seq>tcacatttttgactcaatcgaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaagagtgtcactgcatgctttttctgacccctgataatgattttgctggagaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="55536" stop="50256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55236" g_stop="55056" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55055" i_stop="54486" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54485" g_stop="54373" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="293" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54372" i_stop="51514" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51513" g_stop="51464" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="343" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51463" i_stop="51334" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51333" g_stop="51262" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="415" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51261" i_stop="50613" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50612" g_stop="50556" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="472" r_length="57" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E288876" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55236" e_stop="55056"/>
          <exon e_start="54485" e_stop="54373"/>
          <exon e_start="51513" e_stop="51464"/>
          <exon e_start="51333" e_stop="51262"/>
          <exon e_start="50612" e_stop="50556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGA</genome_strand>
        <mrna_strand>TCACATTTTTGACTCAATC-GAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E337540" ref_strand="+" ref_description="SGN-E337540 [cTOE-11-P6]">
      <seq>ccgtttattaatttattttaattataatttttcttcagatattaggtgaaaagaaaaggagagaacggatagtaatatataaatatcaacgctgtacgaaagagattttttcctttccgaagttgtggtggttaacagaatcacatttttgactcaatcggaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="55676" stop="50285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55376" g_stop="55056" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55055" i_stop="54486" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54485" g_stop="54373" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="434" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54372" i_stop="51514" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51513" g_stop="51464" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="484" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51463" i_stop="51334" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51333" g_stop="51262" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="556" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51261" i_stop="50613" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50612" g_stop="50585" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="584" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E337540" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55376" e_stop="55056"/>
          <exon e_start="54485" e_stop="54373"/>
          <exon e_start="51513" e_stop="51464"/>
          <exon e_start="51333" e_stop="51262"/>
          <exon e_start="50612" e_stop="50585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTTTATTAATTTATTTTAATTATAATTTTTCTTCAGATATTAGGTGAAAAGAAAAGGAGAGAACGGATAGTAATATATAAATATCAACGCTGTACGAAAGAGATTTTTTCCTTTCCGAAGTTGTGGTGGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTG</genome_strand>
        <mrna_strand>CCGTTTATTAATTTATTTTAATTATAATTTTTCTTCAGATATTAGGTGAAAAGAAAAGGAGAGAACGGATAGTAATATATAAATATCAACGCTGTACGAAAGAGATTTTTTCCTTTCCGAAGTTGTGGTGGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E296618" ref_strand="+" ref_description="SGN-E296618 [cLET-39-J10]">
      <seq>attttttcctttccgaagttgtggtggttaacagaatcacatttttgactcaatcggaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="55572" stop="50961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55272" g_stop="55056" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55055" i_stop="54486" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54485" g_stop="54373" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="330" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54372" i_stop="51514" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51513" g_stop="51464" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="380" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51463" i_stop="51334" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51333" g_stop="51262" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="452" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E296618" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55272" e_stop="55056"/>
          <exon e_start="54485" e_stop="54373"/>
          <exon e_start="51513" e_stop="51464"/>
          <exon e_start="51333" e_stop="51262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTTCCTTTCCGAAGTTGTGGTGGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG</genome_strand>
        <mrna_strand>ATTTTTTCCTTTCCGAAGTTGTGGTGGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E246889" ref_strand="+" ref_description="SGN-E246889 [cLEF-41-H15]">
      <seq>agaatcacatttttgactcaatcggaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="55540" stop="51002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55240" g_stop="55056" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55055" i_stop="54486" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54485" g_stop="54373" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="298" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54372" i_stop="51514" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51513" g_stop="51464" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="348" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51463" i_stop="51334" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51333" g_stop="51302" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="380" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E246889" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55240" e_stop="55056"/>
          <exon e_start="54485" e_stop="54373"/>
          <exon e_start="51513" e_stop="51464"/>
          <exon e_start="51333" e_stop="51302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGC</genome_strand>
        <mrna_strand>AGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284249" ref_strand="+" ref_description="SGN-E284249 [cLER-16-O24]">
      <seq>tttgactcaatcggaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="55529" stop="51008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55229" g_stop="55056" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55055" i_stop="54486" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54485" g_stop="54373" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="287" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54372" i_stop="51514" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51513" g_stop="51464" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="337" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51463" i_stop="51334" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51333" g_stop="51308" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="363" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E284249" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284249" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55229" e_stop="55056"/>
          <exon e_start="54485" e_stop="54373"/>
          <exon e_start="51513" e_stop="51464"/>
          <exon e_start="51333" e_stop="51308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAG</genome_strand>
        <mrna_strand>TTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E336569" ref_strand="+" ref_description="SGN-E336569 [cTOE-4-O13]">
      <seq>ccgtttattaatttattttaattataatttgtcttcagatattaggtgaaaagaaaaggagagaacggatagtaatatataaatatcaacgctgtacgaaagagattttttcctttccgaagttgtggtggttaacagaatcacatttttgactcaatcggaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcaaaaacatatttctgcatggacaaaggtgttacttcttgggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="55676" stop="51161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55376" g_stop="55056" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55055" i_stop="54486" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54485" g_stop="54373" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="434" r_length="113" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54372" i_stop="51514" i_length="2859">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51513" g_stop="51464" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="484" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51463" i_stop="51334" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51333" g_stop="51322" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="496" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E336569" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55376" e_stop="55056"/>
          <exon e_start="54485" e_stop="54373"/>
          <exon e_start="51513" e_stop="51464"/>
          <exon e_start="51333" e_stop="51322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTTTATTAATTTATTTTAATTATAATTTTTCTTCAGATATTAGGTGAAAAGAAAAGGAGAGAACGGATAGTAATATATAAATATCAACGCTGTACGAAAGAGATTTTTTCCTTTCCGAAGTTGTGGTGGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGA</genome_strand>
        <mrna_strand>CCGTTTATTAATTTATTTTAATTATAATTTGTCTTCAGATATTAGGTGAAAAGAAAAGGAGAGAACGGATAGTAATATATAAATATCAACGCTGTACGAAAGAGATTTTTTCCTTTCCGAAGTTGTGGTGGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAAAAACATATTTCTGCATGGACAAAGGTGTTACTTCTTGGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E332128" ref_strand="+" ref_description="SGN-E332128 [cTOD-16-O24]">
      <seq>ttttgaacgttaggatactccctcctaggctataaagtgagaatttatcgtatctgcttggaaactgtattgtcgttttactaactccaagataatggcattctgtatacttgaagtttaggacaagctgcaagtgtgtgatgtcatttcagttccaaaaagttgcttctatactatagctgcttgattattgttgaatagtattttgttgctcagaagttctactttggtcttattacctcataaaaaaaaaagtgatacctttggtttagagcttgaatagccaatcactttttcccaggtatccttcactttatatttcaggtttaggtgtgtgttcgtgtatcttctagaagcatatttctatgtaagttcgtgaaagtatgaatttaaaattgtggagctgtggaaactcttgaactgaggggatatcaattatcaaagacttataatgagagataaacaatagcacaaagctaattatataataaaggacagttatacaaggaatttttaacacaaagaagggaataagaattgagaaacttttaataatgtgagtacaagatttaccatctcataaacaagatagaagaatagattttatcatctcataaacaagatagaagaatagatttatctcaagtttcagagaatgtgactgtgacggagttaatagattgctaaatacaagccaatcacaaagatcaatccnacatgctgtccttctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="54207" stop="52875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53907" g_stop="53175" g_length="733"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="733" r_length="733" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E332128" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53907" e_stop="53175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTT</genome_strand>
        <mrna_strand>TTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCNACATGCTGTCCTTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E332165" ref_strand="+" ref_description="SGN-E332165 [cTOD-16-L23]">
      <seq>ttttgaacgttaggatactccctcctaggctataaagtgattatttatcgtatctgcttggaaactgtattgtcgttttactaactccaagataatggcattctgtatacttgaagtttaggacaagctgcaagtgtgtgatgtcatttcagttccaaaaagttgcttctatactatagctgcttgattattgttgaatagtattttgttgctcagaagttctactttggtcttattacctcataaaaaaaaaagtgatacctttggtttagagcttgaatagccaatcactttttcccaggtatccttcactttatatttcaggtttaggtgtgtgttcgtgtatcttctagaagcatatttctatgtaagttcgtgaaagtatgaatttaaaattgtggagctgtggaaactcttgaactgaggggatatcaattatcaaagacttataatgagagataaacaatagcacaaagctaattatataataaaggacagttatacaaggaatttttaacacaaagaagggaataagaattgagaaacttttaataatgtgagtacaagatttaccatctcataaacaagatagaagaatagattttatcatctcataaacaagatagaagaatagatttatctcaagtttcagagaatgtgactgtgacggagttaatagattgctaaatacaagccaatcacaaagatcaatccaacatgctgtcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="54207" stop="52881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53907" g_stop="53181" g_length="727"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="727" r_length="727" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E332165" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53907" e_stop="53181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCT</genome_strand>
        <mrna_strand>TTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGATTATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E297608" ref_strand="+" ref_description="SGN-E297608 [cLET-28-N4]">
      <seq>tgactcaatcggaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="55527" stop="54098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55227" g_stop="55056" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55055" i_stop="54486" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54485" g_stop="54398" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="260" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E297608" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>260</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297608" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55227" e_stop="55056"/>
          <exon e_start="54485" e_stop="54398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAA</genome_strand>
        <mrna_strand>TGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E306413" ref_strand="+" ref_description="SGN-E306413 [cLEX-13-H16]">
      <seq>atcaacgctgtacgaaagagattttttcctttccgaagttgtggtggttaacagaatcacatttttgactcaatcggaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="55592" stop="54101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55292" g_stop="55056" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55055" i_stop="54486" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54485" g_stop="54401" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="322" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E306413" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55292" e_stop="55056"/>
          <exon e_start="54485" e_stop="54401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAACGCTGTACGAAAGAGATTTTTTCCTTTCCGAAGTTGTGGTGGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGA</genome_strand>
        <mrna_strand>ATCAACGCTGTACGAAAGAGATTTTTTCCTTTCCGAAGTTGTGGTGGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E295179" ref_strand="+" ref_description="SGN-E295179 [cLET-20-L7]">
      <seq>taacagaatcacatttttgactcaatcggaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="55544" stop="54778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55244" g_stop="55078" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E295179" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>167</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55244" e_stop="55078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCAT</genome_strand>
        <mrna_strand>TAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E555478" ref_strand="+" ref_description="SGN-E555478 [cTSC-4-B17]">
      <seq>tttttcttatttttatgagaaagagagcttcaatctcaccctaatctgctggagaatcagctgaatttcgtcgattaatcacatttctgcttcaatattcatggcacctataaagggccttctttctctacaacgaactgcattagctcagcgttctagtgaaagatggggccaatatggtaggttatttagcactcaggctgcatcaactgctagcactccccaacctacacccccacccccacctcccgagaggactcactttggtggccttaaagatgaggatcgtattttcacaaatctctacggattgcatgacccttacctcaaaggtgccatgaagcgaggagattggtacagaacaaaagatcttgtcatcaagggttctgactggatcgtgaatgaaatgaagaaatctggtcttcgaggacgtggtggtgctggttttccatctggtctcaaatggtccttcatgccaaagacaacagatggccgtccttcatatcttgtcgtcaatgctgatgaaagtgaacctggaacctgtaaagacagggaaatcatgcggcatgacccacacaagttgttggaaggctgtctgattgcaggagtggggatgagagctagagctgcttatatttatatcaggggagagtatgtgaatgaaaggttgagccttcagaaggctagacaagaagcctatgaagctggattgttggggaaaaaaatgcttgtggatctggttatgattttgacgtatatattcattttggtgctggtgcctatatttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="58722" stop="61195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59022" g_stop="59124" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="60211" i_length="1087">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60212" g_stop="60895" g_length="684"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="789" r_length="686" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E555478" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59022" e_stop="59124"/>
          <exon e_start="60212" e_stop="60895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTTATTTTTATGAGAAAGAGAGCTTCAATCTCACCCTAATCTGCTGGAGAATCAGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATGGTAAGTCCCTATCTTCGATCTGTAATTTTTTTGCGCCACCAAAATACAAATGAAAATTTGTTGTGAGAATACGCCTTACGTGCATTTTGATGCGTCCTCGGTTTGTTCGTTGATTACTCTTTTGGTACTCTTCATAGGATATTTATTGCAAATTTATATTTTCAGAGATGTGGCTTAATTTTAACTGATTCGAATGGCCATGGTATTCCTAGAAAGATGAATGATGAGGAACCCTAAATTTTATTTGGCTAGCACATGTGGGTATTGCTTTTGATCTTTTTTGATTCCTGGATAAGTTATTCAGGAGAGGTGTTGCTTCATTGATCTGCTTTCGTTGAAAAAAAATGGGTTATTTTTTTAGATTGGAGTATGTTATAAGTTATGCAAGTTCATATTTTGAACCTAACCTCCTTATCAGAACTCTTTAATTCATAGACTCCGTAGCTTCTTTTCTTTGTTTGTGTGTGTTTTCAACTTTGTAATTTAGAATGAGTTATATGTATATAGATTAATAAGGAGTTAGTGTAGTCTTCCGCTGTACTTTGAATTAAGCTCTTTCAAGGTAAGCTTCTTTTTTCAGGGAAAGAAAACCTTCATACTCTATTACTTCGGAAGGCTTATGTATTTATTTTAGAGAGGTAGATGTAAATTAAATTAGTACCTAAACTTTGAAAACAGTTAGTTAGAGATGTTTTGCGTAAGTGTTTCCTCCCCTCCCCCACCCAGACATCAAAAGGAGGGTATTCTTTTTGTTTCTTCCCCTCTTGTGCAATTCCCTTAGCATCAGGTATTAACAATCTATTTTGGGAATAATTTTTTTGGAAATGTTACTGTTACTCTCTCGATCTTATGTTTCTATTCAATCAACTCTGCTTCGGTGAGTTTAGCAAAGTGTACCCCATCTAAAGCCTGGAAAAGAGTTGTGTTGTGGTTGGTCTCCTAGAAAAAGAGAGTATTTTGCAATCATGATGCATAGACCCATCGCTTAGTGCAGTATAATACAATCTTTTACCTTTGTAATTATGCTTGCTCAGTCTCGCCTCTTATGAGGCTAAAATTACTGATGTGTGGCATGTTCTTCTAACAGGCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGG--AAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGT</genome_strand>
        <mrna_strand>TTTTTCTTATTTTTATGAGAAAGAGAGCTTCAATCTCACCCTAATCTGCTGGAGAATCAGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E739436" ref_strand="+" ref_description="SGN-E739436 [LC17BG12]">
      <seq>gagggcagagcttcaatctcaccctaatctgctggagaatcagctgaatttcgtcgattaatcacatttctgcttcaatattcatggcacctataaagggccttctttctctacaacgaactgcattagctcagcgttctagtgaaagatggggccaatatggtaggttatttagcactcaggctgcatcaactgctagcactccccaacctacacccccacccccacctcccgagaggactcactttggtggccttaaagatgaggatcgtattttcacaaatctctacggattgcatgacccttacctcaaaggtgccatgaagcgaggagattggtacagaacaaaagatcttgtcatcaagggttctgactggatcgtgaatgaaatgaagaaatctggtcttcgaggacgtggtggtgctggttttccatctggtctcaaatggtccttcatgccaaagacaacagatggccgtccttcatatcttgtcgtcaatgctgatgaaagtgaacctggaacctgtaaagacagggaaatcatgcggcatgacccacacaagttgttggaaggctgtctgattgcaggagtggggatgagagctagagctgcttatatttatatcaggggagagtatgtgaatgaaaggttgagccttcagaaggctagacaagaagcctatgaagctggattgttggggaaaaatgcttgtggatctggttatgattttgacgtatatattcattttggtgctggtgcctatatttgtggtgaagagacagctcttctggagagccttgagggcaaacaaggcaaaccaagattgaagcctccatttccagctaatgcaggactatatggatgtccaacaactgttacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="58740" stop="61307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59038" g_stop="59124" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="60211" i_length="1087">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60212" g_stop="61007" g_length="796"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="882" r_length="796" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E739436" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>883</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59038" e_stop="59124"/>
          <exon e_start="60212" e_stop="61007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAGAGAGCTTCAATCTCACCCTAATCTGCTGGAGAATCAGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATGGTAAGTCCCTATCTTCGATCTGTAATTTTTTTGCGCCACCAAAATACAAATGAAAATTTGTTGTGAGAATACGCCTTACGTGCATTTTGATGCGTCCTCGGTTTGTTCGTTGATTACTCTTTTGGTACTCTTCATAGGATATTTATTGCAAATTTATATTTTCAGAGATGTGGCTTAATTTTAACTGATTCGAATGGCCATGGTATTCCTAGAAAGATGAATGATGAGGAACCCTAAATTTTATTTGGCTAGCACATGTGGGTATTGCTTTTGATCTTTTTTGATTCCTGGATAAGTTATTCAGGAGAGGTGTTGCTTCATTGATCTGCTTTCGTTGAAAAAAAATGGGTTATTTTTTTAGATTGGAGTATGTTATAAGTTATGCAAGTTCATATTTTGAACCTAACCTCCTTATCAGAACTCTTTAATTCATAGACTCCGTAGCTTCTTTTCTTTGTTTGTGTGTGTTTTCAACTTTGTAATTTAGAATGAGTTATATGTATATAGATTAATAAGGAGTTAGTGTAGTCTTCCGCTGTACTTTGAATTAAGCTCTTTCAAGGTAAGCTTCTTTTTTCAGGGAAAGAAAACCTTCATACTCTATTACTTCGGAAGGCTTATGTATTTATTTTAGAGAGGTAGATGTAAATTAAATTAGTACCTAAACTTTGAAAACAGTTAGTTAGAGATGTTTTGCGTAAGTGTTTCCTCCCCTCCCCCACCCAGACATCAAAAGGAGGGTATTCTTTTTGTTTCTTCCCCTCTTGTGCAATTCCCTTAGCATCAGGTATTAACAATCTATTTTGGGAATAATTTTTTTGGAAATGTTACTGTTACTCTCTCGATCTTATGTTTCTATTCAATCAACTCTGCTTCGGTGAGTTTAGCAAAGTGTACCCCATCTAAAGCCTGGAAAAGAGTTGTGTTGTGGTTGGTCTCCTAGAAAAAGAGAGTATTTTGCAATCATGATGCATAGACCCATCGCTTAGTGCAGTATAATACAATCTTTTACCTTTGTAATTATGCTTGCTCAGTCTCGCCTCTTATGAGGCTAAAATTACTGATGTGTGGCATGTTCTTCTAACAGGCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGTGGTGAAGAGACAGCTCTTCTGGAGAGCCTTGAGGGCAAACAAGGCAAACCAAGATTGAAGCCTCCATTTCCAGCTAATGCAGGACTATATGGATGTCCAACAACTGTTACAA</genome_strand>
        <mrna_strand>GAG-GGCAGAGCTTCAATCTCACCCTAATCTGCTGGAGAATCAGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGTGGTGAAGAGACAGCTCTTCTGGAGAGCCTTGAGGGCAAACAAGGCAAACCAAGATTGAAGCCTCCATTTCCAGCTAATGCAGGACTATATGGATGTCCAACAACTGTTACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E736642" ref_strand="+" ref_description="SGN-E736642 [LC06CD03]">
      <seq>gagggagagcttcaatctcaccctaatctgctggagaatcagctgaatttcgtcgattaatcacatttctgcttcaatattcatggcacctataaagggccttctttctctacaacgaactgcattagctcagcgttctagtgaaagatggggccaatatggtaggttatttagcactcaggctgcatcaactgctagcactccccaacctacacccccacccccacctcccgagaggactcactttggtggccttaaagatgaggatcgtattttcacaaatctctacggattgcatgacccttacctcaaaggtgccatgaagcgaggagattggtacagaacaaaagatcttgtcatcaagggttctgactggatcgtgaatgaaatgaagaaatctggtcttcgaggacgtggtggtgctggttttccatctggtctcaaatggtccttcatgccaaagacaacagatggccgtccttcatatcttgtcgtcaatgctgatgaaagtgaacctggaacctgtaaagacagggaaatcatgcggcatgacccacacaagttgttggaaggctgtctgattgcaggagtggggatgagagctagagctgcttatatttatatcaggggagagtatgtgaatgaaaggttgagccttcagaaggctagacaagaagcctatgaagctggattgttggggaaaaatgcttgtggatctggttatgattttgacgtatatattcattttggtgctggtgcctatatttgtggtgaagagacagctcttctggagagccttgagggcaaacaaggcaacccagattgaagcctccatttccagctaatgcaggactatatggatgtccaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="58740" stop="61296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59040" g_stop="59124" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="60211" i_length="1087">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60212" g_stop="60996" g_length="785"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="869" r_length="784" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E736642" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>870</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59040" e_stop="59124"/>
          <exon e_start="60212" e_stop="60996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAGAGCTTCAATCTCACCCTAATCTGCTGGAGAATCAGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATGGTAAGTCCCTATCTTCGATCTGTAATTTTTTTGCGCCACCAAAATACAAATGAAAATTTGTTGTGAGAATACGCCTTACGTGCATTTTGATGCGTCCTCGGTTTGTTCGTTGATTACTCTTTTGGTACTCTTCATAGGATATTTATTGCAAATTTATATTTTCAGAGATGTGGCTTAATTTTAACTGATTCGAATGGCCATGGTATTCCTAGAAAGATGAATGATGAGGAACCCTAAATTTTATTTGGCTAGCACATGTGGGTATTGCTTTTGATCTTTTTTGATTCCTGGATAAGTTATTCAGGAGAGGTGTTGCTTCATTGATCTGCTTTCGTTGAAAAAAAATGGGTTATTTTTTTAGATTGGAGTATGTTATAAGTTATGCAAGTTCATATTTTGAACCTAACCTCCTTATCAGAACTCTTTAATTCATAGACTCCGTAGCTTCTTTTCTTTGTTTGTGTGTGTTTTCAACTTTGTAATTTAGAATGAGTTATATGTATATAGATTAATAAGGAGTTAGTGTAGTCTTCCGCTGTACTTTGAATTAAGCTCTTTCAAGGTAAGCTTCTTTTTTCAGGGAAAGAAAACCTTCATACTCTATTACTTCGGAAGGCTTATGTATTTATTTTAGAGAGGTAGATGTAAATTAAATTAGTACCTAAACTTTGAAAACAGTTAGTTAGAGATGTTTTGCGTAAGTGTTTCCTCCCCTCCCCCACCCAGACATCAAAAGGAGGGTATTCTTTTTGTTTCTTCCCCTCTTGTGCAATTCCCTTAGCATCAGGTATTAACAATCTATTTTGGGAATAATTTTTTTGGAAATGTTACTGTTACTCTCTCGATCTTATGTTTCTATTCAATCAACTCTGCTTCGGTGAGTTTAGCAAAGTGTACCCCATCTAAAGCCTGGAAAAGAGTTGTGTTGTGGTTGGTCTCCTAGAAAAAGAGAGTATTTTGCAATCATGATGCATAGACCCATCGCTTAGTGCAGTATAATACAATCTTTTACCTTTGTAATTATGCTTGCTCAGTCTCGCCTCTTATGAGGCTAAAATTACTGATGTGTGGCATGTTCTTCTAACAGGCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGTGGTGAAGAGACAGCTCTTCTGGAGAGCCTTGAGGGCAAACAAGGCAAACCAAGATTGAAGCCTCCATTTCCAGCTAATGCAGGACTATATGGATGTCCAAC</genome_strand>
        <mrna_strand>GAGGGAGAGCTTCAATCTCACCCTAATCTGCTGGAGAATCAGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGTGGTGAAGAGACAGCTCTTCTGGAGAGCCTTGAGGGCAAACAAGGC-AACCCAGATTGAAGCCTCCATTTCCAGCTAATGCAGGACTATATGGATGTCCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E737554" ref_strand="+" ref_description="SGN-E737554 [LC10BC05]">
      <seq>gagggagagcttcaatctcaccctaatctgctggagaatcagctgaatttcgtcgattaatcacatttctgcttcaatattcatggcacctataaagggccttctttctctacaacgaactccataagctcagcgttctagtgaaagatggggccaatatggtaggttatttagcactcaggctgcatcaactgctagcactccccaacctacacccccacccccacctcccgagaggactcactttggtggccttaaagatgaggatcgtattttcacaaatctctacggattgcatgacccttacctcaaaggtgccatgaagcgaggagattggtacagaacaaaagatcttgtcatcaagggttctgactggatcgtgaatgaaatgaagaaatctggtcttcgaggacgtggtggtgctggttttccatctggtctcaaatggtccttcatgccaaagacaacagatggccgtccttcatatcttgtcgtcaatgctgatgaaagtgaacctggaacctgtaaagacagggaaatcatgcggcatgacccacacaagttgttggaaggctgtctgattgcaggagtggggatgagagctagagctgcttatatttatatcaggggagagtatgtgaatgaaaggttgagccttcagaaggctagacaagaagcctatgaagctggattgttggggaaaaatgcttgtggatctggttatgattttgacgtatatattcattttggtgctggtgcctatatttgtggtgaagagacagctcttctggagaagcttgagggcaaacaaggcaaaacaagattgaagcctccatttccagctaatgcaggactatatggatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="58740" stop="61291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59040" g_stop="59124" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="60211" i_length="1087">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60212" g_stop="60992" g_length="781"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="866" r_length="781" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E737554" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737554" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59040" e_stop="59124"/>
          <exon e_start="60212" e_stop="60992"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAGAGCTTCAATCTCACCCTAATCTGCTGGAGAATCAGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATGGTAAGTCCCTATCTTCGATCTGTAATTTTTTTGCGCCACCAAAATACAAATGAAAATTTGTTGTGAGAATACGCCTTACGTGCATTTTGATGCGTCCTCGGTTTGTTCGTTGATTACTCTTTTGGTACTCTTCATAGGATATTTATTGCAAATTTATATTTTCAGAGATGTGGCTTAATTTTAACTGATTCGAATGGCCATGGTATTCCTAGAAAGATGAATGATGAGGAACCCTAAATTTTATTTGGCTAGCACATGTGGGTATTGCTTTTGATCTTTTTTGATTCCTGGATAAGTTATTCAGGAGAGGTGTTGCTTCATTGATCTGCTTTCGTTGAAAAAAAATGGGTTATTTTTTTAGATTGGAGTATGTTATAAGTTATGCAAGTTCATATTTTGAACCTAACCTCCTTATCAGAACTCTTTAATTCATAGACTCCGTAGCTTCTTTTCTTTGTTTGTGTGTGTTTTCAACTTTGTAATTTAGAATGAGTTATATGTATATAGATTAATAAGGAGTTAGTGTAGTCTTCCGCTGTACTTTGAATTAAGCTCTTTCAAGGTAAGCTTCTTTTTTCAGGGAAAGAAAACCTTCATACTCTATTACTTCGGAAGGCTTATGTATTTATTTTAGAGAGGTAGATGTAAATTAAATTAGTACCTAAACTTTGAAAACAGTTAGTTAGAGATGTTTTGCGTAAGTGTTTCCTCCCCTCCCCCACCCAGACATCAAAAGGAGGGTATTCTTTTTGTTTCTTCCCCTCTTGTGCAATTCCCTTAGCATCAGGTATTAACAATCTATTTTGGGAATAATTTTTTTGGAAATGTTACTGTTACTCTCTCGATCTTATGTTTCTATTCAATCAACTCTGCTTCGGTGAGTTTAGCAAAGTGTACCCCATCTAAAGCCTGGAAAAGAGTTGTGTTGTGGTTGGTCTCCTAGAAAAAGAGAGTATTTTGCAATCATGATGCATAGACCCATCGCTTAGTGCAGTATAATACAATCTTTTACCTTTGTAATTATGCTTGCTCAGTCTCGCCTCTTATGAGGCTAAAATTACTGATGTGTGGCATGTTCTTCTAACAGGCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGTGGTGAAGAGACAGCTCTTCTGGAGAGCCTTGAGGGCAAACAAGGCAAACCAAGATTGAAGCCTCCATTTCCAGCTAATGCAGGACTATATGGATGTC</genome_strand>
        <mrna_strand>GAGGGAGAGCTTCAATCTCACCCTAATCTGCTGGAGAATCAGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTCCATAAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGTGGTGAAGAGACAGCTCTTCTGGAGAAGCTTGAGGGCAAACAAGGCAAAACAAGATTGAAGCCTCCATTTCCAGCTAATGCAGGACTATATGGATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E736236" ref_strand="+" ref_description="SGN-E736236 [LC04DE07]">
      <seq>gagggagagcttcaatctcaccctaatctgctggagaatcagctgaatttcgtcgattaatcacatttctgcttcaatattcatggcacctataaagggccttctttctctacaacgaactgcattagctcagcgttctagtgaaagatggggccaatatggtaggttatttagcactcaggctgcatcaactgctagcactccccaacctacacccccacccccacctcccgagaggactcactttggtggccttaaagatgaggatcgtattttcacaaatctctacggattgcatgacccttacctcaaaggtgccatgaagcgaggagattggtacagaacaaaagatcttgtcatcaagggttctgactggatcgtgaatgaaatgaagaaatctggtcttcgaggacgtggtggtgctggttttccatctggtctcaaatggtccttcatgccaaagacaacagatggccgtccttcatatcttgtcgtcaatgctgatgaaagtgaacctggaacctgtaaagacagggaaatcatgcggcatgacccacacaagttgttggaaggctgtctgattgcaggagtggggatgagagctagagctgcttatatttatatcaggggagagtatgtgaatgaaaggttgagccttcagaaggctagacaagaagcctatgaagctggattgttggggaaaaatgcttgtggatctggttatgattttgacgtatatattcattttggtgctggtgcctatatttgtggtgaagagacagctcttctggagagccttgagggcaaacaaggcaaaccaagattgaagcctccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="58740" stop="61263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59040" g_stop="59124" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="60211" i_length="1087">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60212" g_stop="60963" g_length="752"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="837" r_length="752" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E736236" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>837</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59040" e_stop="59124"/>
          <exon e_start="60212" e_stop="60963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAGAGCTTCAATCTCACCCTAATCTGCTGGAGAATCAGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATGGTAAGTCCCTATCTTCGATCTGTAATTTTTTTGCGCCACCAAAATACAAATGAAAATTTGTTGTGAGAATACGCCTTACGTGCATTTTGATGCGTCCTCGGTTTGTTCGTTGATTACTCTTTTGGTACTCTTCATAGGATATTTATTGCAAATTTATATTTTCAGAGATGTGGCTTAATTTTAACTGATTCGAATGGCCATGGTATTCCTAGAAAGATGAATGATGAGGAACCCTAAATTTTATTTGGCTAGCACATGTGGGTATTGCTTTTGATCTTTTTTGATTCCTGGATAAGTTATTCAGGAGAGGTGTTGCTTCATTGATCTGCTTTCGTTGAAAAAAAATGGGTTATTTTTTTAGATTGGAGTATGTTATAAGTTATGCAAGTTCATATTTTGAACCTAACCTCCTTATCAGAACTCTTTAATTCATAGACTCCGTAGCTTCTTTTCTTTGTTTGTGTGTGTTTTCAACTTTGTAATTTAGAATGAGTTATATGTATATAGATTAATAAGGAGTTAGTGTAGTCTTCCGCTGTACTTTGAATTAAGCTCTTTCAAGGTAAGCTTCTTTTTTCAGGGAAAGAAAACCTTCATACTCTATTACTTCGGAAGGCTTATGTATTTATTTTAGAGAGGTAGATGTAAATTAAATTAGTACCTAAACTTTGAAAACAGTTAGTTAGAGATGTTTTGCGTAAGTGTTTCCTCCCCTCCCCCACCCAGACATCAAAAGGAGGGTATTCTTTTTGTTTCTTCCCCTCTTGTGCAATTCCCTTAGCATCAGGTATTAACAATCTATTTTGGGAATAATTTTTTTGGAAATGTTACTGTTACTCTCTCGATCTTATGTTTCTATTCAATCAACTCTGCTTCGGTGAGTTTAGCAAAGTGTACCCCATCTAAAGCCTGGAAAAGAGTTGTGTTGTGGTTGGTCTCCTAGAAAAAGAGAGTATTTTGCAATCATGATGCATAGACCCATCGCTTAGTGCAGTATAATACAATCTTTTACCTTTGTAATTATGCTTGCTCAGTCTCGCCTCTTATGAGGCTAAAATTACTGATGTGTGGCATGTTCTTCTAACAGGCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGTGGTGAAGAGACAGCTCTTCTGGAGAGCCTTGAGGGCAAACAAGGCAAACCAAGATTGAAGCCTCCATT</genome_strand>
        <mrna_strand>GAGGGAGAGCTTCAATCTCACCCTAATCTGCTGGAGAATCAGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGTGGTGAAGAGACAGCTCTTCTGGAGAGCCTTGAGGGCAAACAAGGCAAACCAAGATTGAAGCCTCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E736700" ref_strand="+" ref_description="SGN-E736700 [LC06DD02]">
      <seq>gaggcagagcttcaatctcaccctaatctgctggagaatcagctgaatttcgtcgattaatcacatttctgcttcaatattcatggcacctataaagggccttctttctctacaacgaactgcattagctcagcgttctagtgaaagatggggccaatatggtaggttatttagcactcaggctgcatcaactgctagcactccccaacctacacccccacccccacctcccgagaggactcactttggtggccttaaagatgaggatcgtattttcacaaatctctacggattgcatgacccttacctcaaaggtgccatgaagcgaggagattggtacagaacaaaagatcttgtcatcaagggttctgactggatcgtgaatgaaatgaagaaatctggtcttcgaggacgtggtggtgctggttttccatctggtctcaaatggtccttcatgccaaagacaacagatggccgtccttcatatcttgtcgtcaatgctgatgaaagtgaacctggaacctgtaaagacagggaaatcatgcggcatgacccacacaagttgttggaaggctgtctgattgcaggagtggggatgagagctagagctgcttatatttatatcaggggagagtatgtgaatgaaaggttgagccttcagaaggctagacaagaagcctatgaagctggattgttggggaaaaatgcttgtggatctggttatgattttgacgtatatattcattttggtgctggtgcctatatttgtggtgaagagacagctcttctggagagccttgagggcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="58742" stop="61233"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59040" g_stop="59124" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="60211" i_length="1087">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60212" g_stop="60933" g_length="722"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="807" r_length="722" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E736700" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59040" e_stop="59124"/>
          <exon e_start="60212" e_stop="60933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAGAGCTTCAATCTCACCCTAATCTGCTGGAGAATCAGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATGGTAAGTCCCTATCTTCGATCTGTAATTTTTTTGCGCCACCAAAATACAAATGAAAATTTGTTGTGAGAATACGCCTTACGTGCATTTTGATGCGTCCTCGGTTTGTTCGTTGATTACTCTTTTGGTACTCTTCATAGGATATTTATTGCAAATTTATATTTTCAGAGATGTGGCTTAATTTTAACTGATTCGAATGGCCATGGTATTCCTAGAAAGATGAATGATGAGGAACCCTAAATTTTATTTGGCTAGCACATGTGGGTATTGCTTTTGATCTTTTTTGATTCCTGGATAAGTTATTCAGGAGAGGTGTTGCTTCATTGATCTGCTTTCGTTGAAAAAAAATGGGTTATTTTTTTAGATTGGAGTATGTTATAAGTTATGCAAGTTCATATTTTGAACCTAACCTCCTTATCAGAACTCTTTAATTCATAGACTCCGTAGCTTCTTTTCTTTGTTTGTGTGTGTTTTCAACTTTGTAATTTAGAATGAGTTATATGTATATAGATTAATAAGGAGTTAGTGTAGTCTTCCGCTGTACTTTGAATTAAGCTCTTTCAAGGTAAGCTTCTTTTTTCAGGGAAAGAAAACCTTCATACTCTATTACTTCGGAAGGCTTATGTATTTATTTTAGAGAGGTAGATGTAAATTAAATTAGTACCTAAACTTTGAAAACAGTTAGTTAGAGATGTTTTGCGTAAGTGTTTCCTCCCCTCCCCCACCCAGACATCAAAAGGAGGGTATTCTTTTTGTTTCTTCCCCTCTTGTGCAATTCCCTTAGCATCAGGTATTAACAATCTATTTTGGGAATAATTTTTTTGGAAATGTTACTGTTACTCTCTCGATCTTATGTTTCTATTCAATCAACTCTGCTTCGGTGAGTTTAGCAAAGTGTACCCCATCTAAAGCCTGGAAAAGAGTTGTGTTGTGGTTGGTCTCCTAGAAAAAGAGAGTATTTTGCAATCATGATGCATAGACCCATCGCTTAGTGCAGTATAATACAATCTTTTACCTTTGTAATTATGCTTGCTCAGTCTCGCCTCTTATGAGGCTAAAATTACTGATGTGTGGCATGTTCTTCTAACAGGCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGTGGTGAAGAGACAGCTCTTCTGGAGAGCCTTGAGGGCAA</genome_strand>
        <mrna_strand>GAGGCAGAGCTTCAATCTCACCCTAATCTGCTGGAGAATCAGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGTGGTGAAGAGACAGCTCTTCTGGAGAGCCTTGAGGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E624666" ref_strand="+" ref_description="SGN-E624666 [GI|639833]">
      <seq>cagcttcaatctcaccctaatctgctggagaatcagctgaatttcaccgattcatcacatttctgcttcaatattcatggcacctataaagggccttctttctctgcaacggactgcattagctcaacgttctagtgaaagatggggcctatatggtaggttatttagcactcaggctgcatcaactgctagcactccccaacctacacccccacccccacctcccgagaggactcactttggtggccttaaagatgaggatcgtattttcacaaatctctacggattgcatgacccttacctcaaaggtgccatgaagcgaggagattggtacagaacaaaagatcttgtcatcaagggttctgactggatcgtgaatgaaatgaagaaatctggtcttcgaggacgtggtggtgctggttttccatctggtctcaaatggtccttcatgccaaagacaacagatggccgtccttcatatcttgtcgtcaatgctgatgaaagtgaacctggaacctgtaaagacagggaaatcatgcggcatgacccacacaagttgttggaaggctgtctgattgcaggagtggggatgagggctaaagctgcttatatttatatcaggggagagtatgtgaatgaaaggaagagccttcagaaggctagacaagaagcctatgaagctggattgttggggaaaaatgcttgtggatctggttatgattttgacgtatatattcattttggtgctggtgcctatatttgtggtgaagagacagctcttctggagagccttgagggcaaacaaggcaaaccaagattgaagcctccatttccagctaatgcaggactatatggatgtccaacaactgtcacaaatgttgaaacagtagctgtttcaccaaccatcttaaggcgtgggccggagtggtttgctagttttggccggaagaataatgccgggacaaagctgttttgcatctcaggccatgttaacaagccctgcacagttgaagaggaaatgagtatttcattgaaggagctgatagagaggcactgtggtggtgttcgtggaggatgggacaatttgcttgctgttataccaggaggttcatctgttccattgcttcccaagaacatatgtgaggatgtacttatggattttgatgcactcaaagctgtgcagtcagggttggggactgctgctgtaattgtcatggacaagtcaactgatgttgtagatgcaattgcaaggctctcgtacttctataagcacgagagctgtggtcaatgtacaccatgtagggaaggcacagggtggctttggatgatcatggaaagaatgaaggttggcaatgcaaagttggaagagattgacatgctccaagaggtgacaaaacagattgaagggcataccatttgtgccttgggtgacgctgctgcttggccagtgcagggtcttattaggcactttagaccagagctagaaaggaggatcagggagcacgcagagagagagctacaacaggcggctgctgcttgatttttttaaaagtttgctgtttgataccatggaataaattttgagaagtaccagaagtatgaatgtgggaggggaaagcaggacgcagagcttccctatatccagcctctttttattgtcaaacttgtgtaaaactattgttacattgttggcccaatgggtaatttatgtttcagagctggtacatctaatgtcttaatgtttccttacattatcattgtcatggctttgatagttgaaagatgctttaatatttgtcatgttgaataagagctacactttggcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="58747" stop="63193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59046" g_stop="59124" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="60211" i_length="1087">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.983" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60212" g_stop="61684" g_length="1473"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="1552" r_length="1473" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61685" i_stop="62633" i_length="949">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.424" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62634" g_stop="62914" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1553" r_stop="1827" r_length="275" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E624666" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>1833</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E624666" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59046" e_stop="59124"/>
          <exon e_start="60212" e_stop="61684"/>
          <exon e_start="62634" e_stop="62914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTTCAATCTCACCCTAATCTGCTGGAGAATCAGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATGGTAAGTCCCTATCTTCGATCTGTAATTTTTTTGCGCCACCAAAATACAAATGAAAATTTGTTGTGAGAATACGCCTTACGTGCATTTTGATGCGTCCTCGGTTTGTTCGTTGATTACTCTTTTGGTACTCTTCATAGGATATTTATTGCAAATTTATATTTTCAGAGATGTGGCTTAATTTTAACTGATTCGAATGGCCATGGTATTCCTAGAAAGATGAATGATGAGGAACCCTAAATTTTATTTGGCTAGCACATGTGGGTATTGCTTTTGATCTTTTTTGATTCCTGGATAAGTTATTCAGGAGAGGTGTTGCTTCATTGATCTGCTTTCGTTGAAAAAAAATGGGTTATTTTTTTAGATTGGAGTATGTTATAAGTTATGCAAGTTCATATTTTGAACCTAACCTCCTTATCAGAACTCTTTAATTCATAGACTCCGTAGCTTCTTTTCTTTGTTTGTGTGTGTTTTCAACTTTGTAATTTAGAATGAGTTATATGTATATAGATTAATAAGGAGTTAGTGTAGTCTTCCGCTGTACTTTGAATTAAGCTCTTTCAAGGTAAGCTTCTTTTTTCAGGGAAAGAAAACCTTCATACTCTATTACTTCGGAAGGCTTATGTATTTATTTTAGAGAGGTAGATGTAAATTAAATTAGTACCTAAACTTTGAAAACAGTTAGTTAGAGATGTTTTGCGTAAGTGTTTCCTCCCCTCCCCCACCCAGACATCAAAAGGAGGGTATTCTTTTTGTTTCTTCCCCTCTTGTGCAATTCCCTTAGCATCAGGTATTAACAATCTATTTTGGGAATAATTTTTTTGGAAATGTTACTGTTACTCTCTCGATCTTATGTTTCTATTCAATCAACTCTGCTTCGGTGAGTTTAGCAAAGTGTACCCCATCTAAAGCCTGGAAAAGAGTTGTGTTGTGGTTGGTCTCCTAGAAAAAGAGAGTATTTTGCAATCATGATGCATAGACCCATCGCTTAGTGCAGTATAATACAATCTTTTACCTTTGTAATTATGCTTGCTCAGTCTCGCCTCTTATGAGGCTAAAATTACTGATGTGTGGCATGTTCTTCTAACAGGCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGTGGTGAAGAGACAGCTCTTCTGGAGAGCCTTGAGGGCAAACAAGGCAAACCAAGATTGAAGCCTCCATTTCCAGCTAATGCAGGACTATATGGATGTCCAACAACTGTTACAAATGTTGAAACAGTAGCTGTTTCACCAACCATCTTAAGGCGTGGTCCAGAGTGGTTTGCTAGTTTTGGCCGGAAGAATAATGCCGGGACAAAGCTGTTTTGCATCTCAGGCCATGTTAACAAGCCCTGTACAGTTGAAGAGGAAATGAGTATTTCATTGAAGGAGCTGCTAGAGAGGCACTGTGGTGGTGTGCGTGGAGGATGGGACAATTTGCTTGCTGTTATACCAGGAGGTTCATCTGTTCCACTGCTTCCCAAGAACATATGTGAGGATGTACTTATGGATTTTGATGCACTCAAAGCTGTGCAGTCAGGGTTGGGAACTGCTGCTGTAATTGTCATGGACAAGTCAACTGATGTTGTAGATGCAATTGCAAGGCTCTCGTACTTCTACAAGCACGAGAGTTGTGGTCAATGTACACCATGTAGGGAAGGCACAGGATGGCTTTGGATGATCATGGAAAGAATGAAGGTTGGCAATGCAAAGTTGGAAGAGATTGACATGCTCCAAGAGGTGACAAAACAGATTGAAGGGCACACTATTTGTGCCTTGGGTGACGCTGCTGCTTGGCCAGTACAGGGTCTTATTAGGCACTTTAGACCAGAGCTAGAAAGGAGGATCAGGGAGCATGCAGAGAGGGAGCTACAACAGGCAGCTGCTGCTTGATTCTTTTATGAGGTTGGTTCTTAAACTTTTGTTACATTTACATTGTAGTGTTTGATACTTGATAGTAACCATGAATCATCATCTTAATAAAACATTCATCTAAAAATTCGTTGCATGCTGTAAACTTTAATAAAGTGAAATTGGTTTCCAAACTCTTTCTAGTTCCCTTTTTTTGTTCGGATAATGGGTCTTTTTTTATCCTCTTGTTGTTTGGATTATCAAAGATCATAGTAACATGTACAAAATACTCCAAGCCCAAGGTACACCTCTCAGGAACTTTATCTCCTGCCCTTTTGTAATACTGCTGACCTCTCGCTAGGTCAATGCAACTTCAATTATTTCTGTCATGACAAAGAATTACCAAAATTTCCTTCCAACCGGACTCTTCTTTTGACCAATATAGGAGAAACCAAAAAAAAAAAAAAAAAAGAAAGGAGCAGGAACAGTCATAAAACTGGCGACTTTAGTGGATGTTGCATGACAACCCTGTGCATGGGAATGTGTTCTTTGATCACTGAAATTGAGGGACACGGCTCTCCAAAAATTAAGAAATTAATGAAAAAAAGCTTGAAAGGTGTGCCTGTAGTTATAATCTAATTGAATATAGCAAAATGATCTAAACAGCTCTGTGATCTTCAACATTTTGCATATTCCATCTTCATGTATGAAGTTAAATATACTTGTCAATAGTCATCCTATTGAATTGCTACACAGAGTCTCTGTAACCAGCCCTGCCTTTGACAAATTTAAGCACTGATGTCTAATCTTGAAGCATACCGACTTCACCACTCTGATCATTGTTGGTACAATGCTATAATAGATTGATTCCTCCCCACCACCCCTGCCTTCCCTATTGGTCATGTCCCTCAAATATTGATTTTCATACTTGCTGAATAATTAAATTACTTGTATGTATCACGGCATGGCTATTTCATAATCGTTTCATGTCTCTGCCTTTCAGTTTGCTGTTTGATACCATGGGAATAAATTTTGAGAAGTACCAGAAGTATGAATGTGGGAGGGGAAAGCAGGACGCAGAGCTTCCCTATATCCAGCCACTTTTTATTATCAAACTTGTGTAGAACTATTGTTACATTGTTGGCCCAATGGGTAATTTATGTTTCAGAGCTGGTACATCTAATGTCTTAATGTTTCCTTACATTATCATTGCCATGGTTTTGGTAGTTGAAAGATGCTTTAATATTTGTCATGTTGCGTTAAATAAGATCTACACTTTGGCAA</genome_strand>
        <mrna_strand>CAGCTTCAATCTCACCCTAATCTGCTGGAGAATCAGCTGAATTTCACCGATTCATCACATTTCTGCTTCAATATTCATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCTATAAAGGGCCTTCTTTCTCTGCAACGGACTGCATTAGCTCAACGTTCTAGTGAAAGATGGGGCCTATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGGGCTAAAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGAAGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGTGGTGAAGAGACAGCTCTTCTGGAGAGCCTTGAGGGCAAACAAGGCAAACCAAGATTGAAGCCTCCATTTCCAGCTAATGCAGGACTATATGGATGTCCAACAACTGTCACAAATGTTGAAACAGTAGCTGTTTCACCAACCATCTTAAGGCGTGGGCCGGAGTGGTTTGCTAGTTTTGGCCGGAAGAATAATGCCGGGACAAAGCTGTTTTGCATCTCAGGCCATGTTAACAAGCCCTGCACAGTTGAAGAGGAAATGAGTATTTCATTGAAGGAGCTGATAGAGAGGCACTGTGGTGGTGTTCGTGGAGGATGGGACAATTTGCTTGCTGTTATACCAGGAGGTTCATCTGTTCCATTGCTTCCCAAGAACATATGTGAGGATGTACTTATGGATTTTGATGCACTCAAAGCTGTGCAGTCAGGGTTGGGGACTGCTGCTGTAATTGTCATGGACAAGTCAACTGATGTTGTAGATGCAATTGCAAGGCTCTCGTACTTCTATAAGCACGAGAGCTGTGGTCAATGTACACCATGTAGGGAAGGCACAGGGTGGCTTTGGATGATCATGGAAAGAATGAAGGTTGGCAATGCAAAGTTGGAAGAGATTGACATGCTCCAAGAGGTGACAAAACAGATTGAAGGGCATACCATTTGTGCCTTGGGTGACGCTGCTGCTTGGCCAGTGCAGGGTCTTATTAGGCACTTTAGACCAGAGCTAGAAAGGAGGATCAGGGAGCACGCAGAGAGAGAGCTACAACAGGCGGCTGCTGCTTGATTTTTTTAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCTGTTTGATACCAT-GGAATAAATTTTGAGAAGTACCAGAAGTATGAATGTGGGAGGGGAAAGCAGGACGCAGAGCTTCCCTATATCCAGCCTCTTTTTATTGTCAAACTTGTGTAAAACTATTGTTACATTGTTGGCCCAATGGGTAATTTATGTTTCAGAGCTGGTACATCTAATGTCTTAATGTTTCCTTACATTATCATTGTCATGGCTTTGATAGTTGAAAGATGCTTTAATATTTGTCATGTT--G---AATAAGAGCTACACTTTGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E339468" ref_strand="+" ref_description="SGN-E339468 [cTOF-4-H14]">
      <seq>ttcaatctcaccctaatctgctggagaatcagctgaatttcgtcgattaatcacatttctgcttcaatattcatggcacctataaagggccttctttctctacaacgaactgcattagctcagcgttctagtgaaagatggggccaatatggtaggttatttagcactcaggctgcatcaactgctagcactccccaacctacacccccacccccacctcccgagaggactcactttggtggccttaaagatgaggatcgtattttcacaaatctctacggattgcatgacccttacctcaaaggtgccatgaagcgaggagattggtacagaacaaaagatcttgtcatcaagggttctgactggatcgtgaatgaaatgaagaaatctggtcttcgaggacgtggtggtgctggttttccatctggtctcaaatggtccttcatgccaaagacaacagatggccgtccttcatatcttgtcgtcaatgctgatgaaagtgaacctggaacctgtaaagacagggaaatcatgcggcatgacccacacaagttgttggaaggctgtctgattgcaggagtggggatgagagctagagctgcttatatttatatcaggggagagtatgtgaatgaaaggttgagccttcagaaggctagacaagaagcctatgaagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="58750" stop="61115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59050" g_stop="59124" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="60211" i_length="1087">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60212" g_stop="60815" g_length="604"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="679" r_length="604" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E339468" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59050" e_stop="59124"/>
          <exon e_start="60212" e_stop="60815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATCTCACCCTAATCTGCTGGAGAATCAGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATGGTAAGTCCCTATCTTCGATCTGTAATTTTTTTGCGCCACCAAAATACAAATGAAAATTTGTTGTGAGAATACGCCTTACGTGCATTTTGATGCGTCCTCGGTTTGTTCGTTGATTACTCTTTTGGTACTCTTCATAGGATATTTATTGCAAATTTATATTTTCAGAGATGTGGCTTAATTTTAACTGATTCGAATGGCCATGGTATTCCTAGAAAGATGAATGATGAGGAACCCTAAATTTTATTTGGCTAGCACATGTGGGTATTGCTTTTGATCTTTTTTGATTCCTGGATAAGTTATTCAGGAGAGGTGTTGCTTCATTGATCTGCTTTCGTTGAAAAAAAATGGGTTATTTTTTTAGATTGGAGTATGTTATAAGTTATGCAAGTTCATATTTTGAACCTAACCTCCTTATCAGAACTCTTTAATTCATAGACTCCGTAGCTTCTTTTCTTTGTTTGTGTGTGTTTTCAACTTTGTAATTTAGAATGAGTTATATGTATATAGATTAATAAGGAGTTAGTGTAGTCTTCCGCTGTACTTTGAATTAAGCTCTTTCAAGGTAAGCTTCTTTTTTCAGGGAAAGAAAACCTTCATACTCTATTACTTCGGAAGGCTTATGTATTTATTTTAGAGAGGTAGATGTAAATTAAATTAGTACCTAAACTTTGAAAACAGTTAGTTAGAGATGTTTTGCGTAAGTGTTTCCTCCCCTCCCCCACCCAGACATCAAAAGGAGGGTATTCTTTTTGTTTCTTCCCCTCTTGTGCAATTCCCTTAGCATCAGGTATTAACAATCTATTTTGGGAATAATTTTTTTGGAAATGTTACTGTTACTCTCTCGATCTTATGTTTCTATTCAATCAACTCTGCTTCGGTGAGTTTAGCAAAGTGTACCCCATCTAAAGCCTGGAAAAGAGTTGTGTTGTGGTTGGTCTCCTAGAAAAAGAGAGTATTTTGCAATCATGATGCATAGACCCATCGCTTAGTGCAGTATAATACAATCTTTTACCTTTGTAATTATGCTTGCTCAGTCTCGCCTCTTATGAGGCTAAAATTACTGATGTGTGGCATGTTCTTCTAACAGGCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTG</genome_strand>
        <mrna_strand>TTCAATCTCACCCTAATCTGCTGGAGAATCAGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E444613" ref_strand="+" ref_description="SGN-E444613 [cSTA-43-H21]">
      <seq>tctcaccctaatctgctggagaatcagctgaatttcaccgattcatcacatttctgcttcaatattcatggcacctataaagggccttctttctctgcaacggactgcattagctcaacgttctagtgaaagatggggcctatatggtaggttatttagcactcaggctgcatcaactgctagcactccccaacctacacccccacccccacctcccgagaggactcactttggtggccttaaagatgaggatcgtattttcacaaatctctacggattgcatgacccttacctcaaaggtgccatgaagcgaggagattggtacagaacaaaagatcttgtcatcaagggttctgactggatcgtgaatgaaatgaagaaatctggtcttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="58755" stop="60834"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59055" g_stop="59124" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="60211" i_length="1087">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.983" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60212" g_stop="60534" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="393" r_length="323" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E444613" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E444613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59055" e_stop="59124"/>
          <exon e_start="60212" e_stop="60534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCACCCTAATCTGCTGGAGAATCAGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATGGTAAGTCCCTATCTTCGATCTGTAATTTTTTTGCGCCACCAAAATACAAATGAAAATTTGTTGTGAGAATACGCCTTACGTGCATTTTGATGCGTCCTCGGTTTGTTCGTTGATTACTCTTTTGGTACTCTTCATAGGATATTTATTGCAAATTTATATTTTCAGAGATGTGGCTTAATTTTAACTGATTCGAATGGCCATGGTATTCCTAGAAAGATGAATGATGAGGAACCCTAAATTTTATTTGGCTAGCACATGTGGGTATTGCTTTTGATCTTTTTTGATTCCTGGATAAGTTATTCAGGAGAGGTGTTGCTTCATTGATCTGCTTTCGTTGAAAAAAAATGGGTTATTTTTTTAGATTGGAGTATGTTATAAGTTATGCAAGTTCATATTTTGAACCTAACCTCCTTATCAGAACTCTTTAATTCATAGACTCCGTAGCTTCTTTTCTTTGTTTGTGTGTGTTTTCAACTTTGTAATTTAGAATGAGTTATATGTATATAGATTAATAAGGAGTTAGTGTAGTCTTCCGCTGTACTTTGAATTAAGCTCTTTCAAGGTAAGCTTCTTTTTTCAGGGAAAGAAAACCTTCATACTCTATTACTTCGGAAGGCTTATGTATTTATTTTAGAGAGGTAGATGTAAATTAAATTAGTACCTAAACTTTGAAAACAGTTAGTTAGAGATGTTTTGCGTAAGTGTTTCCTCCCCTCCCCCACCCAGACATCAAAAGGAGGGTATTCTTTTTGTTTCTTCCCCTCTTGTGCAATTCCCTTAGCATCAGGTATTAACAATCTATTTTGGGAATAATTTTTTTGGAAATGTTACTGTTACTCTCTCGATCTTATGTTTCTATTCAATCAACTCTGCTTCGGTGAGTTTAGCAAAGTGTACCCCATCTAAAGCCTGGAAAAGAGTTGTGTTGTGGTTGGTCTCCTAGAAAAAGAGAGTATTTTGCAATCATGATGCATAGACCCATCGCTTAGTGCAGTATAATACAATCTTTTACCTTTGTAATTATGCTTGCTCAGTCTCGCCTCTTATGAGGCTAAAATTACTGATGTGTGGCATGTTCTTCTAACAGGCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCG</genome_strand>
        <mrna_strand>TCTCACCCTAATCTGCTGGAGAATCAGCTGAATTTCACCGATTCATCACATTTCTGCTTCAATATTCATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCTATAAAGGGCCTTCTTTCTCTGCAACGGACTGCATTAGCTCAACGTTCTAGTGAAAGATGGGGCCTATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E335923" ref_strand="+" ref_description="SGN-E335923 [cTOE-6-G19]">
      <seq>tcaccctaatctgctggagaatcagctggatttcgtcgattaatcacatttctgcttcaatattcatggcacctataaagggccttctttctctacaacgaactgcattagctcagcgttctagtgaaagatggggccaatatggtaggttatttagcactcaggctgcatcaactgctagcactccccaacctacacccccacccccacctcccgagaggactcactttggtggccttaaagatgacgatcggatcttcacaaatctctacggattgcatgacccttacctcaaaagtgccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="58757" stop="60748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59057" g_stop="59124" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="60211" i_length="1087">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60212" g_stop="60448" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="305" r_length="237" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E335923" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>305</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335923" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59057" e_stop="59124"/>
          <exon e_start="60212" e_stop="60448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCCTAATCTGCTGGAGAATCAGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATGGTAAGTCCCTATCTTCGATCTGTAATTTTTTTGCGCCACCAAAATACAAATGAAAATTTGTTGTGAGAATACGCCTTACGTGCATTTTGATGCGTCCTCGGTTTGTTCGTTGATTACTCTTTTGGTACTCTTCATAGGATATTTATTGCAAATTTATATTTTCAGAGATGTGGCTTAATTTTAACTGATTCGAATGGCCATGGTATTCCTAGAAAGATGAATGATGAGGAACCCTAAATTTTATTTGGCTAGCACATGTGGGTATTGCTTTTGATCTTTTTTGATTCCTGGATAAGTTATTCAGGAGAGGTGTTGCTTCATTGATCTGCTTTCGTTGAAAAAAAATGGGTTATTTTTTTAGATTGGAGTATGTTATAAGTTATGCAAGTTCATATTTTGAACCTAACCTCCTTATCAGAACTCTTTAATTCATAGACTCCGTAGCTTCTTTTCTTTGTTTGTGTGTGTTTTCAACTTTGTAATTTAGAATGAGTTATATGTATATAGATTAATAAGGAGTTAGTGTAGTCTTCCGCTGTACTTTGAATTAAGCTCTTTCAAGGTAAGCTTCTTTTTTCAGGGAAAGAAAACCTTCATACTCTATTACTTCGGAAGGCTTATGTATTTATTTTAGAGAGGTAGATGTAAATTAAATTAGTACCTAAACTTTGAAAACAGTTAGTTAGAGATGTTTTGCGTAAGTGTTTCCTCCCCTCCCCCACCCAGACATCAAAAGGAGGGTATTCTTTTTGTTTCTTCCCCTCTTGTGCAATTCCCTTAGCATCAGGTATTAACAATCTATTTTGGGAATAATTTTTTTGGAAATGTTACTGTTACTCTCTCGATCTTATGTTTCTATTCAATCAACTCTGCTTCGGTGAGTTTAGCAAAGTGTACCCCATCTAAAGCCTGGAAAAGAGTTGTGTTGTGGTTGGTCTCCTAGAAAAAGAGAGTATTTTGCAATCATGATGCATAGACCCATCGCTTAGTGCAGTATAATACAATCTTTTACCTTTGTAATTATGCTTGCTCAGTCTCGCCTCTTATGAGGCTAAAATTACTGATGTGTGGCATGTTCTTCTAACAGGCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATG</genome_strand>
        <mrna_strand>TCACCCTAATCTGCTGGAGAATCAGCTGGATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGACGATCGGATCTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAAGTGCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E323796" ref_strand="+" ref_description="SGN-E323796 [cTOC-5-H20]">
      <seq>cctaatctgctggagaatcagctgaatttcgtcgattaatcacatttctgcttcaatattcatggcacctataaagggccttctttctctacaacgaactgcattagctcagcgttctagtgaaagatggggccaatatggtaggttatttagcactcaggctgcatcaactgctagcactccccaacctacacccccacccccacctcccgagaggactcactttggtggccttaaagatgaggatcgtattttcacaaatctctacggattgcatgacccttacctcaaaggtgccatgaagcgaggagattggtacacaacaaaagatcttgtcatcaagggttctgactggatcgtgaatgaaatgaagaaatctggtcttcgaggacgtggtggtgctggttttccatctggtctcaaatggtccttcatgccaaagacaacagatggccgnccttcatatcttgtcgtcaatgctgatgaaagtgaacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="58761" stop="60944"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59061" g_stop="59124" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="60211" i_length="1087">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60212" g_stop="60644" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="497" r_length="433" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E323796" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59061" e_stop="59124"/>
          <exon e_start="60212" e_stop="60644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAATCTGCTGGAGAATCAGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATGGTAAGTCCCTATCTTCGATCTGTAATTTTTTTGCGCCACCAAAATACAAATGAAAATTTGTTGTGAGAATACGCCTTACGTGCATTTTGATGCGTCCTCGGTTTGTTCGTTGATTACTCTTTTGGTACTCTTCATAGGATATTTATTGCAAATTTATATTTTCAGAGATGTGGCTTAATTTTAACTGATTCGAATGGCCATGGTATTCCTAGAAAGATGAATGATGAGGAACCCTAAATTTTATTTGGCTAGCACATGTGGGTATTGCTTTTGATCTTTTTTGATTCCTGGATAAGTTATTCAGGAGAGGTGTTGCTTCATTGATCTGCTTTCGTTGAAAAAAAATGGGTTATTTTTTTAGATTGGAGTATGTTATAAGTTATGCAAGTTCATATTTTGAACCTAACCTCCTTATCAGAACTCTTTAATTCATAGACTCCGTAGCTTCTTTTCTTTGTTTGTGTGTGTTTTCAACTTTGTAATTTAGAATGAGTTATATGTATATAGATTAATAAGGAGTTAGTGTAGTCTTCCGCTGTACTTTGAATTAAGCTCTTTCAAGGTAAGCTTCTTTTTTCAGGGAAAGAAAACCTTCATACTCTATTACTTCGGAAGGCTTATGTATTTATTTTAGAGAGGTAGATGTAAATTAAATTAGTACCTAAACTTTGAAAACAGTTAGTTAGAGATGTTTTGCGTAAGTGTTTCCTCCCCTCCCCCACCCAGACATCAAAAGGAGGGTATTCTTTTTGTTTCTTCCCCTCTTGTGCAATTCCCTTAGCATCAGGTATTAACAATCTATTTTGGGAATAATTTTTTTGGAAATGTTACTGTTACTCTCTCGATCTTATGTTTCTATTCAATCAACTCTGCTTCGGTGAGTTTAGCAAAGTGTACCCCATCTAAAGCCTGGAAAAGAGTTGTGTTGTGGTTGGTCTCCTAGAAAAAGAGAGTATTTTGCAATCATGATGCATAGACCCATCGCTTAGTGCAGTATAATACAATCTTTTACCTTTGTAATTATGCTTGCTCAGTCTCGCCTCTTATGAGGCTAAAATTACTGATGTGTGGCATGTTCTTCTAACAGGCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTG</genome_strand>
        <mrna_strand>CCTAATCTGCTGGAGAATCAGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACACAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGNCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E590625" ref_strand="+" ref_description="SGN-E590625 [44225]">
      <seq>tggagaatcagctgaatttcaccgattcatcacatttctgcttcaatattcatgggcacctataaagggccttctttctctgcaacggactgcattagctcaacgttctagtgaaagatggggcctatatggtaggttatttagcactcaggctgcatcaactgctagcactccccaacctacacccccacccccacctcccgagaggactcactttggtggccttaaagatgaggatcgtattttcacaaatctctacggattgcatgacccttacctcaaaggtgccatgaagcgaggagattggtacagaacaaaagatcttgtcatcaagggttctgactggatcgtgaatgaaatgaagaaatctggtcttcgaggacgtggcggtgctggttttccatctggtctcaaatggtccttcatgccaaagacaacagatggccgtccttcatatcttgtcgtcaatgctgatgaaagtgaacctggaacctgtaaagacagggaaatcatgcggcatgacccacacaagttgttggaaggctgtctgattgcaggagtggggatgagggctaaagctgcttatatttatatcaggggagagtatgtgaatgaaaggaagagccttcagaaggctagacaagaagcctatgaagctggattgttggggaaaaatgcttgtggatctggttatgattttgacgtatatattcatttcggtgctggtgcctatatttgtggtgaagagacagctcttctggagcagccttgcacggcaaaacaagggcaaaaccaaggattgaaagcctcgcatttccaggctaaatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="58771" stop="61275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59071" g_stop="59124" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="60211" i_length="1087">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.983" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60212" g_stop="60920" g_length="709"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="764" r_length="710" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E590625" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E590625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59071" e_stop="59124"/>
          <exon e_start="60212" e_stop="60920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGAATCAGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATGGTAAGTCCCTATCTTCGATCTGTAATTTTTTTGCGCCACCAAAATACAAATGAAAATTTGTTGTGAGAATACGCCTTACGTGCATTTTGATGCGTCCTCGGTTTGTTCGTTGATTACTCTTTTGGTACTCTTCATAGGATATTTATTGCAAATTTATATTTTCAGAGATGTGGCTTAATTTTAACTGATTCGAATGGCCATGGTATTCCTAGAAAGATGAATGATGAGGAACCCTAAATTTTATTTGGCTAGCACATGTGGGTATTGCTTTTGATCTTTTTTGATTCCTGGATAAGTTATTCAGGAGAGGTGTTGCTTCATTGATCTGCTTTCGTTGAAAAAAAATGGGTTATTTTTTTAGATTGGAGTATGTTATAAGTTATGCAAGTTCATATTTTGAACCTAACCTCCTTATCAGAACTCTTTAATTCATAGACTCCGTAGCTTCTTTTCTTTGTTTGTGTGTGTTTTCAACTTTGTAATTTAGAATGAGTTATATGTATATAGATTAATAAGGAGTTAGTGTAGTCTTCCGCTGTACTTTGAATTAAGCTCTTTCAAGGTAAGCTTCTTTTTTCAGGGAAAGAAAACCTTCATACTCTATTACTTCGGAAGGCTTATGTATTTATTTTAGAGAGGTAGATGTAAATTAAATTAGTACCTAAACTTTGAAAACAGTTAGTTAGAGATGTTTTGCGTAAGTGTTTCCTCCCCTCCCCCACCCAGACATCAAAAGGAGGGTATTCTTTTTGTTTCTTCCCCTCTTGTGCAATTCCCTTAGCATCAGGTATTAACAATCTATTTTGGGAATAATTTTTTTGGAAATGTTACTGTTACTCTCTCGATCTTATGTTTCTATTCAATCAACTCTGCTTCGGTGAGTTTAGCAAAGTGTACCCCATCTAAAGCCTGGAAAAGAGTTGTGTTGTGGTTGGTCTCCTAGAAAAAGAGAGTATTTTGCAATCATGATGCATAGACCCATCGCTTAGTGCAGTATAATACAATCTTTTACCTTTGTAATTATGCTTGCTCAGTCTCGCCTCTTATGAGGCTAAAATTACTGATGTGTGGCATGTTCTTCTAACAGG-CACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGTGGTGAAGAGACAGCTCTTCTGGAGA</genome_strand>
        <mrna_strand>TGGAGAATCAGCTGAATTTCACCGATTCATCACATTTCTGCTTCAATATTCATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCACCTATAAAGGGCCTTCTTTCTCTGCAACGGACTGCATTAGCTCAACGTTCTAGTGAAAGATGGGGCCTATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGCGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGGGCTAAAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGAAGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTCGGTGCTGGTGCCTATATTTGTGGTGAAGAGACAGCTCTTCTGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E332681" ref_strand="+" ref_description="SGN-E332681 [cTOD-18-N24]">
      <seq>agctgaatttcgtcgattaatcacatttctgcttcaatattcatggcacctataaagggccttctttctctacaacgaactgcattagctcagcgttctagtgaaagatggggccaatatggtaggttatttagcactcaggctgcatcaactgctagcactccccaacctacacccccacccccacctcccgagaggactcactttggtggccttaaagatgaggatcgtattttcacaaatctctacggattgcatgacccttacctcaaaggtgccatgaagcgaggagattggtacagaacaaaagatcttgtcatcaagggttctgactggatcgtgaatgaaatgaagaaatctggtcttcgaggacgtggtggtgctggttttccatctggtctcaaatggtccttcatgccaaagacaacagatggccgtccttcatatcttgtcgtcaatgctgatgaaagtgaacctggaacctgtaaagacagggaaatcatgcggcatgacccacacaagttgttggaaagctgtctgattgcangagtggggatgagagctagagctgcttatatttatatcaggggagagtatgtgaatgaaaaggtgagccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="58780" stop="61085"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59080" g_stop="59124" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="60211" i_length="1087">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60212" g_stop="60785" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="619" r_length="574" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E332681" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59080" e_stop="59124"/>
          <exon e_start="60212" e_stop="60785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATGGTAAGTCCCTATCTTCGATCTGTAATTTTTTTGCGCCACCAAAATACAAATGAAAATTTGTTGTGAGAATACGCCTTACGTGCATTTTGATGCGTCCTCGGTTTGTTCGTTGATTACTCTTTTGGTACTCTTCATAGGATATTTATTGCAAATTTATATTTTCAGAGATGTGGCTTAATTTTAACTGATTCGAATGGCCATGGTATTCCTAGAAAGATGAATGATGAGGAACCCTAAATTTTATTTGGCTAGCACATGTGGGTATTGCTTTTGATCTTTTTTGATTCCTGGATAAGTTATTCAGGAGAGGTGTTGCTTCATTGATCTGCTTTCGTTGAAAAAAAATGGGTTATTTTTTTAGATTGGAGTATGTTATAAGTTATGCAAGTTCATATTTTGAACCTAACCTCCTTATCAGAACTCTTTAATTCATAGACTCCGTAGCTTCTTTTCTTTGTTTGTGTGTGTTTTCAACTTTGTAATTTAGAATGAGTTATATGTATATAGATTAATAAGGAGTTAGTGTAGTCTTCCGCTGTACTTTGAATTAAGCTCTTTCAAGGTAAGCTTCTTTTTTCAGGGAAAGAAAACCTTCATACTCTATTACTTCGGAAGGCTTATGTATTTATTTTAGAGAGGTAGATGTAAATTAAATTAGTACCTAAACTTTGAAAACAGTTAGTTAGAGATGTTTTGCGTAAGTGTTTCCTCCCCTCCCCCACCCAGACATCAAAAGGAGGGTATTCTTTTTGTTTCTTCCCCTCTTGTGCAATTCCCTTAGCATCAGGTATTAACAATCTATTTTGGGAATAATTTTTTTGGAAATGTTACTGTTACTCTCTCGATCTTATGTTTCTATTCAATCAACTCTGCTTCGGTGAGTTTAGCAAAGTGTACCCCATCTAAAGCCTGGAAAAGAGTTGTGTTGTGGTTGGTCTCCTAGAAAAAGAGAGTATTTTGCAATCATGATGCATAGACCCATCGCTTAGTGCAGTATAATACAATCTTTTACCTTTGTAATTATGCTTGCTCAGTCTCGCCTCTTATGAGGCTAAAATTACTGATGTGTGGCATGTTCTTCTAACAGGCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTC</genome_strand>
        <mrna_strand>AGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAAGCTGTCTGATTGCANGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAAGGTGAGCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E564034" ref_strand="+" ref_description="SGN-E564034 [3448]">
      <seq>ctgaatttcaccgattcatcacatttctgcttcaatattcatggcacctataaagggccttctttctctgcaacggactgcattagctcaacgttctagtgaaagatggggcctatatggtaggttatttagcactcaggctgcatcaactgctagcactccccaacctacacccccacccccacctcccgagaggactcactttggtggccttaaagatgaggatcgtattttcacaaatctctacggattgcatgacccttacctcaaaggtgccatgaagcgaggagattggtacagaacaaaagatcttgtcatcaagggttctgactggatcgtgaatgaaatgaagaaatctggtcttcgaggacgtggcggtgctggttttccatctggtctcaaatggtccttcatgccaaagacaacagatggccgtccttcatatcttgtcgtcaatgctgatgaaagtgaacctgggaacctgtaaagacagggaaatcatgcggcatgacccacacaagttgttggaaggctgtctgattgcagagtggggatgagggctaaagctgcttatatttaatatcaggggagagtatgtgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="58782" stop="61070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59082" g_stop="59124" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="60211" i_length="1087">
            <donor d_prob="0.998" d_score="0.93"/>
            <acceptor a_prob="0.983" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60212" g_stop="60770" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="603" r_length="560" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E564034" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E564034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59082" e_stop="59124"/>
          <exon e_start="60212" e_stop="60770"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATGGTAAGTCCCTATCTTCGATCTGTAATTTTTTTGCGCCACCAAAATACAAATGAAAATTTGTTGTGAGAATACGCCTTACGTGCATTTTGATGCGTCCTCGGTTTGTTCGTTGATTACTCTTTTGGTACTCTTCATAGGATATTTATTGCAAATTTATATTTTCAGAGATGTGGCTTAATTTTAACTGATTCGAATGGCCATGGTATTCCTAGAAAGATGAATGATGAGGAACCCTAAATTTTATTTGGCTAGCACATGTGGGTATTGCTTTTGATCTTTTTTGATTCCTGGATAAGTTATTCAGGAGAGGTGTTGCTTCATTGATCTGCTTTCGTTGAAAAAAAATGGGTTATTTTTTTAGATTGGAGTATGTTATAAGTTATGCAAGTTCATATTTTGAACCTAACCTCCTTATCAGAACTCTTTAATTCATAGACTCCGTAGCTTCTTTTCTTTGTTTGTGTGTGTTTTCAACTTTGTAATTTAGAATGAGTTATATGTATATAGATTAATAAGGAGTTAGTGTAGTCTTCCGCTGTACTTTGAATTAAGCTCTTTCAAGGTAAGCTTCTTTTTTCAGGGAAAGAAAACCTTCATACTCTATTACTTCGGAAGGCTTATGTATTTATTTTAGAGAGGTAGATGTAAATTAAATTAGTACCTAAACTTTGAAAACAGTTAGTTAGAGATGTTTTGCGTAAGTGTTTCCTCCCCTCCCCCACCCAGACATCAAAAGGAGGGTATTCTTTTTGTTTCTTCCCCTCTTGTGCAATTCCCTTAGCATCAGGTATTAACAATCTATTTTGGGAATAATTTTTTTGGAAATGTTACTGTTACTCTCTCGATCTTATGTTTCTATTCAATCAACTCTGCTTCGGTGAGTTTAGCAAAGTGTACCCCATCTAAAGCCTGGAAAAGAGTTGTGTTGTGGTTGGTCTCCTAGAAAAAGAGAGTATTTTGCAATCATGATGCATAGACCCATCGCTTAGTGCAGTATAATACAATCTTTTACCTTTGTAATTATGCTTGCTCAGTCTCGCCTCTTATGAGGCTAAAATTACTGATGTGTGGCATGTTCTTCTAACAGGCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCT-GGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTT-ATATCAGGGGAGAGTATGTGAATG</genome_strand>
        <mrna_strand>CTGAATTTCACCGATTCATCACATTTCTGCTTCAATATTCATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCTATAAAGGGCCTTCTTTCTCTGCAACGGACTGCATTAGCTCAACGTTCTAGTGAAAGATGGGGCCTATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGCGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCA-GAGTGGGGATGAGGGCTAAAGCTGCTTATATTTAATATCAGGGGAGAGTATGTGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284092" ref_strand="+" ref_description="SGN-E284092 [cLER-13-B11]">
      <seq>tcgtcgattaatcacatttctgcttcaatattcatggcacctataaagggccttctttctctacaacgaactgcattagctcagcgttctagtgaaagatggggccaatatggtaggttatttagcactcaggctgcatcaactgctagcactccccaacctacacccccacccccacctcccgagaggactcactttggtggccttaaagatgaggatcgtattttcacaaatctctacggattgcatgacccttacctcaaaggtgccatgaagcgaggagattggttcagaacaaaagatcttgtcatcaagggttctgactggatcgggaatgaaatgaagaaatctggtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="58789" stop="60831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59089" g_stop="59124" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="60211" i_length="1087">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60212" g_stop="60531" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="356" r_length="320" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E284092" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59089" e_stop="59124"/>
          <exon e_start="60212" e_stop="60531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTCGATTAATCACATTTCTGCTTCAATATTCATGGTAAGTCCCTATCTTCGATCTGTAATTTTTTTGCGCCACCAAAATACAAATGAAAATTTGTTGTGAGAATACGCCTTACGTGCATTTTGATGCGTCCTCGGTTTGTTCGTTGATTACTCTTTTGGTACTCTTCATAGGATATTTATTGCAAATTTATATTTTCAGAGATGTGGCTTAATTTTAACTGATTCGAATGGCCATGGTATTCCTAGAAAGATGAATGATGAGGAACCCTAAATTTTATTTGGCTAGCACATGTGGGTATTGCTTTTGATCTTTTTTGATTCCTGGATAAGTTATTCAGGAGAGGTGTTGCTTCATTGATCTGCTTTCGTTGAAAAAAAATGGGTTATTTTTTTAGATTGGAGTATGTTATAAGTTATGCAAGTTCATATTTTGAACCTAACCTCCTTATCAGAACTCTTTAATTCATAGACTCCGTAGCTTCTTTTCTTTGTTTGTGTGTGTTTTCAACTTTGTAATTTAGAATGAGTTATATGTATATAGATTAATAAGGAGTTAGTGTAGTCTTCCGCTGTACTTTGAATTAAGCTCTTTCAAGGTAAGCTTCTTTTTTCAGGGAAAGAAAACCTTCATACTCTATTACTTCGGAAGGCTTATGTATTTATTTTAGAGAGGTAGATGTAAATTAAATTAGTACCTAAACTTTGAAAACAGTTAGTTAGAGATGTTTTGCGTAAGTGTTTCCTCCCCTCCCCCACCCAGACATCAAAAGGAGGGTATTCTTTTTGTTTCTTCCCCTCTTGTGCAATTCCCTTAGCATCAGGTATTAACAATCTATTTTGGGAATAATTTTTTTGGAAATGTTACTGTTACTCTCTCGATCTTATGTTTCTATTCAATCAACTCTGCTTCGGTGAGTTTAGCAAAGTGTACCCCATCTAAAGCCTGGAAAAGAGTTGTGTTGTGGTTGGTCTCCTAGAAAAAGAGAGTATTTTGCAATCATGATGCATAGACCCATCGCTTAGTGCAGTATAATACAATCTTTTACCTTTGTAATTATGCTTGCTCAGTCTCGCCTCTTATGAGGCTAAAATTACTGATGTGTGGCATGTTCTTCTAACAGGCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCT</genome_strand>
        <mrna_strand>TCGTCGATTAATCACATTTCTGCTTCAATATTCATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTTCAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGGGAATGAAATGAAGAAATCTGGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E417025" ref_strand="+" ref_description="SGN-E417025 [STM-24-K8]">
      <seq>caccgattcatcacatttctgcttcaatattcatggcacctataaagggccttctttctctgcaacggactgcattaactcaacgttctactgaaagatggggcctatatggtaggttatttagcactcaagctgcatcaactgctaccactccccaacctacacccccacccccacctaccgagaggactcactttggtggccttaaagatgaggatcgtattttcacaaatctctacggattgcatgacccttacctcaaaggtgccatgaagcgaggagattggtacagaacaaaagatcttgtcatcaagggttctgactggatcgtgaatgaaatgaagaaatctggtcttcgaggacgtggtggtgctggttttccatctggtctcaaatggtccttcatgccaaagacaacagatggccgtccttcatatcttgtcgccaatgctgatgaaagtgaacctggaacctggtaagacaaggaaatcatgcggcatgacccacacaagttgttggaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="58793" stop="61000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59090" g_stop="59124" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="60211" i_length="1087">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60212" g_stop="60700" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="524" r_length="489" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E417025" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E417025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59090" e_stop="59124"/>
          <exon e_start="60212" e_stop="60700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCGATTAATCACATTTCTGCTTCAATATTCATGGTAAGTCCCTATCTTCGATCTGTAATTTTTTTGCGCCACCAAAATACAAATGAAAATTTGTTGTGAGAATACGCCTTACGTGCATTTTGATGCGTCCTCGGTTTGTTCGTTGATTACTCTTTTGGTACTCTTCATAGGATATTTATTGCAAATTTATATTTTCAGAGATGTGGCTTAATTTTAACTGATTCGAATGGCCATGGTATTCCTAGAAAGATGAATGATGAGGAACCCTAAATTTTATTTGGCTAGCACATGTGGGTATTGCTTTTGATCTTTTTTGATTCCTGGATAAGTTATTCAGGAGAGGTGTTGCTTCATTGATCTGCTTTCGTTGAAAAAAAATGGGTTATTTTTTTAGATTGGAGTATGTTATAAGTTATGCAAGTTCATATTTTGAACCTAACCTCCTTATCAGAACTCTTTAATTCATAGACTCCGTAGCTTCTTTTCTTTGTTTGTGTGTGTTTTCAACTTTGTAATTTAGAATGAGTTATATGTATATAGATTAATAAGGAGTTAGTGTAGTCTTCCGCTGTACTTTGAATTAAGCTCTTTCAAGGTAAGCTTCTTTTTTCAGGGAAAGAAAACCTTCATACTCTATTACTTCGGAAGGCTTATGTATTTATTTTAGAGAGGTAGATGTAAATTAAATTAGTACCTAAACTTTGAAAACAGTTAGTTAGAGATGTTTTGCGTAAGTGTTTCCTCCCCTCCCCCACCCAGACATCAAAAGGAGGGTATTCTTTTTGTTTCTTCCCCTCTTGTGCAATTCCCTTAGCATCAGGTATTAACAATCTATTTTGGGAATAATTTTTTTGGAAATGTTACTGTTACTCTCTCGATCTTATGTTTCTATTCAATCAACTCTGCTTCGGTGAGTTTAGCAAAGTGTACCCCATCTAAAGCCTGGAAAAGAGTTGTGTTGTGGTTGGTCTCCTAGAAAAAGAGAGTATTTTGCAATCATGATGCATAGACCCATCGCTTAGTGCAGTATAATACAATCTTTTACCTTTGTAATTATGCTTGCTCAGTCTCGCCTCTTATGAGGCTAAAATTACTGATGTGTGGCATGTTCTTCTAACAGGCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGC</genome_strand>
        <mrna_strand>CACCGATTCATCACATTTCTGCTTCAATATTCATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCTATAAAGGGCCTTCTTTCTCTGCAACGGACTGCATTAACTCAACGTTCTACTGAAAGATGGGGCCTATATGGTAGGTTATTTAGCACTCAAGCTGCATCAACTGCTACCACTCCCCAACCTACACCCCCACCCCCACCTACCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGCCAATGCTGATGAAAGTGAACCTGGAACCTGGTAAGACAAGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E702317" ref_strand="+" ref_description="SGN-E702317 [FA18BE11]">
      <seq>gattaatcacatttctgcttcaatattcatggcacctataaagggccttctttctctacaacgaactgcattagctcagcgttctagtgaaagatggggccaatatggtaggttatttagcactcaggctgcatcaactgctagcactccccaacctacacccccacccccacctcccgagaggactcactttggtggccttaaagatgaggatcgtattttcacaaatctctacggattgcatgacccttacctcaaaggtgccatgaagcgaggagattggtacagaacaaaagatcttgtcatcaagggttctgactggatcgtgaatgaaatgaagaaatctggtcttcgaggacgtggtggtgctggttttccatctggtctcaaatggtccttcatgccaaagacaacagatggccgtccttcatatcttgtcgtcaatgctgatgaaagtgaacctggaacctgtaaagacagggaaatcatgcggcatgacccacacaagttgttggaaggctgtctgattgcaggagtggggatgagagctagagctgcttatatttatatcaggggagagtatgtgaatgaaaggttgagccttcagaaggctagacaagaagcctatgaagctggattgttggggaaaaatgcttgtggatctggttatgattttgacgtatatattcattttggtgctggtgcctatatttgtggtgaagagacagctcttctggagagccttgagggcaaacaaggcaaaccaagattgaagcctccatttccagctaatgcaggactatatggatgtccaacaactgttacaaatgttgaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="58794" stop="61318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59094" g_stop="59124" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59125" i_stop="60211" i_length="1087">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60212" g_stop="61018" g_length="807"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="838" r_length="807" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E702317" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>838</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59094" e_stop="59124"/>
          <exon e_start="60212" e_stop="61018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTAATCACATTTCTGCTTCAATATTCATGGTAAGTCCCTATCTTCGATCTGTAATTTTTTTGCGCCACCAAAATACAAATGAAAATTTGTTGTGAGAATACGCCTTACGTGCATTTTGATGCGTCCTCGGTTTGTTCGTTGATTACTCTTTTGGTACTCTTCATAGGATATTTATTGCAAATTTATATTTTCAGAGATGTGGCTTAATTTTAACTGATTCGAATGGCCATGGTATTCCTAGAAAGATGAATGATGAGGAACCCTAAATTTTATTTGGCTAGCACATGTGGGTATTGCTTTTGATCTTTTTTGATTCCTGGATAAGTTATTCAGGAGAGGTGTTGCTTCATTGATCTGCTTTCGTTGAAAAAAAATGGGTTATTTTTTTAGATTGGAGTATGTTATAAGTTATGCAAGTTCATATTTTGAACCTAACCTCCTTATCAGAACTCTTTAATTCATAGACTCCGTAGCTTCTTTTCTTTGTTTGTGTGTGTTTTCAACTTTGTAATTTAGAATGAGTTATATGTATATAGATTAATAAGGAGTTAGTGTAGTCTTCCGCTGTACTTTGAATTAAGCTCTTTCAAGGTAAGCTTCTTTTTTCAGGGAAAGAAAACCTTCATACTCTATTACTTCGGAAGGCTTATGTATTTATTTTAGAGAGGTAGATGTAAATTAAATTAGTACCTAAACTTTGAAAACAGTTAGTTAGAGATGTTTTGCGTAAGTGTTTCCTCCCCTCCCCCACCCAGACATCAAAAGGAGGGTATTCTTTTTGTTTCTTCCCCTCTTGTGCAATTCCCTTAGCATCAGGTATTAACAATCTATTTTGGGAATAATTTTTTTGGAAATGTTACTGTTACTCTCTCGATCTTATGTTTCTATTCAATCAACTCTGCTTCGGTGAGTTTAGCAAAGTGTACCCCATCTAAAGCCTGGAAAAGAGTTGTGTTGTGGTTGGTCTCCTAGAAAAAGAGAGTATTTTGCAATCATGATGCATAGACCCATCGCTTAGTGCAGTATAATACAATCTTTTACCTTTGTAATTATGCTTGCTCAGTCTCGCCTCTTATGAGGCTAAAATTACTGATGTGTGGCATGTTCTTCTAACAGGCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGTGGTGAAGAGACAGCTCTTCTGGAGAGCCTTGAGGGCAAACAAGGCAAACCAAGATTGAAGCCTCCATTTCCAGCTAATGCAGGACTATATGGATGTCCAACAACTGTTACAAATGTTGAAACA</genome_strand>
        <mrna_strand>GATTAATCACATTTCTGCTTCAATATTCATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGTGGTGAAGAGACAGCTCTTCTGGAGAGCCTTGAGGGCAAACAAGGCAAACCAAGATTGAAGCCTCCATTTCCAGCTAATGCAGGACTATATGGATGTCCAACAACTGTTACAAATGTTGAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E697911" ref_strand="+" ref_description="SGN-E697911 [FA04CG02]">
      <seq>caatattcatggcacctataaagggccttccctctaaacaacgaactgcattagctcagcgttctagtgaaagatggggccaatatggtaggttatttagcactcaggctgcatcaactgctagcactccccaacctacacccccacccccacctcccgagaggactcactttggtggccttaaagatgaggatcgtattttcacaaatctctacggattgcatgacccttacctcaaaggtgccatgaagcgaggagatcggtacagaacaaaagatcttgtcatcaagggttctgactggatcgtgaatgaaatgaagaaatctggtcttcgaggacgtggtggtgctggttttccatctggtctcaaatggtccttcatgccaaagacaacagatggccgtccttcatatcttgtcgtcaatgctgatgaaagtgaacctggaacctgtaaagacagggaaatccatgcggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="59909" stop="60975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60212" g_stop="60675" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="476" r_length="465" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E697911" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60212" e_stop="60675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAAT-CATGCGGCA</genome_strand>
        <mrna_strand>GCACCTATAAAGGGCCTTCCCTCTAAACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATCGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCCATGCGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E335056" ref_strand="+" ref_description="SGN-E335056 [cTOE-9-J17]">
      <seq>tcagcgttctagtgaaagcaggggccactatggtaggttatttagcactcaggctgcatcaacctgctagcactccccaacctacaccccccacccccacctcccgagaggacctcacttttggtggccttaaagcagaggatcgtattttcaccaaatctctacggattgcatgacccttacctcaaaggtgccatgaagcgaggagattggtaccagaacaaaagatcttgtcatcaagggttctgacttggatcgtgaatgaaatgaagaaatctggtcttcgaggacctggtggtgctggttttccatctggtctcaaatggtccttcatgccaaagacaacagatggccgtccttcatatcttgtcgtcaatgctgatgaaagtgaacctggaacctgtaaagacagggaaatcatgcggcatgacccacacaagttgttggaaggctgtctgattgcangagtggggatgagagctagagctgcttatatttatatcanggggagagtatgtgaatgaaaggttgagccttcagaaggctagacangaagcctatgaagctgggattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="59956" stop="61121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60256" g_stop="60821" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E335056" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60256" e_stop="60821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAA-CTGCTAGCACTCCCCAACCTACA-CCCCCACCCCCACCTCCCGAGAGGA-CTCAC-TTTGGTGGCCTTAAAGATGAGGATCGTATTTTCA-CAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTA-CAGAACAAAAGATCTTGTCATCAAGGGTTCTGAC-TGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCA-GGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCT-GGATTGT</genome_strand>
        <mrna_strand>TCAGCGTTCTAGTGAAAGCAGGGGCCACTATGGTAGGTTATTTAGCACTCAGGCTGCATCAACCTGCTAGCACTCCCCAACCTACACCCCCCACCCCCACCTCCCGAGAGGACCTCACTTTTGGTGGCCTTAAAGCAGAGGATCGTATTTTCACCAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACCAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACCTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCANGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCANGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACANGAAGCCTATGAAGCTGGGATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E570200" ref_strand="+" ref_description="SGN-E570200 [14747]">
      <seq>ggagcctatatggtaggttatttagcactcaggctgcatcaactgctagcactccccaacctacacccccacccccacctcctgagaggactcactttggtggccttaaagatgaggatcgtattttcacaaatctctacggattgcatgacccttacctcaaaggtgccatgaagcgaggagattggtacagaacaaacgatcttgtcatcaagggttctgactggatcgtgaatgaaatgaagaaatctggtcttcgaggacgtggtggtgctggttttccatctggtctcaaatggtccttcatgccaaagacaacagatggccgtccttcatatcttgtcgtcaatgctgatgaaagtgaacctggaacctgtaaagacaggggaaatcatgcggcatgacccacacaagttgttggaaggctgtctgattgcaggagtggggatgagggctaaagctgcttatatttatatcaggggagagtatgtgaatgacgcggaagagccttcaggaaggcttagacaagcaagcgtatgaaagcttggattgttgggggaaagaattgcttggtggatcctggttaatgattttggacgtatattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="59977" stop="61071"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60276" g_stop="60830" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="562" r_length="562" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E570200" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E570200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60276" e_stop="60830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACA-GGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGA-AAGGTTGAGCCTTCA-GAAGGC-TAGACAAG-AAGCCTATG-AAGC-TGGATTGTTGGGGAAAA</genome_strand>
        <mrna_strand>GGAGCCTATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCTGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAACGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGGGCTAAAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGACGCGGAAGAGCCTTCAGGAAGGCTTAGACAAGCAAGCGTATGAAAGCTTGGATTGTTGGGGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E314111" ref_strand="+" ref_description="SGN-E314111 [cTOA-19-H18]">
      <seq>gatcgtattctcacaaatctctacggattgcatgacccttacctcaaaggtgccatgaagcgaggagattggtacagaacaaaagatcttgtcatcaagggttctgactggatcgtgaatgaaatgaataaatctggtcttccatgacgtggtggtgctggagttccatctggcctcaaatggtccttcatgccaaagacaacaaatggccggccttcatatcttgatgtcaatgctgatgaaagtgaacctggaacctgttaagacagggaaatcatgcggcatgacccacacaagttgttggaaggctgtctgattgctagagtggggatgacagctag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="60092" stop="61032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60392" g_stop="60732" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E314111" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60392" e_stop="60732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAG</genome_strand>
        <mrna_strand>GATCGTATTCTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAATAAATCTGGTCTTCCATGACGTGGTGGTGCTGGAGTTCCATCTGGCCTCAAATGGTCCTTCATGCCAAAGACAACAAATGGCCGGCCTTCATATCTTGATGTCAATGCTGATGAAAGTGAACCTGGAACCTGTTAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCTAGAGTGGGGATGACAGCTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E476474" ref_strand="+" ref_description="SGN-E476474 [cSTB-45-A7]">
      <seq>aagaaatctggtcttcgaggacgtggtggtgctggttttccatctggtctcaaatggtccttcatgccaaagacaacagatggccgtccttcatatcttgtcgtcaatgctgatgaaagtgaacctggaacctgtaaagacagggaaatcatgcggcatgacccacacaagttgttggaaggctgtctgattgcaggagtggggatgagggctaaagctgcttatatttatatcaggggagagtatgtgaatgaaaggaagagccttcagaaggctagacaagaagcctatgaagctggattgttggggaaaaatgcttgtggatctggttatgattttgacgtatatattcattttggtgctggtgcctatatttgtggtgaagagacagctcttctggagagccttgagggcaaacaaggcaaaccaagattgaagcctccatttccagctaattcaggactatatggatgtccaacaactgtcacaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="60218" stop="61309"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60518" g_stop="61009" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E476474" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E476474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60518" e_stop="61009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGTGGTGAAGAGACAGCTCTTCTGGAGAGCCTTGAGGGCAAACAAGGCAAACCAAGATTGAAGCCTCCATTTCCAGCTAATGCAGGACTATATGGATGTCCAACAACTGTTACAAAT</genome_strand>
        <mrna_strand>AAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGGGCTAAAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGAAGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGTGGTGAAGAGACAGCTCTTCTGGAGAGCCTTGAGGGCAAACAAGGCAAACCAAGATTGAAGCCTCCATTTCCAGCTAATTCAGGACTATATGGATGTCCAACAACTGTCACAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E700651" ref_strand="+" ref_description="SGN-E700651 [FA13DA06]">
      <seq>ttccatctggtctcaaatggtccttcatgccaaagacaacagatggccgtccttcatatcttgtcgtcaatgctgatgaaagtgaacctggaacctgtaaagacagggaaatcatgcggcatgacccacacaagttgttggaaggctgtctgattgcaggagtggggatgagagctagagctgcttatatttatatcaggggagagtatgtgaatgaaaggttgagccttcagaaggctagacaagaagcctatgaagctggattgttggggaaaaatgcttgtggatctggttatgattttgacgtatatattcattttggtgctggtgcctatatttgtggtgaagagacagctcttctggagagccttgagggcaaacaaggcaaaccaagattgaagcctccatttccagctaatgcaggactatatggatgtccaacaactgttacaaatgttgaaacagtagctgtttcaccaaccatcttaaggcgtggtccagagtggtttgctagttttggccggaagaataatgccgggacaaagctgttttgcatctcaggccatgttaacaagccctgtacagttgaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="60255" stop="61446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60555" g_stop="61146" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="592" r_length="592" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E700651" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60555" e_stop="61146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGTGGTGAAGAGACAGCTCTTCTGGAGAGCCTTGAGGGCAAACAAGGCAAACCAAGATTGAAGCCTCCATTTCCAGCTAATGCAGGACTATATGGATGTCCAACAACTGTTACAAATGTTGAAACAGTAGCTGTTTCACCAACCATCTTAAGGCGTGGTCCAGAGTGGTTTGCTAGTTTTGGCCGGAAGAATAATGCCGGGACAAAGCTGTTTTGCATCTCAGGCCATGTTAACAAGCCCTGTACAGTTGAAGA</genome_strand>
        <mrna_strand>TTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGTGGTGAAGAGACAGCTCTTCTGGAGAGCCTTGAGGGCAAACAAGGCAAACCAAGATTGAAGCCTCCATTTCCAGCTAATGCAGGACTATATGGATGTCCAACAACTGTTACAAATGTTGAAACAGTAGCTGTTTCACCAACCATCTTAAGGCGTGGTCCAGAGTGGTTTGCTAGTTTTGGCCGGAAGAATAATGCCGGGACAAAGCTGTTTTGCATCTCAGGCCATGTTAACAAGCCCTGTACAGTTGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E202362" ref_strand="+" ref_description="SGN-E202362 [cLEC-6-B22]">
      <seq>tcaaatggtccttcatgccaaagacaacagatggccgtccttcatatcttgtcgtcaatgctgatgaaagtgaacctggaacctgtaaagacagggaaatcatgcggcatgacccacacaagttgttggaaggctgtctgattgcatgagtggggatgagagctagagctgcttatatttatatcacgggagagtatgtgaatgaaaggttgagccttcaaaaggctagacaagaagcctatgaagctggattgttggggaaaaatgcttgtggatctggttatgattctgacgtatatattcattttggtgctggtgcctatatttgtggtgaagagacagctcttctggagagccttgagggcaaacaaggcaaaccaagattgaagcctccatttccagctaatgcaggactatatggatgtccaacaactgttacaaatgttgaaacagtagctgtttcaccaaccatcttaaggcgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="60267" stop="61350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60567" g_stop="61050" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E202362" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60567" e_stop="61050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGTGGTGAAGAGACAGCTCTTCTGGAGAGCCTTGAGGGCAAACAAGGCAAACCAAGATTGAAGCCTCCATTTCCAGCTAATGCAGGACTATATGGATGTCCAACAACTGTTACAAATGTTGAAACAGTAGCTGTTTCACCAACCATCTTAAGGCGTGG</genome_strand>
        <mrna_strand>TCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCATGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCACGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAAAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAATGCTTGTGGATCTGGTTATGATTCTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGTGGTGAAGAGACAGCTCTTCTGGAGAGCCTTGAGGGCAAACAAGGCAAACCAAGATTGAAGCCTCCATTTCCAGCTAATGCAGGACTATATGGATGTCCAACAACTGTTACAAATGTTGAAACAGTAGCTGTTTCACCAACCATCTTAAGGCGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E698922" ref_strand="+" ref_description="SGN-E698922 [FA08AB02]">
      <seq>gagacagctcttctggagagccttgagggcaaacaaggcaaaccaagattgaagcctccatttccagctaatgcaggactatatggatgtccaacaactgttacaaatgttgaaacagtagctgtttcaccaaccatcttaaggcgtggtccagagtggtttgctagttttggccggaagaataatgccgggacaaagctgttttgcatctcaggccatgttaacaagccctgtacagttgaagaggaaatgagtatttcattgaaggagctgctagagaggcactgtggtggtgtgcgtggaggatgggacaatttgcttgctgttataccaggaggttcatctgttccactgcttcccaagaacatatgtgaggatgtacttatggattttgatgcactcaaagctgtgcagtcagggttgggaactgctgctgtaattgtcatggacaagtcaactgatgttgtagatgcaattgcaaggctctcgtacttctacaagcacgagagttgtggtcaatgtacacccatgtagggaaggcacaggatggctttggatgatcatggaaagaatgaaggttggcaatgcaaagttggaagagattgacatgctccaagaggtgacaaaacagattgaagggcacactatttgtgccttgggtgacgctgctgcttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="60602" stop="61877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60902" g_stop="61577" g_length="676"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="677" r_length="677" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E698922" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60902" e_stop="61577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACAGCTCTTCTGGAGAGCCTTGAGGGCAAACAAGGCAAACCAAGATTGAAGCCTCCATTTCCAGCTAATGCAGGACTATATGGATGTCCAACAACTGTTACAAATGTTGAAACAGTAGCTGTTTCACCAACCATCTTAAGGCGTGGTCCAGAGTGGTTTGCTAGTTTTGGCCGGAAGAATAATGCCGGGACAAAGCTGTTTTGCATCTCAGGCCATGTTAACAAGCCCTGTACAGTTGAAGAGGAAATGAGTATTTCATTGAAGGAGCTGCTAGAGAGGCACTGTGGTGGTGTGCGTGGAGGATGGGACAATTTGCTTGCTGTTATACCAGGAGGTTCATCTGTTCCACTGCTTCCCAAGAACATATGTGAGGATGTACTTATGGATTTTGATGCACTCAAAGCTGTGCAGTCAGGGTTGGGAACTGCTGCTGTAATTGTCATGGACAAGTCAACTGATGTTGTAGATGCAATTGCAAGGCTCTCGTACTTCTACAAGCACGAGAGTTGTGGTCAATGTACA-CCATGTAGGGAAGGCACAGGATGGCTTTGGATGATCATGGAAAGAATGAAGGTTGGCAATGCAAAGTTGGAAGAGATTGACATGCTCCAAGAGGTGACAAAACAGATTGAAGGGCACACTATTTGTGCCTTGGGTGACGCTGCTGCTTGGC</genome_strand>
        <mrna_strand>GAGACAGCTCTTCTGGAGAGCCTTGAGGGCAAACAAGGCAAACCAAGATTGAAGCCTCCATTTCCAGCTAATGCAGGACTATATGGATGTCCAACAACTGTTACAAATGTTGAAACAGTAGCTGTTTCACCAACCATCTTAAGGCGTGGTCCAGAGTGGTTTGCTAGTTTTGGCCGGAAGAATAATGCCGGGACAAAGCTGTTTTGCATCTCAGGCCATGTTAACAAGCCCTGTACAGTTGAAGAGGAAATGAGTATTTCATTGAAGGAGCTGCTAGAGAGGCACTGTGGTGGTGTGCGTGGAGGATGGGACAATTTGCTTGCTGTTATACCAGGAGGTTCATCTGTTCCACTGCTTCCCAAGAACATATGTGAGGATGTACTTATGGATTTTGATGCACTCAAAGCTGTGCAGTCAGGGTTGGGAACTGCTGCTGTAATTGTCATGGACAAGTCAACTGATGTTGTAGATGCAATTGCAAGGCTCTCGTACTTCTACAAGCACGAGAGTTGTGGTCAATGTACACCCATGTAGGGAAGGCACAGGATGGCTTTGGATGATCATGGAAAGAATGAAGGTTGGCAATGCAAAGTTGGAAGAGATTGACATGCTCCAAGAGGTGACAAAACAGATTGAAGGGCACACTATTTGTGCCTTGGGTGACGCTGCTGCTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E262570" ref_strand="+" ref_description="SGN-E262570 [cLEG-63-I24]">
      <seq>agacagctcttctggagagccttgagggcaaacaaggcaaaccaagattgaagcctccatttccagctaatgcaggactatatggatgtccaacaactgttacaaatgttgaaacagtagctgtttcaccaaccatcttaaggcgtggtccagagtggtttgctagttttggccggaagaataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="60603" stop="61387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60903" g_stop="61087" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E262570" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>185</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60903" e_stop="61087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACAGCTCTTCTGGAGAGCCTTGAGGGCAAACAAGGCAAACCAAGATTGAAGCCTCCATTTCCAGCTAATGCAGGACTATATGGATGTCCAACAACTGTTACAAATGTTGAAACAGTAGCTGTTTCACCAACCATCTTAAGGCGTGGTCCAGAGTGGTTTGCTAGTTTTGGCCGGAAGAATAAT</genome_strand>
        <mrna_strand>AGACAGCTCTTCTGGAGAGCCTTGAGGGCAAACAAGGCAAACCAAGATTGAAGCCTCCATTTCCAGCTAATGCAGGACTATATGGATGTCCAACAACTGTTACAAATGTTGAAACAGTAGCTGTTTCACCAACCATCTTAAGGCGTGGTCCAGAGTGGTTTGCTAGTTTTGGCCGGAAGAATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E699213" ref_strand="+" ref_description="SGN-E699213 [FA09AD09]">
      <seq>caaacaaggnaaaccaagattgaagcctccatctctagctaatgcaggactatatggatgtccaacaactgttacaaatgttgaaacactagctgtttcaccaaccatcttaaggcgtggtccagagtggtttgctagttttggccggaagaataatgccgggacaaagctgctttgcatctcaggccatgttaacaagccctgtacagttgaagaggaaatgactatttccttgaacgagctgctacagaggcactgtggtggtgtgcgtggaggatgggacaatttgcttgctgttatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="60631" stop="61533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60931" g_stop="61233" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E699213" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>303</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60931" e_stop="61233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACAAGGCAAACCAAGATTGAAGCCTCCATTTCCAGCTAATGCAGGACTATATGGATGTCCAACAACTGTTACAAATGTTGAAACAGTAGCTGTTTCACCAACCATCTTAAGGCGTGGTCCAGAGTGGTTTGCTAGTTTTGGCCGGAAGAATAATGCCGGGACAAAGCTGTTTTGCATCTCAGGCCATGTTAACAAGCCCTGTACAGTTGAAGAGGAAATGAGTATTTCATTGAAGGAGCTGCTAGAGAGGCACTGTGGTGGTGTGCGTGGAGGATGGGACAATTTGCTTGCTGTTATACC</genome_strand>
        <mrna_strand>CAAACAAGGNAAACCAAGATTGAAGCCTCCATCTCTAGCTAATGCAGGACTATATGGATGTCCAACAACTGTTACAAATGTTGAAACACTAGCTGTTTCACCAACCATCTTAAGGCGTGGTCCAGAGTGGTTTGCTAGTTTTGGCCGGAAGAATAATGCCGGGACAAAGCTGCTTTGCATCTCAGGCCATGTTAACAAGCCCTGTACAGTTGAAGAGGAAATGACTATTTCCTTGAACGAGCTGCTACAGAGGCACTGTGGTGGTGTGCGTGGAGGATGGGACAATTTGCTTGCTGTTATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E268225" ref_strand="+" ref_description="SGN-E268225 [cLEM-3-A4]">
      <seq>atgagtctttcattgaaggagctgctacagaggcactgaggtggtgtgcgtggaggatgggacaatttgcttgctgttataccaggaggttcatctgtttcactgcttcccaagaacatatgtgaggatgtacttatggattttgatgcactcaaagctgtgcagtcagggttgggaactgatgctgtaattgtcatggacaagttaactgatgttgtctatgcaattgcaaggctctcgtacttctacaagcacgagagttgtggtcaatgtacaccatgtagggaatgcacacgatggctttggatgatcatggttagaatgaacggtggcaatgcaaagttggaagagattgacatgctccaagaggtgacaaaacagattgaagggcacactatttgtgccttgggtgacgctgctgcttggccagtacagggtcttattaggcactttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="60851" stop="61905"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61151" g_stop="61605" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E268225" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61151" e_stop="61605"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAGTATTTCATTGAAGGAGCTGCTAGAGAGGCACTGTGGTGGTGTGCGTGGAGGATGGGACAATTTGCTTGCTGTTATACCAGGAGGTTCATCTGTTCCACTGCTTCCCAAGAACATATGTGAGGATGTACTTATGGATTTTGATGCACTCAAAGCTGTGCAGTCAGGGTTGGGAACTGCTGCTGTAATTGTCATGGACAAGTCAACTGATGTTGTAGATGCAATTGCAAGGCTCTCGTACTTCTACAAGCACGAGAGTTGTGGTCAATGTACACCATGTAGGGAAGGCACAGGATGGCTTTGGATGATCATGGAAAGAATGAAGGTTGGCAATGCAAAGTTGGAAGAGATTGACATGCTCCAAGAGGTGACAAAACAGATTGAAGGGCACACTATTTGTGCCTTGGGTGACGCTGCTGCTTGGCCAGTACAGGGTCTTATTAGGCACTTTAG</genome_strand>
        <mrna_strand>ATGAGTCTTTCATTGAAGGAGCTGCTACAGAGGCACTGAGGTGGTGTGCGTGGAGGATGGGACAATTTGCTTGCTGTTATACCAGGAGGTTCATCTGTTTCACTGCTTCCCAAGAACATATGTGAGGATGTACTTATGGATTTTGATGCACTCAAAGCTGTGCAGTCAGGGTTGGGAACTGATGCTGTAATTGTCATGGACAAGTTAACTGATGTTGTCTATGCAATTGCAAGGCTCTCGTACTTCTACAAGCACGAGAGTTGTGGTCAATGTACACCATGTAGGGAATGCACACGATGGCTTTGGATGATCATGGTTAGAATGAACGGTGGCAATGCAAAGTTGGAAGAGATTGACATGCTCCAAGAGGTGACAAAACAGATTGAAGGGCACACTATTTGTGCCTTGGGTGACGCTGCTGCTTGGCCAGTACAGGGTCTTATTAGGCACTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E740522" ref_strand="+" ref_description="SGN-E740522 [LC21DB07]">
      <seq>cgatcaatttgcttgctgttataccaggaggttcatctgttccactgcttcccaagaacatatgtgaggatgtacttatggattttgatgcactcaaagctgtgcagtcagggttgggaactgctgctgtaattgtcatggacaagtcaactgatgttgtagatgcaattgcaaggctctcgtacttctacaagcacgagagttgtggtcaatgtacaccatgtagggaaggcacaggatggctttggatgatcatggaaagaatgaaggttggcaatgcaaagttggaagagattgacatgctccaagaggtgacaaaacagattgaagggcacactatttgtgccttgggtgacgctgctgcttggccagtacagggtcttattaggcactttagaccagagctagaaaggaggatcagggagcatgcagagagggagctacaacaggcagctgctgcttgattcttttatgagtttgctgtttgataccatgggaataaattttgagaagtaccagaagtatgaatgtgggaggggaaagcaggacgcagagcttccctatatccagccactttttattatcaaacttgtgtagaactattgttacattgttggcccaatgggtaatttatgtttcagagctggtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="60911" stop="63108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61209" g_stop="61684" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61685" i_stop="62633" i_length="949">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.424" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62634" g_stop="62803" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="646" r_length="170" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="649" polyA_stop="659"/>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E740522" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61209" e_stop="61684"/>
          <exon e_start="62634" e_stop="62803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGACAATTTGCTTGCTGTTATACCAGGAGGTTCATCTGTTCCACTGCTTCCCAAGAACATATGTGAGGATGTACTTATGGATTTTGATGCACTCAAAGCTGTGCAGTCAGGGTTGGGAACTGCTGCTGTAATTGTCATGGACAAGTCAACTGATGTTGTAGATGCAATTGCAAGGCTCTCGTACTTCTACAAGCACGAGAGTTGTGGTCAATGTACACCATGTAGGGAAGGCACAGGATGGCTTTGGATGATCATGGAAAGAATGAAGGTTGGCAATGCAAAGTTGGAAGAGATTGACATGCTCCAAGAGGTGACAAAACAGATTGAAGGGCACACTATTTGTGCCTTGGGTGACGCTGCTGCTTGGCCAGTACAGGGTCTTATTAGGCACTTTAGACCAGAGCTAGAAAGGAGGATCAGGGAGCATGCAGAGAGGGAGCTACAACAGGCAGCTGCTGCTTGATTCTTTTATGAGGTTGGTTCTTAAACTTTTGTTACATTTACATTGTAGTGTTTGATACTTGATAGTAACCATGAATCATCATCTTAATAAAACATTCATCTAAAAATTCGTTGCATGCTGTAAACTTTAATAAAGTGAAATTGGTTTCCAAACTCTTTCTAGTTCCCTTTTTTTGTTCGGATAATGGGTCTTTTTTTATCCTCTTGTTGTTTGGATTATCAAAGATCATAGTAACATGTACAAAATACTCCAAGCCCAAGGTACACCTCTCAGGAACTTTATCTCCTGCCCTTTTGTAATACTGCTGACCTCTCGCTAGGTCAATGCAACTTCAATTATTTCTGTCATGACAAAGAATTACCAAAATTTCCTTCCAACCGGACTCTTCTTTTGACCAATATAGGAGAAACCAAAAAAAAAAAAAAAAAAGAAAGGAGCAGGAACAGTCATAAAACTGGCGACTTTAGTGGATGTTGCATGACAACCCTGTGCATGGGAATGTGTTCTTTGATCACTGAAATTGAGGGACACGGCTCTCCAAAAATTAAGAAATTAATGAAAAAAAGCTTGAAAGGTGTGCCTGTAGTTATAATCTAATTGAATATAGCAAAATGATCTAAACAGCTCTGTGATCTTCAACATTTTGCATATTCCATCTTCATGTATGAAGTTAAATATACTTGTCAATAGTCATCCTATTGAATTGCTACACAGAGTCTCTGTAACCAGCCCTGCCTTTGACAAATTTAAGCACTGATGTCTAATCTTGAAGCATACCGACTTCACCACTCTGATCATTGTTGGTACAATGCTATAATAGATTGATTCCTCCCCACCACCCCTGCCTTCCCTATTGGTCATGTCCCTCAAATATTGATTTTCATACTTGCTGAATAATTAAATTACTTGTATGTATCACGGCATGGCTATTTCATAATCGTTTCATGTCTCTGCCTTTCAGTTTGCTGTTTGATACCATGGGAATAAATTTTGAGAAGTACCAGAAGTATGAATGTGGGAGGGGAAAGCAGGACGCAGAGCTTCCCTATATCCAGCCACTTTTTATTATCAAACTTGTGTAGAACTATTGTTACATTGTTGGCCCAATGGGTAATTTATGTTTCAGAGCTG</genome_strand>
        <mrna_strand>CGATCAATTTGCTTGCTGTTATACCAGGAGGTTCATCTGTTCCACTGCTTCCCAAGAACATATGTGAGGATGTACTTATGGATTTTGATGCACTCAAAGCTGTGCAGTCAGGGTTGGGAACTGCTGCTGTAATTGTCATGGACAAGTCAACTGATGTTGTAGATGCAATTGCAAGGCTCTCGTACTTCTACAAGCACGAGAGTTGTGGTCAATGTACACCATGTAGGGAAGGCACAGGATGGCTTTGGATGATCATGGAAAGAATGAAGGTTGGCAATGCAAAGTTGGAAGAGATTGACATGCTCCAAGAGGTGACAAAACAGATTGAAGGGCACACTATTTGTGCCTTGGGTGACGCTGCTGCTTGGCCAGTACAGGGTCTTATTAGGCACTTTAGACCAGAGCTAGAAAGGAGGATCAGGGAGCATGCAGAGAGGGAGCTACAACAGGCAGCTGCTGCTTGATTCTTTTATGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCTGTTTGATACCATGGGAATAAATTTTGAGAAGTACCAGAAGTATGAATGTGGGAGGGGAAAGCAGGACGCAGAGCTTCCCTATATCCAGCCACTTTTTATTATCAAACTTGTGTAGAACTATTGTTACATTGTTGGCCCAATGGGTAATTTATGTTTCAGAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E592078" ref_strand="-" ref_description="SGN-E592078 [45803]">
      <seq>actcaaagctgtgcagtcagggttggggactgctgctgtaattgtcatggacaagtcaactgatgttgtagatgcaattgcaaggctctcgtacttctataagcacgagagctgtggtcaatgtacaccatgtagggaaggcacagggtggctttggatgatcatggaaagaatgaaggttggcaatgcaaagttggaagagattgacatgctccaagaggtgacaaaacagattgaggggcataccatttgtgccttgggtgacgctgctgcttggccagtgcagggtcttattaggcactttagaccagagctagaaaggaggatcagggagcacgcagagagagagctacaacaggcggctgctgcttgatttttttgaaagtttgctgtttgataccatggaataaattttgagaagtaccagaagtatgaatgtgggaggggaaagcaggacgcagagcttccctatatccagccactttttattgtcaaacttgtgtaaaactattgttacattgttggcccaatgggtaatttatgtttcagagctggtacatctaatgtcttagtgtttccttacattatcattgccatggctttgatagttgaaagatgctttaatattagtcatgttgcgttaaataagagctacacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="61000" stop="63209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61300" g_stop="61684" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61685" i_stop="62633" i_length="949">
            <donor d_prob="0.999" d_score="0.86"/>
            <acceptor a_prob="0.424" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62634" g_stop="62909" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="660" r_length="275" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E592078" ref_strand="-">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E592078" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="61300" e_stop="61684"/>
          <exon e_start="62634" e_stop="62909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCAAAGCTGTGCAGTCAGGGTTGGGAACTGCTGCTGTAATTGTCATGGACAAGTCAACTGATGTTGTAGATGCAATTGCAAGGCTCTCGTACTTCTACAAGCACGAGAGTTGTGGTCAATGTACACCATGTAGGGAAGGCACAGGATGGCTTTGGATGATCATGGAAAGAATGAAGGTTGGCAATGCAAAGTTGGAAGAGATTGACATGCTCCAAGAGGTGACAAAACAGATTGAAGGGCACACTATTTGTGCCTTGGGTGACGCTGCTGCTTGGCCAGTACAGGGTCTTATTAGGCACTTTAGACCAGAGCTAGAAAGGAGGATCAGGGAGCATGCAGAGAGGGAGCTACAACAGGCAGCTGCTGCTTGATTCTTTTATGAGGTTGGTTCTTAAACTTTTGTTACATTTACATTGTAGTGTTTGATACTTGATAGTAACCATGAATCATCATCTTAATAAAACATTCATCTAAAAATTCGTTGCATGCTGTAAACTTTAATAAAGTGAAATTGGTTTCCAAACTCTTTCTAGTTCCCTTTTTTTGTTCGGATAATGGGTCTTTTTTTATCCTCTTGTTGTTTGGATTATCAAAGATCATAGTAACATGTACAAAATACTCCAAGCCCAAGGTACACCTCTCAGGAACTTTATCTCCTGCCCTTTTGTAATACTGCTGACCTCTCGCTAGGTCAATGCAACTTCAATTATTTCTGTCATGACAAAGAATTACCAAAATTTCCTTCCAACCGGACTCTTCTTTTGACCAATATAGGAGAAACCAAAAAAAAAAAAAAAAAAGAAAGGAGCAGGAACAGTCATAAAACTGGCGACTTTAGTGGATGTTGCATGACAACCCTGTGCATGGGAATGTGTTCTTTGATCACTGAAATTGAGGGACACGGCTCTCCAAAAATTAAGAAATTAATGAAAAAAAGCTTGAAAGGTGTGCCTGTAGTTATAATCTAATTGAATATAGCAAAATGATCTAAACAGCTCTGTGATCTTCAACATTTTGCATATTCCATCTTCATGTATGAAGTTAAATATACTTGTCAATAGTCATCCTATTGAATTGCTACACAGAGTCTCTGTAACCAGCCCTGCCTTTGACAAATTTAAGCACTGATGTCTAATCTTGAAGCATACCGACTTCACCACTCTGATCATTGTTGGTACAATGCTATAATAGATTGATTCCTCCCCACCACCCCTGCCTTCCCTATTGGTCATGTCCCTCAAATATTGATTTTCATACTTGCTGAATAATTAAATTACTTGTATGTATCACGGCATGGCTATTTCATAATCGTTTCATGTCTCTGCCTTTCAGTTTGCTGTTTGATACCATGGGAATAAATTTTGAGAAGTACCAGAAGTATGAATGTGGGAGGGGAAAGCAGGACGCAGAGCTTCCCTATATCCAGCCACTTTTTATTATCAAACTTGTGTAGAACTATTGTTACATTGTTGGCCCAATGGGTAATTTATGTTTCAGAGCTGGTACATCTAATGTCTTAATGTTTCCTTACATTATCATTGCCATGGTTTTGGTAGTTGAAAGATGCTTTAATATTTGTCATGTTGCGTTAAATAAGATCTACACTTT</genome_strand>
        <mrna_strand>ACTCAAAGCTGTGCAGTCAGGGTTGGGGACTGCTGCTGTAATTGTCATGGACAAGTCAACTGATGTTGTAGATGCAATTGCAAGGCTCTCGTACTTCTATAAGCACGAGAGCTGTGGTCAATGTACACCATGTAGGGAAGGCACAGGGTGGCTTTGGATGATCATGGAAAGAATGAAGGTTGGCAATGCAAAGTTGGAAGAGATTGACATGCTCCAAGAGGTGACAAAACAGATTGAGGGGCATACCATTTGTGCCTTGGGTGACGCTGCTGCTTGGCCAGTGCAGGGTCTTATTAGGCACTTTAGACCAGAGCTAGAAAGGAGGATCAGGGAGCACGCAGAGAGAGAGCTACAACAGGCGGCTGCTGCTTGATTTTTTTGAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCTGTTTGATACCAT-GGAATAAATTTTGAGAAGTACCAGAAGTATGAATGTGGGAGGGGAAAGCAGGACGCAGAGCTTCCCTATATCCAGCCACTTTTTATTGTCAAACTTGTGTAAAACTATTGTTACATTGTTGGCCCAATGGGTAATTTATGTTTCAGAGCTGGTACATCTAATGTCTTAGTGTTTCCTTACATTATCATTGCCATGGCTTTGATAGTTGAAAGATGCTTTAATATTAGTCATGTTGCGTTAAATAAGAGCTACACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E592212" ref_strand="+" ref_description="SGN-E592212 [45941]">
      <seq>gtcaggttggggactgctgctgtaattgtcatggacaagtcaactgatgttgtagatgcaattgcaaggctctcatacttctataagcacgagagctgtggtcaatgtacaccatgtagggaaggcacagggtggctttggatgatcatggaaagaatgaaggttggcaatgcaaagttggaagagattgacatgctccaagaggtgacaaaacagattgaagggcataccatttgtgccttgggtgatgctgctgcttggccagtgcagggtcttattaggcactttagaccagagctagaaaggaggatcagggagcacgcagagagagagctacaacaggcggctgctgcttgatttttttaaaagtttgctgtttgataccatggaataaattttgagaagtaccagaagtatgaatgtgggaggggaaagcaggacgcagagcttccctatatccagccgctttttattgtcaaacttgtgtaaaactattgttacattgttggcccaatgggtaatttatgtttcagagctggtacatctaatgtcttaatgtttccttacattatcattgccatggctttgatagttgaaagatgctttaatatttgtcatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="61015" stop="63185"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61315" g_stop="61684" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61685" i_stop="62633" i_length="949">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.424" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62634" g_stop="62885" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="620" r_length="251" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E592212" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E592212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61315" e_stop="61684"/>
          <exon e_start="62634" e_stop="62885"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAGGGTTGGGAACTGCTGCTGTAATTGTCATGGACAAGTCAACTGATGTTGTAGATGCAATTGCAAGGCTCTCGTACTTCTACAAGCACGAGAGTTGTGGTCAATGTACACCATGTAGGGAAGGCACAGGATGGCTTTGGATGATCATGGAAAGAATGAAGGTTGGCAATGCAAAGTTGGAAGAGATTGACATGCTCCAAGAGGTGACAAAACAGATTGAAGGGCACACTATTTGTGCCTTGGGTGACGCTGCTGCTTGGCCAGTACAGGGTCTTATTAGGCACTTTAGACCAGAGCTAGAAAGGAGGATCAGGGAGCATGCAGAGAGGGAGCTACAACAGGCAGCTGCTGCTTGATTCTTTTATGAGGTTGGTTCTTAAACTTTTGTTACATTTACATTGTAGTGTTTGATACTTGATAGTAACCATGAATCATCATCTTAATAAAACATTCATCTAAAAATTCGTTGCATGCTGTAAACTTTAATAAAGTGAAATTGGTTTCCAAACTCTTTCTAGTTCCCTTTTTTTGTTCGGATAATGGGTCTTTTTTTATCCTCTTGTTGTTTGGATTATCAAAGATCATAGTAACATGTACAAAATACTCCAAGCCCAAGGTACACCTCTCAGGAACTTTATCTCCTGCCCTTTTGTAATACTGCTGACCTCTCGCTAGGTCAATGCAACTTCAATTATTTCTGTCATGACAAAGAATTACCAAAATTTCCTTCCAACCGGACTCTTCTTTTGACCAATATAGGAGAAACCAAAAAAAAAAAAAAAAAAGAAAGGAGCAGGAACAGTCATAAAACTGGCGACTTTAGTGGATGTTGCATGACAACCCTGTGCATGGGAATGTGTTCTTTGATCACTGAAATTGAGGGACACGGCTCTCCAAAAATTAAGAAATTAATGAAAAAAAGCTTGAAAGGTGTGCCTGTAGTTATAATCTAATTGAATATAGCAAAATGATCTAAACAGCTCTGTGATCTTCAACATTTTGCATATTCCATCTTCATGTATGAAGTTAAATATACTTGTCAATAGTCATCCTATTGAATTGCTACACAGAGTCTCTGTAACCAGCCCTGCCTTTGACAAATTTAAGCACTGATGTCTAATCTTGAAGCATACCGACTTCACCACTCTGATCATTGTTGGTACAATGCTATAATAGATTGATTCCTCCCCACCACCCCTGCCTTCCCTATTGGTCATGTCCCTCAAATATTGATTTTCATACTTGCTGAATAATTAAATTACTTGTATGTATCACGGCATGGCTATTTCATAATCGTTTCATGTCTCTGCCTTTCAGTTTGCTGTTTGATACCATGGGAATAAATTTTGAGAAGTACCAGAAGTATGAATGTGGGAGGGGAAAGCAGGACGCAGAGCTTCCCTATATCCAGCCACTTTTTATTATCAAACTTGTGTAGAACTATTGTTACATTGTTGGCCCAATGGGTAATTTATGTTTCAGAGCTGGTACATCTAATGTCTTAATGTTTCCTTACATTATCATTGCCATGGTTTTGGTAGTTGAAAGATGCTTTAATATTTGTCATGT</genome_strand>
        <mrna_strand>GTCAG-GTTGGGGACTGCTGCTGTAATTGTCATGGACAAGTCAACTGATGTTGTAGATGCAATTGCAAGGCTCTCATACTTCTATAAGCACGAGAGCTGTGGTCAATGTACACCATGTAGGGAAGGCACAGGGTGGCTTTGGATGATCATGGAAAGAATGAAGGTTGGCAATGCAAAGTTGGAAGAGATTGACATGCTCCAAGAGGTGACAAAACAGATTGAAGGGCATACCATTTGTGCCTTGGGTGATGCTGCTGCTTGGCCAGTGCAGGGTCTTATTAGGCACTTTAGACCAGAGCTAGAAAGGAGGATCAGGGAGCACGCAGAGAGAGAGCTACAACAGGCGGCTGCTGCTTGATTTTTTTAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCTGTTTGATACCAT-GGAATAAATTTTGAGAAGTACCAGAAGTATGAATGTGGGAGGGGAAAGCAGGACGCAGAGCTTCCCTATATCCAGCCGCTTTTTATTGTCAAACTTGTGTAAAACTATTGTTACATTGTTGGCCCAATGGGTAATTTATGTTTCAGAGCTGGTACATCTAATGTCTTAATGTTTCCTTACATTATCATTGCCATGGCTTTGATAGTTGAAAGATGCTTTAATATTTGTCATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E465465" ref_strand="+" ref_description="SGN-E465465 [cPRO-21-O9]">
      <seq>cgtacttctataagcacgagagctgtggtcaatgtacaccatgtagggaaggcacagggtggctttggatgatcatggaaagaatgaaggttggcaatgcaaagttggaagagattgacatgctccaagaggtgacaaaacagattgaagggcataccatttgtgccttgggtgatgctgctgcttggccagtgcagggtcttattaggcactttagaccagagctagaaaggaggatcagggagcacgcagagagagagctacaacaggcggctgctgcttgatttttttaaaagtttgctgtttgataccatggaataaattttgagaagtaccacaagtatgaatgtgggaggggaaaacaggacgcaaaacttccctatatccagccgctttttattgtcaaacttgtgtaaaactattgttacattgttggccccatgggtaatttatgtttccgagctgggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="61089" stop="63108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61389" g_stop="61684" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61685" i_stop="62633" i_length="949">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.424" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62634" g_stop="62808" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="470" r_length="174" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E465465" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E465465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61389" e_stop="61684"/>
          <exon e_start="62634" e_stop="62808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTACTTCTACAAGCACGAGAGTTGTGGTCAATGTACACCATGTAGGGAAGGCACAGGATGGCTTTGGATGATCATGGAAAGAATGAAGGTTGGCAATGCAAAGTTGGAAGAGATTGACATGCTCCAAGAGGTGACAAAACAGATTGAAGGGCACACTATTTGTGCCTTGGGTGACGCTGCTGCTTGGCCAGTACAGGGTCTTATTAGGCACTTTAGACCAGAGCTAGAAAGGAGGATCAGGGAGCATGCAGAGAGGGAGCTACAACAGGCAGCTGCTGCTTGATTCTTTTATGAGGTTGGTTCTTAAACTTTTGTTACATTTACATTGTAGTGTTTGATACTTGATAGTAACCATGAATCATCATCTTAATAAAACATTCATCTAAAAATTCGTTGCATGCTGTAAACTTTAATAAAGTGAAATTGGTTTCCAAACTCTTTCTAGTTCCCTTTTTTTGTTCGGATAATGGGTCTTTTTTTATCCTCTTGTTGTTTGGATTATCAAAGATCATAGTAACATGTACAAAATACTCCAAGCCCAAGGTACACCTCTCAGGAACTTTATCTCCTGCCCTTTTGTAATACTGCTGACCTCTCGCTAGGTCAATGCAACTTCAATTATTTCTGTCATGACAAAGAATTACCAAAATTTCCTTCCAACCGGACTCTTCTTTTGACCAATATAGGAGAAACCAAAAAAAAAAAAAAAAAAGAAAGGAGCAGGAACAGTCATAAAACTGGCGACTTTAGTGGATGTTGCATGACAACCCTGTGCATGGGAATGTGTTCTTTGATCACTGAAATTGAGGGACACGGCTCTCCAAAAATTAAGAAATTAATGAAAAAAAGCTTGAAAGGTGTGCCTGTAGTTATAATCTAATTGAATATAGCAAAATGATCTAAACAGCTCTGTGATCTTCAACATTTTGCATATTCCATCTTCATGTATGAAGTTAAATATACTTGTCAATAGTCATCCTATTGAATTGCTACACAGAGTCTCTGTAACCAGCCCTGCCTTTGACAAATTTAAGCACTGATGTCTAATCTTGAAGCATACCGACTTCACCACTCTGATCATTGTTGGTACAATGCTATAATAGATTGATTCCTCCCCACCACCCCTGCCTTCCCTATTGGTCATGTCCCTCAAATATTGATTTTCATACTTGCTGAATAATTAAATTACTTGTATGTATCACGGCATGGCTATTTCATAATCGTTTCATGTCTCTGCCTTTCAGTTTGCTGTTTGATACCATGGGAATAAATTTTGAGAAGTACCAGAAGTATGAATGTGGGAGGGGAAAGCAGGACGCAGAGCTTCCCTATATCCAGCCACTTTTTATTATCAAACTTGTGTAGAACTATTGTTACATTGTTGGCCCAATGGGTAATTTATGTTTCAGAGCTGGTACA</genome_strand>
        <mrna_strand>CGTACTTCTATAAGCACGAGAGCTGTGGTCAATGTACACCATGTAGGGAAGGCACAGGGTGGCTTTGGATGATCATGGAAAGAATGAAGGTTGGCAATGCAAAGTTGGAAGAGATTGACATGCTCCAAGAGGTGACAAAACAGATTGAAGGGCATACCATTTGTGCCTTGGGTGATGCTGCTGCTTGGCCAGTGCAGGGTCTTATTAGGCACTTTAGACCAGAGCTAGAAAGGAGGATCAGGGAGCACGCAGAGAGAGAGCTACAACAGGCGGCTGCTGCTTGATTTTTTTAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCTGTTTGATACCAT-GGAATAAATTTTGAGAAGTACCACAAGTATGAATGTGGGAGGGGAAAACAGGACGCAAAACTTCCCTATATCCAGCCGCTTTTTATTGTCAAACTTGTGTAAAACTATTGTTACATTGTTGGCCCCATGGGTAATTTATGTTTCCGAGCTGGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E318756" ref_strand="+" ref_description="SGN-E318756 [cTOB-11-E17]">
      <seq>gtcaatgtacaccatgtagggaaggcacaggatggctttggatgatcatggaaagaatgaaggttggcaatgcaaagttggaagagattgacatgctccaagaggtgacaaaacagattgaagggcacactatttgtgccttgggtgacgctgctgcttggccagtacagggtcttattaggcactttagaccagagctagaaaggaggatcagggagcatgcagagagggagctacaacaggcagctgctgcttgattcttttatgagtttgctgtttgataccatgggaataaattttgagaagtaccagaagtatgaatgtgggaggggaaagcaggacgcagagcttccctatatccagccactttttattatcaaacttgtgtagaactattgttacattgttggcccaatgggtaatttatgtttcagagctggtacatctaatgtcttaatgtttccttacattatcattgnccatggtttggtagttgaaagatgctttaatatttgtcatggtgcgttaaaaaagatctacactttggcaattccaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="61116" stop="63223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61416" g_stop="61684" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61685" i_stop="62633" i_length="949">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.424" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62634" g_stop="62923" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="559" r_length="290" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E318756" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61416" e_stop="61684"/>
          <exon e_start="62634" e_stop="62923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAATGTACACCATGTAGGGAAGGCACAGGATGGCTTTGGATGATCATGGAAAGAATGAAGGTTGGCAATGCAAAGTTGGAAGAGATTGACATGCTCCAAGAGGTGACAAAACAGATTGAAGGGCACACTATTTGTGCCTTGGGTGACGCTGCTGCTTGGCCAGTACAGGGTCTTATTAGGCACTTTAGACCAGAGCTAGAAAGGAGGATCAGGGAGCATGCAGAGAGGGAGCTACAACAGGCAGCTGCTGCTTGATTCTTTTATGAGGTTGGTTCTTAAACTTTTGTTACATTTACATTGTAGTGTTTGATACTTGATAGTAACCATGAATCATCATCTTAATAAAACATTCATCTAAAAATTCGTTGCATGCTGTAAACTTTAATAAAGTGAAATTGGTTTCCAAACTCTTTCTAGTTCCCTTTTTTTGTTCGGATAATGGGTCTTTTTTTATCCTCTTGTTGTTTGGATTATCAAAGATCATAGTAACATGTACAAAATACTCCAAGCCCAAGGTACACCTCTCAGGAACTTTATCTCCTGCCCTTTTGTAATACTGCTGACCTCTCGCTAGGTCAATGCAACTTCAATTATTTCTGTCATGACAAAGAATTACCAAAATTTCCTTCCAACCGGACTCTTCTTTTGACCAATATAGGAGAAACCAAAAAAAAAAAAAAAAAAGAAAGGAGCAGGAACAGTCATAAAACTGGCGACTTTAGTGGATGTTGCATGACAACCCTGTGCATGGGAATGTGTTCTTTGATCACTGAAATTGAGGGACACGGCTCTCCAAAAATTAAGAAATTAATGAAAAAAAGCTTGAAAGGTGTGCCTGTAGTTATAATCTAATTGAATATAGCAAAATGATCTAAACAGCTCTGTGATCTTCAACATTTTGCATATTCCATCTTCATGTATGAAGTTAAATATACTTGTCAATAGTCATCCTATTGAATTGCTACACAGAGTCTCTGTAACCAGCCCTGCCTTTGACAAATTTAAGCACTGATGTCTAATCTTGAAGCATACCGACTTCACCACTCTGATCATTGTTGGTACAATGCTATAATAGATTGATTCCTCCCCACCACCCCTGCCTTCCCTATTGGTCATGTCCCTCAAATATTGATTTTCATACTTGCTGAATAATTAAATTACTTGTATGTATCACGGCATGGCTATTTCATAATCGTTTCATGTCTCTGCCTTTCAGTTTGCTGTTTGATACCATGGGAATAAATTTTGAGAAGTACCAGAAGTATGAATGTGGGAGGGGAAAGCAGGACGCAGAGCTTCCCTATATCCAGCCACTTTTTATTATCAAACTTGTGTAGAACTATTGTTACATTGTTGGCCCAATGGGTAATTTATGTTTCAGAGCTGGTACATCTAATGTCTTAATGTTTCCTTACATTATCATTG-CCATGGTTTTGGTAGTTGAAAGATGCTTTAATATTTGTCATGTTGCGTTAAATAAGATCTACACTTTGGCAATTCCAATTT</genome_strand>
        <mrna_strand>GTCAATGTACACCATGTAGGGAAGGCACAGGATGGCTTTGGATGATCATGGAAAGAATGAAGGTTGGCAATGCAAAGTTGGAAGAGATTGACATGCTCCAAGAGGTGACAAAACAGATTGAAGGGCACACTATTTGTGCCTTGGGTGACGCTGCTGCTTGGCCAGTACAGGGTCTTATTAGGCACTTTAGACCAGAGCTAGAAAGGAGGATCAGGGAGCATGCAGAGAGGGAGCTACAACAGGCAGCTGCTGCTTGATTCTTTTATGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCTGTTTGATACCATGGGAATAAATTTTGAGAAGTACCAGAAGTATGAATGTGGGAGGGGAAAGCAGGACGCAGAGCTTCCCTATATCCAGCCACTTTTTATTATCAAACTTGTGTAGAACTATTGTTACATTGTTGGCCCAATGGGTAATTTATGTTTCAGAGCTGGTACATCTAATGTCTTAATGTTTCCTTACATTATCATTGNCCATGG-TTTGGTAGTTGAAAGATGCTTTAATATTTGTCATGGTGCGTTAAAAAAGATCTACACTTTGGCAATTCCAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E318864" ref_strand="+" ref_description="SGN-E318864 [cTOB-11-E21]">
      <seq>gtcaatgtacaccatgtagggaaggcacaggatggctttggatgatcatggaaagaatgaaggttggcaatgcaaagttggaagagattgacatgctccaagaggtgacaaaacagattgaagggcacactatttgtgccttgggtgacgctgctgcttggccagtacagggtcttattaggcactttagaccagagctagaaaggaggatcagggagcatgcagagagggagctacaacaggcagctgctgcttgattcttttatgagtttgctgtttgataccatgggaataaattttgagaagtaccagaagtatgaatgtgggaggggaaagcangacgcanagcttccctatatccagccactttttattatcaaacttgtgtagaactattgttacattgttggcccaatgggtaatttatgtttcagagctggtacatctaatgtcttaatgtttccttacattatcattgccatggttttggtagttgaaagatgctttaatatttgtcatgttgcgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="61116" stop="63191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61416" g_stop="61684" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61685" i_stop="62633" i_length="949">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.424" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62634" g_stop="62891" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="527" r_length="258" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E318864" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61416" e_stop="61684"/>
          <exon e_start="62634" e_stop="62891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAATGTACACCATGTAGGGAAGGCACAGGATGGCTTTGGATGATCATGGAAAGAATGAAGGTTGGCAATGCAAAGTTGGAAGAGATTGACATGCTCCAAGAGGTGACAAAACAGATTGAAGGGCACACTATTTGTGCCTTGGGTGACGCTGCTGCTTGGCCAGTACAGGGTCTTATTAGGCACTTTAGACCAGAGCTAGAAAGGAGGATCAGGGAGCATGCAGAGAGGGAGCTACAACAGGCAGCTGCTGCTTGATTCTTTTATGAGGTTGGTTCTTAAACTTTTGTTACATTTACATTGTAGTGTTTGATACTTGATAGTAACCATGAATCATCATCTTAATAAAACATTCATCTAAAAATTCGTTGCATGCTGTAAACTTTAATAAAGTGAAATTGGTTTCCAAACTCTTTCTAGTTCCCTTTTTTTGTTCGGATAATGGGTCTTTTTTTATCCTCTTGTTGTTTGGATTATCAAAGATCATAGTAACATGTACAAAATACTCCAAGCCCAAGGTACACCTCTCAGGAACTTTATCTCCTGCCCTTTTGTAATACTGCTGACCTCTCGCTAGGTCAATGCAACTTCAATTATTTCTGTCATGACAAAGAATTACCAAAATTTCCTTCCAACCGGACTCTTCTTTTGACCAATATAGGAGAAACCAAAAAAAAAAAAAAAAAAGAAAGGAGCAGGAACAGTCATAAAACTGGCGACTTTAGTGGATGTTGCATGACAACCCTGTGCATGGGAATGTGTTCTTTGATCACTGAAATTGAGGGACACGGCTCTCCAAAAATTAAGAAATTAATGAAAAAAAGCTTGAAAGGTGTGCCTGTAGTTATAATCTAATTGAATATAGCAAAATGATCTAAACAGCTCTGTGATCTTCAACATTTTGCATATTCCATCTTCATGTATGAAGTTAAATATACTTGTCAATAGTCATCCTATTGAATTGCTACACAGAGTCTCTGTAACCAGCCCTGCCTTTGACAAATTTAAGCACTGATGTCTAATCTTGAAGCATACCGACTTCACCACTCTGATCATTGTTGGTACAATGCTATAATAGATTGATTCCTCCCCACCACCCCTGCCTTCCCTATTGGTCATGTCCCTCAAATATTGATTTTCATACTTGCTGAATAATTAAATTACTTGTATGTATCACGGCATGGCTATTTCATAATCGTTTCATGTCTCTGCCTTTCAGTTTGCTGTTTGATACCATGGGAATAAATTTTGAGAAGTACCAGAAGTATGAATGTGGGAGGGGAAAGCAGGACGCAGAGCTTCCCTATATCCAGCCACTTTTTATTATCAAACTTGTGTAGAACTATTGTTACATTGTTGGCCCAATGGGTAATTTATGTTTCAGAGCTGGTACATCTAATGTCTTAATGTTTCCTTACATTATCATTGCCATGGTTTTGGTAGTTGAAAGATGCTTTAATATTTGTCATGTTGCGTT</genome_strand>
        <mrna_strand>GTCAATGTACACCATGTAGGGAAGGCACAGGATGGCTTTGGATGATCATGGAAAGAATGAAGGTTGGCAATGCAAAGTTGGAAGAGATTGACATGCTCCAAGAGGTGACAAAACAGATTGAAGGGCACACTATTTGTGCCTTGGGTGACGCTGCTGCTTGGCCAGTACAGGGTCTTATTAGGCACTTTAGACCAGAGCTAGAAAGGAGGATCAGGGAGCATGCAGAGAGGGAGCTACAACAGGCAGCTGCTGCTTGATTCTTTTATGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCTGTTTGATACCATGGGAATAAATTTTGAGAAGTACCAGAAGTATGAATGTGGGAGGGGAAAGCANGACGCANAGCTTCCCTATATCCAGCCACTTTTTATTATCAAACTTGTGTAGAACTATTGTTACATTGTTGGCCCAATGGGTAATTTATGTTTCAGAGCTGGTACATCTAATGTCTTAATGTTTCCTTACATTATCATTGCCATGGTTTTGGTAGTTGAAAGATGCTTTAATATTTGTCATGTTGCGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E318542" ref_strand="+" ref_description="SGN-E318542 [cTOB-10-F18]">
      <seq>gtcaatgtacaccatgtagggaaggcacaggatggctttggatgatcatggaaagaatgaaggttggcaatgcaaagttggaagagattgacatgctccaagaggtgacaaaacagattgaagggcacactatttgtgccttgggtgacgctgctgcttggccagtacagggtcttattaggcactttagaccagagctagaaaggaggatcagggagcatgcagagagggagctacaacaggcagctgctgcttgattcttttatgagtgtgctgattgataccatgggaataaattctgagaagtaccagaagtatgaatgtgggaggggaaagcaggactcaaagcttccctatatccagccactttttattatcaaacttgtgtacaactattgttacattgtaggcccaatgggtaatttatgtttcagagctggtacatctaatgtcttaatgtttccttacattatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="61116" stop="63139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61416" g_stop="61684" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61685" i_stop="62633" i_length="949">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.424" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62634" g_stop="62839" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="475" r_length="206" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E318542" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318542" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61416" e_stop="61684"/>
          <exon e_start="62634" e_stop="62839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAATGTACACCATGTAGGGAAGGCACAGGATGGCTTTGGATGATCATGGAAAGAATGAAGGTTGGCAATGCAAAGTTGGAAGAGATTGACATGCTCCAAGAGGTGACAAAACAGATTGAAGGGCACACTATTTGTGCCTTGGGTGACGCTGCTGCTTGGCCAGTACAGGGTCTTATTAGGCACTTTAGACCAGAGCTAGAAAGGAGGATCAGGGAGCATGCAGAGAGGGAGCTACAACAGGCAGCTGCTGCTTGATTCTTTTATGAGGTTGGTTCTTAAACTTTTGTTACATTTACATTGTAGTGTTTGATACTTGATAGTAACCATGAATCATCATCTTAATAAAACATTCATCTAAAAATTCGTTGCATGCTGTAAACTTTAATAAAGTGAAATTGGTTTCCAAACTCTTTCTAGTTCCCTTTTTTTGTTCGGATAATGGGTCTTTTTTTATCCTCTTGTTGTTTGGATTATCAAAGATCATAGTAACATGTACAAAATACTCCAAGCCCAAGGTACACCTCTCAGGAACTTTATCTCCTGCCCTTTTGTAATACTGCTGACCTCTCGCTAGGTCAATGCAACTTCAATTATTTCTGTCATGACAAAGAATTACCAAAATTTCCTTCCAACCGGACTCTTCTTTTGACCAATATAGGAGAAACCAAAAAAAAAAAAAAAAAAGAAAGGAGCAGGAACAGTCATAAAACTGGCGACTTTAGTGGATGTTGCATGACAACCCTGTGCATGGGAATGTGTTCTTTGATCACTGAAATTGAGGGACACGGCTCTCCAAAAATTAAGAAATTAATGAAAAAAAGCTTGAAAGGTGTGCCTGTAGTTATAATCTAATTGAATATAGCAAAATGATCTAAACAGCTCTGTGATCTTCAACATTTTGCATATTCCATCTTCATGTATGAAGTTAAATATACTTGTCAATAGTCATCCTATTGAATTGCTACACAGAGTCTCTGTAACCAGCCCTGCCTTTGACAAATTTAAGCACTGATGTCTAATCTTGAAGCATACCGACTTCACCACTCTGATCATTGTTGGTACAATGCTATAATAGATTGATTCCTCCCCACCACCCCTGCCTTCCCTATTGGTCATGTCCCTCAAATATTGATTTTCATACTTGCTGAATAATTAAATTACTTGTATGTATCACGGCATGGCTATTTCATAATCGTTTCATGTCTCTGCCTTTCAGTTTGCTGTTTGATACCATGGGAATAAATTTTGAGAAGTACCAGAAGTATGAATGTGGGAGGGGAAAGCAGGACGCAGAGCTTCCCTATATCCAGCCACTTTTTATTATCAAACTTGTGTAGAACTATTGTTACATTGTTGGCCCAATGGGTAATTTATGTTTCAGAGCTGGTACATCTAATGTCTTAATGTTTCCTTACATTATCA</genome_strand>
        <mrna_strand>GTCAATGTACACCATGTAGGGAAGGCACAGGATGGCTTTGGATGATCATGGAAAGAATGAAGGTTGGCAATGCAAAGTTGGAAGAGATTGACATGCTCCAAGAGGTGACAAAACAGATTGAAGGGCACACTATTTGTGCCTTGGGTGACGCTGCTGCTTGGCCAGTACAGGGTCTTATTAGGCACTTTAGACCAGAGCTAGAAAGGAGGATCAGGGAGCATGCAGAGAGGGAGCTACAACAGGCAGCTGCTGCTTGATTCTTTTATGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCTGATTGATACCATGGGAATAAATTCTGAGAAGTACCAGAAGTATGAATGTGGGAGGGGAAAGCAGGACTCAAAGCTTCCCTATATCCAGCCACTTTTTATTATCAAACTTGTGTACAACTATTGTTACATTGTAGGCCCAATGGGTAATTTATGTTTCAGAGCTGGTACATCTAATGTCTTAATGTTTCCTTACATTATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E282301" ref_strand="+" ref_description="SGN-E282301 [cLES-4-P12]">
      <seq>aaagttggaagagattgacatgctccaagaggtgacaaaacagattgaagggcacactatttgtgccttgggtgacgctgctgcttggccagtacagggtcttattaggcactttagaccagagctagaaaggaggatcagggagcatgcagagagggagctacaacaggcagctgctgcttgattcttttatgagtttgctgtttgataccatgggaataaattttgagaagtaccagaagtatgaatgtgggaggggaaagcaggacgcagagcttccctatatccagccactttttattatcaaacttgtgtagaactattgttacattgttggcccaatgggtaatttatgtttcagagctggtacatctaatgtcttaatgtttccttacattatcattgccatggttttggtagttgaaagatgctttaatatttgtcatgttgcgttaaataagatctacactttggcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="61189" stop="63214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61489" g_stop="61684" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61685" i_stop="62633" i_length="949">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.424" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62634" g_stop="62922" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="485" r_length="289" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E282301" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61489" e_stop="61684"/>
          <exon e_start="62634" e_stop="62922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTGGAAGAGATTGACATGCTCCAAGAGGTGACAAAACAGATTGAAGGGCACACTATTTGTGCCTTGGGTGACGCTGCTGCTTGGCCAGTACAGGGTCTTATTAGGCACTTTAGACCAGAGCTAGAAAGGAGGATCAGGGAGCATGCAGAGAGGGAGCTACAACAGGCAGCTGCTGCTTGATTCTTTTATGAGGTTGGTTCTTAAACTTTTGTTACATTTACATTGTAGTGTTTGATACTTGATAGTAACCATGAATCATCATCTTAATAAAACATTCATCTAAAAATTCGTTGCATGCTGTAAACTTTAATAAAGTGAAATTGGTTTCCAAACTCTTTCTAGTTCCCTTTTTTTGTTCGGATAATGGGTCTTTTTTTATCCTCTTGTTGTTTGGATTATCAAAGATCATAGTAACATGTACAAAATACTCCAAGCCCAAGGTACACCTCTCAGGAACTTTATCTCCTGCCCTTTTGTAATACTGCTGACCTCTCGCTAGGTCAATGCAACTTCAATTATTTCTGTCATGACAAAGAATTACCAAAATTTCCTTCCAACCGGACTCTTCTTTTGACCAATATAGGAGAAACCAAAAAAAAAAAAAAAAAAGAAAGGAGCAGGAACAGTCATAAAACTGGCGACTTTAGTGGATGTTGCATGACAACCCTGTGCATGGGAATGTGTTCTTTGATCACTGAAATTGAGGGACACGGCTCTCCAAAAATTAAGAAATTAATGAAAAAAAGCTTGAAAGGTGTGCCTGTAGTTATAATCTAATTGAATATAGCAAAATGATCTAAACAGCTCTGTGATCTTCAACATTTTGCATATTCCATCTTCATGTATGAAGTTAAATATACTTGTCAATAGTCATCCTATTGAATTGCTACACAGAGTCTCTGTAACCAGCCCTGCCTTTGACAAATTTAAGCACTGATGTCTAATCTTGAAGCATACCGACTTCACCACTCTGATCATTGTTGGTACAATGCTATAATAGATTGATTCCTCCCCACCACCCCTGCCTTCCCTATTGGTCATGTCCCTCAAATATTGATTTTCATACTTGCTGAATAATTAAATTACTTGTATGTATCACGGCATGGCTATTTCATAATCGTTTCATGTCTCTGCCTTTCAGTTTGCTGTTTGATACCATGGGAATAAATTTTGAGAAGTACCAGAAGTATGAATGTGGGAGGGGAAAGCAGGACGCAGAGCTTCCCTATATCCAGCCACTTTTTATTATCAAACTTGTGTAGAACTATTGTTACATTGTTGGCCCAATGGGTAATTTATGTTTCAGAGCTGGTACATCTAATGTCTTAATGTTTCCTTACATTATCATTGCCATGGTTTTGGTAGTTGAAAGATGCTTTAATATTTGTCATGTTGCGTTAAATAAGATCTACACTTTGGCAATTCCAATT</genome_strand>
        <mrna_strand>AAAGTTGGAAGAGATTGACATGCTCCAAGAGGTGACAAAACAGATTGAAGGGCACACTATTTGTGCCTTGGGTGACGCTGCTGCTTGGCCAGTACAGGGTCTTATTAGGCACTTTAGACCAGAGCTAGAAAGGAGGATCAGGGAGCATGCAGAGAGGGAGCTACAACAGGCAGCTGCTGCTTGATTCTTTTATGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCTGTTTGATACCATGGGAATAAATTTTGAGAAGTACCAGAAGTATGAATGTGGGAGGGGAAAGCAGGACGCAGAGCTTCCCTATATCCAGCCACTTTTTATTATCAAACTTGTGTAGAACTATTGTTACATTGTTGGCCCAATGGGTAATTTATGTTTCAGAGCTGGTACATCTAATGTCTTAATGTTTCCTTACATTATCATTGCCATGGTTTTGGTAGTTGAAAGATGCTTTAATATTTGTCATGTTGCGTTAAATAAGATCTACACTTTGGCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E419686" ref_strand="-" ref_description="SGN-E419686 [STM-30-E3]">
      <seq>cagtgcagggtcttattaggcactttagaccagagctagaaaggaggatcagggagcacgcagagagagagctacaacaggcggctgctgcttgatttttttaaaagtttgctgtttgataccatggaataaattttggagaagtaccagaagtatgaatgtgggaggggaaagcaggacgcagagcttccctatatccagccactttttattgtcaaacttgtgtaaaactattgttacattgttggcccaatgggtaatttatgtttcagagctggtacatctaatgtcttaatgtttccttgcataaacattgtcatggctttgatagttgaaagatgctttaatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="61278" stop="63177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61578" g_stop="61684" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61685" i_stop="62633" i_length="949">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.424" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62634" g_stop="62877" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="351" r_length="244" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E419686" ref_strand="-">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E419686" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="61578" e_stop="61684"/>
          <exon e_start="62634" e_stop="62877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTACAGGGTCTTATTAGGCACTTTAGACCAGAGCTAGAAAGGAGGATCAGGGAGCATGCAGAGAGGGAGCTACAACAGGCAGCTGCTGCTTGATTCTTTTATGAGGTTGGTTCTTAAACTTTTGTTACATTTACATTGTAGTGTTTGATACTTGATAGTAACCATGAATCATCATCTTAATAAAACATTCATCTAAAAATTCGTTGCATGCTGTAAACTTTAATAAAGTGAAATTGGTTTCCAAACTCTTTCTAGTTCCCTTTTTTTGTTCGGATAATGGGTCTTTTTTTATCCTCTTGTTGTTTGGATTATCAAAGATCATAGTAACATGTACAAAATACTCCAAGCCCAAGGTACACCTCTCAGGAACTTTATCTCCTGCCCTTTTGTAATACTGCTGACCTCTCGCTAGGTCAATGCAACTTCAATTATTTCTGTCATGACAAAGAATTACCAAAATTTCCTTCCAACCGGACTCTTCTTTTGACCAATATAGGAGAAACCAAAAAAAAAAAAAAAAAAGAAAGGAGCAGGAACAGTCATAAAACTGGCGACTTTAGTGGATGTTGCATGACAACCCTGTGCATGGGAATGTGTTCTTTGATCACTGAAATTGAGGGACACGGCTCTCCAAAAATTAAGAAATTAATGAAAAAAAGCTTGAAAGGTGTGCCTGTAGTTATAATCTAATTGAATATAGCAAAATGATCTAAACAGCTCTGTGATCTTCAACATTTTGCATATTCCATCTTCATGTATGAAGTTAAATATACTTGTCAATAGTCATCCTATTGAATTGCTACACAGAGTCTCTGTAACCAGCCCTGCCTTTGACAAATTTAAGCACTGATGTCTAATCTTGAAGCATACCGACTTCACCACTCTGATCATTGTTGGTACAATGCTATAATAGATTGATTCCTCCCCACCACCCCTGCCTTCCCTATTGGTCATGTCCCTCAAATATTGATTTTCATACTTGCTGAATAATTAAATTACTTGTATGTATCACGGCATGGCTATTTCATAATCGTTTCATGTCTCTGCCTTTCAGTTTGCTGTTTGATACCATGGGAATAAATTTT-GAGAAGTACCAGAAGTATGAATGTGGGAGGGGAAAGCAGGACGCAGAGCTTCCCTATATCCAGCCACTTTTTATTATCAAACTTGTGTAGAACTATTGTTACATTGTTGGCCCAATGGGTAATTTATGTTTCAGAGCTGGTACATCTAATGTCTTAATGTTTCCTTACATTATCATTGCCATGGTTTTGGTAGTTGAAAGATGCTTTAATATT</genome_strand>
        <mrna_strand>CAGTGCAGGGTCTTATTAGGCACTTTAGACCAGAGCTAGAAAGGAGGATCAGGGAGCACGCAGAGAGAGAGCTACAACAGGCGGCTGCTGCTTGATTTTTTTAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCTGTTTGATACCAT-GGAATAAATTTTGGAGAAGTACCAGAAGTATGAATGTGGGAGGGGAAAGCAGGACGCAGAGCTTCCCTATATCCAGCCACTTTTTATTGTCAAACTTGTGTAAAACTATTGTTACATTGTTGGCCCAATGGGTAATTTATGTTTCAGAGCTGGTACATCTAATGTCTTAATGTTTCCTTGCATAAACATTGTCATGGCTTTGATAGTTGAAAGATGCTTTAATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E218352" ref_strand="+" ref_description="SGN-E218352 [cLEL-18-D13](-)">
      <seq>tagaaaggaggatcagggagcatgcagagagggagctacaacaggcagctgctgcttgattcttttatgagtttgctgtttgataccatgggaataaattttgagaagtaccagaagtatgaatgtgggaggggaaagcaggacgcagagcttccctatatccagccactttttattatcaaacttgtgtagaactattgttacattgttggcccaatgggtaatttatgtttcagagctggtacatctaatgtcttaatgtttccttacattatcattgccatggttttggtagttgaaagatgctttaatatttgtcatgttgcgttaaataagatctacactttggcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="61314" stop="63214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61614" g_stop="61684" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61685" i_stop="62633" i_length="949">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.424" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62634" g_stop="62913" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="351" r_length="280" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="352" polyA_stop="369"/>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E218352" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E218352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61614" e_stop="61684"/>
          <exon e_start="62634" e_stop="62913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAAAGGAGGATCAGGGAGCATGCAGAGAGGGAGCTACAACAGGCAGCTGCTGCTTGATTCTTTTATGAGGTTGGTTCTTAAACTTTTGTTACATTTACATTGTAGTGTTTGATACTTGATAGTAACCATGAATCATCATCTTAATAAAACATTCATCTAAAAATTCGTTGCATGCTGTAAACTTTAATAAAGTGAAATTGGTTTCCAAACTCTTTCTAGTTCCCTTTTTTTGTTCGGATAATGGGTCTTTTTTTATCCTCTTGTTGTTTGGATTATCAAAGATCATAGTAACATGTACAAAATACTCCAAGCCCAAGGTACACCTCTCAGGAACTTTATCTCCTGCCCTTTTGTAATACTGCTGACCTCTCGCTAGGTCAATGCAACTTCAATTATTTCTGTCATGACAAAGAATTACCAAAATTTCCTTCCAACCGGACTCTTCTTTTGACCAATATAGGAGAAACCAAAAAAAAAAAAAAAAAAGAAAGGAGCAGGAACAGTCATAAAACTGGCGACTTTAGTGGATGTTGCATGACAACCCTGTGCATGGGAATGTGTTCTTTGATCACTGAAATTGAGGGACACGGCTCTCCAAAAATTAAGAAATTAATGAAAAAAAGCTTGAAAGGTGTGCCTGTAGTTATAATCTAATTGAATATAGCAAAATGATCTAAACAGCTCTGTGATCTTCAACATTTTGCATATTCCATCTTCATGTATGAAGTTAAATATACTTGTCAATAGTCATCCTATTGAATTGCTACACAGAGTCTCTGTAACCAGCCCTGCCTTTGACAAATTTAAGCACTGATGTCTAATCTTGAAGCATACCGACTTCACCACTCTGATCATTGTTGGTACAATGCTATAATAGATTGATTCCTCCCCACCACCCCTGCCTTCCCTATTGGTCATGTCCCTCAAATATTGATTTTCATACTTGCTGAATAATTAAATTACTTGTATGTATCACGGCATGGCTATTTCATAATCGTTTCATGTCTCTGCCTTTCAGTTTGCTGTTTGATACCATGGGAATAAATTTTGAGAAGTACCAGAAGTATGAATGTGGGAGGGGAAAGCAGGACGCAGAGCTTCCCTATATCCAGCCACTTTTTATTATCAAACTTGTGTAGAACTATTGTTACATTGTTGGCCCAATGGGTAATTTATGTTTCAGAGCTGGTACATCTAATGTCTTAATGTTTCCTTACATTATCATTGCCATGGTTTTGGTAGTTGAAAGATGCTTTAATATTTGTCATGTTGCGTTAAATAAGATCTACACTTTGGCA</genome_strand>
        <mrna_strand>TAGAAAGGAGGATCAGGGAGCATGCAGAGAGGGAGCTACAACAGGCAGCTGCTGCTTGATTCTTTTATGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCTGTTTGATACCATGGGAATAAATTTTGAGAAGTACCAGAAGTATGAATGTGGGAGGGGAAAGCAGGACGCAGAGCTTCCCTATATCCAGCCACTTTTTATTATCAAACTTGTGTAGAACTATTGTTACATTGTTGGCCCAATGGGTAATTTATGTTTCAGAGCTGGTACATCTAATGTCTTAATGTTTCCTTACATTATCATTGCCATGGTTTTGGTAGTTGAAAGATGCTTTAATATTTGTCATGTTGCGTTAAATAAGATCTACACTTTGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E277213" ref_strand="-" ref_description="SGN-E277213 [cLEL-3-A5]">
      <seq>ggcgctgctaatttacattttatgtaaatagaagtttcaattcaaaaatacgcatctattaccatgtcatctttttaattttccctagaaacaaaaaagactgatgcacattgcacatgttcctttagattacatactggttttagattagttatgttcatgacaaaacaagtatgtaaacatataaattcaccaaaaatctaatatatgacattgtctttatgacattgctttttaatcaacactaggggcccgtttggaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="64431" stop="63566"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64131" g_stop="63867" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="267" polyA_stop="283"/>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E277213" ref_strand="-">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>265</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277213" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="64131" e_stop="63867"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGCTGCTAATTTACATTTTATGTAAATAGAAGTTTCAATTCAAAAATACGCATCTATTACCATGTCATCTTTTTAATTTTCCCTAGAAACAAAAAAGACTGATGCACATTGCACATGTTCCTTTAGATTACATACTGGTTTTAGATTAGTTATGTTCATGACAAAACAAGTATGTAAACATATAAATTCACCAAAAATCTAATATATGACATTGTCTTTATGACATT-CTTTTTAATCAACACTAGGGGCCCGTTTGGACATAA</genome_strand>
        <mrna_strand>GGCGCTGCTAATTTACATTTTATGTAAATAGAAGTTTCAATTCAAAAATACGCATCTATTACCATGTCATCTTTTTAATTTTCCCTAGAAACAAAAAAGACTGATGCACATTGCACATGTTCCTTTAGATTACATACTGGTTTTAGATTAGTTATGTTCATGACAAAACAAGTATGTAAACATATAAATTCACCAAAAATCTAATATATGACATTGTCTTTATGACATTGCTTTTTAATCAACACTAGGGGCCCGTTTGGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E379237" ref_strand="+" ref_description="SGN-E379237 [TUS-1-G22]">
      <seq>tcaaagccttgagctctcatctaacaacgcttttgtgcacccgatgatggtctctgaattgtctgtgcatgcatctaacaattgctttcttggtgtggagttggaatctaaattgtgcatcacctctcccatacaaatgaaagggaatcggcttccaccaaacttctctccttgcagaatttcagtagctggaataagttccacatgataattcctgtctcatggtcattgtgcatcaactggagagattctgtatgtcagttaagtggcgctgctaatttacattttatgtaaatagaagtttcaattcaaaaatacgcatctattaccatgtcatctttttaattttccctagaaacaaaaaagactgatgcacattgcacatgttcctttagattacatactggttttagattagttatgttcatgacaaaacaagtatgtaaacatataaattcaccaaaaatctaatatatgacattgtctttatgacattctttttaatcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="64698" stop="63589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64398" g_stop="63882" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E379237" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64398" e_stop="63882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAGCCTTGAGCTCTCATCTAACAACGCTTTTGTGCACCCGATGATGGTCTCTGAATTGTCTGTGCATGCATCTAACAATTGCTTTCTTGGTGTGGAGTTGGAATCTAAATTGTGCATCACCTCTCCCATACAAATGAAAGGGAATCGGCTTCCACCAAACTTCTCTCCTTGCAGAATTTCAGTAGCTGGAATAAGTTCCACATGATAATTCCTGTCTCATGGTCATTGTGCATCAACTGGAGAGATTCTGTATGTCAGTTAAGTGGCGCTGCTAATTTACATTTTATGTAAATAGAAGTTTCAATTCAAAAATACGCATCTATTACCATGTCATCTTTTTAATTTTCCCTAGAAACAAAAAAGACTGATGCACATTGCACATGTTCCTTTAGATTACATACTGGTTTTAGATTAGTTATGTTCATGACAAAACAAGTATGTAAACATATAAATTCACCAAAAATCTAATATATGACATTGTCTTTATGACATTCTTTTTAATCAACACTAGGGG</genome_strand>
        <mrna_strand>TCAAAGCCTTGAGCTCTCATCTAACAACGCTTTTGTGCACCCGATGATGGTCTCTGAATTGTCTGTGCATGCATCTAACAATTGCTTTCTTGGTGTGGAGTTGGAATCTAAATTGTGCATCACCTCTCCCATACAAATGAAAGGGAATCGGCTTCCACCAAACTTCTCTCCTTGCAGAATTTCAGTAGCTGGAATAAGTTCCACATGATAATTCCTGTCTCATGGTCATTGTGCATCAACTGGAGAGATTCTGTATGTCAGTTAAGTGGCGCTGCTAATTTACATTTTATGTAAATAGAAGTTTCAATTCAAAAATACGCATCTATTACCATGTCATCTTTTTAATTTTCCCTAGAAACAAAAAAGACTGATGCACATTGCACATGTTCCTTTAGATTACATACTGGTTTTAGATTAGTTATGTTCATGACAAAACAAGTATGTAAACATATAAATTCACCAAAAATCTAATATATGACATTGTCTTTATGACATTCTTTTTAATCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E379110" ref_strand="+" ref_description="SGN-E379110 [TUS-1-G22](-)">
      <seq>ttcaaagccttgagctctcatctaacaacgcttttgtgcacccgatgatggtctctgaattgtctgtgcatgcatctaacaattgctttcttggtgtggagttggaatctaaattgtgcatcacctctcccatacaaatgaaagggaatcggcttccaccaaacttctctccttgcagaatttcagtagctggaataagttccacatgataattcctgtctcatggtcattgtgcatcaactggagagattctgtatgtcagttaagtggcgctgctaatttacattttatgtaaatagaagtttcaattcaaaaatacgcatctattaccatgtcatctttttaattttccctagaaacaaaaaagactgatgcacattgcacatgttcctttagattacatactggttttagattagttacgttcatgacgaaacaagtatgtaaacatatccgttcaccggaaatctaatatatgacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="64699" stop="63618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64399" g_stop="63918" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="482" r_length="482" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E379110" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64399" e_stop="63918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAAGCCTTGAGCTCTCATCTAACAACGCTTTTGTGCACCCGATGATGGTCTCTGAATTGTCTGTGCATGCATCTAACAATTGCTTTCTTGGTGTGGAGTTGGAATCTAAATTGTGCATCACCTCTCCCATACAAATGAAAGGGAATCGGCTTCCACCAAACTTCTCTCCTTGCAGAATTTCAGTAGCTGGAATAAGTTCCACATGATAATTCCTGTCTCATGGTCATTGTGCATCAACTGGAGAGATTCTGTATGTCAGTTAAGTGGCGCTGCTAATTTACATTTTATGTAAATAGAAGTTTCAATTCAAAAATACGCATCTATTACCATGTCATCTTTTTAATTTTCCCTAGAAACAAAAAAGACTGATGCACATTGCACATGTTCCTTTAGATTACATACTGGTTTTAGATTAGTTATGTTCATGACAAAACAAGTATGTAAACATATAAATTCACCAAAAATCTAATATATGACAT</genome_strand>
        <mrna_strand>TTCAAAGCCTTGAGCTCTCATCTAACAACGCTTTTGTGCACCCGATGATGGTCTCTGAATTGTCTGTGCATGCATCTAACAATTGCTTTCTTGGTGTGGAGTTGGAATCTAAATTGTGCATCACCTCTCCCATACAAATGAAAGGGAATCGGCTTCCACCAAACTTCTCTCCTTGCAGAATTTCAGTAGCTGGAATAAGTTCCACATGATAATTCCTGTCTCATGGTCATTGTGCATCAACTGGAGAGATTCTGTATGTCAGTTAAGTGGCGCTGCTAATTTACATTTTATGTAAATAGAAGTTTCAATTCAAAAATACGCATCTATTACCATGTCATCTTTTTAATTTTCCCTAGAAACAAAAAAGACTGATGCACATTGCACATGTTCCTTTAGATTACATACTGGTTTTAGATTAGTTACGTTCATGACGAAACAAGTATGTAAACATATCCGTTCACCGGAAATCTAATATATGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E389997" ref_strand="+" ref_description="SGN-E389997 [TUS-4-D6](-)">
      <seq>taacaacgcttttgtgcacccgatgatggtctctgaattgtctgtgcatgcatctaacaattgctttcttggtgtggagttggaatctaaattgtgcatcacctctcccatacaaatgaaagggaatcggcttccaccaaacttctctccttgcagaatttcagtagctggaataagttccacatgataattcctgtctcatggtcattgtgcatcaactggagagattctgtatgtcagttaagtggcgctgctaatttacattttatgtaaatagaagtttcaattcaaaaatacgcatctattaccatgtcatctttttaattttctttagaaacaaaaaaggctaatgcacattgcacatgttcctttagattacatactggttttagattagttatgttcgagacaaaacaagtatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="64677" stop="63655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64377" g_stop="63955" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="423" r_length="423" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E389997" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64377" e_stop="63955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACAACGCTTTTGTGCACCCGATGATGGTCTCTGAATTGTCTGTGCATGCATCTAACAATTGCTTTCTTGGTGTGGAGTTGGAATCTAAATTGTGCATCACCTCTCCCATACAAATGAAAGGGAATCGGCTTCCACCAAACTTCTCTCCTTGCAGAATTTCAGTAGCTGGAATAAGTTCCACATGATAATTCCTGTCTCATGGTCATTGTGCATCAACTGGAGAGATTCTGTATGTCAGTTAAGTGGCGCTGCTAATTTACATTTTATGTAAATAGAAGTTTCAATTCAAAAATACGCATCTATTACCATGTCATCTTTTTAATTTTCCCTAGAAACAAAAAAGACTGATGCACATTGCACATGTTCCTTTAGATTACATACTGGTTTTAGATTAGTTATGTTCATGACAAAACAAGTATGT</genome_strand>
        <mrna_strand>TAACAACGCTTTTGTGCACCCGATGATGGTCTCTGAATTGTCTGTGCATGCATCTAACAATTGCTTTCTTGGTGTGGAGTTGGAATCTAAATTGTGCATCACCTCTCCCATACAAATGAAAGGGAATCGGCTTCCACCAAACTTCTCTCCTTGCAGAATTTCAGTAGCTGGAATAAGTTCCACATGATAATTCCTGTCTCATGGTCATTGTGCATCAACTGGAGAGATTCTGTATGTCAGTTAAGTGGCGCTGCTAATTTACATTTTATGTAAATAGAAGTTTCAATTCAAAAATACGCATCTATTACCATGTCATCTTTTTAATTTTCTTTAGAAACAAAAAAGGCTAATGCACATTGCACATGTTCCTTTAGATTACATACTGGTTTTAGATTAGTTATGTTCGAGACAAAACAAGTATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E550416" ref_strand="+" ref_description="SGN-E550416 [TUS-5-D6](-)">
      <seq>aacagcagagagcaaaaggaactaatgtcaatatctcctgaacttatatcagcaatcagacttgaatgtggcttgcagtccaacaatgatatggaagttgcttcataggcaacaaccttggtaaaagggaagttaccagttggtttttttaggttcaaagccttgagctctcatctaacaacgcttttgtgcacccgatgatggtctctgaattgtctgtgcatgcatctaacaattgctttcttggtgtggagttggaatctaaattgtgcatcacctctcccatacaaatgaaagggaatcggcttccaccaaacttctctccttgcagaatttcagtagctggaataagttccacatgataattcctgtctcatggtcattgtgcatcaactggagagattctgtatgtcagttaagtggcgctgctaatttacattttatgtaaatagaagtttcaattcaaaaatacgcatctattaccatgtcatctttttaattttccctagaaacaaaaaagacggatgcacattgcacatgttcctttagattacatactggttttaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="64852" stop="63685"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64552" g_stop="63985" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="568" r_length="568" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E550416" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64552" e_stop="63985"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGCAGAGAGCAAAAGGAACTAATGTCAATATCTCCTGAACTTATATCAGCAATCAGACTTGAATGTGGCTTGCAGTCCAACAATGATATGGAAGTTGCTTCATAGGCAACAACCTTGGTAAAAGGGAAGTTACCAGTTGGTTTTTTTAGGTTCAAAGCCTTGAGCTCTCATCTAACAACGCTTTTGTGCACCCGATGATGGTCTCTGAATTGTCTGTGCATGCATCTAACAATTGCTTTCTTGGTGTGGAGTTGGAATCTAAATTGTGCATCACCTCTCCCATACAAATGAAAGGGAATCGGCTTCCACCAAACTTCTCTCCTTGCAGAATTTCAGTAGCTGGAATAAGTTCCACATGATAATTCCTGTCTCATGGTCATTGTGCATCAACTGGAGAGATTCTGTATGTCAGTTAAGTGGCGCTGCTAATTTACATTTTATGTAAATAGAAGTTTCAATTCAAAAATACGCATCTATTACCATGTCATCTTTTTAATTTTCCCTAGAAACAAAAAAGACTGATGCACATTGCACATGTTCCTTTAGATTACATACTGGTTTTAGA</genome_strand>
        <mrna_strand>AACAGCAGAGAGCAAAAGGAACTAATGTCAATATCTCCTGAACTTATATCAGCAATCAGACTTGAATGTGGCTTGCAGTCCAACAATGATATGGAAGTTGCTTCATAGGCAACAACCTTGGTAAAAGGGAAGTTACCAGTTGGTTTTTTTAGGTTCAAAGCCTTGAGCTCTCATCTAACAACGCTTTTGTGCACCCGATGATGGTCTCTGAATTGTCTGTGCATGCATCTAACAATTGCTTTCTTGGTGTGGAGTTGGAATCTAAATTGTGCATCACCTCTCCCATACAAATGAAAGGGAATCGGCTTCCACCAAACTTCTCTCCTTGCAGAATTTCAGTAGCTGGAATAAGTTCCACATGATAATTCCTGTCTCATGGTCATTGTGCATCAACTGGAGAGATTCTGTATGTCAGTTAAGTGGCGCTGCTAATTTACATTTTATGTAAATAGAAGTTTCAATTCAAAAATACGCATCTATTACCATGTCATCTTTTTAATTTTCCCTAGAAACAAAAAAGACGGATGCACATTGCACATGTTCCTTTAGATTACATACTGGTTTTAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735817" ref_strand="+" ref_description="SGN-E735817 [LC03BA07]">
      <seq>cctaagggatgtctaccagaagagtacagctttccaacagggagaggctgcttctcagaaaacaagccctcaagatgaagaagcaaccagtgcttgctgttgggaggagcaatattgttactggagttgcaaaaaatatcaaagaacactttaagaagtatcctcttgcgattgtgaatgtcaaaggaagggcaaaagggacttcagttagggaggtggtttttaagctggagcaagctacaggtgctgttcttgtttctcaagagccaagcaaagtcatattgtatagaggttggggaccaggtggagagcgtggtgcttctaatggaaatgacaccagtaattcgaaaaacagcagagagcaaaaggaactaatgtcaatatctcctgaacttatatcagcaatcagacttgaatgtggcttgcagtccaacaatgatatggaagttgcttcataggcaacaaccttggtaaaagggaagttaccagttggtttttttaggttcaaagccttgagctctcatctaacaacgcttttgtgcacccgatgatggtctctgaattgtctgtgcatgcatctaacaattgctttcttggtgtggagttggaatctaaattgtgcatcacctctcccatacaaatgaaagggaatcggcttccaccaaacttctctccttgcagaatttcagtagctggaataagttccacatgataattcctgtctcatggtcattgtgcatcaactggagagattctgtatgtcagttaagtggcgctgctaattacattttatgtaaatagaatttcaattcaaaatacgcatctattaccatgtcatctttttaattttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="65705" stop="63748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65405" g_stop="65304" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65303" i_stop="64888" i_length="416">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64887" g_stop="64757" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="233" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64756" i_stop="64670" i_length="87">
            <donor d_prob="0.722" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64669" g_stop="64048" g_length="622"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="852" r_length="619" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E735817" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>855</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65405" e_stop="65304"/>
          <exon e_start="64887" e_stop="64757"/>
          <exon e_start="64669" e_stop="64048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAAGGGATGTCTACCAGAAGAGTACAGCTTTCCAACAGGGAGAGGCTGCTTCTCAGAAAACAAGCCCTCAAGATGAAGAAGCAACCAGTGCTTGCTGTTGGTAATGAGAACCTCTTTTATTTTCTCTATATTCCTCCTACTGTGTTGTAGTTTGTTGTATAGAGTTGCTAGTTTTGAAAACAAAGAATTAACCTTTTGCCAACTGCGGGGCATTTTCATCTTAAGCGAGATGACACTGCAAGCTTTAGCTTTCACTGAGTTGGGTATTCACTCAAATCTTCATTGTTATGAGATTTGGTTTTGGGATATTAGAATATTTCACTTGTGGTGGACCTGATGGTAAACTGGAATGCATTTAGTTGTAGTTTTCACCTTGAAAGAGCAGGATAAATTTATTTGATGCGATTGGGAATTCCGCGTTTTCTGCATATCATGCTGTTGATCTTTCTCCCCACCCTAAGCAGTCTTGGCGACTCCTGACCTTAAACCTTGTCTTCCTTTGCACCTTCATATCAGGGAGGAGCAATATTGTTACTGGAGTTGCAAAAAATATCAAAGAACACTTTAAGAAGTATCCTCTTGCGATTGTGAATGTCAAAGGAAGGGCAAAAGGGACTTCAGTTAGGGAGGTGGTTTTTAAGCTGGAGGTTTGTTTATTGGCTATTTTAGTTGCTCGTTTAATTTGGCAGCACCCCCATATTCACTGAAAGCCTATCTTTTGACACTTACTGCAGCAAGCTACAGGTGCTGTTCTTGTTTCTCAAGAGCCAAGCAAAGTCATATTGTATAGAGGTTGGGGACCAGGTGGAGAGCGTGGTGCTTCTAATGGAAATGACACCAGTAATTCGAAAAACAGCAGAGAGCAAAAGGAACTAATGTCAATATCTCCTGAACTTATATCAGCAATCAGACTTGAATGTGGCTTGCAGTCCAACAATGATATGGAAGTTGCTTCATAGGCAACAACCTTGGTAAAAGGGAAGTTACCAGTTGGTTTTTTTAGGTTCAAAGCCTTGAGCTCTCATCTAACAACGCTTTTGTGCACCCGATGATGGTCTCTGAATTGTCTGTGCATGCATCTAACAATTGCTTTCTTGGTGTGGAGTTGGAATCTAAATTGTGCATCACCTCTCCCATACAAATGAAAGGGAATCGGCTTCCACCAAACTTCTCTCCTTGCAGAATTTCAGTAGCTGGAATAAGTTCCACATGATAATTCCTGTCTCATGGTCATTGTGCATCAACTGGAGAGATTCTGTATGTCAGTTAAGTGGCGCTGCTAATTTACATTTTATGTAAATAGAAGTTTCAATTCAAAAATACGCATCTATTACCATGTCATCTTTTTAATTTTCC</genome_strand>
        <mrna_strand>CCTAAGGGATGTCTACCAGAAGAGTACAGCTTTCCAACAGGGAGAGGCTGCTTCTCAGAAAACAAGCCCTCAAGATGAAGAAGCAACCAGTGCTTGCTGTTG................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGAGCAATATTGTTACTGGAGTTGCAAAAAATATCAAAGAACACTTTAAGAAGTATCCTCTTGCGATTGTGAATGTCAAAGGAAGGGCAAAAGGGACTTCAGTTAGGGAGGTGGTTTTTAAGCTGGAG.......................................................................................CAAGCTACAGGTGCTGTTCTTGTTTCTCAAGAGCCAAGCAAAGTCATATTGTATAGAGGTTGGGGACCAGGTGGAGAGCGTGGTGCTTCTAATGGAAATGACACCAGTAATTCGAAAAACAGCAGAGAGCAAAAGGAACTAATGTCAATATCTCCTGAACTTATATCAGCAATCAGACTTGAATGTGGCTTGCAGTCCAACAATGATATGGAAGTTGCTTCATAGGCAACAACCTTGGTAAAAGGGAAGTTACCAGTTGGTTTTTTTAGGTTCAAAGCCTTGAGCTCTCATCTAACAACGCTTTTGTGCACCCGATGATGGTCTCTGAATTGTCTGTGCATGCATCTAACAATTGCTTTCTTGGTGTGGAGTTGGAATCTAAATTGTGCATCACCTCTCCCATACAAATGAAAGGGAATCGGCTTCCACCAAACTTCTCTCCTTGCAGAATTTCAGTAGCTGGAATAAGTTCCACATGATAATTCCTGTCTCATGGTCATTGTGCATCAACTGGAGAGATTCTGTATGTCAGTTAAGTGGCGCTGCTAA-TTACATTTTATGTAAATAGAA-TTTCAATTC-AAAATACGCATCTATTACCATGTCATCTTTTTAATTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E290369" ref_strand="+" ref_description="SGN-E290369 [cLES-20-G4]">
      <seq>aactaatgtcaatatctcctgaacttatatcagcaatcagacttgaatgtggcttgcagtccaacaatgatatggaagttgcttcataggcaacaaccttggtaaaagggaagttaccagttggtttttttaggttcaaagccttgagctctcatctaacaacgcttttgtgcacccgatgatggtctctgaattgtctgtgcatgcatctaacaattgctttcttggtgtggagttggaatctaaattgtgcatcacctctcccatacaaatgaaagggaatcggcttccaccaaacttctctccttgcagaatttcagtagctggaataagttccacatgataattcctgtctcatggtcattgtgcatcaactggagagattctgtatgtcagttaagtggcgctgctaatttacattttatgtaaatagaagtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="64833" stop="63794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64533" g_stop="64094" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E290369" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64533" e_stop="64094"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTAATGTCAATATCTCCTGAACTTATATCAGCAATCAGACTTGAATGTGGCTTGCAGTCCAACAATGATATGGAAGTTGCTTCATAGGCAACAACCTTGGTAAAAGGGAAGTTACCAGTTGGTTTTTTTAGGTTCAAAGCCTTGAGCTCTCATCTAACAACGCTTTTGTGCACCCGATGATGGTCTCTGAATTGTCTGTGCATGCATCTAACAATTGCTTTCTTGGTGTGGAGTTGGAATCTAAATTGTGCATCACCTCTCCCATACAAATGAAAGGGAATCGGCTTCCACCAAACTTCTCTCCTTGCAGAATTTCAGTAGCTGGAATAAGTTCCACATGATAATTCCTGTCTCATGGTCATTGTGCATCAACTGGAGAGATTCTGTATGTCAGTTAAGTGGCGCTGCTAATTTACATTTTATGTAAATAGAAGTTTC</genome_strand>
        <mrna_strand>AACTAATGTCAATATCTCCTGAACTTATATCAGCAATCAGACTTGAATGTGGCTTGCAGTCCAACAATGATATGGAAGTTGCTTCATAGGCAACAACCTTGGTAAAAGGGAAGTTACCAGTTGGTTTTTTTAGGTTCAAAGCCTTGAGCTCTCATCTAACAACGCTTTTGTGCACCCGATGATGGTCTCTGAATTGTCTGTGCATGCATCTAACAATTGCTTTCTTGGTGTGGAGTTGGAATCTAAATTGTGCATCACCTCTCCCATACAAATGAAAGGGAATCGGCTTCCACCAAACTTCTCTCCTTGCAGAATTTCAGTAGCTGGAATAAGTTCCACATGATAATTCCTGTCTCATGGTCATTGTGCATCAACTGGAGAGATTCTGTATGTCAGTTAAGTGGCGCTGCTAATTTACATTTTATGTAAATAGAAGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E389771" ref_strand="+" ref_description="SGN-E389771 [TUS-4-D6]">
      <seq>atcaaagagtcgaaaagtatgttcaatgtgaatgtggatcaagaaacattcggcagtgcagtgagtgaatctgtttctaagtcttccaggggagaagttaagatccacttttctgagaccagaagtttcaacaaacctcgggaagttaacaataaaatggaggtgtctcaacctcctcctgtaaaacctcaacaaacacttagatccacccggagtaggtccgaagggatgtctaccagaagagtacagctttccaacagggagaggctgcttctcagaaaacaagccctcaagatgaagaagcaaccagtgcttgctgttgggaggagcaatattgttactggagttgcaaaaaatatcaaagaacactttaagaagtatcctcttgcgattgtgaatgtcaaaggaagggcaaaagggacttcagttagggaggtggtttttaagctggagcaagctacaggtgctgttcttgtttctcaagagccaagcaaagtcatattgtatagaggttggggaccaggtggagagcgtggtgcttctaatggaaatgacaccagtaattcgaaaaacagcagagagcanaaggaactaatgtcaatatctcctgaacttatatcagcaatcagacttgaatgtggcttgcagtccaacattgatatgggaagtgcttcataggcaacaaccttgggtaaagggaagtaccagttggtttttttaggtcaagccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="66022" stop="64088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65722" g_stop="65633" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65632" i_stop="65536" i_length="97">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.071" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65535" g_stop="65304" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="322" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65303" i_stop="64888" i_length="416">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64887" g_stop="64757" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="453" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64756" i_stop="64670" i_length="87">
            <donor d_prob="0.722" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64669" g_stop="64388" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="732" r_length="279" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E389771" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389771" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65722" e_stop="65633"/>
          <exon e_start="65535" e_stop="65304"/>
          <exon e_start="64887" e_stop="64757"/>
          <exon e_start="64669" e_stop="64388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAAGAGTCGAAAAGTATGTTCAATGTGAATGTGGATCAAGAAACATTCGGCAGTGCAGTGAGTGAATCTGTTTCTAAGTCTTCCAGGGTAAAGTTCATTTTCTCTTCACAACTATTACACTATTTCTTTTCCATCACAAGGTTAATGGTTAAAAAAATTCGGATGTCTTTCTCATTGATTCTAGGGAGAAGTTAAGATCCACTTTTCTGAGACCAGAAGTTTCAACAAACCTCGGGAAGTTAACAATAAAATGGAGGTGTCTCAACCTCCTCCTGTAAAACCTCAACAAACACTTAGATCCACCCGGAGTAGGTCCGAAGGGATGTCTACCAGAAGAGTACAGCTTTCCAACAGGGAGAGGCTGCTTCTCAGAAAACAAGCCCTCAAGATGAAGAAGCAACCAGTGCTTGCTGTTGGTAATGAGAACCTCTTTTATTTTCTCTATATTCCTCCTACTGTGTTGTAGTTTGTTGTATAGAGTTGCTAGTTTTGAAAACAAAGAATTAACCTTTTGCCAACTGCGGGGCATTTTCATCTTAAGCGAGATGACACTGCAAGCTTTAGCTTTCACTGAGTTGGGTATTCACTCAAATCTTCATTGTTATGAGATTTGGTTTTGGGATATTAGAATATTTCACTTGTGGTGGACCTGATGGTAAACTGGAATGCATTTAGTTGTAGTTTTCACCTTGAAAGAGCAGGATAAATTTATTTGATGCGATTGGGAATTCCGCGTTTTCTGCATATCATGCTGTTGATCTTTCTCCCCACCCTAAGCAGTCTTGGCGACTCCTGACCTTAAACCTTGTCTTCCTTTGCACCTTCATATCAGGGAGGAGCAATATTGTTACTGGAGTTGCAAAAAATATCAAAGAACACTTTAAGAAGTATCCTCTTGCGATTGTGAATGTCAAAGGAAGGGCAAAAGGGACTTCAGTTAGGGAGGTGGTTTTTAAGCTGGAGGTTTGTTTATTGGCTATTTTAGTTGCTCGTTTAATTTGGCAGCACCCCCATATTCACTGAAAGCCTATCTTTTGACACTTACTGCAGCAAGCTACAGGTGCTGTTCTTGTTTCTCAAGAGCCAAGCAAAGTCATATTGTATAGAGGTTGGGGACCAGGTGGAGAGCGTGGTGCTTCTAATGGAAATGACACCAGTAATTCGAAAAACAGCAGAGAGCAAAAGGAACTAATGTCAATATCTCCTGAACTTATATCAGCAATCAGACTTGAATGTGGCTTGCAGTCCAACAATGATATGGAAGTTGCTTCATAGGCAACAACCTTGGTAAAAGGGAAGTTACCAGTTGGTTTTTTTAGGTTCAAAGCCTTG</genome_strand>
        <mrna_strand>ATCAAAGAGTCGAAAAGTATGTTCAATGTGAATGTGGATCAAGAAACATTCGGCAGTGCAGTGAGTGAATCTGTTTCTAAGTCTTCCAGG.................................................................................................GGAGAAGTTAAGATCCACTTTTCTGAGACCAGAAGTTTCAACAAACCTCGGGAAGTTAACAATAAAATGGAGGTGTCTCAACCTCCTCCTGTAAAACCTCAACAAACACTTAGATCCACCCGGAGTAGGTCCGAAGGGATGTCTACCAGAAGAGTACAGCTTTCCAACAGGGAGAGGCTGCTTCTCAGAAAACAAGCCCTCAAGATGAAGAAGCAACCAGTGCTTGCTGTTG................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGAGCAATATTGTTACTGGAGTTGCAAAAAATATCAAAGAACACTTTAAGAAGTATCCTCTTGCGATTGTGAATGTCAAAGGAAGGGCAAAAGGGACTTCAGTTAGGGAGGTGGTTTTTAAGCTGGAG.......................................................................................CAAGCTACAGGTGCTGTTCTTGTTTCTCAAGAGCCAAGCAAAGTCATATTGTATAGAGGTTGGGGACCAGGTGGAGAGCGTGGTGCTTCTAATGGAAATGACACCAGTAATTCGAAAAACAGCAGAGAGCANAAGGAACTAATGTCAATATCTCCTGAACTTATATCAGCAATCAGACTTGAATGTGGCTTGCAGTCCAACATTGATATGGGAAGTGCTTCATAGGCAACAACCTTGGGTAAAGGGAAG-TACCAGTTGGTTTTTTTAGG-TC-AAGCCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E247168" ref_strand="+" ref_description="SGN-E247168 [cLEF-46-N1]">
      <seq>atgtctaccagaatagtacagctttccaacagggagagggtgcttctcagaaaacaagccctcaagatgaagaagcaaccagtgcttgctgttgggaggagcaatattgttactggagttgcaaaaaatatcaaagaacactttaagaagtatcctcttgcgattgtgaatgtcaaaggaagggcaaaagggacttcagttagggaggtggtttttaagctggagcaagctacaggtgctgttcttgtttctcaagagccaagcaaagtcatattgtatagaggttggggaccaggtggagagcgtggtgcttctaatggaaatgacaccagtaattcgaaaaacagcagagagcaaaaggaactaatgtcaatatctcctgaacttatatcagcaatcagacttgaatgtggcttgcagtccaacaatgatatggaagttgcttcataggcaacaaccttggtaaaagggaagttaccagttggttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="65697" stop="64103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65397" g_stop="65304" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65303" i_stop="64888" i_length="416">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64887" g_stop="64757" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="225" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64756" i_stop="64670" i_length="87">
            <donor d_prob="0.722" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64669" g_stop="64403" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="492" r_length="267" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E247168" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65397" e_stop="65304"/>
          <exon e_start="64887" e_stop="64757"/>
          <exon e_start="64669" e_stop="64403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTCTACCAGAAGAGTACAGCTTTCCAACAGGGAGAGGCTGCTTCTCAGAAAACAAGCCCTCAAGATGAAGAAGCAACCAGTGCTTGCTGTTGGTAATGAGAACCTCTTTTATTTTCTCTATATTCCTCCTACTGTGTTGTAGTTTGTTGTATAGAGTTGCTAGTTTTGAAAACAAAGAATTAACCTTTTGCCAACTGCGGGGCATTTTCATCTTAAGCGAGATGACACTGCAAGCTTTAGCTTTCACTGAGTTGGGTATTCACTCAAATCTTCATTGTTATGAGATTTGGTTTTGGGATATTAGAATATTTCACTTGTGGTGGACCTGATGGTAAACTGGAATGCATTTAGTTGTAGTTTTCACCTTGAAAGAGCAGGATAAATTTATTTGATGCGATTGGGAATTCCGCGTTTTCTGCATATCATGCTGTTGATCTTTCTCCCCACCCTAAGCAGTCTTGGCGACTCCTGACCTTAAACCTTGTCTTCCTTTGCACCTTCATATCAGGGAGGAGCAATATTGTTACTGGAGTTGCAAAAAATATCAAAGAACACTTTAAGAAGTATCCTCTTGCGATTGTGAATGTCAAAGGAAGGGCAAAAGGGACTTCAGTTAGGGAGGTGGTTTTTAAGCTGGAGGTTTGTTTATTGGCTATTTTAGTTGCTCGTTTAATTTGGCAGCACCCCCATATTCACTGAAAGCCTATCTTTTGACACTTACTGCAGCAAGCTACAGGTGCTGTTCTTGTTTCTCAAGAGCCAAGCAAAGTCATATTGTATAGAGGTTGGGGACCAGGTGGAGAGCGTGGTGCTTCTAATGGAAATGACACCAGTAATTCGAAAAACAGCAGAGAGCAAAAGGAACTAATGTCAATATCTCCTGAACTTATATCAGCAATCAGACTTGAATGTGGCTTGCAGTCCAACAATGATATGGAAGTTGCTTCATAGGCAACAACCTTGGTAAAAGGGAAGTTACCAGTTGGTTTTTTT</genome_strand>
        <mrna_strand>ATGTCTACCAGAATAGTACAGCTTTCCAACAGGGAGAGGGTGCTTCTCAGAAAACAAGCCCTCAAGATGAAGAAGCAACCAGTGCTTGCTGTTG................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGAGCAATATTGTTACTGGAGTTGCAAAAAATATCAAAGAACACTTTAAGAAGTATCCTCTTGCGATTGTGAATGTCAAAGGAAGGGCAAAAGGGACTTCAGTTAGGGAGGTGGTTTTTAAGCTGGAG.......................................................................................CAAGCTACAGGTGCTGTTCTTGTTTCTCAAGAGCCAAGCAAAGTCATATTGTATAGAGGTTGGGGACCAGGTGGAGAGCGTGGTGCTTCTAATGGAAATGACACCAGTAATTCGAAAAACAGCAGAGAGCAAAAGGAACTAATGTCAATATCTCCTGAACTTATATCAGCAATCAGACTTGAATGTGGCTTGCAGTCCAACAATGATATGGAAGTTGCTTCATAGGCAACAACCTTGGTAAAAGGGAAGTTACCAGTTGGTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347148" ref_strand="+" ref_description="SGN-E347148 [cTOF-25-M13]">
      <seq>ggatgtctaccagaagagtaccgctttccaacagggagaggctgcttctcagaaaacaagccctcaagatgaagaagcaaccagtgcttgctgttgggaggagcaatattgttactggagttgcaaaaaatatcaaagaacactttaagaagtatcctcttgcgattgtgaatgtcaaaggaagggcaaaagggacttcagttagggaggtggtttttaagctggagcaagctacaggtgctgttcttgtttctcaagagccaagcaaagtcatattgtatagaggttggggaccaggtggagagcgtggtgcttctaatggaaatgacaccagtaattcgaaaaacagcagagagcaaaaggaactaatgtcaatatctcctgaacttatatcagcaatcagacttgaatgtggcttgcagtccaacaatgatatggaagtngcttcataggcaacaaccttggtaaaaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="65699" stop="64124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65399" g_stop="65304" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65303" i_stop="64888" i_length="416">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64887" g_stop="64757" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="227" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64756" i_stop="64670" i_length="87">
            <donor d_prob="0.722" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64669" g_stop="64424" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="473" r_length="246" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E347148" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65399" e_stop="65304"/>
          <exon e_start="64887" e_stop="64757"/>
          <exon e_start="64669" e_stop="64424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATGTCTACCAGAAGAGTACAGCTTTCCAACAGGGAGAGGCTGCTTCTCAGAAAACAAGCCCTCAAGATGAAGAAGCAACCAGTGCTTGCTGTTGGTAATGAGAACCTCTTTTATTTTCTCTATATTCCTCCTACTGTGTTGTAGTTTGTTGTATAGAGTTGCTAGTTTTGAAAACAAAGAATTAACCTTTTGCCAACTGCGGGGCATTTTCATCTTAAGCGAGATGACACTGCAAGCTTTAGCTTTCACTGAGTTGGGTATTCACTCAAATCTTCATTGTTATGAGATTTGGTTTTGGGATATTAGAATATTTCACTTGTGGTGGACCTGATGGTAAACTGGAATGCATTTAGTTGTAGTTTTCACCTTGAAAGAGCAGGATAAATTTATTTGATGCGATTGGGAATTCCGCGTTTTCTGCATATCATGCTGTTGATCTTTCTCCCCACCCTAAGCAGTCTTGGCGACTCCTGACCTTAAACCTTGTCTTCCTTTGCACCTTCATATCAGGGAGGAGCAATATTGTTACTGGAGTTGCAAAAAATATCAAAGAACACTTTAAGAAGTATCCTCTTGCGATTGTGAATGTCAAAGGAAGGGCAAAAGGGACTTCAGTTAGGGAGGTGGTTTTTAAGCTGGAGGTTTGTTTATTGGCTATTTTAGTTGCTCGTTTAATTTGGCAGCACCCCCATATTCACTGAAAGCCTATCTTTTGACACTTACTGCAGCAAGCTACAGGTGCTGTTCTTGTTTCTCAAGAGCCAAGCAAAGTCATATTGTATAGAGGTTGGGGACCAGGTGGAGAGCGTGGTGCTTCTAATGGAAATGACACCAGTAATTCGAAAAACAGCAGAGAGCAAAAGGAACTAATGTCAATATCTCCTGAACTTATATCAGCAATCAGACTTGAATGTGGCTTGCAGTCCAACAATGATATGGAAGTTGCTTCATAGGCAACAACCTTGGTAAAAGGG</genome_strand>
        <mrna_strand>GGATGTCTACCAGAAGAGTACCGCTTTCCAACAGGGAGAGGCTGCTTCTCAGAAAACAAGCCCTCAAGATGAAGAAGCAACCAGTGCTTGCTGTTG................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGAGCAATATTGTTACTGGAGTTGCAAAAAATATCAAAGAACACTTTAAGAAGTATCCTCTTGCGATTGTGAATGTCAAAGGAAGGGCAAAAGGGACTTCAGTTAGGGAGGTGGTTTTTAAGCTGGAG.......................................................................................CAAGCTACAGGTGCTGTTCTTGTTTCTCAAGAGCCAAGCAAAGTCATATTGTATAGAGGTTGGGGACCAGGTGGAGAGCGTGGTGCTTCTAATGGAAATGACACCAGTAATTCGAAAAACAGCAGAGAGCAAAAGGAACTAATGTCAATATCTCCTGAACTTATATCAGCAATCAGACTTGAATGTGGCTTGCAGTCCAACAATGATATGGAAGTNGCTTCATAGGCAACAACCTTGGTAAAAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E550165" ref_strand="+" ref_description="SGN-E550165 [TUS-5-D6]">
      <seq>tcgcaccagatcaaagagtcgaaaagtatgttcaatgtgaatgtggatcaagaaacattcggcagtgcagtgagtgaatctgtttctaagtcttccaggggagaagttaagatccacttttctgagaccagaagtttcaacaaacctcgggaagttaacaataaaatggaggtgtctcaacctcctcctgtaaaacctcaacaaacacttagatccacccggagtaggtccgaagggatgtctaccagaagagtacagctttccaacagggagaggctgcttctcagaaaacaagccctcaagatgaagaagcaaccagtgcttgctgttgggaggagcaatattgttactggagttgcaaaaaatatcaaagaacactttaagaagtatcctcttgcgattgtgaatgtcaaaggaagggcaaaagggacttcagttagggaggtggtttttaagctggagcaagctacaggtgctgttcttgtttctcaagagccaagcaaagtcatattgtatagaggttggggaccaggtggagagcgtggtgcttctaatggaaatgacaccagtaattcgagacnnncccgatagccaaagggaaactatgtcatatctcctgaacttatatcagcnatcagacttgaatgtggcttgcagtccaacatgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="66027" stop="64162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65730" g_stop="65633" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65632" i_stop="65536" i_length="97">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.071" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65535" g_stop="65304" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="331" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65303" i_stop="64888" i_length="416">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64887" g_stop="64757" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="462" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64756" i_stop="64670" i_length="87">
            <donor d_prob="0.722" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64669" g_stop="64462" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="669" r_length="207" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E550165" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65730" e_stop="65633"/>
          <exon e_start="65535" e_stop="65304"/>
          <exon e_start="64887" e_stop="64757"/>
          <exon e_start="64669" e_stop="64462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATCA-ATCAAAGAGTCGAAAAGTATGTTCAATGTGAATGTGGATCAAGAAACATTCGGCAGTGCAGTGAGTGAATCTGTTTCTAAGTCTTCCAGGGTAAAGTTCATTTTCTCTTCACAACTATTACACTATTTCTTTTCCATCACAAGGTTAATGGTTAAAAAAATTCGGATGTCTTTCTCATTGATTCTAGGGAGAAGTTAAGATCCACTTTTCTGAGACCAGAAGTTTCAACAAACCTCGGGAAGTTAACAATAAAATGGAGGTGTCTCAACCTCCTCCTGTAAAACCTCAACAAACACTTAGATCCACCCGGAGTAGGTCCGAAGGGATGTCTACCAGAAGAGTACAGCTTTCCAACAGGGAGAGGCTGCTTCTCAGAAAACAAGCCCTCAAGATGAAGAAGCAACCAGTGCTTGCTGTTGGTAATGAGAACCTCTTTTATTTTCTCTATATTCCTCCTACTGTGTTGTAGTTTGTTGTATAGAGTTGCTAGTTTTGAAAACAAAGAATTAACCTTTTGCCAACTGCGGGGCATTTTCATCTTAAGCGAGATGACACTGCAAGCTTTAGCTTTCACTGAGTTGGGTATTCACTCAAATCTTCATTGTTATGAGATTTGGTTTTGGGATATTAGAATATTTCACTTGTGGTGGACCTGATGGTAAACTGGAATGCATTTAGTTGTAGTTTTCACCTTGAAAGAGCAGGATAAATTTATTTGATGCGATTGGGAATTCCGCGTTTTCTGCATATCATGCTGTTGATCTTTCTCCCCACCCTAAGCAGTCTTGGCGACTCCTGACCTTAAACCTTGTCTTCCTTTGCACCTTCATATCAGGGAGGAGCAATATTGTTACTGGAGTTGCAAAAAATATCAAAGAACACTTTAAGAAGTATCCTCTTGCGATTGTGAATGTCAAAGGAAGGGCAAAAGGGACTTCAGTTAGGGAGGTGGTTTTTAAGCTGGAGGTTTGTTTATTGGCTATTTTAGTTGCTCGTTTAATTTGGCAGCACCCCCATATTCACTGAAAGCCTATCTTTTGACACTTACTGCAGCAAGCTACAGGTGCTGTTCTTGTTTCTCAAGAGCCAAGCAAAGTCATATTGTATAGAGGTTGGGGACCAGGTGGAGAGCGTGGTGCTTCTAATGGAAATGACACCAGTAATTCGAAAAACAGCAGAGAG-CAAAAGGAACTAATGTCAATATCTCCTGAACTTATATCAGCAATCAGACTTGAATGTGGCTTGCAGTCCAACAATGATA</genome_strand>
        <mrna_strand>TCGCACCAGATCAAAGAGTCGAAAAGTATGTTCAATGTGAATGTGGATCAAGAAACATTCGGCAGTGCAGTGAGTGAATCTGTTTCTAAGTCTTCCAGG.................................................................................................GGAGAAGTTAAGATCCACTTTTCTGAGACCAGAAGTTTCAACAAACCTCGGGAAGTTAACAATAAAATGGAGGTGTCTCAACCTCCTCCTGTAAAACCTCAACAAACACTTAGATCCACCCGGAGTAGGTCCGAAGGGATGTCTACCAGAAGAGTACAGCTTTCCAACAGGGAGAGGCTGCTTCTCAGAAAACAAGCCCTCAAGATGAAGAAGCAACCAGTGCTTGCTGTTG................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGAGCAATATTGTTACTGGAGTTGCAAAAAATATCAAAGAACACTTTAAGAAGTATCCTCTTGCGATTGTGAATGTCAAAGGAAGGGCAAAAGGGACTTCAGTTAGGGAGGTGGTTTTTAAGCTGGAG.......................................................................................CAAGCTACAGGTGCTGTTCTTGTTTCTCAAGAGCCAAGCAAAGTCATATTGTATAGAGGTTGGGGACCAGGTGGAGAGCGTGGTGCTTCTAATGGAAATGACACCAGTAATTCGAGACNNNCCCGATAGCCAAAGGGAAACTATGTC-ATATCTCCTGAACTTATATCAGCNATCAGACTTGAATGTGGCTTGCAGTCCAAC-ATGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E235567" ref_strand="+" ref_description="SGN-E235567 [cLED-11-H6]">
      <seq>tcaaagagtcgaaaagtatgttcaatgtgaatgtggatcaagaaacattcggcagtgcagtgagtgaatctgtttctaagtcttccaggggagaagttaagatccacttttctgagaccagaagtttcaacaaacctcgggaagttaacaataaaatggaggtgtctcaacctcctcctgtaaaacctcaacaaacacttagatccacccggagtaggtccgaagggatgtctaccagaagagtacagctttccaacagggagaggctgcttctcagaaaacaagccctcaagatgaagaagcaaccagtgcttgctgttgggaggagcaatattgttactggagttgcaaaaaatatcaaagaacactttaagaagtatcctcttgcgattgtgaatgtcaaaggaagggcaaaagggacttcagttagggaggtggtttttaagctggagcaagctacaggtgctgttcttgtttctcaagagccaagcaaagtcatattgtatagaggttggggaccaggtggagagcgtggtgcttctaatggaaatgacaccagtaattcgaaaaacagcagagagcaaaaggaactaatgtcaatatctcctgaacttatatcagcaatcagacttgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="66021" stop="64185"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65721" g_stop="65633" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65632" i_stop="65536" i_length="97">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.071" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65535" g_stop="65304" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="321" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65303" i_stop="64888" i_length="416">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64887" g_stop="64757" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="452" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64756" i_stop="64670" i_length="87">
            <donor d_prob="0.722" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64669" g_stop="64485" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="637" r_length="185" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E235567" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235567" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65721" e_stop="65633"/>
          <exon e_start="65535" e_stop="65304"/>
          <exon e_start="64887" e_stop="64757"/>
          <exon e_start="64669" e_stop="64485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAGAGTCGAAAAGTATGTTCAATGTGAATGTGGATCAAGAAACATTCGGCAGTGCAGTGAGTGAATCTGTTTCTAAGTCTTCCAGGGTAAAGTTCATTTTCTCTTCACAACTATTACACTATTTCTTTTCCATCACAAGGTTAATGGTTAAAAAAATTCGGATGTCTTTCTCATTGATTCTAGGGAGAAGTTAAGATCCACTTTTCTGAGACCAGAAGTTTCAACAAACCTCGGGAAGTTAACAATAAAATGGAGGTGTCTCAACCTCCTCCTGTAAAACCTCAACAAACACTTAGATCCACCCGGAGTAGGTCCGAAGGGATGTCTACCAGAAGAGTACAGCTTTCCAACAGGGAGAGGCTGCTTCTCAGAAAACAAGCCCTCAAGATGAAGAAGCAACCAGTGCTTGCTGTTGGTAATGAGAACCTCTTTTATTTTCTCTATATTCCTCCTACTGTGTTGTAGTTTGTTGTATAGAGTTGCTAGTTTTGAAAACAAAGAATTAACCTTTTGCCAACTGCGGGGCATTTTCATCTTAAGCGAGATGACACTGCAAGCTTTAGCTTTCACTGAGTTGGGTATTCACTCAAATCTTCATTGTTATGAGATTTGGTTTTGGGATATTAGAATATTTCACTTGTGGTGGACCTGATGGTAAACTGGAATGCATTTAGTTGTAGTTTTCACCTTGAAAGAGCAGGATAAATTTATTTGATGCGATTGGGAATTCCGCGTTTTCTGCATATCATGCTGTTGATCTTTCTCCCCACCCTAAGCAGTCTTGGCGACTCCTGACCTTAAACCTTGTCTTCCTTTGCACCTTCATATCAGGGAGGAGCAATATTGTTACTGGAGTTGCAAAAAATATCAAAGAACACTTTAAGAAGTATCCTCTTGCGATTGTGAATGTCAAAGGAAGGGCAAAAGGGACTTCAGTTAGGGAGGTGGTTTTTAAGCTGGAGGTTTGTTTATTGGCTATTTTAGTTGCTCGTTTAATTTGGCAGCACCCCCATATTCACTGAAAGCCTATCTTTTGACACTTACTGCAGCAAGCTACAGGTGCTGTTCTTGTTTCTCAAGAGCCAAGCAAAGTCATATTGTATAGAGGTTGGGGACCAGGTGGAGAGCGTGGTGCTTCTAATGGAAATGACACCAGTAATTCGAAAAACAGCAGAGAGCAAAAGGAACTAATGTCAATATCTCCTGAACTTATATCAGCAATCAGACTTGAATG</genome_strand>
        <mrna_strand>TCAAAGAGTCGAAAAGTATGTTCAATGTGAATGTGGATCAAGAAACATTCGGCAGTGCAGTGAGTGAATCTGTTTCTAAGTCTTCCAGG.................................................................................................GGAGAAGTTAAGATCCACTTTTCTGAGACCAGAAGTTTCAACAAACCTCGGGAAGTTAACAATAAAATGGAGGTGTCTCAACCTCCTCCTGTAAAACCTCAACAAACACTTAGATCCACCCGGAGTAGGTCCGAAGGGATGTCTACCAGAAGAGTACAGCTTTCCAACAGGGAGAGGCTGCTTCTCAGAAAACAAGCCCTCAAGATGAAGAAGCAACCAGTGCTTGCTGTTG................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGAGCAATATTGTTACTGGAGTTGCAAAAAATATCAAAGAACACTTTAAGAAGTATCCTCTTGCGATTGTGAATGTCAAAGGAAGGGCAAAAGGGACTTCAGTTAGGGAGGTGGTTTTTAAGCTGGAG.......................................................................................CAAGCTACAGGTGCTGTTCTTGTTTCTCAAGAGCCAAGCAAAGTCATATTGTATAGAGGTTGGGGACCAGGTGGAGAGCGTGGTGCTTCTAATGGAAATGACACCAGTAATTCGAAAAACAGCAGAGAGCAAAAGGAACTAATGTCAATATCTCCTGAACTTATATCAGCAATCAGACTTGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E243538" ref_strand="+" ref_description="SGN-E243538 [cLED-34-A13]">
      <seq>tcaaagagtcgaaaagtatgttcaatgtgaatgtggatcaagaaacattcggcagtgcagtgagtgaatctgtttctaagtcttccaggggagaagttaagatccacttttctgagaccagaagtttcaacaaacctcgggaagttaacaataaaatggaggtgtctcaacctcctcctgtaaaacctcaacaaacacttagatccacccggagtaggtccgaagggatgtctaccagaagagtacagctttccaacagggagaggctgcttctcagaaaacaagccctcaagatgaagaagcaaccagtgcttgctgttgggaggagcaatattgttactggagttgcaaaaaatatcaaagaacactttaagaagtatcctcttgcgattgtgaatgtcaaaggaagggcaaaagggacttcagttagggaggtggtttttaagctggagcaagctacaggtgctgttcttgtttctcaagagccaagcaaagtcatattgtatagaggttggggaccaggtggagagcgtggtgcttctaatggaaatgacaccagtaattcgaaaaacagcagagagcaaaaggaactaatgtcaatatctcctgaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="66021" stop="64208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65721" g_stop="65633" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65632" i_stop="65536" i_length="97">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.071" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65535" g_stop="65304" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="321" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65303" i_stop="64888" i_length="416">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64887" g_stop="64757" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="452" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64756" i_stop="64670" i_length="87">
            <donor d_prob="0.722" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64669" g_stop="64508" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="614" r_length="162" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E243538" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65721" e_stop="65633"/>
          <exon e_start="65535" e_stop="65304"/>
          <exon e_start="64887" e_stop="64757"/>
          <exon e_start="64669" e_stop="64508"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAGAGTCGAAAAGTATGTTCAATGTGAATGTGGATCAAGAAACATTCGGCAGTGCAGTGAGTGAATCTGTTTCTAAGTCTTCCAGGGTAAAGTTCATTTTCTCTTCACAACTATTACACTATTTCTTTTCCATCACAAGGTTAATGGTTAAAAAAATTCGGATGTCTTTCTCATTGATTCTAGGGAGAAGTTAAGATCCACTTTTCTGAGACCAGAAGTTTCAACAAACCTCGGGAAGTTAACAATAAAATGGAGGTGTCTCAACCTCCTCCTGTAAAACCTCAACAAACACTTAGATCCACCCGGAGTAGGTCCGAAGGGATGTCTACCAGAAGAGTACAGCTTTCCAACAGGGAGAGGCTGCTTCTCAGAAAACAAGCCCTCAAGATGAAGAAGCAACCAGTGCTTGCTGTTGGTAATGAGAACCTCTTTTATTTTCTCTATATTCCTCCTACTGTGTTGTAGTTTGTTGTATAGAGTTGCTAGTTTTGAAAACAAAGAATTAACCTTTTGCCAACTGCGGGGCATTTTCATCTTAAGCGAGATGACACTGCAAGCTTTAGCTTTCACTGAGTTGGGTATTCACTCAAATCTTCATTGTTATGAGATTTGGTTTTGGGATATTAGAATATTTCACTTGTGGTGGACCTGATGGTAAACTGGAATGCATTTAGTTGTAGTTTTCACCTTGAAAGAGCAGGATAAATTTATTTGATGCGATTGGGAATTCCGCGTTTTCTGCATATCATGCTGTTGATCTTTCTCCCCACCCTAAGCAGTCTTGGCGACTCCTGACCTTAAACCTTGTCTTCCTTTGCACCTTCATATCAGGGAGGAGCAATATTGTTACTGGAGTTGCAAAAAATATCAAAGAACACTTTAAGAAGTATCCTCTTGCGATTGTGAATGTCAAAGGAAGGGCAAAAGGGACTTCAGTTAGGGAGGTGGTTTTTAAGCTGGAGGTTTGTTTATTGGCTATTTTAGTTGCTCGTTTAATTTGGCAGCACCCCCATATTCACTGAAAGCCTATCTTTTGACACTTACTGCAGCAAGCTACAGGTGCTGTTCTTGTTTCTCAAGAGCCAAGCAAAGTCATATTGTATAGAGGTTGGGGACCAGGTGGAGAGCGTGGTGCTTCTAATGGAAATGACACCAGTAATTCGAAAAACAGCAGAGAGCAAAAGGAACTAATGTCAATATCTCCTGAACTT</genome_strand>
        <mrna_strand>TCAAAGAGTCGAAAAGTATGTTCAATGTGAATGTGGATCAAGAAACATTCGGCAGTGCAGTGAGTGAATCTGTTTCTAAGTCTTCCAGG.................................................................................................GGAGAAGTTAAGATCCACTTTTCTGAGACCAGAAGTTTCAACAAACCTCGGGAAGTTAACAATAAAATGGAGGTGTCTCAACCTCCTCCTGTAAAACCTCAACAAACACTTAGATCCACCCGGAGTAGGTCCGAAGGGATGTCTACCAGAAGAGTACAGCTTTCCAACAGGGAGAGGCTGCTTCTCAGAAAACAAGCCCTCAAGATGAAGAAGCAACCAGTGCTTGCTGTTG................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGAGCAATATTGTTACTGGAGTTGCAAAAAATATCAAAGAACACTTTAAGAAGTATCCTCTTGCGATTGTGAATGTCAAAGGAAGGGCAAAAGGGACTTCAGTTAGGGAGGTGGTTTTTAAGCTGGAG.......................................................................................CAAGCTACAGGTGCTGTTCTTGTTTCTCAAGAGCCAAGCAAAGTCATATTGTATAGAGGTTGGGGACCAGGTGGAGAGCGTGGTGCTTCTAATGGAAATGACACCAGTAATTCGAAAAACAGCAGAGAGCAAAAGGAACTAATGTCAATATCTCCTGAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E210098" ref_strand="+" ref_description="SGN-E210098 [cLEC-40-O8]">
      <seq>cactgaccccagttctcagaaagaattatcaaatgatttctcggacacagaccacgattcgcagcaagaatttccaattaatccgtttttccaatatgaaggcaaggatgaggctatgggtgatacaattcaacctcagcattaatctatttcatcaatcacagagtcgaaaagtatgttcaatgtgaatgtggatcaagaaacattccgcagtgcagtgagtgaatctgtttctaagtcttccaggggagaagttaagatgcacttttctgagaccagaagtttcaacaaacctcgggaagttaacaatgaaatggaggtgtctcaacctgcttctgcaaaacctcagcaaacacttagatccacccggagtaggtccgaagggatgtctaccagaagagtacagctttccaacagggagaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="66179" stop="65058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65879" g_stop="65633" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65632" i_stop="65536" i_length="97">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.071" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65535" g_stop="65358" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="425" r_length="178" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E210098" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65879" e_stop="65633"/>
          <exon e_start="65535" e_stop="65358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTGACCCCAGTTCTCAGAAAGAATTATCAAATGATTTCTCGGACACAGACCACGATTCGCAGCAAGAATTTCCAATTAATCCGTTTTTCCAATATGAGGGCAAGGTTGAGGCTATGGGTGATACAATTCAACCTCAGCATCAATCTATTTCATCAATCAAAGAGTCGAAAAGTATGTTCAATGTGAATGTGGATCAAGAAACATTCGGCAGTGCAGTGAGTGAATCTGTTTCTAAGTCTTCCAGGGTAAAGTTCATTTTCTCTTCACAACTATTACACTATTTCTTTTCCATCACAAGGTTAATGGTTAAAAAAATTCGGATGTCTTTCTCATTGATTCTAGGGAGAAGTTAAGATCCACTTTTCTGAGACCAGAAGTTTCAACAAACCTCGGGAAGTTAACAATAAAATGGAGGTGTCTCAACCTCCTCCTGTAAAACCTCAACAAACACTTAGATCCACCCGGAGTAGGTCCGAAGGGATGTCTACCAGAAGAGTACAGCTTTCCAACAGGGAGAGGC</genome_strand>
        <mrna_strand>CACTGACCCCAGTTCTCAGAAAGAATTATCAAATGATTTCTCGGACACAGACCACGATTCGCAGCAAGAATTTCCAATTAATCCGTTTTTCCAATATGAAGGCAAGGATGAGGCTATGGGTGATACAATTCAACCTCAGCATTAATCTATTTCATCAATCACAGAGTCGAAAAGTATGTTCAATGTGAATGTGGATCAAGAAACATTCCGCAGTGCAGTGAGTGAATCTGTTTCTAAGTCTTCCAGG.................................................................................................GGAGAAGTTAAGATGCACTTTTCTGAGACCAGAAGTTTCAACAAACCTCGGGAAGTTAACAATGAAATGGAGGTGTCTCAACCTGCTTCTGCAAAACCTCAGCAAACACTTAGATCCACCCGGAGTAGGTCCGAAGGGATGTCTACCAGAAGAGTACAGCTTTCCAACAGGGAGAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E213538" ref_strand="+" ref_description="SGN-E213538 [cLEC-71-G18]">
      <seq>cagagagtgggggaatactagttgctgttgagcgagttaataagggttatgcgatcattgtataccgaggaaagaactacgaaaggcctgcttcattgaggcctcagactcttctaagtaaaagagaagcaatgaagcgctctatagaggctcagcgacgtcagtcattgaaattacatgtcttaaagcttacacaaaatatagaggctttgcagtcacggttggccaagaatgaggagataagtcatattcagtccccggatatagttgataggcaggtacccgtgatgggcatatcagatgctgcaggtggaactaattaccagtctattgtagcaagtcctattgaggattctggagatgctgcagaagacactgaccccagttctcagaaagaattatcaaatgatttctcggacacagaccacgattcgcagcaagaatttccaattaatccgtttttccaatatgagggcaaggttgaggctatgggtgatacaattcaacctcagcatcaatctatttcatcaatcaaagagtcgaaaagtatgttcaatgtgaatgtggatcaagaaacattcggcagtgcagtgagtgaatctgtttctaagtcttccaggggagaagttaagatccacttttctgagaccagaagtttcaacaacctcgggaagtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="68625" stop="65178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68325" g_stop="68162" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68161" i_stop="66925" i_length="1237">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66924" g_stop="66865" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="224" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66864" i_stop="66763" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66762" g_stop="66637" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="350" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66636" i_stop="65903" i_length="734">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65902" g_stop="65633" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="620" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65632" i_stop="65536" i_length="97">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.071" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65535" g_stop="65478" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="677" r_length="57" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E213538" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68325" e_stop="68162"/>
          <exon e_start="66924" e_stop="66865"/>
          <exon e_start="66762" e_stop="66637"/>
          <exon e_start="65902" e_stop="65633"/>
          <exon e_start="65535" e_stop="65478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGAGTGGGGGAATACTAGTTGCTGTTGAGCGAGTTAATAAGGGTTATGCGATCATTGTATACCGAGGAAAGAACTACGAAAGGCCTGCTTCATTGAGGCCTCAGACTCTTCTAAGTAAAAGAGAAGCAATGAAGCGCTCTATAGAGGCTCAGCGACGTCAGGTAATGTTGTAGTATTTAAGTAGTATTTAAGGTGCCAGTAAATGCATCTAGAAGTTCCCAGATATAATACCTCTTTATTTTAGTAATTGACTTTGGCTTGGTTTTAAAATTTTGAAGTAGATTTGACCCCTTTATCAACTATACTTTTCTCTCCTTCCATTCAAAATCTAACATTCTGATTCTTTTGTGTATCTCAAAAAAAAAAATAAAAAAAATCTAACGTTCTGATTTACCCACTTAAATATGATTGCAGCTATACATCTCACTTTCTACTAAAAGACTATATGAAGAGTGGCAGAATTGAAATGTAACTTATCCCAGCCAATTTCAGAGTTAGAATGTATTAAAAAACCCAACTTTACTCGAGAAAAGGAAAATCTCCAAAGAGGCCTTTCCTCATGTGGTCTGAAGAATAGCCAACTTTGTCACTCAGTATCAAAATCGTATTATTTTGTGTGATCCACTTTTGTTCGTGGAAGTACGTCGAGTCATTTAAACGTCTAGGCATAAACATGGGGGGTTTTGGTTAAAAAGGAACCATGGTAAGTTTAGCTGTGAAAGAATCCAACATCTAGCCCATCCTTTTATGGACTCCATTGGAAATTCTTGCACTACCCAAGTGCGACAACCATATAATTCAACACCGTCTTGCATGTGTAACCTGATTTGGGTGCAATGATAGACTTACAAAGGTTAGCTCTAGTATATGTGAAAGAATTTGAGCTTTCAGCCCAAAATCATATGGTCATGCTTAGACTTTGGAGTAATCCAAGACCTCGATAGACCACTTTGGAAGCCTTCAACCAATCTAGACATTTAACTACATAACTCAACATAAGGAATAGCTTATGTGTTGGTACTTTAAATTTTTTTTATAATGAGGGCATTTTCCATTTGTTATGTATCTGTTTCTAATTCTTGTTCTCACAACTAGTTAAATTTGCTGGCACTTGTTTCTAGAGATGGTTTTCCTTCTATTATTATCACTGTACTTTTACCATCAAAAAATAGAAAGGGAAATAACAAAAAAGTGTCAGTGTATTTCTGCAACACATTTGAGTTGAGGTGCTGGTGAACCATTTTGTATGACAGTCTGTAAGCTTCTCTAACCTTGTGAGGTTTCTTATTTCTATAGATTTCCATTTATCTCCTCTTCTTTTCACTCGTCTTTCTTTCTGATGCTTCTGCCAAAACTCTTCCACTGCTAATCTTTCTTTTACTTTGTTTTCTGATGCAGTCATTGAAATTACATGTCTTAAAGCTTACACAAAATATAGAGGCTTTGCAGTCACGGTTGGTGTGTTATCTTACCTTATTTGAGTTGCTTTGATTTTTGTGTTCCAGTTACTAGCTCATTTCTAAATTATATTGAAATGTTGCACGATTTGCTTTGGTTCAGGCCAAGAATGAGGAGATAAGTCATATTCAGTCCCCGGATATAGTTGATAGGCAGGTACCCGTGATGGGCATATCAGATGCTGCAGGTGGAACTAATTACCAGTCTATTGTAGCAAGTCCTATTGAGGTGAAAATTAATCCATTTATTGTACAATATTCTGTCACTGTTGAAGGAACAATTATGTTTCGTGTTGCTTCTCATATCTTTGATGCTTGTTGGATTCGAGATCCTTTATCAACCATATATAAGGTACAAGCTAGTGTGTCACCTTCAGAAGTCTTTCAGATACCCCAATAGGCACAAACAACTTGCCTTCAAGTCTTATGCATATTCTTTATGCTTTCATTAAATTTATTAGGACAGCATGTATCGTTAATACCTATGTTTAAGAGATGGATGGATCTGGAGTTTTGTGGACATATAACCACTTGCATCTTATTTTTATGTATGAAAACTTGGTTGTAGAATCCTGTGTCATTGTCTTCTTTAGTCATCATAATTAATGATAAGTCAAAATAGCTGCTGCCCACATGACCCAAATTTGTAATTTAAGGAATTTGATGTTCGTAACCTTTTCTATCTGGGATAGGTTTTTCTGCTTCCCAACTGCATGCTGAATGTCATTGTAAAAACAATCCTTCTAGAATCAAACATTGTTATATGAGTTTCTGTATCATAGAGTACTGAGCAAAATTGAAAAAAAAGGCTCTGCTGATTATGAAATATGTTCAAAATGGTTGATATCAATCAATGGTTAAATGTATGTGGTCCTCAAACTCTGTTGTATCATTTCTTGCACTTTTTATTATTTTGCAGTGTGTATTGATAGAGAGAGAAGCTTATTTAGCTTTTATATTCAGGATTCTGGAGATGCTGCAGAAGACACTGACCCCAGTTCTCAGAAAGAATTATCAAATGATTTCTCGGACACAGACCACGATTCGCAGCAAGAATTTCCAATTAATCCGTTTTTCCAATATGAGGGCAAGGTTGAGGCTATGGGTGATACAATTCAACCTCAGCATCAATCTATTTCATCAATCAAAGAGTCGAAAAGTATGTTCAATGTGAATGTGGATCAAGAAACATTCGGCAGTGCAGTGAGTGAATCTGTTTCTAAGTCTTCCAGGGTAAAGTTCATTTTCTCTTCACAACTATTACACTATTTCTTTTCCATCACAAGGTTAATGGTTAAAAAAATTCGGATGTCTTTCTCATTGATTCTAGGGAGAAGTTAAGATCCACTTTTCTGAGACCAGAAGTTTCAACAAACCTCGGGAAGTTA</genome_strand>
        <mrna_strand>CAGAGAGTGGGGGAATACTAGTTGCTGTTGAGCGAGTTAATAAGGGTTATGCGATCATTGTATACCGAGGAAAGAACTACGAAAGGCCTGCTTCATTGAGGCCTCAGACTCTTCTAAGTAAAAGAGAAGCAATGAAGCGCTCTATAGAGGCTCAGCGACGTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATTGAAATTACATGTCTTAAAGCTTACACAAAATATAGAGGCTTTGCAGTCACGGTTG......................................................................................................GCCAAGAATGAGGAGATAAGTCATATTCAGTCCCCGGATATAGTTGATAGGCAGGTACCCGTGATGGGCATATCAGATGCTGCAGGTGGAACTAATTACCAGTCTATTGTAGCAAGTCCTATTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCTGGAGATGCTGCAGAAGACACTGACCCCAGTTCTCAGAAAGAATTATCAAATGATTTCTCGGACACAGACCACGATTCGCAGCAAGAATTTCCAATTAATCCGTTTTTCCAATATGAGGGCAAGGTTGAGGCTATGGGTGATACAATTCAACCTCAGCATCAATCTATTTCATCAATCAAAGAGTCGAAAAGTATGTTCAATGTGAATGTGGATCAAGAAACATTCGGCAGTGCAGTGAGTGAATCTGTTTCTAAGTCTTCCAGG.................................................................................................GGAGAAGTTAAGATCCACTTTTCTGAGACCAGAAGTTTCAAC-AACCTCGGGAAGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E332100" ref_strand="+" ref_description="SGN-E332100 [cTOD-16-G8]">
      <seq>attggtgaaggtaataacggggaggaaaaacattgaagaggtccaccaaatagctaggatgttagaggcagagagtgggggaatactagttgctgttgagcgagttaataagggttatgcgatcattgtataccgaggaaagaactacgaaaggcctgcttcattgaggcctcagactcttctaagtaaaagagaagcaatgaagcgctctatagaggctcagcgacgtcagtcattgaaattacatgtcttaaagcttacacaaaatatagaggctttgcagtcacggttggccaagaatgaggagataagtcatattcagtccccggatatagttgataggcaggtacccgtgatgggcatatcagatgctgcaggtggaactaattaccagtctattgtagcaagtcctattgaggattctggagatgctgcagaagacactgaccccagttctcagaaagaattatcaaatgatttctcggacacagaccacgattcgcagcaagaatttccaattaatccgtttttccaatatgagggcaaggttgaggctatgggtgatacaattcaacctcagcatcaatctatttcatcaatcaaagagtcgaaaagtatgttcaatgtgaatgtggatcaagaaacattcggcagtgcagtgagtggatctgtttctaagtcttccaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="68693" stop="65332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68393" g_stop="68162" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68161" i_stop="66925" i_length="1237">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66924" g_stop="66865" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="292" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66864" i_stop="66763" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66762" g_stop="66637" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="418" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66636" i_stop="65903" i_length="734">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65902" g_stop="65633" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="688" r_length="270" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E332100" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68393" e_stop="68162"/>
          <exon e_start="66924" e_stop="66865"/>
          <exon e_start="66762" e_stop="66637"/>
          <exon e_start="65902" e_stop="65633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGTGAAGGTAATAACGGGGAGGAAAAACATTGAAGAGGTCCACCAAATAGCTAGGATGTTAGAGGCAGAGAGTGGGGGAATACTAGTTGCTGTTGAGCGAGTTAATAAGGGTTATGCGATCATTGTATACCGAGGAAAGAACTACGAAAGGCCTGCTTCATTGAGGCCTCAGACTCTTCTAAGTAAAAGAGAAGCAATGAAGCGCTCTATAGAGGCTCAGCGACGTCAGGTAATGTTGTAGTATTTAAGTAGTATTTAAGGTGCCAGTAAATGCATCTAGAAGTTCCCAGATATAATACCTCTTTATTTTAGTAATTGACTTTGGCTTGGTTTTAAAATTTTGAAGTAGATTTGACCCCTTTATCAACTATACTTTTCTCTCCTTCCATTCAAAATCTAACATTCTGATTCTTTTGTGTATCTCAAAAAAAAAAATAAAAAAAATCTAACGTTCTGATTTACCCACTTAAATATGATTGCAGCTATACATCTCACTTTCTACTAAAAGACTATATGAAGAGTGGCAGAATTGAAATGTAACTTATCCCAGCCAATTTCAGAGTTAGAATGTATTAAAAAACCCAACTTTACTCGAGAAAAGGAAAATCTCCAAAGAGGCCTTTCCTCATGTGGTCTGAAGAATAGCCAACTTTGTCACTCAGTATCAAAATCGTATTATTTTGTGTGATCCACTTTTGTTCGTGGAAGTACGTCGAGTCATTTAAACGTCTAGGCATAAACATGGGGGGTTTTGGTTAAAAAGGAACCATGGTAAGTTTAGCTGTGAAAGAATCCAACATCTAGCCCATCCTTTTATGGACTCCATTGGAAATTCTTGCACTACCCAAGTGCGACAACCATATAATTCAACACCGTCTTGCATGTGTAACCTGATTTGGGTGCAATGATAGACTTACAAAGGTTAGCTCTAGTATATGTGAAAGAATTTGAGCTTTCAGCCCAAAATCATATGGTCATGCTTAGACTTTGGAGTAATCCAAGACCTCGATAGACCACTTTGGAAGCCTTCAACCAATCTAGACATTTAACTACATAACTCAACATAAGGAATAGCTTATGTGTTGGTACTTTAAATTTTTTTTATAATGAGGGCATTTTCCATTTGTTATGTATCTGTTTCTAATTCTTGTTCTCACAACTAGTTAAATTTGCTGGCACTTGTTTCTAGAGATGGTTTTCCTTCTATTATTATCACTGTACTTTTACCATCAAAAAATAGAAAGGGAAATAACAAAAAAGTGTCAGTGTATTTCTGCAACACATTTGAGTTGAGGTGCTGGTGAACCATTTTGTATGACAGTCTGTAAGCTTCTCTAACCTTGTGAGGTTTCTTATTTCTATAGATTTCCATTTATCTCCTCTTCTTTTCACTCGTCTTTCTTTCTGATGCTTCTGCCAAAACTCTTCCACTGCTAATCTTTCTTTTACTTTGTTTTCTGATGCAGTCATTGAAATTACATGTCTTAAAGCTTACACAAAATATAGAGGCTTTGCAGTCACGGTTGGTGTGTTATCTTACCTTATTTGAGTTGCTTTGATTTTTGTGTTCCAGTTACTAGCTCATTTCTAAATTATATTGAAATGTTGCACGATTTGCTTTGGTTCAGGCCAAGAATGAGGAGATAAGTCATATTCAGTCCCCGGATATAGTTGATAGGCAGGTACCCGTGATGGGCATATCAGATGCTGCAGGTGGAACTAATTACCAGTCTATTGTAGCAAGTCCTATTGAGGTGAAAATTAATCCATTTATTGTACAATATTCTGTCACTGTTGAAGGAACAATTATGTTTCGTGTTGCTTCTCATATCTTTGATGCTTGTTGGATTCGAGATCCTTTATCAACCATATATAAGGTACAAGCTAGTGTGTCACCTTCAGAAGTCTTTCAGATACCCCAATAGGCACAAACAACTTGCCTTCAAGTCTTATGCATATTCTTTATGCTTTCATTAAATTTATTAGGACAGCATGTATCGTTAATACCTATGTTTAAGAGATGGATGGATCTGGAGTTTTGTGGACATATAACCACTTGCATCTTATTTTTATGTATGAAAACTTGGTTGTAGAATCCTGTGTCATTGTCTTCTTTAGTCATCATAATTAATGATAAGTCAAAATAGCTGCTGCCCACATGACCCAAATTTGTAATTTAAGGAATTTGATGTTCGTAACCTTTTCTATCTGGGATAGGTTTTTCTGCTTCCCAACTGCATGCTGAATGTCATTGTAAAAACAATCCTTCTAGAATCAAACATTGTTATATGAGTTTCTGTATCATAGAGTACTGAGCAAAATTGAAAAAAAAGGCTCTGCTGATTATGAAATATGTTCAAAATGGTTGATATCAATCAATGGTTAAATGTATGTGGTCCTCAAACTCTGTTGTATCATTTCTTGCACTTTTTATTATTTTGCAGTGTGTATTGATAGAGAGAGAAGCTTATTTAGCTTTTATATTCAGGATTCTGGAGATGCTGCAGAAGACACTGACCCCAGTTCTCAGAAAGAATTATCAAATGATTTCTCGGACACAGACCACGATTCGCAGCAAGAATTTCCAATTAATCCGTTTTTCCAATATGAGGGCAAGGTTGAGGCTATGGGTGATACAATTCAACCTCAGCATCAATCTATTTCATCAATCAAAGAGTCGAAAAGTATGTTCAATGTGAATGTGGATCAAGAAACATTCGGCAGTGCAGTGAGTGAATCTGTTTCTAAGTCTTCCAGG</genome_strand>
        <mrna_strand>ATTGGTGAAGGTAATAACGGGGAGGAAAAACATTGAAGAGGTCCACCAAATAGCTAGGATGTTAGAGGCAGAGAGTGGGGGAATACTAGTTGCTGTTGAGCGAGTTAATAAGGGTTATGCGATCATTGTATACCGAGGAAAGAACTACGAAAGGCCTGCTTCATTGAGGCCTCAGACTCTTCTAAGTAAAAGAGAAGCAATGAAGCGCTCTATAGAGGCTCAGCGACGTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATTGAAATTACATGTCTTAAAGCTTACACAAAATATAGAGGCTTTGCAGTCACGGTTG......................................................................................................GCCAAGAATGAGGAGATAAGTCATATTCAGTCCCCGGATATAGTTGATAGGCAGGTACCCGTGATGGGCATATCAGATGCTGCAGGTGGAACTAATTACCAGTCTATTGTAGCAAGTCCTATTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCTGGAGATGCTGCAGAAGACACTGACCCCAGTTCTCAGAAAGAATTATCAAATGATTTCTCGGACACAGACCACGATTCGCAGCAAGAATTTCCAATTAATCCGTTTTTCCAATATGAGGGCAAGGTTGAGGCTATGGGTGATACAATTCAACCTCAGCATCAATCTATTTCATCAATCAAAGAGTCGAAAAGTATGTTCAATGTGAATGTGGATCAAGAAACATTCGGCAGTGCAGTGAGTGGATCTGTTTCTAAGTCTTCCAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E265887" ref_strand="+" ref_description="SGN-E265887 [cLEI-11-B16]">
      <seq>tacgaaaggcctgcttcattgaggcctcagactcttgtaagtgaaagagaagcagtggagcgctctatagaggctcagcgacgtcagtcattgaaattacatgtcttaaagcttacacaaaatatagaggctttgcagtcacggttggccaagaatgaggagataagtcatattcagtccccggatatagttgataggcaggtacccgtgatgggcatatcagatgctgcaggtggaactaattaccagtctattgtagcaagtcctattgaggattctggagatgctgcagaagacactgaccccagttctcagaaagaattatcaaatgatttctcggacacagaccacgattcgcagcaagaatttccaattaatccgtttttccaatatgagggcaaggttgaggctatgggtgatacaattcaacctcagcatcaatctatttcatcaatcaaagagtcgaaaagtatgttcaatgtgaatgtggatcaagaaacattcggcagtgcagtgagtgaatctgtttctaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="68548" stop="65341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68248" g_stop="68162" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68161" i_stop="66925" i_length="1237">
            <donor d_prob="0.985" d_score="0.94"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66924" g_stop="66865" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="147" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66864" i_stop="66763" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66762" g_stop="66637" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="273" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66636" i_stop="65903" i_length="734">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65902" g_stop="65641" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="535" r_length="262" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E265887" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68248" e_stop="68162"/>
          <exon e_start="66924" e_stop="66865"/>
          <exon e_start="66762" e_stop="66637"/>
          <exon e_start="65902" e_stop="65641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGAAAGGCCTGCTTCATTGAGGCCTCAGACTCTTCTAAGTAAAAGAGAAGCAATGAAGCGCTCTATAGAGGCTCAGCGACGTCAGGTAATGTTGTAGTATTTAAGTAGTATTTAAGGTGCCAGTAAATGCATCTAGAAGTTCCCAGATATAATACCTCTTTATTTTAGTAATTGACTTTGGCTTGGTTTTAAAATTTTGAAGTAGATTTGACCCCTTTATCAACTATACTTTTCTCTCCTTCCATTCAAAATCTAACATTCTGATTCTTTTGTGTATCTCAAAAAAAAAAATAAAAAAAATCTAACGTTCTGATTTACCCACTTAAATATGATTGCAGCTATACATCTCACTTTCTACTAAAAGACTATATGAAGAGTGGCAGAATTGAAATGTAACTTATCCCAGCCAATTTCAGAGTTAGAATGTATTAAAAAACCCAACTTTACTCGAGAAAAGGAAAATCTCCAAAGAGGCCTTTCCTCATGTGGTCTGAAGAATAGCCAACTTTGTCACTCAGTATCAAAATCGTATTATTTTGTGTGATCCACTTTTGTTCGTGGAAGTACGTCGAGTCATTTAAACGTCTAGGCATAAACATGGGGGGTTTTGGTTAAAAAGGAACCATGGTAAGTTTAGCTGTGAAAGAATCCAACATCTAGCCCATCCTTTTATGGACTCCATTGGAAATTCTTGCACTACCCAAGTGCGACAACCATATAATTCAACACCGTCTTGCATGTGTAACCTGATTTGGGTGCAATGATAGACTTACAAAGGTTAGCTCTAGTATATGTGAAAGAATTTGAGCTTTCAGCCCAAAATCATATGGTCATGCTTAGACTTTGGAGTAATCCAAGACCTCGATAGACCACTTTGGAAGCCTTCAACCAATCTAGACATTTAACTACATAACTCAACATAAGGAATAGCTTATGTGTTGGTACTTTAAATTTTTTTTATAATGAGGGCATTTTCCATTTGTTATGTATCTGTTTCTAATTCTTGTTCTCACAACTAGTTAAATTTGCTGGCACTTGTTTCTAGAGATGGTTTTCCTTCTATTATTATCACTGTACTTTTACCATCAAAAAATAGAAAGGGAAATAACAAAAAAGTGTCAGTGTATTTCTGCAACACATTTGAGTTGAGGTGCTGGTGAACCATTTTGTATGACAGTCTGTAAGCTTCTCTAACCTTGTGAGGTTTCTTATTTCTATAGATTTCCATTTATCTCCTCTTCTTTTCACTCGTCTTTCTTTCTGATGCTTCTGCCAAAACTCTTCCACTGCTAATCTTTCTTTTACTTTGTTTTCTGATGCAGTCATTGAAATTACATGTCTTAAAGCTTACACAAAATATAGAGGCTTTGCAGTCACGGTTGGTGTGTTATCTTACCTTATTTGAGTTGCTTTGATTTTTGTGTTCCAGTTACTAGCTCATTTCTAAATTATATTGAAATGTTGCACGATTTGCTTTGGTTCAGGCCAAGAATGAGGAGATAAGTCATATTCAGTCCCCGGATATAGTTGATAGGCAGGTACCCGTGATGGGCATATCAGATGCTGCAGGTGGAACTAATTACCAGTCTATTGTAGCAAGTCCTATTGAGGTGAAAATTAATCCATTTATTGTACAATATTCTGTCACTGTTGAAGGAACAATTATGTTTCGTGTTGCTTCTCATATCTTTGATGCTTGTTGGATTCGAGATCCTTTATCAACCATATATAAGGTACAAGCTAGTGTGTCACCTTCAGAAGTCTTTCAGATACCCCAATAGGCACAAACAACTTGCCTTCAAGTCTTATGCATATTCTTTATGCTTTCATTAAATTTATTAGGACAGCATGTATCGTTAATACCTATGTTTAAGAGATGGATGGATCTGGAGTTTTGTGGACATATAACCACTTGCATCTTATTTTTATGTATGAAAACTTGGTTGTAGAATCCTGTGTCATTGTCTTCTTTAGTCATCATAATTAATGATAAGTCAAAATAGCTGCTGCCCACATGACCCAAATTTGTAATTTAAGGAATTTGATGTTCGTAACCTTTTCTATCTGGGATAGGTTTTTCTGCTTCCCAACTGCATGCTGAATGTCATTGTAAAAACAATCCTTCTAGAATCAAACATTGTTATATGAGTTTCTGTATCATAGAGTACTGAGCAAAATTGAAAAAAAAGGCTCTGCTGATTATGAAATATGTTCAAAATGGTTGATATCAATCAATGGTTAAATGTATGTGGTCCTCAAACTCTGTTGTATCATTTCTTGCACTTTTTATTATTTTGCAGTGTGTATTGATAGAGAGAGAAGCTTATTTAGCTTTTATATTCAGGATTCTGGAGATGCTGCAGAAGACACTGACCCCAGTTCTCAGAAAGAATTATCAAATGATTTCTCGGACACAGACCACGATTCGCAGCAAGAATTTCCAATTAATCCGTTTTTCCAATATGAGGGCAAGGTTGAGGCTATGGGTGATACAATTCAACCTCAGCATCAATCTATTTCATCAATCAAAGAGTCGAAAAGTATGTTCAATGTGAATGTGGATCAAGAAACATTCGGCAGTGCAGTGAGTGAATCTGTTTCTAAGT</genome_strand>
        <mrna_strand>TACGAAAGGCCTGCTTCATTGAGGCCTCAGACTCTTGTAAGTGAAAGAGAAGCAGTGGAGCGCTCTATAGAGGCTCAGCGACGTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATTGAAATTACATGTCTTAAAGCTTACACAAAATATAGAGGCTTTGCAGTCACGGTTG......................................................................................................GCCAAGAATGAGGAGATAAGTCATATTCAGTCCCCGGATATAGTTGATAGGCAGGTACCCGTGATGGGCATATCAGATGCTGCAGGTGGAACTAATTACCAGTCTATTGTAGCAAGTCCTATTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCTGGAGATGCTGCAGAAGACACTGACCCCAGTTCTCAGAAAGAATTATCAAATGATTTCTCGGACACAGACCACGATTCGCAGCAAGAATTTCCAATTAATCCGTTTTTCCAATATGAGGGCAAGGTTGAGGCTATGGGTGATACAATTCAACCTCAGCATCAATCTATTTCATCAATCAAAGAGTCGAAAAGTATGTTCAATGTGAATGTGGATCAAGAAACATTCGGCAGTGCAGTGAGTGAATCTGTTTCTAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E484162" ref_strand="+" ref_description="SGN-E484162 [cSTE-12-G18]">
      <seq>gagagaacatgcaccttcattggaagtatagggaattggtaaaggtaataaccgggaggaaaaccattgaagaggtccaccaaatagctaggatgttagaggcagagagtgggggaatactagttgctgttgagctagttaataagggtcatgcgatcattgtgtaccgaggaaagaactatgaaaggcctgcttcgttgaggcctcagactcttctaagtaaaagagaagcaatgaagcgctctatagaggctcagcgacgtcagtcgttgaaattacatgtcttaaagcttacacaaaatatagaggctttgcagtcacggttggccaaaaatgaggagatggttcatattcagtccccggatatagttgataggcaggtaccagtgacgggaatatctgatgctgcaggcggaactaattaccagtctagttcagcaagtcctactgaggattctggggatgctgcagaagacactgaccccagttctcagaaagaattatcaagtgattcctcagacacggaccacaattctcagcaagaatttccaattgatcctttttttccaatatgagggcaaggttgaggctgtgggtgatacaattcaacctgagcatcaatctatttcatcaatcaaagagtcaaaaagtatgttcaatgtgaatgtggatcaaaaaacatttggcagtgcagtgagtgaatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="68725" stop="65350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68427" g_stop="68162" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68161" i_stop="66925" i_length="1237">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66924" g_stop="66865" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="326" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66864" i_stop="66763" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66762" g_stop="66637" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="452" r_length="126" r_score="0.897"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66636" i_stop="65903" i_length="734">
            <donor d_prob="0.973" d_score="0.90"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65902" g_stop="65650" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="706" r_length="254" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E484162" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E484162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68427" e_stop="68162"/>
          <exon e_start="66924" e_stop="66865"/>
          <exon e_start="66762" e_stop="66637"/>
          <exon e_start="65902" e_stop="65650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAGAACATGCACCTTCATTGGAAGTATAGGGAATTGGTGAAGGTAATAACGGGGAGGAAAAACATTGAAGAGGTCCACCAAATAGCTAGGATGTTAGAGGCAGAGAGTGGGGGAATACTAGTTGCTGTTGAGCGAGTTAATAAGGGTTATGCGATCATTGTATACCGAGGAAAGAACTACGAAAGGCCTGCTTCATTGAGGCCTCAGACTCTTCTAAGTAAAAGAGAAGCAATGAAGCGCTCTATAGAGGCTCAGCGACGTCAGGTAATGTTGTAGTATTTAAGTAGTATTTAAGGTGCCAGTAAATGCATCTAGAAGTTCCCAGATATAATACCTCTTTATTTTAGTAATTGACTTTGGCTTGGTTTTAAAATTTTGAAGTAGATTTGACCCCTTTATCAACTATACTTTTCTCTCCTTCCATTCAAAATCTAACATTCTGATTCTTTTGTGTATCTCAAAAAAAAAAATAAAAAAAATCTAACGTTCTGATTTACCCACTTAAATATGATTGCAGCTATACATCTCACTTTCTACTAAAAGACTATATGAAGAGTGGCAGAATTGAAATGTAACTTATCCCAGCCAATTTCAGAGTTAGAATGTATTAAAAAACCCAACTTTACTCGAGAAAAGGAAAATCTCCAAAGAGGCCTTTCCTCATGTGGTCTGAAGAATAGCCAACTTTGTCACTCAGTATCAAAATCGTATTATTTTGTGTGATCCACTTTTGTTCGTGGAAGTACGTCGAGTCATTTAAACGTCTAGGCATAAACATGGGGGGTTTTGGTTAAAAAGGAACCATGGTAAGTTTAGCTGTGAAAGAATCCAACATCTAGCCCATCCTTTTATGGACTCCATTGGAAATTCTTGCACTACCCAAGTGCGACAACCATATAATTCAACACCGTCTTGCATGTGTAACCTGATTTGGGTGCAATGATAGACTTACAAAGGTTAGCTCTAGTATATGTGAAAGAATTTGAGCTTTCAGCCCAAAATCATATGGTCATGCTTAGACTTTGGAGTAATCCAAGACCTCGATAGACCACTTTGGAAGCCTTCAACCAATCTAGACATTTAACTACATAACTCAACATAAGGAATAGCTTATGTGTTGGTACTTTAAATTTTTTTTATAATGAGGGCATTTTCCATTTGTTATGTATCTGTTTCTAATTCTTGTTCTCACAACTAGTTAAATTTGCTGGCACTTGTTTCTAGAGATGGTTTTCCTTCTATTATTATCACTGTACTTTTACCATCAAAAAATAGAAAGGGAAATAACAAAAAAGTGTCAGTGTATTTCTGCAACACATTTGAGTTGAGGTGCTGGTGAACCATTTTGTATGACAGTCTGTAAGCTTCTCTAACCTTGTGAGGTTTCTTATTTCTATAGATTTCCATTTATCTCCTCTTCTTTTCACTCGTCTTTCTTTCTGATGCTTCTGCCAAAACTCTTCCACTGCTAATCTTTCTTTTACTTTGTTTTCTGATGCAGTCATTGAAATTACATGTCTTAAAGCTTACACAAAATATAGAGGCTTTGCAGTCACGGTTGGTGTGTTATCTTACCTTATTTGAGTTGCTTTGATTTTTGTGTTCCAGTTACTAGCTCATTTCTAAATTATATTGAAATGTTGCACGATTTGCTTTGGTTCAGGCCAAGAATGAGGAGATAAGTCATATTCAGTCCCCGGATATAGTTGATAGGCAGGTACCCGTGATGGGCATATCAGATGCTGCAGGTGGAACTAATTACCAGTCTATTGTAGCAAGTCCTATTGAGGTGAAAATTAATCCATTTATTGTACAATATTCTGTCACTGTTGAAGGAACAATTATGTTTCGTGTTGCTTCTCATATCTTTGATGCTTGTTGGATTCGAGATCCTTTATCAACCATATATAAGGTACAAGCTAGTGTGTCACCTTCAGAAGTCTTTCAGATACCCCAATAGGCACAAACAACTTGCCTTCAAGTCTTATGCATATTCTTTATGCTTTCATTAAATTTATTAGGACAGCATGTATCGTTAATACCTATGTTTAAGAGATGGATGGATCTGGAGTTTTGTGGACATATAACCACTTGCATCTTATTTTTATGTATGAAAACTTGGTTGTAGAATCCTGTGTCATTGTCTTCTTTAGTCATCATAATTAATGATAAGTCAAAATAGCTGCTGCCCACATGACCCAAATTTGTAATTTAAGGAATTTGATGTTCGTAACCTTTTCTATCTGGGATAGGTTTTTCTGCTTCCCAACTGCATGCTGAATGTCATTGTAAAAACAATCCTTCTAGAATCAAACATTGTTATATGAGTTTCTGTATCATAGAGTACTGAGCAAAATTGAAAAAAAAGGCTCTGCTGATTATGAAATATGTTCAAAATGGTTGATATCAATCAATGGTTAAATGTATGTGGTCCTCAAACTCTGTTGTATCATTTCTTGCACTTTTTATTATTTTGCAGTGTGTATTGATAGAGAGAGAAGCTTATTTAGCTTTTATATTCAGGATTCTGGAGATGCTGCAGAAGACACTGACCCCAGTTCTCAGAAAGAATTATCAAATGATTTCTCGGACACAGACCACGATTCGCAGCAAGAATTTCCAATTAATCC-GTTTTTCCAATATGAGGGCAAGGTTGAGGCTATGGGTGATACAATTCAACCTCAGCATCAATCTATTTCATCAATCAAAGAGTCGAAAAGTATGTTCAATGTGAATGTGGATCAAGAAACATTCGGCAGTGCAGTGAGTGAATCTG</genome_strand>
        <mrna_strand>GAGAGAACATGCACCTTCATTGGAAGTATAGGGAATTGGTAAAGGTAATAACCGGGAGGAAAACCATTGAAGAGGTCCACCAAATAGCTAGGATGTTAGAGGCAGAGAGTGGGGGAATACTAGTTGCTGTTGAGCTAGTTAATAAGGGTCATGCGATCATTGTGTACCGAGGAAAGAACTATGAAAGGCCTGCTTCGTTGAGGCCTCAGACTCTTCTAAGTAAAAGAGAAGCAATGAAGCGCTCTATAGAGGCTCAGCGACGTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGAAATTACATGTCTTAAAGCTTACACAAAATATAGAGGCTTTGCAGTCACGGTTG......................................................................................................GCCAAAAATGAGGAGATGGTTCATATTCAGTCCCCGGATATAGTTGATAGGCAGGTACCAGTGACGGGAATATCTGATGCTGCAGGCGGAACTAATTACCAGTCTAGTTCAGCAAGTCCTACTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCTGGGGATGCTGCAGAAGACACTGACCCCAGTTCTCAGAAAGAATTATCAAGTGATTCCTCAGACACGGACCACAATTCTCAGCAAGAATTTCCAATTGATCCTTTTTTTCCAATATGAGGGCAAGGTTGAGGCTGTGGGTGATACAATTCAACCTGAGCATCAATCTATTTCATCAATCAAAGAGTCAAAAAGTATGTTCAATGTGAATGTGGATCAAAAAACATTTGGCAGTGCAGTGAGTGAATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E483088" ref_strand="+" ref_description="SGN-E483088 [cSTE-7-L22]">
      <seq>gaaagattcatgttgaggaagattggcttgagaatgaagcctttcttacttcttggtaggcggggagtctttgatggaacagtcgagaacatgcaccttcattggaagtatagggaattggtaaaggtaataaccgggaggaaaaccattgaagaggtccaccaaatagctaggatgttagaggcagagagtgggggaatactagttgctgttgagctagttaataagggtcatgcgatcattgtgtaccgaggaaagaactatgaaaggcctgcttcgttgaggcctcagactcttctaagtaaaagagaagcaatgaagcgctctatagaggctcagcgacgtcagtcgttgaaattacatgtcttaaagcttacacaaaatatagaggctttgcagtcacggttggccaaaaatgaggagatggttcatattcagtccccggatatagttgataggcaggtaccagtgacgggaatatctgatgctgcaggcggaactaattaccagtctagttcagcaagtcctactgaggattctggggatgctgcagaagacactgaccccagttctcagaaagaattatcaagtgattcctcagacacggaccacaattctcagcaagaatttccaattgatccttttttccaatatganggcaaagtttgagctgtgggtgatacaattcaacctgagcatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="68893" stop="65436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68593" g_stop="68539" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68538" i_stop="68455" i_length="84">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68454" g_stop="68162" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="348" r_length="293" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68161" i_stop="66925" i_length="1237">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66924" g_stop="66865" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="408" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66864" i_stop="66763" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66762" g_stop="66637" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="534" r_length="126" r_score="0.897"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66636" i_stop="65903" i_length="734">
            <donor d_prob="0.973" d_score="0.90"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65902" g_stop="65736" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="701" r_length="167" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E483088" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E483088" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68593" e_stop="68539"/>
          <exon e_start="68454" e_stop="68162"/>
          <exon e_start="66924" e_stop="66865"/>
          <exon e_start="66762" e_stop="66637"/>
          <exon e_start="65902" e_stop="65736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGATTCATGTTGAGGAAGATTGGCTTGAGAATGAAGCCTTTCTTACTTCTTGGTGAGTGCCTCTGTACTGCAAGCCTATTTGTTTTGCCAACAAATTTATGGAAGTTGACTCATTTATTTCTCTGCTCATGCTCAGGTAGGCGGGGAGTCTTTGATGGAACAGTCGAGAACATGCACCTTCATTGGAAGTATAGGGAATTGGTGAAGGTAATAACGGGGAGGAAAAACATTGAAGAGGTCCACCAAATAGCTAGGATGTTAGAGGCAGAGAGTGGGGGAATACTAGTTGCTGTTGAGCGAGTTAATAAGGGTTATGCGATCATTGTATACCGAGGAAAGAACTACGAAAGGCCTGCTTCATTGAGGCCTCAGACTCTTCTAAGTAAAAGAGAAGCAATGAAGCGCTCTATAGAGGCTCAGCGACGTCAGGTAATGTTGTAGTATTTAAGTAGTATTTAAGGTGCCAGTAAATGCATCTAGAAGTTCCCAGATATAATACCTCTTTATTTTAGTAATTGACTTTGGCTTGGTTTTAAAATTTTGAAGTAGATTTGACCCCTTTATCAACTATACTTTTCTCTCCTTCCATTCAAAATCTAACATTCTGATTCTTTTGTGTATCTCAAAAAAAAAAATAAAAAAAATCTAACGTTCTGATTTACCCACTTAAATATGATTGCAGCTATACATCTCACTTTCTACTAAAAGACTATATGAAGAGTGGCAGAATTGAAATGTAACTTATCCCAGCCAATTTCAGAGTTAGAATGTATTAAAAAACCCAACTTTACTCGAGAAAAGGAAAATCTCCAAAGAGGCCTTTCCTCATGTGGTCTGAAGAATAGCCAACTTTGTCACTCAGTATCAAAATCGTATTATTTTGTGTGATCCACTTTTGTTCGTGGAAGTACGTCGAGTCATTTAAACGTCTAGGCATAAACATGGGGGGTTTTGGTTAAAAAGGAACCATGGTAAGTTTAGCTGTGAAAGAATCCAACATCTAGCCCATCCTTTTATGGACTCCATTGGAAATTCTTGCACTACCCAAGTGCGACAACCATATAATTCAACACCGTCTTGCATGTGTAACCTGATTTGGGTGCAATGATAGACTTACAAAGGTTAGCTCTAGTATATGTGAAAGAATTTGAGCTTTCAGCCCAAAATCATATGGTCATGCTTAGACTTTGGAGTAATCCAAGACCTCGATAGACCACTTTGGAAGCCTTCAACCAATCTAGACATTTAACTACATAACTCAACATAAGGAATAGCTTATGTGTTGGTACTTTAAATTTTTTTTATAATGAGGGCATTTTCCATTTGTTATGTATCTGTTTCTAATTCTTGTTCTCACAACTAGTTAAATTTGCTGGCACTTGTTTCTAGAGATGGTTTTCCTTCTATTATTATCACTGTACTTTTACCATCAAAAAATAGAAAGGGAAATAACAAAAAAGTGTCAGTGTATTTCTGCAACACATTTGAGTTGAGGTGCTGGTGAACCATTTTGTATGACAGTCTGTAAGCTTCTCTAACCTTGTGAGGTTTCTTATTTCTATAGATTTCCATTTATCTCCTCTTCTTTTCACTCGTCTTTCTTTCTGATGCTTCTGCCAAAACTCTTCCACTGCTAATCTTTCTTTTACTTTGTTTTCTGATGCAGTCATTGAAATTACATGTCTTAAAGCTTACACAAAATATAGAGGCTTTGCAGTCACGGTTGGTGTGTTATCTTACCTTATTTGAGTTGCTTTGATTTTTGTGTTCCAGTTACTAGCTCATTTCTAAATTATATTGAAATGTTGCACGATTTGCTTTGGTTCAGGCCAAGAATGAGGAGATAAGTCATATTCAGTCCCCGGATATAGTTGATAGGCAGGTACCCGTGATGGGCATATCAGATGCTGCAGGTGGAACTAATTACCAGTCTATTGTAGCAAGTCCTATTGAGGTGAAAATTAATCCATTTATTGTACAATATTCTGTCACTGTTGAAGGAACAATTATGTTTCGTGTTGCTTCTCATATCTTTGATGCTTGTTGGATTCGAGATCCTTTATCAACCATATATAAGGTACAAGCTAGTGTGTCACCTTCAGAAGTCTTTCAGATACCCCAATAGGCACAAACAACTTGCCTTCAAGTCTTATGCATATTCTTTATGCTTTCATTAAATTTATTAGGACAGCATGTATCGTTAATACCTATGTTTAAGAGATGGATGGATCTGGAGTTTTGTGGACATATAACCACTTGCATCTTATTTTTATGTATGAAAACTTGGTTGTAGAATCCTGTGTCATTGTCTTCTTTAGTCATCATAATTAATGATAAGTCAAAATAGCTGCTGCCCACATGACCCAAATTTGTAATTTAAGGAATTTGATGTTCGTAACCTTTTCTATCTGGGATAGGTTTTTCTGCTTCCCAACTGCATGCTGAATGTCATTGTAAAAACAATCCTTCTAGAATCAAACATTGTTATATGAGTTTCTGTATCATAGAGTACTGAGCAAAATTGAAAAAAAAGGCTCTGCTGATTATGAAATATGTTCAAAATGGTTGATATCAATCAATGGTTAAATGTATGTGGTCCTCAAACTCTGTTGTATCATTTCTTGCACTTTTTATTATTTTGCAGTGTGTATTGATAGAGAGAGAAGCTTATTTAGCTTTTATATTCAGGATTCTGGAGATGCTGCAGAAGACACTGACCCCAGTTCTCAGAAAGAATTATCAAATGATTTCTCGGACACAGACCACGATTCGCAGCAAGAATTTCCAATTAATCCGTTTTTCCAATATGAGGGCAAGGTTGAGGCTATGGGTGATACAATTCAACCTCAGCATCA</genome_strand>
        <mrna_strand>GAAAGATTCATGTTGAGGAAGATTGGCTTGAGAATGAAGCCTTTCTTACTTCTTG....................................................................................GTAGGCGGGGAGTCTTTGATGGAACAGTCGAGAACATGCACCTTCATTGGAAGTATAGGGAATTGGTAAAGGTAATAACCGGGAGGAAAACCATTGAAGAGGTCCACCAAATAGCTAGGATGTTAGAGGCAGAGAGTGGGGGAATACTAGTTGCTGTTGAGCTAGTTAATAAGGGTCATGCGATCATTGTGTACCGAGGAAAGAACTATGAAAGGCCTGCTTCGTTGAGGCCTCAGACTCTTCTAAGTAAAAGAGAAGCAATGAAGCGCTCTATAGAGGCTCAGCGACGTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGAAATTACATGTCTTAAAGCTTACACAAAATATAGAGGCTTTGCAGTCACGGTTG......................................................................................................GCCAAAAATGAGGAGATGGTTCATATTCAGTCCCCGGATATAGTTGATAGGCAGGTACCAGTGACGGGAATATCTGATGCTGCAGGCGGAACTAATTACCAGTCTAGTTCAGCAAGTCCTACTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCTGGGGATGCTGCAGAAGACACTGACCCCAGTTCTCAGAAAGAATTATCAAGTGATTCCTCAGACACGGACCACAATTCTCAGCAAGAATTTCCAATTGATCCTTTTTTCCAATATGANGGCAAAGTTTGAGCTGTGGGTGATACAATTCAACCTGAGCATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E471016" ref_strand="+" ref_description="SGN-E471016 [cSTB-21-L4]">
      <seq>gttatctggagatctggaagtaatataattttgtatcgaggagctgattacaagtatccttatttctctgaaattagctttgagaataacagtgcacaagatgctaccccggacttgttcatgggtacggaagagcatatgactaactcatctggcacagatgcggtaaaacctgatgcatcagacagaaaatctcctccacgtgtaatccagggtgtaggttctccagacagagtccgatttgaattgcctggagaggcagaacatactgaagaagcagacaagttgctggaaggacttggtcctcgctttaccgattggtggggttgtgagccactgcctatcgatgcagatcttttgccagctatagtccctgggtacaagagacctttccgtctacttccttatggagtaaaacctaaattgacaaatgatgaaatgacaacactgaggagacttggtcgacctttaccttgccattttgtattagggagaaacagaaaactccaaggattggctgctgcaattgtgaagctttgggagaaatgtgaaattgcaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="70208" stop="68973"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69908" g_stop="69419" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="490" r_length="490" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69418" i_stop="69345" i_length="74">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69344" g_stop="69273" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="562" r_length="72" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E471016" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E471016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69908" e_stop="69419"/>
          <exon e_start="69344" e_stop="69273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATATGGAGATCTGGAAGTAATATAATTTTGTATAGAGGAGCTGATTACAAGTATCCTTATTTCTCTGAGAATAGCTTCGAGAATAACAGTGCACAAGATGCTAACCCTGACTTGTTCATGGGTGCGGAAGAGCACATGACTAACTCATCTGGCATAGATGCGGTAAAATCTGATGCATCGGACAGAAAATCTCCTCCACGTGTAATCCAGGGTGTAGGTTCTCCAGACAGAGTCCGATTTGAATTGCCTGGAGAGGCAGAACATACTGAAGAAGCAGACAAGTTGCTGGAAGGACTTGGTCCTCGCTTTACCGATTGGTGGGGTTGTGAGCCACTGCCTATTGATGCAGATCTTTTGCCAGCTATAGTCCCCGGGTACAAGAGACCTTTCCGTCTACTTCCTTATGGAGTAAAACCTAAATTGACAAATGACGAAATGACAACACTGAGGAGACTTGGTCGACCTTTGCCTTGCCATTTTGTATTAGGTAAGCTTAATCTGATTTCAAAGTGTTATTTAACTAGAAAACACTTGTTATACTTGCTCGTGTATCTTTATCAGGAAGAAACAGAAAACTTCAAGGATTGGCTGCTGCAATTGTGAAGCTATGGGAGAAATGTGAAATTGCAAAAG</genome_strand>
        <mrna_strand>GTTATCTGGAGATCTGGAAGTAATATAATTTTGTATCGAGGAGCTGATTACAAGTATCCTTATTTCTCTGAAATTAGCTTTGAGAATAACAGTGCACAAGATGCTACCCCGGACTTGTTCATGGGTACGGAAGAGCATATGACTAACTCATCTGGCACAGATGCGGTAAAACCTGATGCATCAGACAGAAAATCTCCTCCACGTGTAATCCAGGGTGTAGGTTCTCCAGACAGAGTCCGATTTGAATTGCCTGGAGAGGCAGAACATACTGAAGAAGCAGACAAGTTGCTGGAAGGACTTGGTCCTCGCTTTACCGATTGGTGGGGTTGTGAGCCACTGCCTATCGATGCAGATCTTTTGCCAGCTATAGTCCCTGGGTACAAGAGACCTTTCCGTCTACTTCCTTATGGAGTAAAACCTAAATTGACAAATGATGAAATGACAACACTGAGGAGACTTGGTCGACCTTTACCTTGCCATTTTGTATTAG..........................................................................GGAGAAACAGAAAACTCCAAGGATTGGCTGCTGCAATTGTGAAGCTTTGGGAGAAATGTGAAATTGCAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E739060" ref_strand="+" ref_description="SGN-E739060 [LC16AA01]">
      <seq>ctatggaagttgcagaaacccttctaaaaccctcttaaaaccctcaccatcacattccctcttctctagtacaccctctctttctccaaaacccttctttcctcgtgattcccttcctgttttcgccgcatcccctgatactgaagctttaccggaatccgccatccgaagaatcgccgacaagctacgcagtcttggatttgttgaacaacccaagaatcaagaaacccaagaaaatgctttgagttctaatcccactgcaaactcacccggtcaaattttcgttcctttgcctacccaattacccaagtaccgcgtgggtcacacgcttgacaccagttggagtacgcctgaaaacccagtaccgcagcctggtttagggaaatctatacagaagtttcatgaattgagggatgagttcttgaaggagaaggacaaggagaggttgaagaataaggagtataagaaagagagagcgcctagtttggcggagcttactttgccagctgaggaattgaggaggctgaggacagttgggattgcgctcaggaaaaagttaaagattggaaaggctgggattactgaggggattgtgaatggtattcatgaaagatggaggcgtatcgagcttgttaaaattacgtgcgaggacatatgtaggttgaatatgaagaggactcatgagttgttagagaagaaaactggaggtcttgttatatggagatctggaagtaatataattttgtatagaggagctgattacaagtatccttatttctctgagaatagcttcgagaataacagtgcacaagatgctaaccctgacttgttcatgggtgcggaagagcacatgactaactcatctggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="71380" stop="69453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71092" g_stop="70399" g_length="694"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="694" r_length="694" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70398" i_stop="69927" i_length="472">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.218" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69926" g_stop="69753" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="695" r_stop="868" r_length="174" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E739060" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>868</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71092" e_stop="70399"/>
          <exon e_start="69926" e_stop="69753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTTCCATCCCATAAACCCTTCTAAAACCCTCTTAAAACCCTCACCATCACATTCCCTCTTCTCTAGTACACCCTCTCTTTCTCCAAAACCCTTCTTTCCTCGTGATTCCCTTCCTGTTTTCGCCGCATCCCCTGATACTGAAGCTTTACCGGAATCCGCCATCCGAAGAATCGCCGACAAGCTACGCAGTCTTGGATTTGTTGAACAACCCAAGAATCAAGAAACCCAAGAAAATGCTTTGAGTTCTAATCCCACTGCAAACTCACCCGGTCAAATTTTCGTTCCTTTGCCTACCCAATTACCCAAGTACCGCGTGGGTCACACGCTTGACACCAGTTGGAGTACGCCTGAAAACCCAGTACCGCAGCCTGGTTTAGGGAAATCTATACAGAAGTTTCATGAATTGAGGGATGAGTTCTTGAAGGAGAAGGACAAGGAGAGGTTGAAGAATAAGGAGTATAAGAAAGAGAGAGCGCCTAGTTTGGCGGAGCTTACTTTGCCAGCTGAGGAATTGAGGAGGCTGAGGACAGTTGGGATTGCGCTCAGGAAAAAGTTAAAGATTGGAAAGGCTGGGATTACTGAGGGGATTGTGAATGGTATTCATGAAAGATGGAGGCGTATCGAGCTTGTTAAAATTACGTGCGAGGACATATGTAGGTTGAATATGAAGAGGACTCATGAGTTGTTAGAGGTTAATAATACTTACACCCCAATACTCAATTGTCATTGTTTAAAGAAATTGAAACTGCATTCTTGGATTTTCCTGTGTAGATTAATGTAAGAAAACAATATGAAACAGCTTCACTTTGGCAATTTCTTCAGCCCTCTGTGTTGCATATTTAATTAAAGAAAGTGAGTTAATTGCCTTAGAGGACATGGATACCAGAAGAATGTATGCAACTGGTTTACTGATCCTATGGTTGTTTGCCCTGCACTTCTCTATACCACTAATTCTGAGTATATGAATTTACTTTTCCTTTAGATGTCTCAGATATGTTATATTCTATATGACATGAGTTTCCTGATCAAGAATTATAATGGTTTGGTGTTTAACCGTATTGCTTTTTCATAGGTAGAATTCATAGCTCGTAAGTTAGTTTTAATGTGCAGTACACCTCTACCATAATTCTTATCATTACTTTGGCTTATTTAAATATTCACAGAAGAAAACTGGAGGTCTTGTTATATGGAGATCTGGAAGTAATATAATTTTGTATAGAGGAGCTGATTACAAGTATCCTTATTTCTCTGAGAATAGCTTCGAGAATAACAGTGCACAAGATGCTAACCCTGACTTGTTCATGGGTGCGGAAGAGCACATGACTAACTCATCTGGC</genome_strand>
        <mrna_strand>CTATGGAAGTTGCAGAAACCCTTCTAAAACCCTCTTAAAACCCTCACCATCACATTCCCTCTTCTCTAGTACACCCTCTCTTTCTCCAAAACCCTTCTTTCCTCGTGATTCCCTTCCTGTTTTCGCCGCATCCCCTGATACTGAAGCTTTACCGGAATCCGCCATCCGAAGAATCGCCGACAAGCTACGCAGTCTTGGATTTGTTGAACAACCCAAGAATCAAGAAACCCAAGAAAATGCTTTGAGTTCTAATCCCACTGCAAACTCACCCGGTCAAATTTTCGTTCCTTTGCCTACCCAATTACCCAAGTACCGCGTGGGTCACACGCTTGACACCAGTTGGAGTACGCCTGAAAACCCAGTACCGCAGCCTGGTTTAGGGAAATCTATACAGAAGTTTCATGAATTGAGGGATGAGTTCTTGAAGGAGAAGGACAAGGAGAGGTTGAAGAATAAGGAGTATAAGAAAGAGAGAGCGCCTAGTTTGGCGGAGCTTACTTTGCCAGCTGAGGAATTGAGGAGGCTGAGGACAGTTGGGATTGCGCTCAGGAAAAAGTTAAAGATTGGAAAGGCTGGGATTACTGAGGGGATTGTGAATGGTATTCATGAAAGATGGAGGCGTATCGAGCTTGTTAAAATTACGTGCGAGGACATATGTAGGTTGAATATGAAGAGGACTCATGAGTTGTTAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAAACTGGAGGTCTTGTTATATGGAGATCTGGAAGTAATATAATTTTGTATAGAGGAGCTGATTACAAGTATCCTTATTTCTCTGAGAATAGCTTCGAGAATAACAGTGCACAAGATGCTAACCCTGACTTGTTCATGGGTGCGGAAGAGCACATGACTAACTCATCTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E739048" ref_strand="+" ref_description="SGN-E739048 [LC15DG10]">
      <seq>atcatcttcctcaacaccaatgttgcttcctttctgcaacttccatcccataaacccttctaaaaccctcttaaaaccctcaccatcacattccctcttctctagtacaccctctctttctccaaaacccttctttcctcgtgattcccttcctgttttcgccgcatcccctgatactgaagctttaccggaatccgccatccgaagaatcgccgacaagctacgcagtcttggatttgttgaacaacccaagaatcaagaaacccaagaaaatgctttgagttctaatcccactgcaaactcacccggtcaaattttcgttcctttgcctacccaattacccaagtaccgcgtgggtcacacgcttgacaccagttggagtacgcctgaaaacccagtaccgcagcctggtttagggaaatctatacagaagtttcatgaattgagggatgagttcttgaaggagaaggacaaggagaggttgaagaataaggagtataagaaagagagagcgcctagtttggcggagcttactttgccagctgaggaattgaggaggctgaggacagttgggattgcgctcaggaaaaagttaaagattggaaaggctgggattactgaggggattgtgaatggtattcatgaaagatggaggcgtatcgagcttgttaaaattacgtgcgaggacatatgtaggttgaatatgaagaggactcatgagttgttagagaagaaaactggagggctggttatatggagatctggaagtaatataattttgtataga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="71428" stop="69570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71128" g_stop="70399" g_length="730"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="730" r_length="730" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70398" i_stop="69927" i_length="472">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.218" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69926" g_stop="69870" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="731" r_stop="787" r_length="57" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E739048" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71128" e_stop="70399"/>
          <exon e_start="69926" e_stop="69870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATCTTCCTCAACACCAATGTTGCTTCCTTTCTGCAACTTCCATCCCATAAACCCTTCTAAAACCCTCTTAAAACCCTCACCATCACATTCCCTCTTCTCTAGTACACCCTCTCTTTCTCCAAAACCCTTCTTTCCTCGTGATTCCCTTCCTGTTTTCGCCGCATCCCCTGATACTGAAGCTTTACCGGAATCCGCCATCCGAAGAATCGCCGACAAGCTACGCAGTCTTGGATTTGTTGAACAACCCAAGAATCAAGAAACCCAAGAAAATGCTTTGAGTTCTAATCCCACTGCAAACTCACCCGGTCAAATTTTCGTTCCTTTGCCTACCCAATTACCCAAGTACCGCGTGGGTCACACGCTTGACACCAGTTGGAGTACGCCTGAAAACCCAGTACCGCAGCCTGGTTTAGGGAAATCTATACAGAAGTTTCATGAATTGAGGGATGAGTTCTTGAAGGAGAAGGACAAGGAGAGGTTGAAGAATAAGGAGTATAAGAAAGAGAGAGCGCCTAGTTTGGCGGAGCTTACTTTGCCAGCTGAGGAATTGAGGAGGCTGAGGACAGTTGGGATTGCGCTCAGGAAAAAGTTAAAGATTGGAAAGGCTGGGATTACTGAGGGGATTGTGAATGGTATTCATGAAAGATGGAGGCGTATCGAGCTTGTTAAAATTACGTGCGAGGACATATGTAGGTTGAATATGAAGAGGACTCATGAGTTGTTAGAGGTTAATAATACTTACACCCCAATACTCAATTGTCATTGTTTAAAGAAATTGAAACTGCATTCTTGGATTTTCCTGTGTAGATTAATGTAAGAAAACAATATGAAACAGCTTCACTTTGGCAATTTCTTCAGCCCTCTGTGTTGCATATTTAATTAAAGAAAGTGAGTTAATTGCCTTAGAGGACATGGATACCAGAAGAATGTATGCAACTGGTTTACTGATCCTATGGTTGTTTGCCCTGCACTTCTCTATACCACTAATTCTGAGTATATGAATTTACTTTTCCTTTAGATGTCTCAGATATGTTATATTCTATATGACATGAGTTTCCTGATCAAGAATTATAATGGTTTGGTGTTTAACCGTATTGCTTTTTCATAGGTAGAATTCATAGCTCGTAAGTTAGTTTTAATGTGCAGTACACCTCTACCATAATTCTTATCATTACTTTGGCTTATTTAAATATTCACAGAAGAAAACTGGAGGTCTTGTTATATGGAGATCTGGAAGTAATATAATTTTGTATAGA</genome_strand>
        <mrna_strand>ATCATCTTCCTCAACACCAATGTTGCTTCCTTTCTGCAACTTCCATCCCATAAACCCTTCTAAAACCCTCTTAAAACCCTCACCATCACATTCCCTCTTCTCTAGTACACCCTCTCTTTCTCCAAAACCCTTCTTTCCTCGTGATTCCCTTCCTGTTTTCGCCGCATCCCCTGATACTGAAGCTTTACCGGAATCCGCCATCCGAAGAATCGCCGACAAGCTACGCAGTCTTGGATTTGTTGAACAACCCAAGAATCAAGAAACCCAAGAAAATGCTTTGAGTTCTAATCCCACTGCAAACTCACCCGGTCAAATTTTCGTTCCTTTGCCTACCCAATTACCCAAGTACCGCGTGGGTCACACGCTTGACACCAGTTGGAGTACGCCTGAAAACCCAGTACCGCAGCCTGGTTTAGGGAAATCTATACAGAAGTTTCATGAATTGAGGGATGAGTTCTTGAAGGAGAAGGACAAGGAGAGGTTGAAGAATAAGGAGTATAAGAAAGAGAGAGCGCCTAGTTTGGCGGAGCTTACTTTGCCAGCTGAGGAATTGAGGAGGCTGAGGACAGTTGGGATTGCGCTCAGGAAAAAGTTAAAGATTGGAAAGGCTGGGATTACTGAGGGGATTGTGAATGGTATTCATGAAAGATGGAGGCGTATCGAGCTTGTTAAAATTACGTGCGAGGACATATGTAGGTTGAATATGAAGAGGACTCATGAGTTGTTAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAAACTGGAGGGCTGGTTATATGGAGATCTGGAAGTAATATAATTTTGTATAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E439635" ref_strand="+" ref_description="SGN-E439635 [cSTA-12-N20]">
      <seq>caatgtaaggatagcatcatcttccccaacaccaatgttgctacctttctgcaacttccatcccataaacccttctaaaaccctcttaaacccctcaccatcacattccctcttctctactacaccctctttttccctaaaacccttctttcctcgtaatacccttcctgttttcgccacatcccctgatactgaagctttaccggaatccgccatccgaagaatcgccgacaagctacgcagacttggatttgttgaagaacccaagaatcaagaaacccaagaaaatgctttgagttctaatcccactgctaactcacccggtcaaatttttgttcctttgcctacgcaactacccaagtaccgtgtgggtcacacacttgacaccagttggagtacgcctgaaaacccagtaccgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="71443" stop="70425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71143" g_stop="70725" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E439635" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E439635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71143" e_stop="70725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGTAAGGATAGCATCATCTTCCTCAACACCAATGTTGCTTCCTTTCTGCAACTTCCATCCCATAAACCCTTCTAAAACCCTCTTAAAACCCTCACCATCACATTCCCTCTTCTCTAGTACACCCTCTCTTTCTCCAAAACCCTTCTTTCCTCGTGATTCCCTTCCTGTTTTCGCCGCATCCCCTGATACTGAAGCTTTACCGGAATCCGCCATCCGAAGAATCGCCGACAAGCTACGCAGTCTTGGATTTGTTGAACAACCCAAGAATCAAGAAACCCAAGAAAATGCTTTGAGTTCTAATCCCACTGCAAACTCACCCGGTCAAATTTTCGTTCCTTTGCCTACCCAATTACCCAAGTACCGCGTGGGTCACACGCTTGACACCAGTTGGAGTACGCCTGAAAACCCAGTACCGC</genome_strand>
        <mrna_strand>CAATGTAAGGATAGCATCATCTTCCCCAACACCAATGTTGCTACCTTTCTGCAACTTCCATCCCATAAACCCTTCTAAAACCCTCTTAAACCCCTCACCATCACATTCCCTCTTCTCTACTACACCCTCTTTTTCCCTAAAACCCTTCTTTCCTCGTAATACCCTTCCTGTTTTCGCCACATCCCCTGATACTGAAGCTTTACCGGAATCCGCCATCCGAAGAATCGCCGACAAGCTACGCAGACTTGGATTTGTTGAAGAACCCAAGAATCAAGAAACCCAAGAAAATGCTTTGAGTTCTAATCCCACTGCTAACTCACCCGGTCAAATTTTTGTTCCTTTGCCTACGCAACTACCCAAGTACCGTGTGGGTCACACACTTGACACCAGTTGGAGTACGCCTGAAAACCCAGTACCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E281123" ref_strand="+" ref_description="SGN-E281123 [cLER-7-B9]">
      <seq>tggaacttgcggcaagaaagatcctgagaacccatcttgtgccaaaattaccctcgtaggaaagttgaaagtggttgctggagatccaaaggaaactagctttgctcaaactgctttatttacaaaacaccctgagatggaagggtggcccaagagtcacgatttccagatatacaaattatagattgaagagatatttatgatcaattggtttggtggtcccaaacctctcaccgtggatcagtatttgcaggctaaaatggatagtcacatgaccattgcatgaacgcctttatgtatacaatctgctgacaagttcttttcaagtgaaggttgaaagtggttttggaatgtgaaaaaagggtatcaattttagtgatcaatgaaattcaactgtaaataggagatacttgtgaagctcattatcattcattcacttgtgcatttgacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="74192" stop="71889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73892" g_stop="73829" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73828" i_stop="72817" i_length="1012">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72816" g_stop="72738" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="143" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72737" i_stop="72648" i_length="90">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72647" g_stop="72530" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="261" r_length="118" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72529" i_stop="72380" i_length="150">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72379" g_stop="72189" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="452" r_length="191" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E281123" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73892" e_stop="73829"/>
          <exon e_start="72816" e_stop="72738"/>
          <exon e_start="72647" e_stop="72530"/>
          <exon e_start="72379" e_stop="72189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAACTTGCGGCAAGAAAGATCCTGAGAACCCATCTTGTGCCAAAATTACCCTCGTAGGAAAGGTGGTTGCACTAACAACTCTTCTCCTTTATACAAGAGATTTTATTTAATTTGATGCAGGTGTCTTTTAAACAAGAGTTTTTTGTATCATGCCGAATATTCTGTATCCCACTCTTTCAGGGCATATTTTCACTCCAAAGTTCAGCGTATCCCCCTTAGTTCTACATTTAGAAATGAACAGTAAAAGAGGAAATACTTACAAAGGAGGATAAAAGACCTTAGGGAGAATGGAGCCCCACTTTTTGTTGTGGATTCTATACAAGGATAATGAGGAAGGGGCCCTCTTGCCAAACCTTATAAAAGATAATTAGGGAGACTCATCTACGGATGAGAATCTCTAAGAAAAATTTGAGCTCTGAGATCTTGACACGTAACTGGACATACTAAATGCAAGGTTAGCTAGTAGTAAGCTTGACTTTAATTGGATTTTGATCCAAATATTGATATATTCGAGGTTAGTTTCTCAGATGTTCATGCAATGCATGAGGATATATTATTAAAGTTAATTTTTTCACGCAATACTTGAGGATATAAAAGACATTTCAGGTATTATGGTAATTTGAGTCATCCTGAAACTCAATATTATGCTTGCTCGCAGAAGTTAGAAAGTATACTTGCATATTGCTGCACACATTTAATTCTGAAACAGACTGGTAGTCTGAACTTTCCACTAACTGGTTCCTTGGTAATCATTTGCCCTCAACTTTTCACTATGACACTGTAGTCGGTCTGCATCAATGTAGAAAAGAAAAGAGGAAACTAAAAAACATAATATGGATAATTGGAGAATCTGTTTTCACCATGGTTGTTATCATTATATGTTGTGCTAATTGAAGCAATTACGACGTTGATGGGTTCACTCGTTAAGCATATGAAGTACATGCTGATATGCAAACGTGTGGCTTGGATGTCCAGAAAACTAAGAGTTGATTTGTAGTTCCTTTGTTCTTAAGTGTAAGTATATCGTCCACATTCTTGCTAACATTATCATACTTTGTGTCTGTGCTGTTTTAGTTGAAAGTGGTTGCTGGAGATCCAAAGGAAACTAGCTTTGCTCAAACTGCTTTATTTACAAAACACCCTGAGATGGAAGGTAAATGTCTTGGATCTGCCATTCTAAACTACTACTGTCGTCCTATGTTTACTTTTGTTAACAACAACCCTCACATGTAACTAATGGCAGGTTGGCCCAAGAGTCACGATTTCCAGATATACAAATTAGAGATTGAAGAGATATTTATGATCAATTGGTTTGGTGGTCCCAAACCTCTCACCGTGGATCAGTATTTGCAGGCTAAAATGTAAGTTTAGACTTAAGAGCTGTAAGGAAGTTGCTAAAGAAAAAATCTGATATTGTAGATGCTCAATGAATTGAAAAAATAAATAAAATGTTACTACCATTAGTTTCAGCGTTGATGTCATTCCTTACTTAACACACGATCCATACGCAGGGATAGTCACATGACCATTGCATGAACGCCTTTATGTATACAATCTGCTGACAAGTTCTTTTCAAGTGAAGGTTGAAAGTGGTTTTGGAATGTGAAAAAAGGGTATCAATTTTAGTGATCAATGAAATTCAACTGTAAATAGGAGATACTTGTGAAGCTCATTATCATTCATTCACTTGTGCATTTGACAT</genome_strand>
        <mrna_strand>TGGAACTTGCGGCAAGAAAGATCCTGAGAACCCATCTTGTGCCAAAATTACCCTCGTAGGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAAGTGGTTGCTGGAGATCCAAAGGAAACTAGCTTTGCTCAAACTGCTTTATTTACAAAACACCCTGAGATGGAAG..........................................................................................GGTGGCCCAAGAGTCACGATTTCCAGATATACAAATTATAGATTGAAGAGATATTTATGATCAATTGGTTTGGTGGTCCCAAACCTCTCACCGTGGATCAGTATTTGCAGGCTAAAAT......................................................................................................................................................GGATAGTCACATGACCATTGCATGAACGCCTTTATGTATACAATCTGCTGACAAGTTCTTTTCAAGTGAAGGTTGAAAGTGGTTTTGGAATGTGAAAAAAGGGTATCAATTTTAGTGATCAATGAAATTCAACTGTAAATAGGAGATACTTGTGAAGCTCATTATCATTCATTCACTTGTGCATTTGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E712909" ref_strand="+" ref_description="SGN-E712909 [FB06AF08]">
      <seq>cagtactctgcaaacactcctacatttgtacagtaaacatcatgaatatcatcaacagggcagcttcgatttttcttcttttggtgttcttcttggcttttttcaaagattctgttcatgggcgccctcttttactgtcaatgtccagacccaagccggatgatgctgccttatttgctcgatggctcgtttctcagaattattggggtgtcctcaatactatagcaagtgatatgggaggagcaccgttcgggaatgttgtctcatttagtgatgggttaccggacaaaggccgtggtataccatacttctacttaacaacgcttgatcccactgctagaaatgcattgaaagaccagagatcatcatttacaatcagtgagtacgccattggaacttgcggcaagaaagatcctgagaacccatcttgtgccaaaattaccctcgtaggaaagttgaaagtggttgctggagatccaaaggaaactagctttgctcaaactgctttatttacaaaacaccctgagatggaaggttggcccaagagtcacgatttccagatatacaaattagagattgaagagatatttatgatcaattggtttggtggtcccaaacctctcaccgtggatcagtatttgcaggctaaaatgtaagtttagacttaagagctgtaaggaagttgctaaagaaaaaatctgatattgtagatgctcaatgaattgaaaaaataaataaaatgttactaccattagtttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="75744" stop="72122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75444" g_stop="75228" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75227" i_stop="74686" i_length="542">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74685" g_stop="74650" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="253" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74649" i_stop="74031" i_length="619">
            <donor d_prob="0.934" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74030" g_stop="73829" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="455" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73828" i_stop="72817" i_length="1012">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72816" g_stop="72738" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="534" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72737" i_stop="72648" i_length="90">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72647" g_stop="72412" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="770" r_length="236" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E712909" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75444" e_stop="75228"/>
          <exon e_start="74685" e_stop="74650"/>
          <exon e_start="74030" e_stop="73829"/>
          <exon e_start="72816" e_stop="72738"/>
          <exon e_start="72647" e_stop="72412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTACTCTGCAAACACTCCTACATTTGTACAGTAAACATCATGAATATCATCAACAGGGCAGCTTCGATTTTTCTTCTTTTGGTGTTCTTCTTGGCTTTTTTCAAAGATTCTGTTCATGGGCGCCCTCTTTTACTGTCAATGTCCAGACCCAAGCCGGATGATGCTGCCTTATTTGCTCGATGGCTCGTTTCTCAGAATTATTGGGGTGTCCTCAAGTATGTAGTAGTTCTCTTTTTTCTAACTGAAAGATCGAATCTTTTACTTCGATTTGTTATTTTTAGTCAACCCCAGTTGGTTTGGGATATTGATTGTTGTTGATTTTGCTTCATAGTTCATGACCTAGACAGATCGAGATTCTTGATTGATTGCTGTAAGTGTAAAGACATAATTTTTCTTGTTTCTTGTGTAGCACAACTTCTCAGTTACTCCTTTTGTTTCAGTTTATTTGTCTAATTTTGACCTTGATATGGAGTGTTTAAAAGTAAAGAAAAATTTGAATATTGTGGTGTTAAACTAAAGATATGCAGAATGTATAGTATTTTGACATGCTACGTGAAAAGTTGGATTGAAGAGTGCCCAAAAAAGGAAGAGAACTTCTTTTGAAACAACAAACAAATTGAAATGGATCTGCATTAAAGATGTTTCATTTGTGGCAGCTAAAGTCAACTTATTGCCTATAACAGATAACTGTACTGACTAAATAAATAATAACTGATAATTTTACCTGAAAGCTGATTCAGTGACCTTTCTTTTGCAGTACTATAGCAAGTGATATGGGAGGAGCACCGTTCGGGTATGTATGTTAGCCTATATCTCTGTAAATTGTTTGGGGAGCTATTTTGTTTGTTTTAAGTTTTGCTTATGGATGGATTGAGATTATCTGATAGTCCTAAAAGTTGACTCTTTTGGAAAGCTTTTCTGCAGTCATGTATTTCCTGATGCTCAGAATTCTCATTTTACTACCAAAAAGGAAAGAAAAAGGTTTCGGGATGTCCTTTATTTAATGTTAACTTCATAAGGGAGGGGTCAACCTGATTGTCATCATGTTATTTGGTATTAGAAATGTATTTGTTTTTGCCATTACTCTTATAGCATACAATTTACAGTATTTCTTTTAGTGCATTCTGAAGCTGCATGATCGTAAGTCAAGTATCACTTTAGGAAAAGGAAATGTCTACATAAGAAAGTGGAATGGTGATAATTTTAATTCAGGTGATAGTTCTTTGTTCGATTTTGAAGGGGTTTGGACTTTGAATTCTTTGAAATCTATCAACATAGAATTTCATGTTTCTTGAACCCCGATAAATTTTAGGACAAGAGATGGAGGATTTGTGGAATGAGATGTTTTATGGATTTGATGCTGTTCAAGCTTGTTTTAGTAGTCTTATCTTGAAGTACTTTCTGTTGTGCAGGAATGTTGTCTCATTTAGTGATGGGTTACCGGACAAAGGCCGTGGTATACCATACTTCTACTTAACAACGCTTGATCCCACTGCTAGAAATGCATTGAAAGACCAGAGATCATCATTTACAATCAGTGAGTACGCCATTGGAACTTGCGGCAAGAAAGATCCTGAGAACCCATCTTGTGCCAAAATTACCCTCGTAGGAAAGGTGGTTGCACTAACAACTCTTCTCCTTTATACAAGAGATTTTATTTAATTTGATGCAGGTGTCTTTTAAACAAGAGTTTTTTGTATCATGCCGAATATTCTGTATCCCACTCTTTCAGGGCATATTTTCACTCCAAAGTTCAGCGTATCCCCCTTAGTTCTACATTTAGAAATGAACAGTAAAAGAGGAAATACTTACAAAGGAGGATAAAAGACCTTAGGGAGAATGGAGCCCCACTTTTTGTTGTGGATTCTATACAAGGATAATGAGGAAGGGGCCCTCTTGCCAAACCTTATAAAAGATAATTAGGGAGACTCATCTACGGATGAGAATCTCTAAGAAAAATTTGAGCTCTGAGATCTTGACACGTAACTGGACATACTAAATGCAAGGTTAGCTAGTAGTAAGCTTGACTTTAATTGGATTTTGATCCAAATATTGATATATTCGAGGTTAGTTTCTCAGATGTTCATGCAATGCATGAGGATATATTATTAAAGTTAATTTTTTCACGCAATACTTGAGGATATAAAAGACATTTCAGGTATTATGGTAATTTGAGTCATCCTGAAACTCAATATTATGCTTGCTCGCAGAAGTTAGAAAGTATACTTGCATATTGCTGCACACATTTAATTCTGAAACAGACTGGTAGTCTGAACTTTCCACTAACTGGTTCCTTGGTAATCATTTGCCCTCAACTTTTCACTATGACACTGTAGTCGGTCTGCATCAATGTAGAAAAGAAAAGAGGAAACTAAAAAACATAATATGGATAATTGGAGAATCTGTTTTCACCATGGTTGTTATCATTATATGTTGTGCTAATTGAAGCAATTACGACGTTGATGGGTTCACTCGTTAAGCATATGAAGTACATGCTGATATGCAAACGTGTGGCTTGGATGTCCAGAAAACTAAGAGTTGATTTGTAGTTCCTTTGTTCTTAAGTGTAAGTATATCGTCCACATTCTTGCTAACATTATCATACTTTGTGTCTGTGCTGTTTTAGTTGAAAGTGGTTGCTGGAGATCCAAAGGAAACTAGCTTTGCTCAAACTGCTTTATTTACAAAACACCCTGAGATGGAAGGTAAATGTCTTGGATCTGCCATTCTAAACTACTACTGTCGTCCTATGTTTACTTTTGTTAACAACAACCCTCACATGTAACTAATGGCAGGTTGGCCCAAGAGTCACGATTTCCAGATATACAAATTAGAGATTGAAGAGATATTTATGATCAATTGGTTTGGTGGTCCCAAACCTCTCACCGTGGATCAGTATTTGCAGGCTAAAATGTAAGTTTAGACTTAAGAGCTGTAAGGAAGTTGCTAAAGAAAAAATCTGATATTGTAGATGCTCAATGAATTGAAAAAATAAATAAAATGTTACTACCATTAGTTTCAGCGTTGATGT</genome_strand>
        <mrna_strand>CAGTACTCTGCAAACACTCCTACATTTGTACAGTAAACATCATGAATATCATCAACAGGGCAGCTTCGATTTTTCTTCTTTTGGTGTTCTTCTTGGCTTTTTTCAAAGATTCTGTTCATGGGCGCCCTCTTTTACTGTCAATGTCCAGACCCAAGCCGGATGATGCTGCCTTATTTGCTCGATGGCTCGTTTCTCAGAATTATTGGGGTGTCCTCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTATAGCAAGTGATATGGGAGGAGCACCGTTCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGTTGTCTCATTTAGTGATGGGTTACCGGACAAAGGCCGTGGTATACCATACTTCTACTTAACAACGCTTGATCCCACTGCTAGAAATGCATTGAAAGACCAGAGATCATCATTTACAATCAGTGAGTACGCCATTGGAACTTGCGGCAAGAAAGATCCTGAGAACCCATCTTGTGCCAAAATTACCCTCGTAGGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAAGTGGTTGCTGGAGATCCAAAGGAAACTAGCTTTGCTCAAACTGCTTTATTTACAAAACACCCTGAGATGGAAG..........................................................................................GTTGGCCCAAGAGTCACGATTTCCAGATATACAAATTAGAGATTGAAGAGATATTTATGATCAATTGGTTTGGTGGTCCCAAACCTCTCACCGTGGATCAGTATTTGCAGGCTAAAATGTAAGTTTAGACTTAAGAGCTGTAAGGAAGTTGCTAAAGAAAAAATCTGATATTGTAGATGCTCAATGAATTGAAAAAATAAATAAAATGTTACTACCATTAGTTTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E718824" ref_strand="+" ref_description="SGN-E718824 [FC05DG05]">
      <seq>gggcgattggcggccaatcggccgaattgactcctacatttgtacagtaaacatcatgaatatcatcaacagggcagcttcgatttttcttcttttggtgttcttcttggcttttttcaaagattctgttcatgggcgccctcttttactgtcaatgtccagacccaagccggatgatgctgccttatttgctcgatggctcgtttctcaaaattattggggtgtcctcaatactatagcaagtgatatgggaggagcaccgttcgggaatgttgtctcatttagtgatgggttaccggacaaaggccgtggtataccatacttctacttaacaacgcttgatcccactgctagaaatgcattgaaagaccagagatcatcatttacaatcagtgagtacgccattggaacttgcggcaagaaagatcctgagaacccatcttgtgccaaaattaccctcgtaggaaagttgaaagtggttgctggagatccaaaggaaactagctttgctcaaactgctttatttacaaaacaccctgagatggaaggttggcccaagagtcacgatttccagatatacaaattagagattgaagagatatttatgatcaattggtttggtggtcccaaacctctcaccgtggatcagtatttgcaggctaaaatgtaagtttagacttaagagctgtaaggaagttgctaaagaaaaaatctgatattgtagatgctcaatgaattgaaaaaataaataaaatgttactaccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="75729" stop="72131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75429" g_stop="75228" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="231" r_length="202" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75227" i_stop="74686" i_length="542">
            <donor d_prob="0.953" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74685" g_stop="74650" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="267" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74649" i_stop="74031" i_length="619">
            <donor d_prob="0.934" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74030" g_stop="73829" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="469" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73828" i_stop="72817" i_length="1012">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72816" g_stop="72738" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="548" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72737" i_stop="72648" i_length="90">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72647" g_stop="72432" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="764" r_length="216" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="765" polyA_stop="782"/>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E718824" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718824" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75429" e_stop="75228"/>
          <exon e_start="74685" e_stop="74650"/>
          <exon e_start="74030" e_stop="73829"/>
          <exon e_start="72816" e_stop="72738"/>
          <exon e_start="72647" e_stop="72432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCCTACATTTGTACAGTAAACATCATGAATATCATCAACAGGGCAGCTTCGATTTTTCTTCTTTTGGTGTTCTTCTTGGCTTTTTTCAAAGATTCTGTTCATGGGCGCCCTCTTTTACTGTCAATGTCCAGACCCAAGCCGGATGATGCTGCCTTATTTGCTCGATGGCTCGTTTCTCAGAATTATTGGGGTGTCCTCAAGTATGTAGTAGTTCTCTTTTTTCTAACTGAAAGATCGAATCTTTTACTTCGATTTGTTATTTTTAGTCAACCCCAGTTGGTTTGGGATATTGATTGTTGTTGATTTTGCTTCATAGTTCATGACCTAGACAGATCGAGATTCTTGATTGATTGCTGTAAGTGTAAAGACATAATTTTTCTTGTTTCTTGTGTAGCACAACTTCTCAGTTACTCCTTTTGTTTCAGTTTATTTGTCTAATTTTGACCTTGATATGGAGTGTTTAAAAGTAAAGAAAAATTTGAATATTGTGGTGTTAAACTAAAGATATGCAGAATGTATAGTATTTTGACATGCTACGTGAAAAGTTGGATTGAAGAGTGCCCAAAAAAGGAAGAGAACTTCTTTTGAAACAACAAACAAATTGAAATGGATCTGCATTAAAGATGTTTCATTTGTGGCAGCTAAAGTCAACTTATTGCCTATAACAGATAACTGTACTGACTAAATAAATAATAACTGATAATTTTACCTGAAAGCTGATTCAGTGACCTTTCTTTTGCAGTACTATAGCAAGTGATATGGGAGGAGCACCGTTCGGGTATGTATGTTAGCCTATATCTCTGTAAATTGTTTGGGGAGCTATTTTGTTTGTTTTAAGTTTTGCTTATGGATGGATTGAGATTATCTGATAGTCCTAAAAGTTGACTCTTTTGGAAAGCTTTTCTGCAGTCATGTATTTCCTGATGCTCAGAATTCTCATTTTACTACCAAAAAGGAAAGAAAAAGGTTTCGGGATGTCCTTTATTTAATGTTAACTTCATAAGGGAGGGGTCAACCTGATTGTCATCATGTTATTTGGTATTAGAAATGTATTTGTTTTTGCCATTACTCTTATAGCATACAATTTACAGTATTTCTTTTAGTGCATTCTGAAGCTGCATGATCGTAAGTCAAGTATCACTTTAGGAAAAGGAAATGTCTACATAAGAAAGTGGAATGGTGATAATTTTAATTCAGGTGATAGTTCTTTGTTCGATTTTGAAGGGGTTTGGACTTTGAATTCTTTGAAATCTATCAACATAGAATTTCATGTTTCTTGAACCCCGATAAATTTTAGGACAAGAGATGGAGGATTTGTGGAATGAGATGTTTTATGGATTTGATGCTGTTCAAGCTTGTTTTAGTAGTCTTATCTTGAAGTACTTTCTGTTGTGCAGGAATGTTGTCTCATTTAGTGATGGGTTACCGGACAAAGGCCGTGGTATACCATACTTCTACTTAACAACGCTTGATCCCACTGCTAGAAATGCATTGAAAGACCAGAGATCATCATTTACAATCAGTGAGTACGCCATTGGAACTTGCGGCAAGAAAGATCCTGAGAACCCATCTTGTGCCAAAATTACCCTCGTAGGAAAGGTGGTTGCACTAACAACTCTTCTCCTTTATACAAGAGATTTTATTTAATTTGATGCAGGTGTCTTTTAAACAAGAGTTTTTTGTATCATGCCGAATATTCTGTATCCCACTCTTTCAGGGCATATTTTCACTCCAAAGTTCAGCGTATCCCCCTTAGTTCTACATTTAGAAATGAACAGTAAAAGAGGAAATACTTACAAAGGAGGATAAAAGACCTTAGGGAGAATGGAGCCCCACTTTTTGTTGTGGATTCTATACAAGGATAATGAGGAAGGGGCCCTCTTGCCAAACCTTATAAAAGATAATTAGGGAGACTCATCTACGGATGAGAATCTCTAAGAAAAATTTGAGCTCTGAGATCTTGACACGTAACTGGACATACTAAATGCAAGGTTAGCTAGTAGTAAGCTTGACTTTAATTGGATTTTGATCCAAATATTGATATATTCGAGGTTAGTTTCTCAGATGTTCATGCAATGCATGAGGATATATTATTAAAGTTAATTTTTTCACGCAATACTTGAGGATATAAAAGACATTTCAGGTATTATGGTAATTTGAGTCATCCTGAAACTCAATATTATGCTTGCTCGCAGAAGTTAGAAAGTATACTTGCATATTGCTGCACACATTTAATTCTGAAACAGACTGGTAGTCTGAACTTTCCACTAACTGGTTCCTTGGTAATCATTTGCCCTCAACTTTTCACTATGACACTGTAGTCGGTCTGCATCAATGTAGAAAAGAAAAGAGGAAACTAAAAAACATAATATGGATAATTGGAGAATCTGTTTTCACCATGGTTGTTATCATTATATGTTGTGCTAATTGAAGCAATTACGACGTTGATGGGTTCACTCGTTAAGCATATGAAGTACATGCTGATATGCAAACGTGTGGCTTGGATGTCCAGAAAACTAAGAGTTGATTTGTAGTTCCTTTGTTCTTAAGTGTAAGTATATCGTCCACATTCTTGCTAACATTATCATACTTTGTGTCTGTGCTGTTTTAGTTGAAAGTGGTTGCTGGAGATCCAAAGGAAACTAGCTTTGCTCAAACTGCTTTATTTACAAAACACCCTGAGATGGAAGGTAAATGTCTTGGATCTGCCATTCTAAACTACTACTGTCGTCCTATGTTTACTTTTGTTAACAACAACCCTCACATGTAACTAATGGCAGGTTGGCCCAAGAGTCACGATTTCCAGATATACAAATTAGAGATTGAAGAGATATTTATGATCAATTGGTTTGGTGGTCCCAAACCTCTCACCGTGGATCAGTATTTGCAGGCTAAAATGTAAGTTTAGACTTAAGAGCTGTAAGGAAGTTGCTAAAGAAAAAATCTGATATTGTAGATGCTCAATGAATTGAAAAAATAAATAAAATGTTACTACC</genome_strand>
        <mrna_strand>ACTCCTACATTTGTACAGTAAACATCATGAATATCATCAACAGGGCAGCTTCGATTTTTCTTCTTTTGGTGTTCTTCTTGGCTTTTTTCAAAGATTCTGTTCATGGGCGCCCTCTTTTACTGTCAATGTCCAGACCCAAGCCGGATGATGCTGCCTTATTTGCTCGATGGCTCGTTTCTCAAAATTATTGGGGTGTCCTCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTATAGCAAGTGATATGGGAGGAGCACCGTTCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGTTGTCTCATTTAGTGATGGGTTACCGGACAAAGGCCGTGGTATACCATACTTCTACTTAACAACGCTTGATCCCACTGCTAGAAATGCATTGAAAGACCAGAGATCATCATTTACAATCAGTGAGTACGCCATTGGAACTTGCGGCAAGAAAGATCCTGAGAACCCATCTTGTGCCAAAATTACCCTCGTAGGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAAGTGGTTGCTGGAGATCCAAAGGAAACTAGCTTTGCTCAAACTGCTTTATTTACAAAACACCCTGAGATGGAAG..........................................................................................GTTGGCCCAAGAGTCACGATTTCCAGATATACAAATTAGAGATTGAAGAGATATTTATGATCAATTGGTTTGGTGGTCCCAAACCTCTCACCGTGGATCAGTATTTGCAGGCTAAAATGTAAGTTTAGACTTAAGAGCTGTAAGGAAGTTGCTAAAGAAAAAATCTGATATTGTAGATGCTCAATGAATTGAAAAAATAAATAAAATGTTACTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E609214" ref_strand="+" ref_description="SGN-E609214 [25217]">
      <seq>ccaagattctgttcatgggcgccctcttttactgtcaatgtccagacccaagccggatgatgctgctttatttgctcgatggctcgtttctcagagttcttggggtgttctcaatactatagcaagtgatatgggaggagcaccgttcgggaatgttgtctcatttagtgatgggttaccggacaaaggccgtggtataccatacttctacttaacaacgcttgatcccactgctagaaatgcattgaaagaccagagatcatcatttacaatcagtgagtacgccattggaacttgtggcaagaaagatcctgagaacccatcttgtgccaaaattaccctcgtaggaaagttgaaagtggttactggagatccaaaggaaactagctttgctcaaactgctttattcacaaaacaccctgagatggaaggttggcccaagagtcacgatttccagatatacaaattagagatcgaagagatatttatgatcaattggtttggtggtcccaaacctctcaccgtggatcagtatttgcaggctaaaatgtgagtttaagactttagagcagtaagaaagttgctaaagaaaatgtcagatgttgtagattctcaataata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="75641" stop="72159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75341" g_stop="75228" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75227" i_stop="74686" i_length="542">
            <donor d_prob="0.953" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74685" g_stop="74650" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="150" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74649" i_stop="74031" i_length="619">
            <donor d_prob="0.934" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74030" g_stop="73829" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="352" r_length="202" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73828" i_stop="72817" i_length="1012">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72816" g_stop="72738" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="431" r_length="79" r_score="0.975"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72737" i_stop="72648" i_length="90">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.952" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72647" g_stop="72463" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="617" r_length="186" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E609214" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E609214" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75341" e_stop="75228"/>
          <exon e_start="74685" e_stop="74650"/>
          <exon e_start="74030" e_stop="73829"/>
          <exon e_start="72816" e_stop="72738"/>
          <exon e_start="72647" e_stop="72463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGATTCTGTTCATGGGCGCCCTCTTTTACTGTCAATGTCCAGACCCAAGCCGGATGATGCTGCCTTATTTGCTCGATGGCTCGTTTCTCAGAATTATTGGGGTGTCCTCAAGTATGTAGTAGTTCTCTTTTTTCTAACTGAAAGATCGAATCTTTTACTTCGATTTGTTATTTTTAGTCAACCCCAGTTGGTTTGGGATATTGATTGTTGTTGATTTTGCTTCATAGTTCATGACCTAGACAGATCGAGATTCTTGATTGATTGCTGTAAGTGTAAAGACATAATTTTTCTTGTTTCTTGTGTAGCACAACTTCTCAGTTACTCCTTTTGTTTCAGTTTATTTGTCTAATTTTGACCTTGATATGGAGTGTTTAAAAGTAAAGAAAAATTTGAATATTGTGGTGTTAAACTAAAGATATGCAGAATGTATAGTATTTTGACATGCTACGTGAAAAGTTGGATTGAAGAGTGCCCAAAAAAGGAAGAGAACTTCTTTTGAAACAACAAACAAATTGAAATGGATCTGCATTAAAGATGTTTCATTTGTGGCAGCTAAAGTCAACTTATTGCCTATAACAGATAACTGTACTGACTAAATAAATAATAACTGATAATTTTACCTGAAAGCTGATTCAGTGACCTTTCTTTTGCAGTACTATAGCAAGTGATATGGGAGGAGCACCGTTCGGGTATGTATGTTAGCCTATATCTCTGTAAATTGTTTGGGGAGCTATTTTGTTTGTTTTAAGTTTTGCTTATGGATGGATTGAGATTATCTGATAGTCCTAAAAGTTGACTCTTTTGGAAAGCTTTTCTGCAGTCATGTATTTCCTGATGCTCAGAATTCTCATTTTACTACCAAAAAGGAAAGAAAAAGGTTTCGGGATGTCCTTTATTTAATGTTAACTTCATAAGGGAGGGGTCAACCTGATTGTCATCATGTTATTTGGTATTAGAAATGTATTTGTTTTTGCCATTACTCTTATAGCATACAATTTACAGTATTTCTTTTAGTGCATTCTGAAGCTGCATGATCGTAAGTCAAGTATCACTTTAGGAAAAGGAAATGTCTACATAAGAAAGTGGAATGGTGATAATTTTAATTCAGGTGATAGTTCTTTGTTCGATTTTGAAGGGGTTTGGACTTTGAATTCTTTGAAATCTATCAACATAGAATTTCATGTTTCTTGAACCCCGATAAATTTTAGGACAAGAGATGGAGGATTTGTGGAATGAGATGTTTTATGGATTTGATGCTGTTCAAGCTTGTTTTAGTAGTCTTATCTTGAAGTACTTTCTGTTGTGCAGGAATGTTGTCTCATTTAGTGATGGGTTACCGGACAAAGGCCGTGGTATACCATACTTCTACTTAACAACGCTTGATCCCACTGCTAGAAATGCATTGAAAGACCAGAGATCATCATTTACAATCAGTGAGTACGCCATTGGAACTTGCGGCAAGAAAGATCCTGAGAACCCATCTTGTGCCAAAATTACCCTCGTAGGAAAGGTGGTTGCACTAACAACTCTTCTCCTTTATACAAGAGATTTTATTTAATTTGATGCAGGTGTCTTTTAAACAAGAGTTTTTTGTATCATGCCGAATATTCTGTATCCCACTCTTTCAGGGCATATTTTCACTCCAAAGTTCAGCGTATCCCCCTTAGTTCTACATTTAGAAATGAACAGTAAAAGAGGAAATACTTACAAAGGAGGATAAAAGACCTTAGGGAGAATGGAGCCCCACTTTTTGTTGTGGATTCTATACAAGGATAATGAGGAAGGGGCCCTCTTGCCAAACCTTATAAAAGATAATTAGGGAGACTCATCTACGGATGAGAATCTCTAAGAAAAATTTGAGCTCTGAGATCTTGACACGTAACTGGACATACTAAATGCAAGGTTAGCTAGTAGTAAGCTTGACTTTAATTGGATTTTGATCCAAATATTGATATATTCGAGGTTAGTTTCTCAGATGTTCATGCAATGCATGAGGATATATTATTAAAGTTAATTTTTTCACGCAATACTTGAGGATATAAAAGACATTTCAGGTATTATGGTAATTTGAGTCATCCTGAAACTCAATATTATGCTTGCTCGCAGAAGTTAGAAAGTATACTTGCATATTGCTGCACACATTTAATTCTGAAACAGACTGGTAGTCTGAACTTTCCACTAACTGGTTCCTTGGTAATCATTTGCCCTCAACTTTTCACTATGACACTGTAGTCGGTCTGCATCAATGTAGAAAAGAAAAGAGGAAACTAAAAAACATAATATGGATAATTGGAGAATCTGTTTTCACCATGGTTGTTATCATTATATGTTGTGCTAATTGAAGCAATTACGACGTTGATGGGTTCACTCGTTAAGCATATGAAGTACATGCTGATATGCAAACGTGTGGCTTGGATGTCCAGAAAACTAAGAGTTGATTTGTAGTTCCTTTGTTCTTAAGTGTAAGTATATCGTCCACATTCTTGCTAACATTATCATACTTTGTGTCTGTGCTGTTTTAGTTGAAAGTGGTTGCTGGAGATCCAAAGGAAACTAGCTTTGCTCAAACTGCTTTATTTACAAAACACCCTGAGATGGAAGGTAAATGTCTTGGATCTGCCATTCTAAACTACTACTGTCGTCCTATGTTTACTTTTGTTAACAACAACCCTCACATGTAACTAATGGCAGGTTGGCCCAAGAGTCACGATTTCCAGATATACAAATTAGAGATTGAAGAGATATTTATGATCAATTGGTTTGGTGGTCCCAAACCTCTCACCGTGGATCAGTATTTGCAGGCTAAAATGTAAGTTT-AGACTTAAGAGCTGTAAGGAAGTTGCTAAAGAAAAAATCTGATATTGTAGATGCTCAAT</genome_strand>
        <mrna_strand>CCAAGATTCTGTTCATGGGCGCCCTCTTTTACTGTCAATGTCCAGACCCAAGCCGGATGATGCTGCTTTATTTGCTCGATGGCTCGTTTCTCAGAGTTCTTGGGGTGTTCTCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTATAGCAAGTGATATGGGAGGAGCACCGTTCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGTTGTCTCATTTAGTGATGGGTTACCGGACAAAGGCCGTGGTATACCATACTTCTACTTAACAACGCTTGATCCCACTGCTAGAAATGCATTGAAAGACCAGAGATCATCATTTACAATCAGTGAGTACGCCATTGGAACTTGTGGCAAGAAAGATCCTGAGAACCCATCTTGTGCCAAAATTACCCTCGTAGGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAAGTGGTTACTGGAGATCCAAAGGAAACTAGCTTTGCTCAAACTGCTTTATTCACAAAACACCCTGAGATGGAAG..........................................................................................GTTGGCCCAAGAGTCACGATTTCCAGATATACAAATTAGAGATCGAAGAGATATTTATGATCAATTGGTTTGGTGGTCCCAAACCTCTCACCGTGGATCAGTATTTGCAGGCTAAAATGTGAGTTTAAGACTTTAGAGCAGTAAGAAAGTTGCTAAAGAAAATGTCAGATGTTGTAGATTCTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E393814" ref_strand="+" ref_description="SGN-E393814 [TUS-14-M3]">
      <seq>aataaataccagacagtactctgcaaacactcctacatttgtacagtaaacatcatgaatatcatcaacagggcagcttcgatttttcttcttttggtgttcttcttggcttttttcaaagattctgttcatgggcgccctcttttactgtcaatgtccagacccaagccggatgatgctgccttatttgctcgatggctcgtttctcaaaattattggggtgtcctcaatactatagcaagtgatatgggaggagcaccgttcgggaatgttgtctcatttagtgatgggttaccggacaaaggccgtggtataccatacttctacttaacaacgcttgatcccactgctagaaatgcattgaaagaccagagatcatcatttacaatcagtgagtacgccattggaacttgcggcaagaaagatcctgagaacccatcttgtgccaaaattaccctcgtaggaaagttgaaagtggttgctggagatccaaaggaaactagctttgctcaaactgctttatttacaaaacaccctgagatggaaggttggcccaagagtcacgatttccagatatacaaattaaagattgaaaagatatttatgatcaattgggtttggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="75757" stop="72273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75457" g_stop="75228" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75227" i_stop="74686" i_length="542">
            <donor d_prob="0.953" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74685" g_stop="74650" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="266" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74649" i_stop="74031" i_length="619">
            <donor d_prob="0.934" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74030" g_stop="73829" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="468" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73828" i_stop="72817" i_length="1012">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72816" g_stop="72738" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="547" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72737" i_stop="72648" i_length="90">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72647" g_stop="72573" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="623" r_length="76" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E393814" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75457" e_stop="75228"/>
          <exon e_start="74685" e_stop="74650"/>
          <exon e_start="74030" e_stop="73829"/>
          <exon e_start="72816" e_stop="72738"/>
          <exon e_start="72647" e_stop="72573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAAATACCAGACAGTACTCTGCAAACACTCCTACATTTGTACAGTAAACATCATGAATATCATCAACAGGGCAGCTTCGATTTTTCTTCTTTTGGTGTTCTTCTTGGCTTTTTTCAAAGATTCTGTTCATGGGCGCCCTCTTTTACTGTCAATGTCCAGACCCAAGCCGGATGATGCTGCCTTATTTGCTCGATGGCTCGTTTCTCAGAATTATTGGGGTGTCCTCAAGTATGTAGTAGTTCTCTTTTTTCTAACTGAAAGATCGAATCTTTTACTTCGATTTGTTATTTTTAGTCAACCCCAGTTGGTTTGGGATATTGATTGTTGTTGATTTTGCTTCATAGTTCATGACCTAGACAGATCGAGATTCTTGATTGATTGCTGTAAGTGTAAAGACATAATTTTTCTTGTTTCTTGTGTAGCACAACTTCTCAGTTACTCCTTTTGTTTCAGTTTATTTGTCTAATTTTGACCTTGATATGGAGTGTTTAAAAGTAAAGAAAAATTTGAATATTGTGGTGTTAAACTAAAGATATGCAGAATGTATAGTATTTTGACATGCTACGTGAAAAGTTGGATTGAAGAGTGCCCAAAAAAGGAAGAGAACTTCTTTTGAAACAACAAACAAATTGAAATGGATCTGCATTAAAGATGTTTCATTTGTGGCAGCTAAAGTCAACTTATTGCCTATAACAGATAACTGTACTGACTAAATAAATAATAACTGATAATTTTACCTGAAAGCTGATTCAGTGACCTTTCTTTTGCAGTACTATAGCAAGTGATATGGGAGGAGCACCGTTCGGGTATGTATGTTAGCCTATATCTCTGTAAATTGTTTGGGGAGCTATTTTGTTTGTTTTAAGTTTTGCTTATGGATGGATTGAGATTATCTGATAGTCCTAAAAGTTGACTCTTTTGGAAAGCTTTTCTGCAGTCATGTATTTCCTGATGCTCAGAATTCTCATTTTACTACCAAAAAGGAAAGAAAAAGGTTTCGGGATGTCCTTTATTTAATGTTAACTTCATAAGGGAGGGGTCAACCTGATTGTCATCATGTTATTTGGTATTAGAAATGTATTTGTTTTTGCCATTACTCTTATAGCATACAATTTACAGTATTTCTTTTAGTGCATTCTGAAGCTGCATGATCGTAAGTCAAGTATCACTTTAGGAAAAGGAAATGTCTACATAAGAAAGTGGAATGGTGATAATTTTAATTCAGGTGATAGTTCTTTGTTCGATTTTGAAGGGGTTTGGACTTTGAATTCTTTGAAATCTATCAACATAGAATTTCATGTTTCTTGAACCCCGATAAATTTTAGGACAAGAGATGGAGGATTTGTGGAATGAGATGTTTTATGGATTTGATGCTGTTCAAGCTTGTTTTAGTAGTCTTATCTTGAAGTACTTTCTGTTGTGCAGGAATGTTGTCTCATTTAGTGATGGGTTACCGGACAAAGGCCGTGGTATACCATACTTCTACTTAACAACGCTTGATCCCACTGCTAGAAATGCATTGAAAGACCAGAGATCATCATTTACAATCAGTGAGTACGCCATTGGAACTTGCGGCAAGAAAGATCCTGAGAACCCATCTTGTGCCAAAATTACCCTCGTAGGAAAGGTGGTTGCACTAACAACTCTTCTCCTTTATACAAGAGATTTTATTTAATTTGATGCAGGTGTCTTTTAAACAAGAGTTTTTTGTATCATGCCGAATATTCTGTATCCCACTCTTTCAGGGCATATTTTCACTCCAAAGTTCAGCGTATCCCCCTTAGTTCTACATTTAGAAATGAACAGTAAAAGAGGAAATACTTACAAAGGAGGATAAAAGACCTTAGGGAGAATGGAGCCCCACTTTTTGTTGTGGATTCTATACAAGGATAATGAGGAAGGGGCCCTCTTGCCAAACCTTATAAAAGATAATTAGGGAGACTCATCTACGGATGAGAATCTCTAAGAAAAATTTGAGCTCTGAGATCTTGACACGTAACTGGACATACTAAATGCAAGGTTAGCTAGTAGTAAGCTTGACTTTAATTGGATTTTGATCCAAATATTGATATATTCGAGGTTAGTTTCTCAGATGTTCATGCAATGCATGAGGATATATTATTAAAGTTAATTTTTTCACGCAATACTTGAGGATATAAAAGACATTTCAGGTATTATGGTAATTTGAGTCATCCTGAAACTCAATATTATGCTTGCTCGCAGAAGTTAGAAAGTATACTTGCATATTGCTGCACACATTTAATTCTGAAACAGACTGGTAGTCTGAACTTTCCACTAACTGGTTCCTTGGTAATCATTTGCCCTCAACTTTTCACTATGACACTGTAGTCGGTCTGCATCAATGTAGAAAAGAAAAGAGGAAACTAAAAAACATAATATGGATAATTGGAGAATCTGTTTTCACCATGGTTGTTATCATTATATGTTGTGCTAATTGAAGCAATTACGACGTTGATGGGTTCACTCGTTAAGCATATGAAGTACATGCTGATATGCAAACGTGTGGCTTGGATGTCCAGAAAACTAAGAGTTGATTTGTAGTTCCTTTGTTCTTAAGTGTAAGTATATCGTCCACATTCTTGCTAACATTATCATACTTTGTGTCTGTGCTGTTTTAGTTGAAAGTGGTTGCTGGAGATCCAAAGGAAACTAGCTTTGCTCAAACTGCTTTATTTACAAAACACCCTGAGATGGAAGGTAAATGTCTTGGATCTGCCATTCTAAACTACTACTGTCGTCCTATGTTTACTTTTGTTAACAACAACCCTCACATGTAACTAATGGCAGGTTGGCCCAAGAGTCACGATTTCCAGATATACAAATTAGAGATTGAAGAGATATTTATGATCAATT-GGTTTGGTG</genome_strand>
        <mrna_strand>AATAAATACCAGACAGTACTCTGCAAACACTCCTACATTTGTACAGTAAACATCATGAATATCATCAACAGGGCAGCTTCGATTTTTCTTCTTTTGGTGTTCTTCTTGGCTTTTTTCAAAGATTCTGTTCATGGGCGCCCTCTTTTACTGTCAATGTCCAGACCCAAGCCGGATGATGCTGCCTTATTTGCTCGATGGCTCGTTTCTCAAAATTATTGGGGTGTCCTCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTATAGCAAGTGATATGGGAGGAGCACCGTTCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGTTGTCTCATTTAGTGATGGGTTACCGGACAAAGGCCGTGGTATACCATACTTCTACTTAACAACGCTTGATCCCACTGCTAGAAATGCATTGAAAGACCAGAGATCATCATTTACAATCAGTGAGTACGCCATTGGAACTTGCGGCAAGAAAGATCCTGAGAACCCATCTTGTGCCAAAATTACCCTCGTAGGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAAGTGGTTGCTGGAGATCCAAAGGAAACTAGCTTTGCTCAAACTGCTTTATTTACAAAACACCCTGAGATGGAAG..........................................................................................GTTGGCCCAAGAGTCACGATTTCCAGATATACAAATTAAAGATTGAAAAGATATTTATGATCAATTGGGTTTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E201929" ref_strand="+" ref_description="SGN-E201929 [cLEC-7-G11]">
      <seq>ataaataccagacagtactctgcaaacactcctacatttgtacagtaaacatcatgaatatcatcaacagggcagcttcgatttttcttcttttggtgttcttcttggcttttttcaaagattctgttcatgggcgccctcttttactgtcaatgtccagacccaagccggatgatgctgccttatttgctcgatggctcgtttctcagaattattggggtgtcctcaatactatagcaagtgatatgggaggagcaccgttcgggaatgttgtctcatttagtgatgggttaccggacaaaggccgtggtataccatacttctacttaacaacgcttgatcccactgctagaaatgcattgaaagaccagagatcatcatttacaatcagtgagtacgccattggaacttgcggcaagaaagatcctgagaacccatcttgtgccaaaattaccctcgtaggaaagttgaaagtggttgctggagatccaaaggaaactagctttgctcaaactgctttatttacaaaacaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="75756" stop="72449"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75456" g_stop="75228" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75227" i_stop="74686" i_length="542">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74685" g_stop="74650" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="265" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74649" i_stop="74031" i_length="619">
            <donor d_prob="0.934" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74030" g_stop="73829" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="467" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73828" i_stop="72817" i_length="1012">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72816" g_stop="72749" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="535" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E201929" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201929" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75456" e_stop="75228"/>
          <exon e_start="74685" e_stop="74650"/>
          <exon e_start="74030" e_stop="73829"/>
          <exon e_start="72816" e_stop="72749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAATACCAGACAGTACTCTGCAAACACTCCTACATTTGTACAGTAAACATCATGAATATCATCAACAGGGCAGCTTCGATTTTTCTTCTTTTGGTGTTCTTCTTGGCTTTTTTCAAAGATTCTGTTCATGGGCGCCCTCTTTTACTGTCAATGTCCAGACCCAAGCCGGATGATGCTGCCTTATTTGCTCGATGGCTCGTTTCTCAGAATTATTGGGGTGTCCTCAAGTATGTAGTAGTTCTCTTTTTTCTAACTGAAAGATCGAATCTTTTACTTCGATTTGTTATTTTTAGTCAACCCCAGTTGGTTTGGGATATTGATTGTTGTTGATTTTGCTTCATAGTTCATGACCTAGACAGATCGAGATTCTTGATTGATTGCTGTAAGTGTAAAGACATAATTTTTCTTGTTTCTTGTGTAGCACAACTTCTCAGTTACTCCTTTTGTTTCAGTTTATTTGTCTAATTTTGACCTTGATATGGAGTGTTTAAAAGTAAAGAAAAATTTGAATATTGTGGTGTTAAACTAAAGATATGCAGAATGTATAGTATTTTGACATGCTACGTGAAAAGTTGGATTGAAGAGTGCCCAAAAAAGGAAGAGAACTTCTTTTGAAACAACAAACAAATTGAAATGGATCTGCATTAAAGATGTTTCATTTGTGGCAGCTAAAGTCAACTTATTGCCTATAACAGATAACTGTACTGACTAAATAAATAATAACTGATAATTTTACCTGAAAGCTGATTCAGTGACCTTTCTTTTGCAGTACTATAGCAAGTGATATGGGAGGAGCACCGTTCGGGTATGTATGTTAGCCTATATCTCTGTAAATTGTTTGGGGAGCTATTTTGTTTGTTTTAAGTTTTGCTTATGGATGGATTGAGATTATCTGATAGTCCTAAAAGTTGACTCTTTTGGAAAGCTTTTCTGCAGTCATGTATTTCCTGATGCTCAGAATTCTCATTTTACTACCAAAAAGGAAAGAAAAAGGTTTCGGGATGTCCTTTATTTAATGTTAACTTCATAAGGGAGGGGTCAACCTGATTGTCATCATGTTATTTGGTATTAGAAATGTATTTGTTTTTGCCATTACTCTTATAGCATACAATTTACAGTATTTCTTTTAGTGCATTCTGAAGCTGCATGATCGTAAGTCAAGTATCACTTTAGGAAAAGGAAATGTCTACATAAGAAAGTGGAATGGTGATAATTTTAATTCAGGTGATAGTTCTTTGTTCGATTTTGAAGGGGTTTGGACTTTGAATTCTTTGAAATCTATCAACATAGAATTTCATGTTTCTTGAACCCCGATAAATTTTAGGACAAGAGATGGAGGATTTGTGGAATGAGATGTTTTATGGATTTGATGCTGTTCAAGCTTGTTTTAGTAGTCTTATCTTGAAGTACTTTCTGTTGTGCAGGAATGTTGTCTCATTTAGTGATGGGTTACCGGACAAAGGCCGTGGTATACCATACTTCTACTTAACAACGCTTGATCCCACTGCTAGAAATGCATTGAAAGACCAGAGATCATCATTTACAATCAGTGAGTACGCCATTGGAACTTGCGGCAAGAAAGATCCTGAGAACCCATCTTGTGCCAAAATTACCCTCGTAGGAAAGGTGGTTGCACTAACAACTCTTCTCCTTTATACAAGAGATTTTATTTAATTTGATGCAGGTGTCTTTTAAACAAGAGTTTTTTGTATCATGCCGAATATTCTGTATCCCACTCTTTCAGGGCATATTTTCACTCCAAAGTTCAGCGTATCCCCCTTAGTTCTACATTTAGAAATGAACAGTAAAAGAGGAAATACTTACAAAGGAGGATAAAAGACCTTAGGGAGAATGGAGCCCCACTTTTTGTTGTGGATTCTATACAAGGATAATGAGGAAGGGGCCCTCTTGCCAAACCTTATAAAAGATAATTAGGGAGACTCATCTACGGATGAGAATCTCTAAGAAAAATTTGAGCTCTGAGATCTTGACACGTAACTGGACATACTAAATGCAAGGTTAGCTAGTAGTAAGCTTGACTTTAATTGGATTTTGATCCAAATATTGATATATTCGAGGTTAGTTTCTCAGATGTTCATGCAATGCATGAGGATATATTATTAAAGTTAATTTTTTCACGCAATACTTGAGGATATAAAAGACATTTCAGGTATTATGGTAATTTGAGTCATCCTGAAACTCAATATTATGCTTGCTCGCAGAAGTTAGAAAGTATACTTGCATATTGCTGCACACATTTAATTCTGAAACAGACTGGTAGTCTGAACTTTCCACTAACTGGTTCCTTGGTAATCATTTGCCCTCAACTTTTCACTATGACACTGTAGTCGGTCTGCATCAATGTAGAAAAGAAAAGAGGAAACTAAAAAACATAATATGGATAATTGGAGAATCTGTTTTCACCATGGTTGTTATCATTATATGTTGTGCTAATTGAAGCAATTACGACGTTGATGGGTTCACTCGTTAAGCATATGAAGTACATGCTGATATGCAAACGTGTGGCTTGGATGTCCAGAAAACTAAGAGTTGATTTGTAGTTCCTTTGTTCTTAAGTGTAAGTATATCGTCCACATTCTTGCTAACATTATCATACTTTGTGTCTGTGCTGTTTTAGTTGAAAGTGGTTGCTGGAGATCCAAAGGAAACTAGCTTTGCTCAAACTGCTTTATTTACAAAACACCC</genome_strand>
        <mrna_strand>ATAAATACCAGACAGTACTCTGCAAACACTCCTACATTTGTACAGTAAACATCATGAATATCATCAACAGGGCAGCTTCGATTTTTCTTCTTTTGGTGTTCTTCTTGGCTTTTTTCAAAGATTCTGTTCATGGGCGCCCTCTTTTACTGTCAATGTCCAGACCCAAGCCGGATGATGCTGCCTTATTTGCTCGATGGCTCGTTTCTCAGAATTATTGGGGTGTCCTCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTATAGCAAGTGATATGGGAGGAGCACCGTTCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGTTGTCTCATTTAGTGATGGGTTACCGGACAAAGGCCGTGGTATACCATACTTCTACTTAACAACGCTTGATCCCACTGCTAGAAATGCATTGAAAGACCAGAGATCATCATTTACAATCAGTGAGTACGCCATTGGAACTTGCGGCAAGAAAGATCCTGAGAACCCATCTTGTGCCAAAATTACCCTCGTAGGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAAGTGGTTGCTGGAGATCCAAAGGAAACTAGCTTTGCTCAAACTGCTTTATTTACAAAACACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E314375" ref_strand="+" ref_description="SGN-E314375 [cTOA-21-M7]">
      <seq>tacagtaaacatcatgaatatcatcaacagggcagcttcgatttttcttcttttggtgttcttcttggcttttttcaaagattctgttcatgggcgccctcttttactgtcaatgtccagacccaagccggatgatgctgccttatttgctcgatggctcgtttctcagaattattggggtgtcctcaatactatagcaagtgatatgggaggagcaccgttcgggaatgttgtctcatttagtgatgggttaccggacaaaggccgtggtataccatacttctacttaacaacgcttgatcccactgctagaaatgcattgaaagaccagagatcatcatttacaatcagtgagtacgccattggaacttgcggcaagaaagatcctgagaacccatcttgtgccaaaattaccctcgtaggaaaggtggttgcactaacaactcttctcctttatacaagagattttatttaatttgatgcangtgtcttttaaacaagagttttttgtatcatgccgaatattctgtatcccactctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="75716" stop="73415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75416" g_stop="75228" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75227" i_stop="74686" i_length="542">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74685" g_stop="74650" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="225" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74649" i_stop="74031" i_length="619">
            <donor d_prob="0.934" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74030" g_stop="73715" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="541" r_length="316" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E314375" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75416" e_stop="75228"/>
          <exon e_start="74685" e_stop="74650"/>
          <exon e_start="74030" e_stop="73715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAGTAAACATCATGAATATCATCAACAGGGCAGCTTCGATTTTTCTTCTTTTGGTGTTCTTCTTGGCTTTTTTCAAAGATTCTGTTCATGGGCGCCCTCTTTTACTGTCAATGTCCAGACCCAAGCCGGATGATGCTGCCTTATTTGCTCGATGGCTCGTTTCTCAGAATTATTGGGGTGTCCTCAAGTATGTAGTAGTTCTCTTTTTTCTAACTGAAAGATCGAATCTTTTACTTCGATTTGTTATTTTTAGTCAACCCCAGTTGGTTTGGGATATTGATTGTTGTTGATTTTGCTTCATAGTTCATGACCTAGACAGATCGAGATTCTTGATTGATTGCTGTAAGTGTAAAGACATAATTTTTCTTGTTTCTTGTGTAGCACAACTTCTCAGTTACTCCTTTTGTTTCAGTTTATTTGTCTAATTTTGACCTTGATATGGAGTGTTTAAAAGTAAAGAAAAATTTGAATATTGTGGTGTTAAACTAAAGATATGCAGAATGTATAGTATTTTGACATGCTACGTGAAAAGTTGGATTGAAGAGTGCCCAAAAAAGGAAGAGAACTTCTTTTGAAACAACAAACAAATTGAAATGGATCTGCATTAAAGATGTTTCATTTGTGGCAGCTAAAGTCAACTTATTGCCTATAACAGATAACTGTACTGACTAAATAAATAATAACTGATAATTTTACCTGAAAGCTGATTCAGTGACCTTTCTTTTGCAGTACTATAGCAAGTGATATGGGAGGAGCACCGTTCGGGTATGTATGTTAGCCTATATCTCTGTAAATTGTTTGGGGAGCTATTTTGTTTGTTTTAAGTTTTGCTTATGGATGGATTGAGATTATCTGATAGTCCTAAAAGTTGACTCTTTTGGAAAGCTTTTCTGCAGTCATGTATTTCCTGATGCTCAGAATTCTCATTTTACTACCAAAAAGGAAAGAAAAAGGTTTCGGGATGTCCTTTATTTAATGTTAACTTCATAAGGGAGGGGTCAACCTGATTGTCATCATGTTATTTGGTATTAGAAATGTATTTGTTTTTGCCATTACTCTTATAGCATACAATTTACAGTATTTCTTTTAGTGCATTCTGAAGCTGCATGATCGTAAGTCAAGTATCACTTTAGGAAAAGGAAATGTCTACATAAGAAAGTGGAATGGTGATAATTTTAATTCAGGTGATAGTTCTTTGTTCGATTTTGAAGGGGTTTGGACTTTGAATTCTTTGAAATCTATCAACATAGAATTTCATGTTTCTTGAACCCCGATAAATTTTAGGACAAGAGATGGAGGATTTGTGGAATGAGATGTTTTATGGATTTGATGCTGTTCAAGCTTGTTTTAGTAGTCTTATCTTGAAGTACTTTCTGTTGTGCAGGAATGTTGTCTCATTTAGTGATGGGTTACCGGACAAAGGCCGTGGTATACCATACTTCTACTTAACAACGCTTGATCCCACTGCTAGAAATGCATTGAAAGACCAGAGATCATCATTTACAATCAGTGAGTACGCCATTGGAACTTGCGGCAAGAAAGATCCTGAGAACCCATCTTGTGCCAAAATTACCCTCGTAGGAAAGGTGGTTGCACTAACAACTCTTCTCCTTTATACAAGAGATTTTATTTAATTTGATGCAGGTGTCTTTTAAACAAGAGTTTTTTGTATCATGCCGAATATTCTGTATCCCACTCTT</genome_strand>
        <mrna_strand>TACAGTAAACATCATGAATATCATCAACAGGGCAGCTTCGATTTTTCTTCTTTTGGTGTTCTTCTTGGCTTTTTTCAAAGATTCTGTTCATGGGCGCCCTCTTTTACTGTCAATGTCCAGACCCAAGCCGGATGATGCTGCCTTATTTGCTCGATGGCTCGTTTCTCAGAATTATTGGGGTGTCCTCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTATAGCAAGTGATATGGGAGGAGCACCGTTCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGTTGTCTCATTTAGTGATGGGTTACCGGACAAAGGCCGTGGTATACCATACTTCTACTTAACAACGCTTGATCCCACTGCTAGAAATGCATTGAAAGACCAGAGATCATCATTTACAATCAGTGAGTACGCCATTGGAACTTGCGGCAAGAAAGATCCTGAGAACCCATCTTGTGCCAAAATTACCCTCGTAGGAAAGGTGGTTGCACTAACAACTCTTCTCCTTTATACAAGAGATTTTATTTAATTTGATGCANGTGTCTTTTAAACAAGAGTTTTTTGTATCATGCCGAATATTCTGTATCCCACTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E745200" ref_strand="+" ref_description="SGN-E745200 [GI|47105846]">
      <seq>ggtaagaaggaagggaaaaagaaaggagtatatgagtcttggaaagtcaggtgagcagaaaattgagcctaaataggcaggcacagcctggccagatcaacgaagcttctctataacatagaatttcttgagatctaacgataatcaaagtcaacaatggggctattcagctatactgtcgccggcggcggatttatactaatcggcgcttgggaatctctggtctcttcttctggtgccctgaaaaattcatcaccgtcgtccactacccaatcgccgccacaaaatccatcgacagataagcatgagcaagattctgttttttcttcatcggtcacctttgtattaatcttaatcctttcgttccttttcgttctcgattccttgttatcctttttcgacgcactcaactccaaagacaacattggttccgtccttcaattgcaggttatcgcgatttctcttcttttctttctctattcggtattaggtctcatgacccgcttgaaaagttcttttcatttaccttcaccgatcctcaatttgctttgcctcttcgcttttgctgaggaatttttgttgttttatcttcaaaggaaagacccaagtggagttgaaaatcgttactataatctcttgcttgtgcctattgctatttgtgcattttgttcatttctagaattgaaaaatcccaaatcaaattacactagattaggacgtgggattgggttaatcttgcaagggacgtggactcttcaaatggggtttgcttttttctccgatttgattgcacagggatgctatttacatcaaaggagtagaggtaattacacggttaagtgtaaaggtcatcctcagtaccatcgaggtggagctattgctacccttcagttcaattgccaccttgctcttcttgtgactgtgattacttttgtatactcaattgtgtgtaaaaaacatggcattggccgtgaacatatgcggtatagacctattggagctgagatgcaacacttggaaatcgatagtcaagctcattttacattggagtctgatgaagaggatgacaatgagaatgggataaaagaagagatgaatgttgaaatgcaaaaggctattgtacctgttcctgaatcagaaactaatggctatcatacccatccttgaggaaacccatggttcattttttatgttactgggtataaagatatattctttgcagaggggttatggtttagaggttggggttccctttgtataaagaatttacatatagaaaagagaaagtttcagtctttttgtatttgatgattctagttcaaattgtaatgttgtcttagaaattttctttgaagtgatttaagtatattttcctttattgtgtgtctatggaagacttactctttgatagtaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="91749" stop="93771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92048" g_stop="93460" g_length="1413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1413" r_length="1413" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1414" polyA_stop="1436"/>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E745200" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1413</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92048" e_stop="93460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAAGAAGGAAGGGAAAAAGAAAGGAGTATATGAGTCTTGGAAAGTCAGGTGAGCAGAAAATTGAGCCTAAATAGGCAGGCACAGCCTGGCCAGATCAACGAAGCTTCTCTATAACATAGAATTTCTTGAGATCTAACGATAATCAAAGTCAACAATGGGGCTATTCAGCTATACTGTCGCCGGCGGCGGATTTATACTAATCGGCGCTTGGGAATCTCTGGTCTCTTCTTCTGGTGCCCTGAAAAATTCATCACCGTCGTCCACTACCCAATCGCCGCCACAAAATCCATCGACAGATAAGCATGAGCAAGATTCTGTTTTTTCTTCATCGGTCACCTTTGTATTAATCTTAATCCTTTCGTTCCTTTTCGTTCTCGATTCCTTGTTATCCTTTTTCGACGCACTCAACTCCAAAGACAACATTGGTTCCGTCCTTCAATTGCAGGTTATCGCGATTTCTCTTCTTTTCTTTCTCTATTCGGTATTAGGTCTCATGACCCGCTTGAAAAGTTCTTTTCATTTACCTTCACCGATCCTCAATTTGCTTTGCCTCTTCGCTTTTGCTGAGGAATTTTTGTTGTTTTATCTTCAAAGGAAAGACCCAAGTGGAGTTGAAAATCGTTACTATAATCTCTTGCTTGTGCCTATTGCTATTTGTGCATTTTGTTCATTTCTAGAATTGAAAAATCCCAAATCAAATTACACTAGATTAGGACGTGGGATTGGGTTAATCTTGCAAGGGACGTGGACTCTTCAAATGGGGTTTGCTTTTTTCTCCGATTTGATTGCACAGGGATGCTATTTACATCAAAGGAGTAGAGGTAATTACACGGTTAAGTGTAAAGGTCATCCTCAGTACCATCGAGGTGGAGCTATTGCTACCCTTCAGTTCAATTGCCACCTTGCTCTTCTTGTGACTGTGATTACTTTTGTATACTCAATTGTGTGTAAAAAACATGGCATTGGCCGTGAACATATGCGGTATAGACCTATTGGAGCTGAGATGCAACACTTGGAAATCGATAGTCAAGCTCATTTTACATTGGAGTCTGATGAAGAGGATGACAATGAGAATGGGATAAAAGAAGAGATGAATGTTGAAATGCAAAAGGCTATTGTACCTGTTCCTGAATCAGAAACTAATGGCTATCATACCCATCCTTGAGGAAACCCATGGTTCATTTTTTATGTTACTGGGTATAAAGATATATTCTTTGCAGAGGGGTTATGGTTTAGAGGTTGGGGTTCCCTTTGTATAAAGAATTTACATATAGAAAAGAGAAAGTTTCAGTCTTTTTGTATTTGATGATTCTAGTTCAAATTGTAATGTTGTCTTAGAAATTTTCTTTGAAGTGATTTAAGTATATTTTCCTTTATTGTGTGTCTATGGAAGACTTACTCTTTGATAGTA</genome_strand>
        <mrna_strand>GGTAAGAAGGAAGGGAAAAAGAAAGGAGTATATGAGTCTTGGAAAGTCAGGTGAGCAGAAAATTGAGCCTAAATAGGCAGGCACAGCCTGGCCAGATCAACGAAGCTTCTCTATAACATAGAATTTCTTGAGATCTAACGATAATCAAAGTCAACAATGGGGCTATTCAGCTATACTGTCGCCGGCGGCGGATTTATACTAATCGGCGCTTGGGAATCTCTGGTCTCTTCTTCTGGTGCCCTGAAAAATTCATCACCGTCGTCCACTACCCAATCGCCGCCACAAAATCCATCGACAGATAAGCATGAGCAAGATTCTGTTTTTTCTTCATCGGTCACCTTTGTATTAATCTTAATCCTTTCGTTCCTTTTCGTTCTCGATTCCTTGTTATCCTTTTTCGACGCACTCAACTCCAAAGACAACATTGGTTCCGTCCTTCAATTGCAGGTTATCGCGATTTCTCTTCTTTTCTTTCTCTATTCGGTATTAGGTCTCATGACCCGCTTGAAAAGTTCTTTTCATTTACCTTCACCGATCCTCAATTTGCTTTGCCTCTTCGCTTTTGCTGAGGAATTTTTGTTGTTTTATCTTCAAAGGAAAGACCCAAGTGGAGTTGAAAATCGTTACTATAATCTCTTGCTTGTGCCTATTGCTATTTGTGCATTTTGTTCATTTCTAGAATTGAAAAATCCCAAATCAAATTACACTAGATTAGGACGTGGGATTGGGTTAATCTTGCAAGGGACGTGGACTCTTCAAATGGGGTTTGCTTTTTTCTCCGATTTGATTGCACAGGGATGCTATTTACATCAAAGGAGTAGAGGTAATTACACGGTTAAGTGTAAAGGTCATCCTCAGTACCATCGAGGTGGAGCTATTGCTACCCTTCAGTTCAATTGCCACCTTGCTCTTCTTGTGACTGTGATTACTTTTGTATACTCAATTGTGTGTAAAAAACATGGCATTGGCCGTGAACATATGCGGTATAGACCTATTGGAGCTGAGATGCAACACTTGGAAATCGATAGTCAAGCTCATTTTACATTGGAGTCTGATGAAGAGGATGACAATGAGAATGGGATAAAAGAAGAGATGAATGTTGAAATGCAAAAGGCTATTGTACCTGTTCCTGAATCAGAAACTAATGGCTATCATACCCATCCTTGAGGAAACCCATGGTTCATTTTTTATGTTACTGGGTATAAAGATATATTCTTTGCAGAGGGGTTATGGTTTAGAGGTTGGGGTTCCCTTTGTATAAAGAATTTACATATAGAAAAGAGAAAGTTTCAGTCTTTTTGTATTTGATGATTCTAGTTCAAATTGTAATGTTGTCTTAGAAATTTTCTTTGAAGTGATTTAAGTATATTTTCCTTTATTGTGTGTCTATGGAAGACTTACTCTTTGATAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E330521" ref_strand="+" ref_description="SGN-E330521 [cTOD-8-A13]">
      <seq>aagaaaggagtatatgagtcttggaaagtcaggtgagcagagaattgagcctaaataggcaggcacagcctggccagatcaacgaagcttctctataacatagaatttcttgagatctaacgataatcaaagtcaacaatggggctattcagctatactgtcgccggcggcggatttatactaatcggcgcttgggaatctctggtctcttcttctggtgccctgaaaaattcatcaccgtcgtccactacccaatcgccgccacaaaatccatcgacagataagcatgagcaagattctgttttttcttcatcggtcacctttgtattaatcttaatcctttcgttccttttcgttctcgattccttgttatcctttttcgacgcactcaactccaaagacaacattggttccgtccttcaattgcaggttatcgcgatttctcttcttttctttctcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="91766" stop="92826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92066" g_stop="92526" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E330521" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92066" e_stop="92526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAGGAGTATATGAGTCTTGGAAAGTCAGGTGAGCAGAAAATTGAGCCTAAATAGGCAGGCACAGCCTGGCCAGATCAACGAAGCTTCTCTATAACATAGAATTTCTTGAGATCTAACGATAATCAAAGTCAACAATGGGGCTATTCAGCTATACTGTCGCCGGCGGCGGATTTATACTAATCGGCGCTTGGGAATCTCTGGTCTCTTCTTCTGGTGCCCTGAAAAATTCATCACCGTCGTCCACTACCCAATCGCCGCCACAAAATCCATCGACAGATAAGCATGAGCAAGATTCTGTTTTTTCTTCATCGGTCACCTTTGTATTAATCTTAATCCTTTCGTTCCTTTTCGTTCTCGATTCCTTGTTATCCTTTTTCGACGCACTCAACTCCAAAGACAACATTGGTTCCGTCCTTCAATTGCAGGTTATCGCGATTTCTCTTCTTTTCTTTCTCTA</genome_strand>
        <mrna_strand>AAGAAAGGAGTATATGAGTCTTGGAAAGTCAGGTGAGCAGAGAATTGAGCCTAAATAGGCAGGCACAGCCTGGCCAGATCAACGAAGCTTCTCTATAACATAGAATTTCTTGAGATCTAACGATAATCAAAGTCAACAATGGGGCTATTCAGCTATACTGTCGCCGGCGGCGGATTTATACTAATCGGCGCTTGGGAATCTCTGGTCTCTTCTTCTGGTGCCCTGAAAAATTCATCACCGTCGTCCACTACCCAATCGCCGCCACAAAATCCATCGACAGATAAGCATGAGCAAGATTCTGTTTTTTCTTCATCGGTCACCTTTGTATTAATCTTAATCCTTTCGTTCCTTTTCGTTCTCGATTCCTTGTTATCCTTTTTCGACGCACTCAACTCCAAAGACAACATTGGTTCCGTCCTTCAATTGCAGGTTATCGCGATTTCTCTTCTTTTCTTTCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E332260" ref_strand="+" ref_description="SGN-E332260 [cTOD-17-G24]">
      <seq>aggcacagcctggccagatcaacgaagcttctctataacatagaatttcttgagatctaacgataatcaaagtcaacaatggggctattcagctatactgtcgccggcggcggatttatactaatcggcgcttgggaatctctggtctcttcttctggtgccctgaaaaattcatcaccgtcgtccactacccaatcgccgccacaaaatccatcgacagataagcatgagcaagattctgttttttcttcatcggtcacctttgtattaatcttaatcctttcgttccttttcgttctcgattccttgttatcctttttcgacgcactcaactccaaagacaacattggttccgtccttcaattgcaggttatcgcgatttctcttcttttctttctctattcggtattaggtctcatgacccgcttgaaaagttcttttcatttaccttcaccgatcctcaatttgctttgcctcttcgcttttgctgaggaatttttgttgttttatcttcaaaggaaagacccaagtggagttgaaaatcgttactataatctcttgcttgtgcctattgctatttgtgcattttgttcatttctagaattgaaaaatcccaaatcaaattacactagattaggacgtgggattgggttaatcttgcaagggacgtggactcttcaaatggggtttgcttttttctccgatttgattgcacagggatgctatttacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="91826" stop="93158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92126" g_stop="92858" g_length="733"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="733" r_length="733" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E332260" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92126" e_stop="92858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCACAGCCTGGCCAGATCAACGAAGCTTCTCTATAACATAGAATTTCTTGAGATCTAACGATAATCAAAGTCAACAATGGGGCTATTCAGCTATACTGTCGCCGGCGGCGGATTTATACTAATCGGCGCTTGGGAATCTCTGGTCTCTTCTTCTGGTGCCCTGAAAAATTCATCACCGTCGTCCACTACCCAATCGCCGCCACAAAATCCATCGACAGATAAGCATGAGCAAGATTCTGTTTTTTCTTCATCGGTCACCTTTGTATTAATCTTAATCCTTTCGTTCCTTTTCGTTCTCGATTCCTTGTTATCCTTTTTCGACGCACTCAACTCCAAAGACAACATTGGTTCCGTCCTTCAATTGCAGGTTATCGCGATTTCTCTTCTTTTCTTTCTCTATTCGGTATTAGGTCTCATGACCCGCTTGAAAAGTTCTTTTCATTTACCTTCACCGATCCTCAATTTGCTTTGCCTCTTCGCTTTTGCTGAGGAATTTTTGTTGTTTTATCTTCAAAGGAAAGACCCAAGTGGAGTTGAAAATCGTTACTATAATCTCTTGCTTGTGCCTATTGCTATTTGTGCATTTTGTTCATTTCTAGAATTGAAAAATCCCAAATCAAATTACACTAGATTAGGACGTGGGATTGGGTTAATCTTGCAAGGGACGTGGACTCTTCAAATGGGGTTTGCTTTTTTCTCCGATTTGATTGCACAGGGATGCTATTTACATC</genome_strand>
        <mrna_strand>AGGCACAGCCTGGCCAGATCAACGAAGCTTCTCTATAACATAGAATTTCTTGAGATCTAACGATAATCAAAGTCAACAATGGGGCTATTCAGCTATACTGTCGCCGGCGGCGGATTTATACTAATCGGCGCTTGGGAATCTCTGGTCTCTTCTTCTGGTGCCCTGAAAAATTCATCACCGTCGTCCACTACCCAATCGCCGCCACAAAATCCATCGACAGATAAGCATGAGCAAGATTCTGTTTTTTCTTCATCGGTCACCTTTGTATTAATCTTAATCCTTTCGTTCCTTTTCGTTCTCGATTCCTTGTTATCCTTTTTCGACGCACTCAACTCCAAAGACAACATTGGTTCCGTCCTTCAATTGCAGGTTATCGCGATTTCTCTTCTTTTCTTTCTCTATTCGGTATTAGGTCTCATGACCCGCTTGAAAAGTTCTTTTCATTTACCTTCACCGATCCTCAATTTGCTTTGCCTCTTCGCTTTTGCTGAGGAATTTTTGTTGTTTTATCTTCAAAGGAAAGACCCAAGTGGAGTTGAAAATCGTTACTATAATCTCTTGCTTGTGCCTATTGCTATTTGTGCATTTTGTTCATTTCTAGAATTGAAAAATCCCAAATCAAATTACACTAGATTAGGACGTGGGATTGGGTTAATCTTGCAAGGGACGTGGACTCTTCAAATGGGGTTTGCTTTTTTCTCCGATTTGATTGCACAGGGATGCTATTTACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E268386" ref_strand="+" ref_description="SGN-E268386 [cLEI-13-M14]">
      <seq>agcctggccagatcaacgaagcttctctataacatagaatttcttgagatctaacgataatcaaagtcaacaatggggctattcagctatactgtcgccggcggcggatttatactaatcggcgcttgggaatctctggtctcttcttctggtgccctgaaaaattcatcaccgtcgtccactacccaatcgccgccacaaaatccatcgacagataagcatgagcaagattctgttttttcttcatcggtcacctttgtattaatcttaatcctttcgttccttttcgttctcgattccttgttatcctttttcgacgcactcaactccaaagacaacattggttccgtccttcaattgcaggttatcgcgatttctcttcttttctttctctattcggtattaggtctcatgacccgcttgaaaagttcttttcatttaccttcaccgatcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="91832" stop="92887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92132" g_stop="92587" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="456" r_length="456" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E268386" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92132" e_stop="92587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCTGGCCAGATCAACGAAGCTTCTCTATAACATAGAATTTCTTGAGATCTAACGATAATCAAAGTCAACAATGGGGCTATTCAGCTATACTGTCGCCGGCGGCGGATTTATACTAATCGGCGCTTGGGAATCTCTGGTCTCTTCTTCTGGTGCCCTGAAAAATTCATCACCGTCGTCCACTACCCAATCGCCGCCACAAAATCCATCGACAGATAAGCATGAGCAAGATTCTGTTTTTTCTTCATCGGTCACCTTTGTATTAATCTTAATCCTTTCGTTCCTTTTCGTTCTCGATTCCTTGTTATCCTTTTTCGACGCACTCAACTCCAAAGACAACATTGGTTCCGTCCTTCAATTGCAGGTTATCGCGATTTCTCTTCTTTTCTTTCTCTATTCGGTATTAGGTCTCATGACCCGCTTGAAAAGTTCTTTTCATTTACCTTCACCGATCCTC</genome_strand>
        <mrna_strand>AGCCTGGCCAGATCAACGAAGCTTCTCTATAACATAGAATTTCTTGAGATCTAACGATAATCAAAGTCAACAATGGGGCTATTCAGCTATACTGTCGCCGGCGGCGGATTTATACTAATCGGCGCTTGGGAATCTCTGGTCTCTTCTTCTGGTGCCCTGAAAAATTCATCACCGTCGTCCACTACCCAATCGCCGCCACAAAATCCATCGACAGATAAGCATGAGCAAGATTCTGTTTTTTCTTCATCGGTCACCTTTGTATTAATCTTAATCCTTTCGTTCCTTTTCGTTCTCGATTCCTTGTTATCCTTTTTCGACGCACTCAACTCCAAAGACAACATTGGTTCCGTCCTTCAATTGCAGGTTATCGCGATTTCTCTTCTTTTCTTTCTCTATTCGGTATTAGGTCTCATGACCCGCTTGAAAAGTTCTTTTCATTTACCTTCACCGATCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E302822" ref_strand="+" ref_description="SGN-E302822 [cLEY-2-O7]">
      <seq>atttcttgagatctaacgataatcaaagtcaacaatggggctattcagctatactgtcgccggcggcggatttatactaatcggcgcttgggaatctctggtctcttcttctggtgccctgaaaaattcatcaccgtcgtccactacccaatcgccgccacaaaatccatcgacagataagcatgagcaagattctgttttttcttcatcggtcacctttgtattaatcttaatcctttcgttccttttcgttctcgattccttgttatcctttttcgacgcactcaactccaaagacaacattggttccgtccttcaattgcaggttatcgcgaattctcttcttttctttctctattcgggattaggtctcatgacccgcttgaaaagatcttttcatttaccttcaccgatcctcaatttgctttgcctcttcgcttttgctgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="91870" stop="92917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92170" g_stop="92617" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E302822" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302822" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92170" e_stop="92617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTTGAGATCTAACGATAATCAAAGTCAACAATGGGGCTATTCAGCTATACTGTCGCCGGCGGCGGATTTATACTAATCGGCGCTTGGGAATCTCTGGTCTCTTCTTCTGGTGCCCTGAAAAATTCATCACCGTCGTCCACTACCCAATCGCCGCCACAAAATCCATCGACAGATAAGCATGAGCAAGATTCTGTTTTTTCTTCATCGGTCACCTTTGTATTAATCTTAATCCTTTCGTTCCTTTTCGTTCTCGATTCCTTGTTATCCTTTTTCGACGCACTCAACTCCAAAGACAACATTGGTTCCGTCCTTCAATTGCAGGTTATCGCGATTTCTCTTCTTTTCTTTCTCTATTCGGTATTAGGTCTCATGACCCGCTTGAAAAGTTCTTTTCATTTACCTTCACCGATCCTCAATTTGCTTTGCCTCTTCGCTTTTGCTGAG</genome_strand>
        <mrna_strand>ATTTCTTGAGATCTAACGATAATCAAAGTCAACAATGGGGCTATTCAGCTATACTGTCGCCGGCGGCGGATTTATACTAATCGGCGCTTGGGAATCTCTGGTCTCTTCTTCTGGTGCCCTGAAAAATTCATCACCGTCGTCCACTACCCAATCGCCGCCACAAAATCCATCGACAGATAAGCATGAGCAAGATTCTGTTTTTTCTTCATCGGTCACCTTTGTATTAATCTTAATCCTTTCGTTCCTTTTCGTTCTCGATTCCTTGTTATCCTTTTTCGACGCACTCAACTCCAAAGACAACATTGGTTCCGTCCTTCAATTGCAGGTTATCGCGAATTCTCTTCTTTTCTTTCTCTATTCGGGATTAGGTCTCATGACCCGCTTGAAAAGATCTTTTCATTTACCTTCACCGATCCTCAATTTGCTTTGCCTCTTCGCTTTTGCTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E210373" ref_strand="+" ref_description="SGN-E210373 [cLEC-35-D6]">
      <seq>atttcttgagatctaacgataatcaaagtcaacaatggggctattcagctatactgtcgccggcggcggatttatactaatcggcgcttgggaatctctggtctcttcttctggtgccctgaaaaattcatcaccgtcgtccactacccaatcgccgccacaaaatccatcgacagataagcatgagcaagattctgttttttcttcatcggtcacctttgtattaatcttaatcctttcgttccttttcgttctcgattccttgttatcctttttcgacgcactcaactccaaagacaacattggttccgtccttcaattgcaggttatcgcgatttctcttcttttctttctctattcggnattaggtctcatgacccgcttgaaaagttcttttcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="91870" stop="92870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92170" g_stop="92570" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E210373" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92170" e_stop="92570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTTGAGATCTAACGATAATCAAAGTCAACAATGGGGCTATTCAGCTATACTGTCGCCGGCGGCGGATTTATACTAATCGGCGCTTGGGAATCTCTGGTCTCTTCTTCTGGTGCCCTGAAAAATTCATCACCGTCGTCCACTACCCAATCGCCGCCACAAAATCCATCGACAGATAAGCATGAGCAAGATTCTGTTTTTTCTTCATCGGTCACCTTTGTATTAATCTTAATCCTTTCGTTCCTTTTCGTTCTCGATTCCTTGTTATCCTTTTTCGACGCACTCAACTCCAAAGACAACATTGGTTCCGTCCTTCAATTGCAGGTTATCGCGATTTCTCTTCTTTTCTTTCTCTATTCGGTATTAGGTCTCATGACCCGCTTGAAAAGTTCTTTTCATT</genome_strand>
        <mrna_strand>ATTTCTTGAGATCTAACGATAATCAAAGTCAACAATGGGGCTATTCAGCTATACTGTCGCCGGCGGCGGATTTATACTAATCGGCGCTTGGGAATCTCTGGTCTCTTCTTCTGGTGCCCTGAAAAATTCATCACCGTCGTCCACTACCCAATCGCCGCCACAAAATCCATCGACAGATAAGCATGAGCAAGATTCTGTTTTTTCTTCATCGGTCACCTTTGTATTAATCTTAATCCTTTCGTTCCTTTTCGTTCTCGATTCCTTGTTATCCTTTTTCGACGCACTCAACTCCAAAGACAACATTGGTTCCGTCCTTCAATTGCAGGTTATCGCGATTTCTCTTCTTTTCTTTCTCTATTCGGNATTAGGTCTCATGACCCGCTTGAAAAGTTCTTTTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E698856" ref_strand="+" ref_description="SGN-E698856 [FA07DC03]">
      <seq>agctatactgtcgccggcggcggacttatactaatcggcgcttgggaatctctggtctcttcttctggtgccctgaaaaattcatcaccgtcgtccactacccaatcgccgccacaaaatccatcgacagataagcatgagcaagattctgttttttcttcatcggtcacctttgtattaatcttaatcctttcgttccttttcgttctcgattccttgttatcctttttcgacgcactcaactccaaagacaacattggttccgtccttcaattgcaggttatcgcgatttctcttcttttctttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="91916" stop="92824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92216" g_stop="92524" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E698856" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>309</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92216" e_stop="92524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTATACTGTCGCCGGCGGCGGATTTATACTAATCGGCGCTTGGGAATCTCTGGTCTCTTCTTCTGGTGCCCTGAAAAATTCATCACCGTCGTCCACTACCCAATCGCCGCCACAAAATCCATCGACAGATAAGCATGAGCAAGATTCTGTTTTTTCTTCATCGGTCACCTTTGTATTAATCTTAATCCTTTCGTTCCTTTTCGTTCTCGATTCCTTGTTATCCTTTTTCGACGCACTCAACTCCAAAGACAACATTGGTTCCGTCCTTCAATTGCAGGTTATCGCGATTTCTCTTCTTTTCTTTCTC</genome_strand>
        <mrna_strand>AGCTATACTGTCGCCGGCGGCGGACTTATACTAATCGGCGCTTGGGAATCTCTGGTCTCTTCTTCTGGTGCCCTGAAAAATTCATCACCGTCGTCCACTACCCAATCGCCGCCACAAAATCCATCGACAGATAAGCATGAGCAAGATTCTGTTTTTTCTTCATCGGTCACCTTTGTATTAATCTTAATCCTTTCGTTCCTTTTCGTTCTCGATTCCTTGTTATCCTTTTTCGACGCACTCAACTCCAAAGACAACATTGGTTCCGTCCTTCAATTGCAGGTTATCGCGATTTCTCTTCTTTTCTTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E439562" ref_strand="+" ref_description="SGN-E439562 [cSTA-12-L13]">
      <seq>acaaaatccatcgacagataagcatgagcaagattctgttttttcttcatcggtcacctttgtattaatcttaatcctttcgttccttttcgttctcgattccttgttatcctttttcgacgcactcaactccaaagacaacattggttccgtccttcaattgcaggttatcgcgatttctcttcttttctttctctattcggtattaggtctcatgacccgcttgaaaagttcttttcatttaccttcaccgatcctcaatttgctttgcctcttcgcttttgctgaggaatttttgttgttttatcttcaaaggaaagacccaagtggagttgaaaatcgttactataatctcttgcttgtgcctattgctatttgtgcattttgttcatttctagaattgaaaaatcccaaatcaaattacactagattaggacgtgggattgggttaatcttgcaagggacgtggactcttcaaatggggtttgcttttttctccgatttgattgcacagggatgctatttacatcaaaggagtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="92029" stop="93168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92329" g_stop="92868" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="540" r_length="540" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E439562" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E439562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92329" e_stop="92868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAATCCATCGACAGATAAGCATGAGCAAGATTCTGTTTTTTCTTCATCGGTCACCTTTGTATTAATCTTAATCCTTTCGTTCCTTTTCGTTCTCGATTCCTTGTTATCCTTTTTCGACGCACTCAACTCCAAAGACAACATTGGTTCCGTCCTTCAATTGCAGGTTATCGCGATTTCTCTTCTTTTCTTTCTCTATTCGGTATTAGGTCTCATGACCCGCTTGAAAAGTTCTTTTCATTTACCTTCACCGATCCTCAATTTGCTTTGCCTCTTCGCTTTTGCTGAGGAATTTTTGTTGTTTTATCTTCAAAGGAAAGACCCAAGTGGAGTTGAAAATCGTTACTATAATCTCTTGCTTGTGCCTATTGCTATTTGTGCATTTTGTTCATTTCTAGAATTGAAAAATCCCAAATCAAATTACACTAGATTAGGACGTGGGATTGGGTTAATCTTGCAAGGGACGTGGACTCTTCAAATGGGGTTTGCTTTTTTCTCCGATTTGATTGCACAGGGATGCTATTTACATCAAAGGAGTAG</genome_strand>
        <mrna_strand>ACAAAATCCATCGACAGATAAGCATGAGCAAGATTCTGTTTTTTCTTCATCGGTCACCTTTGTATTAATCTTAATCCTTTCGTTCCTTTTCGTTCTCGATTCCTTGTTATCCTTTTTCGACGCACTCAACTCCAAAGACAACATTGGTTCCGTCCTTCAATTGCAGGTTATCGCGATTTCTCTTCTTTTCTTTCTCTATTCGGTATTAGGTCTCATGACCCGCTTGAAAAGTTCTTTTCATTTACCTTCACCGATCCTCAATTTGCTTTGCCTCTTCGCTTTTGCTGAGGAATTTTTGTTGTTTTATCTTCAAAGGAAAGACCCAAGTGGAGTTGAAAATCGTTACTATAATCTCTTGCTTGTGCCTATTGCTATTTGTGCATTTTGTTCATTTCTAGAATTGAAAAATCCCAAATCAAATTACACTAGATTAGGACGTGGGATTGGGTTAATCTTGCAAGGGACGTGGACTCTTCAAATGGGGTTTGCTTTTTTCTCCGATTTGATTGCACAGGGATGCTATTTACATCAAAGGAGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E590051" ref_strand="+" ref_description="SGN-E590051 [43639]">
      <seq>gttaatcttaatcctttcattccttttcgttctcgattccttgttatcctttttcgacgcactcaactcaaaagacaacattggttccgtccttcaattgcaggttatcgccatttctcttcttttctttctctattcggtattaggtctcatgacccgcttgaaaaaatcattcgatttaccttcaccgatcctcaatttgctatgtctcttcgcttttgctgaggaatttgtgttgttttatcttcaaaggaaagacccaagtggagttgagaatcgttactatgatctcttgcttgtgcctattgctatttgtgcattttgttcatttctagaattgaaaaatcccaaatcgaattacactagattaggacgtgggattgggttaatcttgcaagggatgtggactcttcaaatggggtttgcttttttctccgacttgattacacagggatgctatttgcatgaaaggagtagaggtaactacacggttaagtgtaaaggtcatcctcagtaccatcgaggtggagctattgctacccttcagttcaattgccaccttgctcttcttgtagctgtggttacttttgtatactcaattgtgtgtgaaaatcacggcattggccgtgaacatatgcggtatagacctattggagctgagatgcaacacttggaaatagatagtcaagctcattttacgttggagtctgatgaagaggatgacaatgagaatgggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="92093" stop="93429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92392" g_stop="93129" g_length="738"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="738" r_length="738" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E590051" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E590051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92392" e_stop="93129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAATCTTAATCCTTTCGTTCCTTTTCGTTCTCGATTCCTTGTTATCCTTTTTCGACGCACTCAACTCCAAAGACAACATTGGTTCCGTCCTTCAATTGCAGGTTATCGCGATTTCTCTTCTTTTCTTTCTCTATTCGGTATTAGGTCTCATGACCCGCTTGAAAAGTTCTTTTCATTTACCTTCACCGATCCTCAATTTGCTTTGCCTCTTCGCTTTTGCTGAGGAATTTTTGTTGTTTTATCTTCAAAGGAAAGACCCAAGTGGAGTTGAAAATCGTTACTATAATCTCTTGCTTGTGCCTATTGCTATTTGTGCATTTTGTTCATTTCTAGAATTGAAAAATCCCAAATCAAATTACACTAGATTAGGACGTGGGATTGGGTTAATCTTGCAAGGGACGTGGACTCTTCAAATGGGGTTTGCTTTTTTCTCCGATTTGATTGCACAGGGATGCTATTTACATCAAAGGAGTAGAGGTAATTACACGGTTAAGTGTAAAGGTCATCCTCAGTACCATCGAGGTGGAGCTATTGCTACCCTTCAGTTCAATTGCCACCTTGCTCTTCTTGTGACTGTGATTACTTTTGTATACTCAATTGTGTGTAAAAAACATGGCATTGGCCGTGAACATATGCGGTATAGACCTATTGGAGCTGAGATGCAACACTTGGAAATCGATAGTCAAGCTCATTTTACATTGGAGTCTGATGAAGAGGATGACAATGAGAATGGGAT</genome_strand>
        <mrna_strand>GTTAATCTTAATCCTTTCATTCCTTTTCGTTCTCGATTCCTTGTTATCCTTTTTCGACGCACTCAACTCAAAAGACAACATTGGTTCCGTCCTTCAATTGCAGGTTATCGCCATTTCTCTTCTTTTCTTTCTCTATTCGGTATTAGGTCTCATGACCCGCTTGAAAAAATCATTCGATTTACCTTCACCGATCCTCAATTTGCTATGTCTCTTCGCTTTTGCTGAGGAATTTGTGTTGTTTTATCTTCAAAGGAAAGACCCAAGTGGAGTTGAGAATCGTTACTATGATCTCTTGCTTGTGCCTATTGCTATTTGTGCATTTTGTTCATTTCTAGAATTGAAAAATCCCAAATCGAATTACACTAGATTAGGACGTGGGATTGGGTTAATCTTGCAAGGGATGTGGACTCTTCAAATGGGGTTTGCTTTTTTCTCCGACTTGATTACACAGGGATGCTATTTGCATGAAAGGAGTAGAGGTAACTACACGGTTAAGTGTAAAGGTCATCCTCAGTACCATCGAGGTGGAGCTATTGCTACCCTTCAGTTCAATTGCCACCTTGCTCTTCTTGTAGCTGTGGTTACTTTTGTATACTCAATTGTGTGTGAAAATCACGGCATTGGCCGTGAACATATGCGGTATAGACCTATTGGAGCTGAGATGCAACACTTGGAAATAGATAGTCAAGCTCATTTTACGTTGGAGTCTGATGAAGAGGATGACAATGAGAATGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E266834" ref_strand="+" ref_description="SGN-E266834 [cLEI-7-L21]">
      <seq>cttttctttctctattcggaattaggactcatgacccgcttgaaaagtacttttcatttaccttcaccgatcctcaatttgcttcgcctcttcgctttggctgaggaatttttgttgttttatcttcaaaggaaagacccaagtggagttgaaaatcgttactataatctcttgcttgtgcctattgctatttgtgcattctgttcatttctaaaatagaaaaatcccaaatcaaatcacactagattaggacgtgggattgggataatcttgcaagggacatggactcttcaaatggggctcgcttttttctccgatttgattgcacaaggatgctattgacatcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="92213" stop="93161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92513" g_stop="92861" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E266834" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>349</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92513" e_stop="92861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCTTTCTCTATTCGGTATTAGGTCTCATGACCCGCTTGAAAAGTTCTTTTCATTTACCTTCACCGATCCTCAATTTGCTTTGCCTCTTCGCTTTTGCTGAGGAATTTTTGTTGTTTTATCTTCAAAGGAAAGACCCAAGTGGAGTTGAAAATCGTTACTATAATCTCTTGCTTGTGCCTATTGCTATTTGTGCATTTTGTTCATTTCTAGAATTGAAAAATCCCAAATCAAATTACACTAGATTAGGACGTGGGATTGGGTTAATCTTGCAAGGGACGTGGACTCTTCAAATGGGGTTTGCTTTTTTCTCCGATTTGATTGCACAGGGATGCTATTTACATCAAA</genome_strand>
        <mrna_strand>CTTTTCTTTCTCTATTCGGAATTAGGACTCATGACCCGCTTGAAAAGTACTTTTCATTTACCTTCACCGATCCTCAATTTGCTTCGCCTCTTCGCTTTGGCTGAGGAATTTTTGTTGTTTTATCTTCAAAGGAAAGACCCAAGTGGAGTTGAAAATCGTTACTATAATCTCTTGCTTGTGCCTATTGCTATTTGTGCATTCTGTTCATTTCTAAAATAGAAAAATCCCAAATCAAATCACACTAGATTAGGACGTGGGATTGGGATAATCTTGCAAGGGACATGGACTCTTCAAATGGGGCTCGCTTTTTTCTCCGATTTGATTGCACAAGGATGCTATTGACATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E578104" ref_strand="+" ref_description="SGN-E578104 [LE08EB09]">
      <seq>tttttaaggaaaatatacttaaatcacttcaaagaaaatttctaagacaacattacaatttgaactagaatcatcaaatacaaaaagactgaaactttctcttttctatatgtaaattctttatacaaagggaaccccaacctctaaaccataacccctctgcaaagaatatatctttatacccagtaacataaaaaatgaaccatgggtttcctcaaggatgggtatgatagccattagtttctgattcaggaacaggtacaatagccttttgcatttcaacattcatctcttcttttatcccattctcattgtcatcctcttcatcagactccaatgtaaaatgagcttgactatcgatttccaagtgttgcatctcagctccaataggtctataccgcatatgttcacggccaatgccatgttttttacacacaattgagtatacaaaagtaatcacagtcacaagaagagcaaggtggcaattgaactgaagggtagcaatagctccacctcgatggtactgaggatgacctttacacttaaccgtgtaattacctctactcctttgatgtaaatagcatccctgtgcaatcaaatcggagaaaaaagcaaaccccatttgaagagtccacgtcccttgcaagattaacccaatcccacgtcctaatctagtgtaatttgatttgggatttttcaattctagaaatgaacaaaatgcacaaatagcaataggcacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="93725" stop="92387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93428" g_stop="92687" g_length="742"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="742" r_length="742" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E578104" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93428" e_stop="92687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATAAAGGAAAATATACTTAAATCACTTCAAAGAAAATTTCTAAGACAACATTACAATTTGAACTAGAATCATCAAATACAAAAAGACTGAAACTTTCTCTTTTCTATATGTAAATTCTTTATACAAAGGGAACCCCAACCTCTAAACCATAACCCCTCTGCAAAGAATATATCTTTATACCCAGTAACATAAAAAATGAACCATGGGTTTCCTCAAGGATGGGTATGATAGCCATTAGTTTCTGATTCAGGAACAGGTACAATAGCCTTTTGCATTTCAACATTCATCTCTTCTTTTATCCCATTCTCATTGTCATCCTCTTCATCAGACTCCAATGTAAAATGAGCTTGACTATCGATTTCCAAGTGTTGCATCTCAGCTCCAATAGGTCTATACCGCATATGTTCACGGCCAATGCCATGTTTTTTACACACAATTGAGTATACAAAAGTAATCACAGTCACAAGAAGAGCAAGGTGGCAATTGAACTGAAGGGTAGCAATAGCTCCACCTCGATGGTACTGAGGATGACCTTTACACTTAACCGTGTAATTACCTCTACTCCTTTGATGTAAATAGCATCCCTGTGCAATCAAATCGGAGAAAAAAGCAAACCCCATTTGAAGAGTCCACGTCCCTTGCAAGATTAACCCAATCCCACGTCCTAATCTAGTGTAATTTGATTTGGGATTTTTCAATTCTAGAAATGAACAAAATGCACAAATAGCAATAGGCACAAG</genome_strand>
        <mrna_strand>TTTTTAAGGAAAATATACTTAAATCACTTCAAAGAAAATTTCTAAGACAACATTACAATTTGAACTAGAATCATCAAATACAAAAAGACTGAAACTTTCTCTTTTCTATATGTAAATTCTTTATACAAAGGGAACCCCAACCTCTAAACCATAACCCCTCTGCAAAGAATATATCTTTATACCCAGTAACATAAAAAATGAACCATGGGTTTCCTCAAGGATGGGTATGATAGCCATTAGTTTCTGATTCAGGAACAGGTACAATAGCCTTTTGCATTTCAACATTCATCTCTTCTTTTATCCCATTCTCATTGTCATCCTCTTCATCAGACTCCAATGTAAAATGAGCTTGACTATCGATTTCCAAGTGTTGCATCTCAGCTCCAATAGGTCTATACCGCATATGTTCACGGCCAATGCCATGTTTTTTACACACAATTGAGTATACAAAAGTAATCACAGTCACAAGAAGAGCAAGGTGGCAATTGAACTGAAGGGTAGCAATAGCTCCACCTCGATGGTACTGAGGATGACCTTTACACTTAACCGTGTAATTACCTCTACTCCTTTGATGTAAATAGCATCCCTGTGCAATCAAATCGGAGAAAAAAGCAAACCCCATTTGAAGAGTCCACGTCCCTTGCAAGATTAACCCAATCCCACGTCCTAATCTAGTGTAATTTGATTTGGGATTTTTCAATTCTAGAAATGAACAAAATGCACAAATAGCAATAGGCACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E321942" ref_strand="+" ref_description="SGN-E321942 [cTOB-29-C8]">
      <seq>tttttttgttaagaaagttagtcgtcattactatcaaagagtaagtcttccatagacacacaataaaggaaaatatacttaaatcacttcaaagaaaatttctaagacaacattacaatttgaactagaatcatcaaatacaaaaagactgaaactttctcttttctatatgtaaattctttatacaaagggaaccccaacctctaaaccataacccctctgcaaagaatatatctttatacccagtaacataaaaaatgaaccatgggtttcctcaaggatgggtatgatagccattagtttctgattcaggaacaggtacaatagccttttgcatttcaacattcatctcttcttttatcccattctcattgtcatcctcttcatcagactccaatgtaaaatgagcttgactatcgatttccaagtgttgcatctcagctccaataggtctataccgcatatgttcacggccaatgccatgttttttacacacaattgagtatacaaaagtaatcacagtcacaagaagagcaaggtggcaattgaactgaagggtagcaatagctccacctcgatggtactgaggatgacctttacacttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="93785" stop="92583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93488" g_stop="92883" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="606" r_length="606" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E321942" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93488" e_stop="92883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTTTGTTAAGAAAGTTAGTCGTCATTACTATCAAAGAGTAAGTCTTCCATAGACACACAATAAAGGAAAATATACTTAAATCACTTCAAAGAAAATTTCTAAGACAACATTACAATTTGAACTAGAATCATCAAATACAAAAAGACTGAAACTTTCTCTTTTCTATATGTAAATTCTTTATACAAAGGGAACCCCAACCTCTAAACCATAACCCCTCTGCAAAGAATATATCTTTATACCCAGTAACATAAAAAATGAACCATGGGTTTCCTCAAGGATGGGTATGATAGCCATTAGTTTCTGATTCAGGAACAGGTACAATAGCCTTTTGCATTTCAACATTCATCTCTTCTTTTATCCCATTCTCATTGTCATCCTCTTCATCAGACTCCAATGTAAAATGAGCTTGACTATCGATTTCCAAGTGTTGCATCTCAGCTCCAATAGGTCTATACCGCATATGTTCACGGCCAATGCCATGTTTTTTACACACAATTGAGTATACAAAAGTAATCACAGTCACAAGAAGAGCAAGGTGGCAATTGAACTGAAGGGTAGCAATAGCTCCACCTCGATGGTACTGAGGATGACCTTTACACTTAA</genome_strand>
        <mrna_strand>TTTTTTTGTTAAGAAAGTTAGTCGTCATTACTATCAAAGAGTAAGTCTTCCATAGACACACAATAAAGGAAAATATACTTAAATCACTTCAAAGAAAATTTCTAAGACAACATTACAATTTGAACTAGAATCATCAAATACAAAAAGACTGAAACTTTCTCTTTTCTATATGTAAATTCTTTATACAAAGGGAACCCCAACCTCTAAACCATAACCCCTCTGCAAAGAATATATCTTTATACCCAGTAACATAAAAAATGAACCATGGGTTTCCTCAAGGATGGGTATGATAGCCATTAGTTTCTGATTCAGGAACAGGTACAATAGCCTTTTGCATTTCAACATTCATCTCTTCTTTTATCCCATTCTCATTGTCATCCTCTTCATCAGACTCCAATGTAAAATGAGCTTGACTATCGATTTCCAAGTGTTGCATCTCAGCTCCAATAGGTCTATACCGCATATGTTCACGGCCAATGCCATGTTTTTTACACACAATTGAGTATACAAAAGTAATCACAGTCACAAGAAGAGCAAGGTGGCAATTGAACTGAAGGGTAGCAATAGCTCCACCTCGATGGTACTGAGGATGACCTTTACACTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E461918" ref_strand="+" ref_description="SGN-E461918 [cPRO-10-A21]">
      <seq>ctaaacaaggtatgacaatgacaagaaacattggaagcaacttccgaattccaccagctgcacttcagagttcaatcacaatatctataatcctgctcatgcctctttacgacacatgctttatccccttcattcgtgttttgacacgtaatgagaaaggtatcactgtgatgcagagaatgggaatagggatgttcctttcagtgatagcaatgataattgcagctgttaccgaaagaaaaagactggatattgccagaaatctaggtactttaacttcagaatttgaagctttgccaatgagcatattttggttgctgcctcaatacatattattgggaatttcagatatattcacagttgtcggtatgcaagagttcttttactctgaagttccgataaatatgagaactttaggcatagctctttatactagtgtatttggttgtggtagtttcttcagctcattccttataacagtgattgaacatttgacaagttcaattggagaaaagcagaactggttcgccgatgacatgagcaaagcccgtttagacaactactactggtttctggcattgtcaagtgcaaccagttttttgatgtttatggttttctgtcgattttatagaagcaggacagttaattagagtctttttgttattgtggaatgttgtgttttgcacattcatttctaagtagaaagtgaagttctgcacagcttgtatataaaggaagatatattttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="98225" stop="96860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97925" g_stop="97163" g_length="763"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="748" r_length="748" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E461918" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="1.017" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E461918" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97925" e_stop="97163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAACAAGGTATGACAATGAGGAGAAACATCGGAAGCAGCTTCCGAATTCCACCAGCTGCACTTCAGAGTTCAATCACAATATCTATAATCCTGCTTATGCCTCTTTACGACACGTGCTTTATCCCCTTCATTCGTGTTTTGACACGTAATGAGAAAGGCATCACTGTGATGCAGAGAATGGGAATAGGGATGTTTCTTTCAGTGATAGCAATGATAATTGCTGCTGTTACCGAAAGAAAAAGACTGGATATTGCCAGAAATGTAGGTACTTTAACTTCAGAATTCGAAGCTTTGCCAATGAGCATATTTTGGTTGCTGCCTCAGTACATCTTATTGGGAATTTCAGATATATTCACAGTTGTTGGTATGCAAGAGTTCTTTTACTCTGAAGTTCCGATAAATATGAGAACTTTAGGCATAGCTCTTTATACTAGTGTATTTGGTTGTGGTAGTTTCTTCAGCTCATTCCTTATAACAGTGATTGAACATTTGACAAGTTCAATAGGAGAAAAGCAGAACTGGTTCGCCGATGACATGAGCAGAGCCCGTTTAGACAACTATTACTGGTTTCTGGCATTGTCAAGTGCAGCCAGTTTTATGATGTTTATGGTTTTCTGTCGATTTTATAGAAGCAGGACAGTTAATTAGAGTGTTGGTAGTGACTGATAATTTGTTATTGTGGAATGTTGTGTTTTGCACATTCATTTTTCTAAGTAGAAAGTGAAGGT-TCTGCA-CTTGTATATAAAGGAAGATATATCTAG</genome_strand>
        <mrna_strand>CTAAACAAGGTATGACAATGACAAGAAACATTGGAAGCAACTTCCGAATTCCACCAGCTGCACTTCAGAGTTCAATCACAATATCTATAATCCTGCTCATGCCTCTTTACGACACATGCTTTATCCCCTTCATTCGTGTTTTGACACGTAATGAGAAAGGTATCACTGTGATGCAGAGAATGGGAATAGGGATGTTCCTTTCAGTGATAGCAATGATAATTGCAGCTGTTACCGAAAGAAAAAGACTGGATATTGCCAGAAATCTAGGTACTTTAACTTCAGAATTTGAAGCTTTGCCAATGAGCATATTTTGGTTGCTGCCTCAATACATATTATTGGGAATTTCAGATATATTCACAGTTGTCGGTATGCAAGAGTTCTTTTACTCTGAAGTTCCGATAAATATGAGAACTTTAGGCATAGCTCTTTATACTAGTGTATTTGGTTGTGGTAGTTTCTTCAGCTCATTCCTTATAACAGTGATTGAACATTTGACAAGTTCAATTGGAGAAAAGCAGAACTGGTTCGCCGATGACATGAGCAAAGCCCGTTTAGACAACTACTACTGGTTTCTGGCATTGTCAAGTGCAACCAGTTTTTTGATGTTTATGGTTTTCTGTCGATTTTATAGAAGCAGGACAGTTAATT--A------G-AGT--CT--T--TTTGTTATTGTGGAATGTTGTGTTTTGCACATTCA--TTTCTAAGTAGAAAGTGAAGTTCTGCACAGCTTGTATATAAAGGAAGATATATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E540975" ref_strand="-" ref_description="SGN-E540975 [TUS-61-I11]">
      <seq>ttttgacacgtaatgagacaggcatcactgtgatgcagagaatgggaatagggatgtttctttcagtgatagcaatgataattgctgctgttaccgaaagaaaaagactggatatgcccagaaatgtaggtactttaacttcagaattcgaagctttgccaatgagcatattttggttgctgcctcagtacatcttattgggaatttcagatatattcacagttgttggtatgcaagagttcttttactctgaagttccgataaatatgagaactttaggcatagctctttatactagtgtatttggttgtggtagtttcttcagctcattccttataacagtgattgaacatttgacaagttcaataggagaaaagcagaactggttcgccgatgacatgagcagagcccgtttagacaactattactggtttctggcattgtcaagtgcagccagttttatgatgtttatggttttctgtcgattttatagaagcaggacagttaattagagtgttggtagtgactgataatttgttattgtggaatgttgtgttttgcacattcatttttctaagtagaaagtgaaggttctgcacttgtatataaaggaagatatatctagtaaaaaaaaaaaaaaaaaaaaaaactcgagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="98087" stop="96854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97787" g_stop="97164" g_length="624"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="624" r_length="624" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="627" polyA_stop="650"/>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E540975" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540975" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="97787" e_stop="97164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGACACGTAATGAGAAAGGCATCACTGTGATGCAGAGAATGGGAATAGGGATGTTTCTTTCAGTGATAGCAATGATAATTGCTGCTGTTACCGAAAGAAAAAGACTGGATATTGCCAGAAATGTAGGTACTTTAACTTCAGAATTCGAAGCTTTGCCAATGAGCATATTTTGGTTGCTGCCTCAGTACATCTTATTGGGAATTTCAGATATATTCACAGTTGTTGGTATGCAAGAGTTCTTTTACTCTGAAGTTCCGATAAATATGAGAACTTTAGGCATAGCTCTTTATACTAGTGTATTTGGTTGTGGTAGTTTCTTCAGCTCATTCCTTATAACAGTGATTGAACATTTGACAAGTTCAATAGGAGAAAAGCAGAACTGGTTCGCCGATGACATGAGCAGAGCCCGTTTAGACAACTATTACTGGTTTCTGGCATTGTCAAGTGCAGCCAGTTTTATGATGTTTATGGTTTTCTGTCGATTTTATAGAAGCAGGACAGTTAATTAGAGTGTTGGTAGTGACTGATAATTTGTTATTGTGGAATGTTGTGTTTTGCACATTCATTTTTCTAAGTAGAAAGTGAAGGTTCTGCACTTGTATATAAAGGAAGATATATCTA</genome_strand>
        <mrna_strand>TTTTGACACGTAATGAGACAGGCATCACTGTGATGCAGAGAATGGGAATAGGGATGTTTCTTTCAGTGATAGCAATGATAATTGCTGCTGTTACCGAAAGAAAAAGACTGGATATGCCCAGAAATGTAGGTACTTTAACTTCAGAATTCGAAGCTTTGCCAATGAGCATATTTTGGTTGCTGCCTCAGTACATCTTATTGGGAATTTCAGATATATTCACAGTTGTTGGTATGCAAGAGTTCTTTTACTCTGAAGTTCCGATAAATATGAGAACTTTAGGCATAGCTCTTTATACTAGTGTATTTGGTTGTGGTAGTTTCTTCAGCTCATTCCTTATAACAGTGATTGAACATTTGACAAGTTCAATAGGAGAAAAGCAGAACTGGTTCGCCGATGACATGAGCAGAGCCCGTTTAGACAACTATTACTGGTTTCTGGCATTGTCAAGTGCAGCCAGTTTTATGATGTTTATGGTTTTCTGTCGATTTTATAGAAGCAGGACAGTTAATTAGAGTGTTGGTAGTGACTGATAATTTGTTATTGTGGAATGTTGTGTTTTGCACATTCATTTTTCTAAGTAGAAAGTGAAGGTTCTGCACTTGTATATAAAGGAAGATATATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E294217" ref_strand="-" ref_description="SGN-E294217 [cLET-14-E21]">
      <seq>ctttgccaatgagcatattttggttgctgcctcagtacatcttattgggaatttcagatatattcacagttgttggtatgcaagagttcttttactctgaagttccgataaatatgagaactttaggcatagctctttatactagtgtatttggttgtggtagtttcttcagctcattccttataacagtgattgaacatttgacaagttcaataggagaaaagcagaactggttcgccgatgacatgagcagagcccgtttagacaactattactggtttctggcattgtcaagtgcagccagttttatgatgtttatggttttctgtcgattttatagaagcaggacagttaattagagtgttggtagtgactgataatttgttattgtggaatgttgtgttttgcacattcatttttctaagtagaaagtgaaggttctgcacttgtatataaaggaagatatatctagtaaaaaaaaaaaaaaaaaaaaaaactcgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="97934" stop="96854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97634" g_stop="97164" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="471" r_length="471" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="474" polyA_stop="497"/>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E294217" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294217" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="97634" e_stop="97164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGCCAATGAGCATATTTTGGTTGCTGCCTCAGTACATCTTATTGGGAATTTCAGATATATTCACAGTTGTTGGTATGCAAGAGTTCTTTTACTCTGAAGTTCCGATAAATATGAGAACTTTAGGCATAGCTCTTTATACTAGTGTATTTGGTTGTGGTAGTTTCTTCAGCTCATTCCTTATAACAGTGATTGAACATTTGACAAGTTCAATAGGAGAAAAGCAGAACTGGTTCGCCGATGACATGAGCAGAGCCCGTTTAGACAACTATTACTGGTTTCTGGCATTGTCAAGTGCAGCCAGTTTTATGATGTTTATGGTTTTCTGTCGATTTTATAGAAGCAGGACAGTTAATTAGAGTGTTGGTAGTGACTGATAATTTGTTATTGTGGAATGTTGTGTTTTGCACATTCATTTTTCTAAGTAGAAAGTGAAGGTTCTGCACTTGTATATAAAGGAAGATATATCTA</genome_strand>
        <mrna_strand>CTTTGCCAATGAGCATATTTTGGTTGCTGCCTCAGTACATCTTATTGGGAATTTCAGATATATTCACAGTTGTTGGTATGCAAGAGTTCTTTTACTCTGAAGTTCCGATAAATATGAGAACTTTAGGCATAGCTCTTTATACTAGTGTATTTGGTTGTGGTAGTTTCTTCAGCTCATTCCTTATAACAGTGATTGAACATTTGACAAGTTCAATAGGAGAAAAGCAGAACTGGTTCGCCGATGACATGAGCAGAGCCCGTTTAGACAACTATTACTGGTTTCTGGCATTGTCAAGTGCAGCCAGTTTTATGATGTTTATGGTTTTCTGTCGATTTTATAGAAGCAGGACAGTTAATTAGAGTGTTGGTAGTGACTGATAATTTGTTATTGTGGAATGTTGTGTTTTGCACATTCATTTTTCTAAGTAGAAAGTGAAGGTTCTGCACTTGTATATAAAGGAAGATATATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E430448" ref_strand="-" ref_description="SGN-E430448 [STM-53-P11]">
      <seq>atttgaagctttgccaatgagcatattttggttgctgcctcaatacatattattgggaatttcagatatattcacagttgtcggtatgcaagagtttttttattttgaagttccgataaatatgagaactttaggcatagctctttatactagtgtatttggttggggtagtttcttcagctcattccttataacagtgattgaacatttgacaagttcaattggagaaaagcagaactggttcgccgatgacatgagcaaagcccgtttagacaactactactggtttttggcattgtcaagtgcaaccagttttttgatgtttatggttttctgtcgattttatagaagcaggccagttaattagagtctttttgttattgtggaatgttgtgttttgcacattcatttttaagtagaaagtgaaggttttgcacagcttgtatataaaggaagatatattttgcttcgtaaaaaaaaaaaaaaaaaaaacaaaaaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="97942" stop="96854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97642" g_stop="97189" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="473" polyA_stop="500"/>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E430448" ref_strand="-">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E430448" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="97642" e_stop="97189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCGAAGCTTTGCCAATGAGCATATTTTGGTTGCTGCCTCAGTACATCTTATTGGGAATTTCAGATATATTCACAGTTGTTGGTATGCAAGAGTTCTTTTACTCTGAAGTTCCGATAAATATGAGAACTTTAGGCATAGCTCTTTATACTAGTGTATTTGGTTGTGGTAGTTTCTTCAGCTCATTCCTTATAACAGTGATTGAACATTTGACAAGTTCAATAGGAGAAAAGCAGAACTGGTTCGCCGATGACATGAGCAGAGCCCGTTTAGACAACTATTACTGGTTTCTGGCATTGTCAAGTGCAGCCAGTTTTATGATGTTTATGGTTTTCTGTCGATTTTATAGAAGCAGGACAGTTAATTAGAGTGTTGGTAGTGACTGATAATTTGTTATTGTGGAATGTTGTGTTTTGCACATTCATTTTTCTAAGTAGAAAGTGAAGGTTCTGCAC</genome_strand>
        <mrna_strand>ATTTGAAGCTTTGCCAATGAGCATATTTTGGTTGCTGCCTCAATACATATTATTGGGAATTTCAGATATATTCACAGTTGTCGGTATGCAAGAGTTTTTTTATTTTGAAGTTCCGATAAATATGAGAACTTTAGGCATAGCTCTTTATACTAGTGTATTTGGTTGGGGTAGTTTCTTCAGCTCATTCCTTATAACAGTGATTGAACATTTGACAAGTTCAATTGGAGAAAAGCAGAACTGGTTCGCCGATGACATGAGCAAAGCCCGTTTAGACAACTACTACTGGTTTTTGGCATTGTCAAGTGCAACCAGTTTTTTGATGTTTATGGTTTTCTGTCGATTTTATAGAAGCAGGCCAGTTAATT--A------G-AGT--CT--T--TTTGTTATTGTGGAATGTTGTGTTTTGCACATTCA-TTTT-TAAGTAGAAAGTGAAGGTTTTGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E615520" ref_strand="+" ref_description="SGN-E615520 [65319]">
      <seq>gtgatgcagagaatgggaatagggatgttcctttcagtgatagcaatgataattgcagctgttaccgaaagaaaacgactggatattgccagaaatctaggtactttaacttcagaatttgaagctttgccaatgagcatattttggttgctgcctcaatacatattattgggaatttcagatatattcacagttgtcggtatgcaagagttcttttactctgaagttccgataaatatgagaactttaggcatagctctttatactagtgtatttggttggtggtagtttcttcaggctcattcccttataacagtgattgaacatttgacaagttcaataggagaaaagcagaactcgttcgccgatgacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="98058" stop="97088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97758" g_stop="97388" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E615520" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E615520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97758" e_stop="97388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATGCAGAGAATGGGAATAGGGATGTTTCTTTCAGTGATAGCAATGATAATTGCTGCTGTTACCGAAAGAAAAAGACTGGATATTGCCAGAAATGTAGGTACTTTAACTTCAGAATTCGAAGCTTTGCCAATGAGCATATTTTGGTTGCTGCCTCAGTACATCTTATTGGGAATTTCAGATATATTCACAGTTGTTGGTATGCAAGAGTTCTTTTACTCTGAAGTTCCGATAAATATGAGAACTTTAGGCATAGCTCTTTATACTAGTGTATTTGGTT-GTGGTAGTTTCTTCA-GCTCATT-CCTTATAACAGTGATTGAACATTTGACAAGTTCAATAGGAGAAAAGCAGAACTGGTTCGCCGATGACAT</genome_strand>
        <mrna_strand>GTGATGCAGAGAATGGGAATAGGGATGTTCCTTTCAGTGATAGCAATGATAATTGCAGCTGTTACCGAAAGAAAACGACTGGATATTGCCAGAAATCTAGGTACTTTAACTTCAGAATTTGAAGCTTTGCCAATGAGCATATTTTGGTTGCTGCCTCAATACATATTATTGGGAATTTCAGATATATTCACAGTTGTCGGTATGCAAGAGTTCTTTTACTCTGAAGTTCCGATAAATATGAGAACTTTAGGCATAGCTCTTTATACTAGTGTATTTGGTTGGTGGTAGTTTCTTCAGGCTCATTCCCTTATAACAGTGATTGAACATTTGACAAGTTCAATAGGAGAAAAGCAGAACTCGTTCGCCGATGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E430447" ref_strand="+" ref_description="SGN-E430447 [STM-53-P11]">
      <seq>cattctaagaaagaggctaaacaaggtatgacaatgacaagaaacattggaagcaactttcgacttccaccagctgcacttcagagttcaatcacaatatctataatcctgctcatgcctctttacgacacatgctttatccccttcattcgtgttttgacacgtaatgagaaaggtatcactgtgatgcagagaatgggaatagggatgttcctttcagtgatagcaatgataattgcagctgttaccgaaagaaaaagactggatattgccagaaatctaggtactttaacttcagaatttgaagctttgccaatgagcatattttggttgctgcctcaatacatattattgggaatttcagatatattcacagttgtcggtatgcaagagttcttttactctgaagttccgataaatatgagaactttaggcatagctctttatactagtgtatttggttgtggtagtttcttcagctcattccttataacagtgattgaacatttgacaagttcaattggagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="98225" stop="97113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97916" g_stop="97413" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="529" r_length="504" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E430447" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E430447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97916" e_stop="97413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATGACAATGAGGAGAAACATCGGAAGCAGCTTCCGAATTCCACCAGCTGCACTTCAGAGTTCAATCACAATATCTATAATCCTGCTTATGCCTCTTTACGACACGTGCTTTATCCCCTTCATTCGTGTTTTGACACGTAATGAGAAAGGCATCACTGTGATGCAGAGAATGGGAATAGGGATGTTTCTTTCAGTGATAGCAATGATAATTGCTGCTGTTACCGAAAGAAAAAGACTGGATATTGCCAGAAATGTAGGTACTTTAACTTCAGAATTCGAAGCTTTGCCAATGAGCATATTTTGGTTGCTGCCTCAGTACATCTTATTGGGAATTTCAGATATATTCACAGTTGTTGGTATGCAAGAGTTCTTTTACTCTGAAGTTCCGATAAATATGAGAACTTTAGGCATAGCTCTTTATACTAGTGTATTTGGTTGTGGTAGTTTCTTCAGCTCATTCCTTATAACAGTGATTGAACATTTGACAAGTTCAATAGGAGAAA</genome_strand>
        <mrna_strand>GTATGACAATGACAAGAAACATTGGAAGCAACTTTCGACTTCCACCAGCTGCACTTCAGAGTTCAATCACAATATCTATAATCCTGCTCATGCCTCTTTACGACACATGCTTTATCCCCTTCATTCGTGTTTTGACACGTAATGAGAAAGGTATCACTGTGATGCAGAGAATGGGAATAGGGATGTTCCTTTCAGTGATAGCAATGATAATTGCAGCTGTTACCGAAAGAAAAAGACTGGATATTGCCAGAAATCTAGGTACTTTAACTTCAGAATTTGAAGCTTTGCCAATGAGCATATTTTGGTTGCTGCCTCAATACATATTATTGGGAATTTCAGATATATTCACAGTTGTCGGTATGCAAGAGTTCTTTTACTCTGAAGTTCCGATAAATATGAGAACTTTAGGCATAGCTCTTTATACTAGTGTATTTGGTTGTGGTAGTTTCTTCAGCTCATTCCTTATAACAGTGATTGAACATTTGACAAGTTCAATTGGAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E540973" ref_strand="-" ref_description="SGN-E540973 [TUS-61-I11](-)">
      <seq>cccctcgagatagttctctctctctcggttttatacacataacacggatggtgaaattattcatatcaagtccttgggaggtcatatagttaaagctattagagcggctacctcaagattgacctgtggtgagattgcggtaccagataccaacaagtcaaaagttgttgagatcgaacttgaaaatgcaccactctgccaacaagattcaggcagcacggagggtacggataaaaagccggagaatgggatagtagaaattctaaaagtagtactacctctactgccagtatggactatgcttctgatgtttgcagtgatttttcaacaacctgcaacatttttcactaaacaaggtatgacaatgaggagaaacatcggaagcagcttccgaattccaccagctgcacttcagagttcaatcacaatatctataatcctgcttatgcctctttacgacacgtgctttatccccttcattcgtgttttgacacgtaatgagaaaggcatcactgtgatgcagagaatgggaatagggatgtttctttcagtgatagcaatgataattgctgctgttaccgaaagaaaaagactggatattgccagaaatgtaggtactttaacttcagaattcgaagctttgccaatgagcatattttggttgctgcctcagtacatcttattggggatttcagatatattcacagttgttggtatgcaagagttcttttactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="98706" stop="97238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98405" g_stop="98256" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="177" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98255" i_stop="98096" i_length="160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.550" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98095" g_stop="97538" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="735" r_length="558" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E540973" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540973" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="98405" e_stop="98256"/>
          <exon e_start="98095" e_stop="97538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTATACACATAACACGGATGGTGAAATTATTCATATCAAGTCCTTGGGAGGTCATATAGTTAAAGCTATTAGAGCGGCTACCTCAAGATTGACCTGTGGTGAGATTGCGGTACCAGATACCAACAAGTCAAAAGTTGTTGAGATCGAGTAAGTGTTTCTTTAAAGCTTTTGTAAACGAGTTTAAATTCTACGTACTGACAATATAAAATGGTTTCATACAATAGTAAAAAAACTAAAAATGATTACTAACCTGCTACAACATATTGCCAACCAATGCTCATTATGGCTTTGCCTTGCATTTTCTTAGACTTGAAAATGCACCACTCTGCCAACAAGATTCAGGCAGCACGGAGGGTACGGATAAAAAGCCGGAGAATGGGATAGTAGAAATTCTAAAAGTAGTACTACCTCTACTGCCAGTATGGACTATGCTTCTGATGTTTGCAGTGATTTTTCAACAACCTGCAACATTTTTCACTAAACAAGGTATGACAATGAGGAGAAACATCGGAAGCAGCTTCCGAATTCCACCAGCTGCACTTCAGAGTTCAATCACAATATCTATAATCCTGCTTATGCCTCTTTACGACACGTGCTTTATCCCCTTCATTCGTGTTTTGACACGTAATGAGAAAGGCATCACTGTGATGCAGAGAATGGGAATAGGGATGTTTCTTTCAGTGATAGCAATGATAATTGCTGCTGTTACCGAAAGAAAAAGACTGGATATTGCCAGAAATGTAGGTACTTTAACTTCAGAATTCGAAGCTTTGCCAATGAGCATATTTTGGTTGCTGCCTCAGTACATCTTATTGGGAATTTCAGATATATTCACAGTTGTTGGTATGCAAGAGTTCTTTTACTC</genome_strand>
        <mrna_strand>GTTTTATACACATAACACGGATGGTGAAATTATTCATATCAAGTCCTTGGGAGGTCATATAGTTAAAGCTATTAGAGCGGCTACCTCAAGATTGACCTGTGGTGAGATTGCGGTACCAGATACCAACAAGTCAAAAGTTGTTGAGATCGA................................................................................................................................................................ACTTGAAAATGCACCACTCTGCCAACAAGATTCAGGCAGCACGGAGGGTACGGATAAAAAGCCGGAGAATGGGATAGTAGAAATTCTAAAAGTAGTACTACCTCTACTGCCAGTATGGACTATGCTTCTGATGTTTGCAGTGATTTTTCAACAACCTGCAACATTTTTCACTAAACAAGGTATGACAATGAGGAGAAACATCGGAAGCAGCTTCCGAATTCCACCAGCTGCACTTCAGAGTTCAATCACAATATCTATAATCCTGCTTATGCCTCTTTACGACACGTGCTTTATCCCCTTCATTCGTGTTTTGACACGTAATGAGAAAGGCATCACTGTGATGCAGAGAATGGGAATAGGGATGTTTCTTTCAGTGATAGCAATGATAATTGCTGCTGTTACCGAAAGAAAAAGACTGGATATTGCCAGAAATGTAGGTACTTTAACTTCAGAATTCGAAGCTTTGCCAATGAGCATATTTTGGTTGCTGCCTCAGTACATCTTATTGGGGATTTCAGATATATTCACAGTTGTTGGTATGCAAGAGTTCTTTTACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E420549" ref_strand="-" ref_description="SGN-E420549 [STM-31-K20]">
      <seq>gaaaaacttactcgatctcaacaactttcgacttgttggtatctggtacagcaatctcaccacaggtcaatcttgcggtagccgctctaatagttttaactatatgacctcccaaagacttgatatggataagttcaccatccgtgttatgtttataaaacctgttgccaaatctgaagactacaattgacactatcatggcaatcgagggaatggcgaaacctaatccccatcctaacgtgtcctgtatatacgacataatggacactccaagtaggctgccacaacatatgccaaaataccaccagtggaaaaatgtactctttttcttggagctctggtcattctttgtacagggcaattcttcttcgtcatccaattggtccgctgcaaaagcttgtaaggacgggttgtaacccgcttggcctagtgaaattaaatgcagagaccatgataacgatgaagagaagcccgatttgtccacagatgtccatggccattgtaatgccaatgatgtcaaagctaaaagaccctgattatttgattgtcaaaaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="97945" stop="99100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98245" g_stop="98800" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="557" polyA_stop="571"/>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E420549" ref_strand="-">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E420549" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="98245" e_stop="98800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACACTTACTCGATCTCAACAACTTTTGACTTGTTGGTATCTGGTACCGCAATCTCACCACAGGTCAATCTTGAGGTAGCCGCTCTAATAGCTTTAACTATATGACCTCCCAAGGACTTGATATGAATAATTTCACCATCCGTGTTATGTGTATAAAACCTGTTGCCAAATCTGAAGACTACAATCGACACTATCATGGCAATCGAGGGAATGGCGAAACCTAATCCCCATCCTAACGTGTCCTGTATGTACGACATAATGGACACTCCAAGTAGACTGCCACAACATATGCCAAAATACCACCAGTGGAAAAATGTGCTCTTTTTCTTGGAGCTTTGGTCATTCTTTGTACAGGGCAATTCTTCTTCGTCATCCAATTGGTCCGCTGCAAAAGCTTGTAAGGACGGGTTGTAACCCGCTTGGCCTAGTGAAATTAAATGCAGAGACCATGATAACGATGAAGAGAAGCCCGATTTGTCCAAGGATGTCCATGGCCATTGTAATGCCAATGATGTCAAAGCTAAAAGACCCTGATTATTTGATTGTCAAAAAGA</genome_strand>
        <mrna_strand>GAAAAACTTACTCGATCTCAACAACTTTCGACTTGTTGGTATCTGGTACAGCAATCTCACCACAGGTCAATCTTGCGGTAGCCGCTCTAATAGTTTTAACTATATGACCTCCCAAAGACTTGATATGGATAAGTTCACCATCCGTGTTATGTTTATAAAACCTGTTGCCAAATCTGAAGACTACAATTGACACTATCATGGCAATCGAGGGAATGGCGAAACCTAATCCCCATCCTAACGTGTCCTGTATATACGACATAATGGACACTCCAAGTAGGCTGCCACAACATATGCCAAAATACCACCAGTGGAAAAATGTACTCTTTTTCTTGGAGCTCTGGTCATTCTTTGTACAGGGCAATTCTTCTTCGTCATCCAATTGGTCCGCTGCAAAAGCTTGTAAGGACGGGTTGTAACCCGCTTGGCCTAGTGAAATTAAATGCAGAGACCATGATAACGATGAAGAGAAGCCCGATTTGTCCACAGATGTCCATGGCCATTGTAATGCCAATGATGTCAAAGCTAAAAGACCCTGATTATTTGATTGTCAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E219220" ref_strand="+" ref_description="SGN-E219220 [cLEL-11-H19](-)">
      <seq>attagggtgtgctagttcaaggactaccgctgcaactctgttttccacattacaacttcaagatgtagtgtattttggagagatgaaggtagaaattgtcacagttgcggtttgcctagagggtttttgacattgtcagtttgaggcttgagggcttgagaattgttctagctgtaaccacagctacttcagaacacttccagagaagaaggttatgtcactgaaactactggtgctaacagaagatctcatcttatatgaaggagaagtgctttgcacatggttctcttccaagaagatgttaaagtaagtgggatttagaatggttaggtaatattataggcttaagttaaggttgttattagaatttttgttactattaagctaatgatgacacactgctagacagattgtatgcaaatgatgagtctttttgaaacatttgtttttgaaaaaagattttcacgggatggcaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="107110" stop="106032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106810" g_stop="106335" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="477" polyA_stop="494"/>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E219220" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E219220" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106810" e_stop="106335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAGGGTGTGCTAGTTCAAGGACTACCGCTGCAACTCTGTTTTCCACATTACAACTTCAAGATGTAGTGTATTTTGGAGAGATGAAGGTAGAAATTGTCACAGTTGCGGTTTGCCTAGAGGGTTTTTGACATTGTCAGTTTGAGGCTTGAGGGCTTGAGAATTGTTCTAGCTGTAACCACAGCTACTTCAGAACACTTCCAGAGAAGAAGGTTATGTCACTGAAACTACTGGTGCTAACAGAAGATCTCATCTTATATGAAGGAGAAGTGCTTTGCACATGGTTCTCTTCCAAGAAGATGTTAAAGTAAGTGGGATTTAGAATGGTTAGGTAATATTATAGGCTTAAGTTAAGGTTGTTATTAGAATTTTTGTTACTATTAAGCTAATGATGACACACTGCTAGACAGATTGTATGCAAATGATGAGTCTTTTTGAAACATTTGTTTTTGAAAAAAGATTTTCACGGGATGGAAA</genome_strand>
        <mrna_strand>ATTAGGGTGTGCTAGTTCAAGGACTACCGCTGCAACTCTGTTTTCCACATTACAACTTCAAGATGTAGTGTATTTTGGAGAGATGAAGGTAGAAATTGTCACAGTTGCGGTTTGCCTAGAGGGTTTTTGACATTGTCAGTTTGAGGCTTGAGGGCTTGAGAATTGTTCTAGCTGTAACCACAGCTACTTCAGAACACTTCCAGAGAAGAAGGTTATGTCACTGAAACTACTGGTGCTAACAGAAGATCTCATCTTATATGAAGGAGAAGTGCTTTGCACATGGTTCTCTTCCAAGAAGATGTTAAAGTAAGTGGGATTTAGAATGGTTAGGTAATATTATAGGCTTAAGTTAAGGTTGTTATTAGAATTTTTGTTACTATTAAGCTAATGATGACACACTGCTAGACAGATTGTATGCAAATGATGAGTCTTTTTGAAACATTTGTTTTTGAAAAAAGATTTTCACGGGATGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E218015" ref_strand="+" ref_description="SGN-E218015 [cLEL-23-J24](-)">
      <seq>ggtttgcctaaagggtttttgacattgtcagtttgaggcttgagggcttgagaattgttctagctgtaaccacagctacttcagaacacttccaaagaaaaaggttatgtcactgaaactactggtgctaacagaagatctcatcttatatgaaggagaagtgctttgcacatggttctcttccaagaagatgttaaagtaagtgggatttagaatggttaggtaatattataggcttaagttaaggttgttattagaatttttgttactattaagctaatgatgacaccctgctagacagattgtatgcaaatgatgagtctttttgaaacatttgtttttgaaaaaagattttcccgggatggaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="107002" stop="106032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106702" g_stop="106335" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="369" polyA_stop="392"/>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E218015" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106702" e_stop="106335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTGCCTAGAGGGTTTTTGACATTGTCAGTTTGAGGCTTGAGGGCTTGAGAATTGTTCTAGCTGTAACCACAGCTACTTCAGAACACTTCCAGAGAAGAAGGTTATGTCACTGAAACTACTGGTGCTAACAGAAGATCTCATCTTATATGAAGGAGAAGTGCTTTGCACATGGTTCTCTTCCAAGAAGATGTTAAAGTAAGTGGGATTTAGAATGGTTAGGTAATATTATAGGCTTAAGTTAAGGTTGTTATTAGAATTTTTGTTACTATTAAGCTAATGATGACACACTGCTAGACAGATTGTATGCAAATGATGAGTCTTTTTGAAACATTTGTTTTTGAAAAAAGATTTTCACGGGATGGAAA</genome_strand>
        <mrna_strand>GGTTTGCCTAAAGGGTTTTTGACATTGTCAGTTTGAGGCTTGAGGGCTTGAGAATTGTTCTAGCTGTAACCACAGCTACTTCAGAACACTTCCAAAGAAAAAGGTTATGTCACTGAAACTACTGGTGCTAACAGAAGATCTCATCTTATATGAAGGAGAAGTGCTTTGCACATGGTTCTCTTCCAAGAAGATGTTAAAGTAAGTGGGATTTAGAATGGTTAGGTAATATTATAGGCTTAAGTTAAGGTTGTTATTAGAATTTTTGTTACTATTAAGCTAATGATGACACCCTGCTAGACAGATTGTATGCAAATGATGAGTCTTTTTGAAACATTTGTTTTTGAAAAAAGATTTTCCCGGGATGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E217519" ref_strand="+" ref_description="SGN-E217519 [cLEL-21-J22](-)">
      <seq>tgaattagggtgtgctagttcaaggactaccgctgcaactctgttttccacattacaacttcaagatgtagtgtattttggagagatgaaggtagaaattgtcacagttgcggtttgcctagagggtttttgacattgtcagtttgaggcttgagggcttgagaattgttctagctgtaaccacagctacttcagaacacttccagagaagaaggttatgtcactgaaactactggtgctaacagaagatctcatcttatatgaaggagaagtgctttgcacatggttctcttccaagaagatgttaaagtaagtgggatttagaatggttaggtaatattataggcttaagttaaggttgttattagaatttttgttactattaagctaatgatgacacactgctagacagattgtatgcaaatgatgagtctttttgaaacatttgtttttgcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="107113" stop="106052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106813" g_stop="106353" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="462" polyA_stop="473"/>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E217519" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217519" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106813" e_stop="106353"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTAGGGTGTGCTAGTTCAAGGACTACCGCTGCAACTCTGTTTTCCACATTACAACTTCAAGATGTAGTGTATTTTGGAGAGATGAAGGTAGAAATTGTCACAGTTGCGGTTTGCCTAGAGGGTTTTTGACATTGTCAGTTTGAGGCTTGAGGGCTTGAGAATTGTTCTAGCTGTAACCACAGCTACTTCAGAACACTTCCAGAGAAGAAGGTTATGTCACTGAAACTACTGGTGCTAACAGAAGATCTCATCTTATATGAAGGAGAAGTGCTTTGCACATGGTTCTCTTCCAAGAAGATGTTAAAGTAAGTGGGATTTAGAATGGTTAGGTAATATTATAGGCTTAAGTTAAGGTTGTTATTAGAATTTTTGTTACTATTAAGCTAATGATGACACACTGCTAGACAGATTGTATGCAAATGATGAGTCTTTTTGAAACATTTGTTTTTGAAAAAAG</genome_strand>
        <mrna_strand>TGAATTAGGGTGTGCTAGTTCAAGGACTACCGCTGCAACTCTGTTTTCCACATTACAACTTCAAGATGTAGTGTATTTTGGAGAGATGAAGGTAGAAATTGTCACAGTTGCGGTTTGCCTAGAGGGTTTTTGACATTGTCAGTTTGAGGCTTGAGGGCTTGAGAATTGTTCTAGCTGTAACCACAGCTACTTCAGAACACTTCCAGAGAAGAAGGTTATGTCACTGAAACTACTGGTGCTAACAGAAGATCTCATCTTATATGAAGGAGAAGTGCTTTGCACATGGTTCTCTTCCAAGAAGATGTTAAAGTAAGTGGGATTTAGAATGGTTAGGTAATATTATAGGCTTAAGTTAAGGTTGTTATTAGAATTTTTGTTACTATTAAGCTAATGATGACACACTGCTAGACAGATTGTATGCAAATGATGAGTCTTTTTGAAACATTTGTTTTTGCAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E373309" ref_strand="+" ref_description="SGN-E373309 [TUS-31-B15]">
      <seq>caaactacaggtcctcatcctctaaatccgtctcttctatcgcatttggttggtgcccacctaaactatcctcttcatgtattcattgccaagaaatctgaggaaatctctgtacagccaccccctagatccttttctcccctggcagcttctttaccatgtgacttgcatattgtcaacttcaaggttcctcgtcctctcaagtatacccagcaacaatttgaagagcctaggtttgccttagtctttcagagacgacactgggattcttcttactgtagaaaggccaggtcagaatgttcaagtgtagctgatgtgcccgttaatctgttttacatgttcaagaatctggctgtgttgaatgcaaaggctacttctttaaatcttttgcatgatgacatagagatacttggctatggcgaccactttggagatggagctcatgatgggcatgtcctcatttcacccatggaggtacaggcttacaagttggagctaaggccccactagtgaaggtatagatcacttgtatatccttttcccaactgaagctgaattagggtgtgctagttcaaggactaccgctgcaactctgttttccacattacaacttcaagatgtagtgtattttggagagatgaaggtagaaattgtcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="107665" stop="106408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107365" g_stop="106708" g_length="658"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E373309" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373309" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107365" e_stop="106708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTACAGGTCCTCATCCTCTAAATCCGTCTCTTCTATCGCATTTGGTTGGTGCCCACCTAAACTATCCTCTTCATGTATTCATTGCCAAGAAATCTGAGGAAATCTCTGTACAGCCACCCCCTAGATCCTTTTCTCCCCTGGCAGCTTCTTTACCATGTGACTTGCATATTGTCAACTTCAAGGTTCCTCGTCCTCTCAAGTATACCCAGCAACAATTTGAAGAGCCTAGGTTTGCCTTAGTCTTTCAGAGACGACACTGGGATTCTTCTTACTGTAGAAAGGCCAGGTCAGAATGTTCAAGTGTAGCTGATGTGCCCGTTAATCTGTTTTACATGTTCAAGAATCTGGCTGTGTTGAATGCAAAGGCTACTTCTTTAAATCTTTTGCATGATGACATAGAGATACTTGGCTATGGCGACCACTTTGGAGATGGAGCTCATGATGGGCATGTCCTCATTTCACCCATGGAGGTACAGGCTTACAAGTTGGAGCTAAGGCCCCACTAGTGAAGGTATAGATCACTTGTATATCCTTTTCCCAACTGAAGCTGAATTAGGGTGTGCTAGTTCAAGGACTACCGCTGCAACTCTGTTTTCCACATTACAACTTCAAGATGTAGTGTATTTTGGAGAGATGAAGGTAGAAATTGTCACA</genome_strand>
        <mrna_strand>CAAACTACAGGTCCTCATCCTCTAAATCCGTCTCTTCTATCGCATTTGGTTGGTGCCCACCTAAACTATCCTCTTCATGTATTCATTGCCAAGAAATCTGAGGAAATCTCTGTACAGCCACCCCCTAGATCCTTTTCTCCCCTGGCAGCTTCTTTACCATGTGACTTGCATATTGTCAACTTCAAGGTTCCTCGTCCTCTCAAGTATACCCAGCAACAATTTGAAGAGCCTAGGTTTGCCTTAGTCTTTCAGAGACGACACTGGGATTCTTCTTACTGTAGAAAGGCCAGGTCAGAATGTTCAAGTGTAGCTGATGTGCCCGTTAATCTGTTTTACATGTTCAAGAATCTGGCTGTGTTGAATGCAAAGGCTACTTCTTTAAATCTTTTGCATGATGACATAGAGATACTTGGCTATGGCGACCACTTTGGAGATGGAGCTCATGATGGGCATGTCCTCATTTCACCCATGGAGGTACAGGCTTACAAGTTGGAGCTAAGGCCCCACTAGTGAAGGTATAGATCACTTGTATATCCTTTTCCCAACTGAAGCTGAATTAGGGTGTGCTAGTTCAAGGACTACCGCTGCAACTCTGTTTTCCACATTACAACTTCAAGATGTAGTGTATTTTGGAGAGATGAAGGTAGAAATTGTCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E289347" ref_strand="+" ref_description="SGN-E289347 [cLES-18-J22]">
      <seq>caaactacaggtcctcatcctctaaatccgtctcttctatcgcatttggttggtgcccacctaaactatcctcttcatgtattcattgccaagaaatctgaggaaatctctgtacagccaccccctagatccttttctcccctggcagcttctttaccatgtgacttgcatattgtcaacttcaaggttcctcgtcctctcaagtatacccagcaacaatttgaagagcctaggtttgccttagtctttcagagacgacactgggattcttcttactgtagaaaggccaggtcagaatgttcaagtgtagctgatgtgcccgttaatctgttttacatgttcaagaatctggctgtgttgaatgcaaaggctacttctttaaatcttttgcatgatgacatagagatacttggctatggcgacccacttggagatggagctcatgatgggcatgtcctcatttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="107665" stop="106601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107365" g_stop="106901" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="465" r_length="465" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E289347" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107365" e_stop="106901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTACAGGTCCTCATCCTCTAAATCCGTCTCTTCTATCGCATTTGGTTGGTGCCCACCTAAACTATCCTCTTCATGTATTCATTGCCAAGAAATCTGAGGAAATCTCTGTACAGCCACCCCCTAGATCCTTTTCTCCCCTGGCAGCTTCTTTACCATGTGACTTGCATATTGTCAACTTCAAGGTTCCTCGTCCTCTCAAGTATACCCAGCAACAATTTGAAGAGCCTAGGTTTGCCTTAGTCTTTCAGAGACGACACTGGGATTCTTCTTACTGTAGAAAGGCCAGGTCAGAATGTTCAAGTGTAGCTGATGTGCCCGTTAATCTGTTTTACATGTTCAAGAATCTGGCTGTGTTGAATGCAAAGGCTACTTCTTTAAATCTTTTGCATGATGACATAGAGATACTTGGCTATGGCGACCACTTTGGAGATGGAGCTCATGATGGGCATGTCCTCATTTCA</genome_strand>
        <mrna_strand>CAAACTACAGGTCCTCATCCTCTAAATCCGTCTCTTCTATCGCATTTGGTTGGTGCCCACCTAAACTATCCTCTTCATGTATTCATTGCCAAGAAATCTGAGGAAATCTCTGTACAGCCACCCCCTAGATCCTTTTCTCCCCTGGCAGCTTCTTTACCATGTGACTTGCATATTGTCAACTTCAAGGTTCCTCGTCCTCTCAAGTATACCCAGCAACAATTTGAAGAGCCTAGGTTTGCCTTAGTCTTTCAGAGACGACACTGGGATTCTTCTTACTGTAGAAAGGCCAGGTCAGAATGTTCAAGTGTAGCTGATGTGCCCGTTAATCTGTTTTACATGTTCAAGAATCTGGCTGTGTTGAATGCAAAGGCTACTTCTTTAAATCTTTTGCATGATGACATAGAGATACTTGGCTATGGCGACCCACTTGGAGATGGAGCTCATGATGGGCATGTCCTCATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E316478" ref_strand="+" ref_description="SGN-E316478 [cTOA-25-E23]">
      <seq>atcatacaaggtggtgggattatgattatctcggagggccatttggtacaggaggtctattcttacccaaagacagcatgggacaagtctccaatttcccatagcacccgtatatataacggtcacaataccatacaggaacacattattgagaaggagtatcatgttgagcttcttggtcatgaactcaacgacagggaattgatagttaggtacaagactgatattgaaaacaaaaggattttctattctgatctaaatggattccaaatgagccgtagagaatcttatgataagatccctacacagggcaactattacccaataccttccgttgcatttatgcaaggactacatggagagcgcttctctgtccacactaggcagtctttgggtgttgcaagtctcaaggatggatggttagagataatgcttgacaggagattggtaagggatgatggacgtggtctaggccaaggagtgatggataaccgtgcaatgaatgttgttttacatatccttgtggagtctaatgttacagaagcaaaccaaactacaggtcctcatcctctaaatccgtctcttctatcgcatttggttggtgcccacctaaactatcctcttcatgtattcattgccaagaaatctgaggaaatctctgtacagccaccccctagatccttttctcccctggcagcttctttaccatgtgacttgcatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="108214" stop="106892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107914" g_stop="107192" g_length="723"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="723" r_length="723" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E316478" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107914" e_stop="107192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATACAAGGTGGTGGGATTATGATTATCTCGGAGGGCCATTTGGTACAGGAGGTCTATTCTTACCCAAAGACAGCATGGGACAAGTCTCCAATTTCCCATAGCACCCGTATATATAACGGTCACAATACCATACAGGAACACATTATTGAGAAGGAGTATCATGTTGAGCTTCTTGGTCATGAACTCAACGACAGGGAATTGATAGTTAGGTACAAGACTGATATTGAAAACAAAAGGATTTTCTATTCTGATCTAAATGGATTCCAAATGAGCCGTAGAGAATCTTATGATAAGATCCCTACACAGGGCAACTATTACCCAATACCTTCCGTTGCATTTATGCAAGGACTACATGGAGAGCGCTTCTCTGTCCACACTAGGCAGTCTTTGGGTGTTGCAAGTCTCAAGGATGGATGGTTAGAGATAATGCTTGACAGGAGATTGGTAAGGGATGATGGACGTGGTCTAGGCCAAGGAGTGATGGATAACCGTGCAATGAATGTTGTTTTACATATCCTTGTGGAGTCTAATGTTACAGAAGCAAACCAAACTACAGGTCCTCATCCTCTAAATCCGTCTCTTCTATCGCATTTGGTTGGTGCCCACCTAAACTATCCTCTTCATGTATTCATTGCCAAGAAATCTGAGGAAATCTCTGTACAGCCACCCCCTAGATCCTTTTCTCCCCTGGCAGCTTCTTTACCATGTGACTTGCATATT</genome_strand>
        <mrna_strand>ATCATACAAGGTGGTGGGATTATGATTATCTCGGAGGGCCATTTGGTACAGGAGGTCTATTCTTACCCAAAGACAGCATGGGACAAGTCTCCAATTTCCCATAGCACCCGTATATATAACGGTCACAATACCATACAGGAACACATTATTGAGAAGGAGTATCATGTTGAGCTTCTTGGTCATGAACTCAACGACAGGGAATTGATAGTTAGGTACAAGACTGATATTGAAAACAAAAGGATTTTCTATTCTGATCTAAATGGATTCCAAATGAGCCGTAGAGAATCTTATGATAAGATCCCTACACAGGGCAACTATTACCCAATACCTTCCGTTGCATTTATGCAAGGACTACATGGAGAGCGCTTCTCTGTCCACACTAGGCAGTCTTTGGGTGTTGCAAGTCTCAAGGATGGATGGTTAGAGATAATGCTTGACAGGAGATTGGTAAGGGATGATGGACGTGGTCTAGGCCAAGGAGTGATGGATAACCGTGCAATGAATGTTGTTTTACATATCCTTGTGGAGTCTAATGTTACAGAAGCAAACCAAACTACAGGTCCTCATCCTCTAAATCCGTCTCTTCTATCGCATTTGGTTGGTGCCCACCTAAACTATCCTCTTCATGTATTCATTGCCAAGAAATCTGAGGAAATCTCTGTACAGCCACCCCCTAGATCCTTTTCTCCCCTGGCAGCTTCTTTACCATGTGACTTGCATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E316402" ref_strand="+" ref_description="SGN-E316402 [cTOA-25-F23]">
      <seq>atcatacaaggtggtgggattatgattatctcggagggccatttggtacaggaggtctattcttacccaaagacagcatgggacaagtctccaatttcccatagcacccgtatatataacggtcacaataccatacaggaacacattattgagaaggagtatcatgttgagcttcttggtcatgaactcaacgacagggaattgatagttaggtacaagactgatattgaaaacaaaaggattttctattctgatctaaatggattccaaatgagccgtagagaatcttatgataagatccctacacagggcaactattacccaataccttccgttgcatttatgcaaggactacatggagagcgcttctctgtccacactaggcagtctttgggtgttgcaagtctcaaggatggatggttagagataatgcttgacaggagattggtaagggatgatggacgtggtctatgccaacgagtgatggataaccgtgcaatgaatgttgttttacatatccttgtggagtctaatgttacagaagcaaaccanactacaggtcctcatcctctaaatccgtctcttctatcgcatatggttggtgcccacctaaactatcctcttcatgtattcattgccaagaaatctgaggaaatctctgtacagccaccccctagatccttttctcccctggcagcttctttaccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="108214" stop="106905"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107914" g_stop="107205" g_length="710"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="710" r_length="710" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E316402" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107914" e_stop="107205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATACAAGGTGGTGGGATTATGATTATCTCGGAGGGCCATTTGGTACAGGAGGTCTATTCTTACCCAAAGACAGCATGGGACAAGTCTCCAATTTCCCATAGCACCCGTATATATAACGGTCACAATACCATACAGGAACACATTATTGAGAAGGAGTATCATGTTGAGCTTCTTGGTCATGAACTCAACGACAGGGAATTGATAGTTAGGTACAAGACTGATATTGAAAACAAAAGGATTTTCTATTCTGATCTAAATGGATTCCAAATGAGCCGTAGAGAATCTTATGATAAGATCCCTACACAGGGCAACTATTACCCAATACCTTCCGTTGCATTTATGCAAGGACTACATGGAGAGCGCTTCTCTGTCCACACTAGGCAGTCTTTGGGTGTTGCAAGTCTCAAGGATGGATGGTTAGAGATAATGCTTGACAGGAGATTGGTAAGGGATGATGGACGTGGTCTAGGCCAAGGAGTGATGGATAACCGTGCAATGAATGTTGTTTTACATATCCTTGTGGAGTCTAATGTTACAGAAGCAAACCAAACTACAGGTCCTCATCCTCTAAATCCGTCTCTTCTATCGCATTTGGTTGGTGCCCACCTAAACTATCCTCTTCATGTATTCATTGCCAAGAAATCTGAGGAAATCTCTGTACAGCCACCCCCTAGATCCTTTTCTCCCCTGGCAGCTTCTTTACCATG</genome_strand>
        <mrna_strand>ATCATACAAGGTGGTGGGATTATGATTATCTCGGAGGGCCATTTGGTACAGGAGGTCTATTCTTACCCAAAGACAGCATGGGACAAGTCTCCAATTTCCCATAGCACCCGTATATATAACGGTCACAATACCATACAGGAACACATTATTGAGAAGGAGTATCATGTTGAGCTTCTTGGTCATGAACTCAACGACAGGGAATTGATAGTTAGGTACAAGACTGATATTGAAAACAAAAGGATTTTCTATTCTGATCTAAATGGATTCCAAATGAGCCGTAGAGAATCTTATGATAAGATCCCTACACAGGGCAACTATTACCCAATACCTTCCGTTGCATTTATGCAAGGACTACATGGAGAGCGCTTCTCTGTCCACACTAGGCAGTCTTTGGGTGTTGCAAGTCTCAAGGATGGATGGTTAGAGATAATGCTTGACAGGAGATTGGTAAGGGATGATGGACGTGGTCTATGCCAACGAGTGATGGATAACCGTGCAATGAATGTTGTTTTACATATCCTTGTGGAGTCTAATGTTACAGAAGCAAACCANACTACAGGTCCTCATCCTCTAAATCCGTCTCTTCTATCGCATATGGTTGGTGCCCACCTAAACTATCCTCTTCATGTATTCATTGCCAAGAAATCTGAGGAAATCTCTGTACAGCCACCCCCTAGATCCTTTTCTCCCCTGGCAGCTTCTTTACCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E438756" ref_strand="+" ref_description="SGN-E438756 [cSTA-9-B13]">
      <seq>ggcaggcgatcgcggcttggagcataacctaaggagggctataaaggactgatggctttactattacataaatggcaaaaagtacaatgtgaaaaattgcctactggattttcctacaaattgaccgcagcgagaaggaacttggcactttttcagcatcatgatggggtcactggtactgccaaggaccatgtggtgcaggactatggaacacggatgcacttggctctgcaagaccttcaaatttttatgtctaaggctattgaggtgttactagggatccgccatgagaaaaatgaccaacctccttctcagtttgaaccagcacagtcgagatctaaatatgatgcccaaccagtggttaaagccgtcagcgctcgtgaaggaactgttcagacggcggtccttttcaatccatcagagcagacaagaaatgaagttgtcatggtcactgttgagaggccggatgtaacaatcttggactcaaactggacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="109065" stop="108018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108812" g_stop="108318" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="497" r_length="497" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E438756" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E438756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108812" e_stop="108318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAGTTGATCGTGTTTTGGAGCATAACCTTCGCAGTGC-CGAAATG-TTGATGGCTTTCCTATTAGGTTACTGCCAGAGAATACAGTGTGAAAAATTGCCTATTGGATTTTCCTACAAATTGACCGCAGCGAGAAGGAACTTGGCACTTTTTCAGCATCATGATGGGGTCACTGGTACTGCGAAGGACCATGTGGTGCAGGACTATGGAACACGGATGCACTTGGCTCTGCAAGACCTTCAAATTTTTATGTCTAAGGCTATTGAGGTGTTACTAGGGATCCGGCATGATAGAAATGACCAACCTCCTTCTCAGTTTGAACCAGCACAGTCAAGATCTAAATATGATGCCCAACCAGTGGTTAAAGCCATCAGCGCTCGTGAAGGAACTGTTCAGACAGTGGTCCTTTTCAATCCATCAGAGCAGACAAGAAATGAAGTTGTCATGGTAACTGTTGAGAGGCCGGATGTAACAATCTTGGACTCAAACTGGACATG</genome_strand>
        <mrna_strand>GGCAGGCGATCGCGGCTTGGAGCATAACCTAAGGAGGGCTATAAAGGACTGATGGCTTTACTATTACATAAATGGCAAAAAGTACAATGTGAAAAATTGCCTACTGGATTTTCCTACAAATTGACCGCAGCGAGAAGGAACTTGGCACTTTTTCAGCATCATGATGGGGTCACTGGTACTGCCAAGGACCATGTGGTGCAGGACTATGGAACACGGATGCACTTGGCTCTGCAAGACCTTCAAATTTTTATGTCTAAGGCTATTGAGGTGTTACTAGGGATCCGCCATGAGAAAAATGACCAACCTCCTTCTCAGTTTGAACCAGCACAGTCGAGATCTAAATATGATGCCCAACCAGTGGTTAAAGCCGTCAGCGCTCGTGAAGGAACTGTTCAGACGGCGGTCCTTTTCAATCCATCAGAGCAGACAAGAAATGAAGTTGTCATGGTCACTGTTGAGAGGCCGGATGTAACAATCTTGGACTCAAACTGGACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E336835" ref_strand="+" ref_description="SGN-E336835 [cTOE-5-J6]">
      <seq>gacagtccaagcacatcctagatacccttgttgaaacacttccaaaggattcccggagaaaatttatatgggaagagatgtcctatctggagagatggtggagggatgcaaccaacgataagaaagaggcatttaccaatctagtgaggaatgggcagctagaaattgttggaggtggttgggtgatgaatgatgaggctaattcacattactttgcaattattgaacagattacagaaggaaatatgtggttgaatgagactataggtgtaattcctaaaaattcttgggccattgatcccttcggctattcaccaactatggcatatcttttgcggcgtatgggttttgagaacatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="111780" stop="109156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111480" g_stop="111434" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111433" i_stop="111100" i_length="334">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111099" g_stop="110950" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="197" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110949" i_stop="110622" i_length="328">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110621" g_stop="110589" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="230" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110588" i_stop="109586" i_length="1003">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109585" g_stop="109456" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="360" r_length="130" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E336835" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111480" e_stop="111434"/>
          <exon e_start="111099" e_stop="110950"/>
          <exon e_start="110621" e_stop="110589"/>
          <exon e_start="109585" e_stop="109456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAGTCCAAGCACATCCTAGATACCCTTGTTGAAACACTTCCAAAGGTAATTTCAGCGTCAAGTCTAGTGTTAACTTTCATCATGTGATAAATTTAGATCGTTTGGATTGAACTACGATTTTTTAATTTGATCTGATCGCTTTAATTGATCTTGATTTATGTACGAGCTTAAACAATGCTATTTTTCGAGAACCCCTTTATTGATTATTGGAATGAAACTGGGACAAATGGAGCAGAATGATTACTGACATTAGTATAACAGGCCTGGACTAGTTTGAGATTGAGGCATATTAGTAGTGGTATTTGTTGTCATTGCTTATTATGGTATGGATGTTAAATTTCTGAATAACTTGTTGGTTGTTGAATTCTGTTTCTTTTAGGATTCCCGGAGAAAATTTATATGGGAAGAGATGTCCTATCTGGAGAGATGGTGGAGGGATGCAACCAACGATAAGAAAGAGGCATTTACCAATCTAGTGAGGAATGGGCAGCTAGAAATTGTTGGAGGTGGTTGGGTGATGAATGATGAGGTAAACCTCCATTGATGTTATACAGCATTGAAACAATAGAAAATGCGGATTAAAGAAAAAGTCGGAAGTGTTTAAATTTGACAGCTTATTATGAGGGAGACATGATTCTTCCTATAATTGAAGTCGCACTAAGCTTTTTCGGTGCATAATTTGGGTCAAATATTTAAAAGAAATGGCAGGATTATCAGAAAAATTCATTCAAATACAGATGTTTGGATAATTGTAATTGCTTTTGAAGGATTCAAATTTGTTCTGAATAAATGGAGCTTTGGCAATTTTATGCCATAATGGTTGACTTACGCCCTTTCAATTTTTCCCTTTTCTGCAGGCTAATTCACATTACTTTGCAATTATTGAACAGGTAAACAAGAAATTTTCTGTTTATTATTCACTGTCTTGGTATCTTTACATATTTACAAGATCATGCACGTAAGAATTGTATAAACTGAAAAAACAGAGATTATTTTCTCCATTTGGTTGTAATATAGGATATCTAAGCTCTTTTTGCTAATGATTTATAATTTACAACAGATTAGAATACTAGTGTTTGAAATCGAGACTGATATTTCTCTAATTTAGGGTAGTGCTATTGTGATTTTGTCACTCAAAATATTATGTTAGAATTTTTCTCAACATTTTTGTTGTATGGTTGCTTATTGCTGGAATACTTGACATGTAATTATTACTCATTAGATGTATACCGTAAGGAATAGCGTGACATGCAATATTTTAACTCTGGGGTAGATAATAGCTCATTTTGAGAAAATTAATGAGATATAGAAATTCTCATAGAGGCTAGAATTGGATATGAACTGGTAGGTTTTACTTTACATACAAGAACGACAACAACATACCCAATGTAAAATTGATATATTTTACTTTATATATTTATCAAAAAGGATACCGCTTACATATGAAACAGTCACAGCTTAAAACTTTTAAATTCATCCAATCCTTTTCTCTAAAAATATGTTACAGGAAATTTCCTATAGTTATTAATCATTAGATTAACCAATGGGGTATCAGTTATTACAGGCAACTTAATTCTTCTGGTATATGGTATTCATGACAGTTTCAGATTCATTTTTGTAGGTTTTATGTCGTTTGACTAACAATCAAGAAAAGATTCGTTGTTTGACTCTAGTTAGTCACTTGATTGTTGCTAATTTATTTGCCAATCTAACTTGATTTGGATCAACTTTTTTATTGAATTGGAGATGAAGTGTTTTTTCTACCTTGTTTTGCATTTCTTGGTGGTCATTCTGCTTTCTTCTCAATTCATATTGGTCTCATATTCATTTGCTGCTCATTTCATTTTGTACTATTCACTAATCTAGATCTCGATTTTTTGCATTTATGCTCAGATTACAGAAGGAAATATGTGGTTGAATGAGACTATAGGTGTAATTCCTAAAAATTCTTGGGCCATTGATCCCTTCGGCTATTCACCAACTATGGCATATCTTTTGCGGCGTATGGGTTTTGAGAACATGC</genome_strand>
        <mrna_strand>GACAGTCCAAGCACATCCTAGATACCCTTGTTGAAACACTTCCAAAG..............................................................................................................................................................................................................................................................................................................................................GATTCCCGGAGAAAATTTATATGGGAAGAGATGTCCTATCTGGAGAGATGGTGGAGGGATGCAACCAACGATAAGAAAGAGGCATTTACCAATCTAGTGAGGAATGGGCAGCTAGAAATTGTTGGAGGTGGTTGGGTGATGAATGATGAG........................................................................................................................................................................................................................................................................................................................................GCTAATTCACATTACTTTGCAATTATTGAACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACAGAAGGAAATATGTGGTTGAATGAGACTATAGGTGTAATTCCTAAAAATTCTTGGGCCATTGATCCCTTCGGCTATTCACCAACTATGGCATATCTTTTGCGGCGTATGGGTTTTGAGAACATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E338952" ref_strand="+" ref_description="SGN-E338952 [cTOE-21-P2]">
      <seq>agaaaatttatatgggaagagatgtcctatctggagagatggtggagggatgcaaccaacgataagaaagaggcatttaccaatctagtgaggaatgggcagctagaaattgttggaggtggttgggtgatgaatgatgaggctaattcacattactttgcaattattgaacagattacagaaggaaatatgtggttgaatgagactataggtgtaattcctaaaaattcttgggccattgatcccttcggctattcaccaactatggcatatcttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="111390" stop="109181"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111090" g_stop="110950" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110949" i_stop="110622" i_length="328">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110621" g_stop="110589" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="174" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110588" i_stop="109586" i_length="1003">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109585" g_stop="109481" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="279" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E338952" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>279</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338952" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111090" e_stop="110950"/>
          <exon e_start="110621" e_stop="110589"/>
          <exon e_start="109585" e_stop="109481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATTTATATGGGAAGAGATGTCCTATCTGGAGAGATGGTGGAGGGATGCAACCAACGATAAGAAAGAGGCATTTACCAATCTAGTGAGGAATGGGCAGCTAGAAATTGTTGGAGGTGGTTGGGTGATGAATGATGAGGTAAACCTCCATTGATGTTATACAGCATTGAAACAATAGAAAATGCGGATTAAAGAAAAAGTCGGAAGTGTTTAAATTTGACAGCTTATTATGAGGGAGACATGATTCTTCCTATAATTGAAGTCGCACTAAGCTTTTTCGGTGCATAATTTGGGTCAAATATTTAAAAGAAATGGCAGGATTATCAGAAAAATTCATTCAAATACAGATGTTTGGATAATTGTAATTGCTTTTGAAGGATTCAAATTTGTTCTGAATAAATGGAGCTTTGGCAATTTTATGCCATAATGGTTGACTTACGCCCTTTCAATTTTTCCCTTTTCTGCAGGCTAATTCACATTACTTTGCAATTATTGAACAGGTAAACAAGAAATTTTCTGTTTATTATTCACTGTCTTGGTATCTTTACATATTTACAAGATCATGCACGTAAGAATTGTATAAACTGAAAAAACAGAGATTATTTTCTCCATTTGGTTGTAATATAGGATATCTAAGCTCTTTTTGCTAATGATTTATAATTTACAACAGATTAGAATACTAGTGTTTGAAATCGAGACTGATATTTCTCTAATTTAGGGTAGTGCTATTGTGATTTTGTCACTCAAAATATTATGTTAGAATTTTTCTCAACATTTTTGTTGTATGGTTGCTTATTGCTGGAATACTTGACATGTAATTATTACTCATTAGATGTATACCGTAAGGAATAGCGTGACATGCAATATTTTAACTCTGGGGTAGATAATAGCTCATTTTGAGAAAATTAATGAGATATAGAAATTCTCATAGAGGCTAGAATTGGATATGAACTGGTAGGTTTTACTTTACATACAAGAACGACAACAACATACCCAATGTAAAATTGATATATTTTACTTTATATATTTATCAAAAAGGATACCGCTTACATATGAAACAGTCACAGCTTAAAACTTTTAAATTCATCCAATCCTTTTCTCTAAAAATATGTTACAGGAAATTTCCTATAGTTATTAATCATTAGATTAACCAATGGGGTATCAGTTATTACAGGCAACTTAATTCTTCTGGTATATGGTATTCATGACAGTTTCAGATTCATTTTTGTAGGTTTTATGTCGTTTGACTAACAATCAAGAAAAGATTCGTTGTTTGACTCTAGTTAGTCACTTGATTGTTGCTAATTTATTTGCCAATCTAACTTGATTTGGATCAACTTTTTTATTGAATTGGAGATGAAGTGTTTTTTCTACCTTGTTTTGCATTTCTTGGTGGTCATTCTGCTTTCTTCTCAATTCATATTGGTCTCATATTCATTTGCTGCTCATTTCATTTTGTACTATTCACTAATCTAGATCTCGATTTTTTGCATTTATGCTCAGATTACAGAAGGAAATATGTGGTTGAATGAGACTATAGGTGTAATTCCTAAAAATTCTTGGGCCATTGATCCCTTCGGCTATTCACCAACTATGGCATATCTTTTG</genome_strand>
        <mrna_strand>AGAAAATTTATATGGGAAGAGATGTCCTATCTGGAGAGATGGTGGAGGGATGCAACCAACGATAAGAAAGAGGCATTTACCAATCTAGTGAGGAATGGGCAGCTAGAAATTGTTGGAGGTGGTTGGGTGATGAATGATGAG........................................................................................................................................................................................................................................................................................................................................GCTAATTCACATTACTTTGCAATTATTGAACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACAGAAGGAAATATGTGGTTGAATGAGACTATAGGTGTAATTCCTAAAAATTCTTGGGCCATTGATCCCTTCGGCTATTCACCAACTATGGCATATCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E707559" ref_strand="+" ref_description="SGN-E707559 [FA33BD10]">
      <seq>cagttaaaacacttaaattatcaacccctctctctctctctctccagcttcgacgcgaagaagccattctcctctctatcgtgtttgcatccagaatttttctgttacagtagctgtgagatatcagtagcggcaacagaaaatgccagcccagaagattgaaactggtcacaatgacacagttcacgatgttactatggactattatggaaaacgtgtggctacagcatcttctgataccaccataaaaataactggtgtgagcaacaatgctgcttcgcaacaccttgctacgttgagtggccatacgggccctgtttggcaggctggctgggctcaccccaaatttggctcaatccttgcgtcctgttcctatgatggtaaggtaataatctggaaggaaggcaatcagaatgagtgggcacaagctcatgtttttagcgagcacaaatcatcggttaattccatctcctgggctcctcatgaacttgggctttgcttggcttgtggttcttctgatggtaatatttcagtgcacaccgccaggtcagatggtggttgggacactacaagaattgaccaagctcatccagttggggtaacatcagtttcatgggcgccttcaatggctcctggtgctttagttggtgcaggtgtgcttgaacctgttcaaaagctggcatctggtggatgtgataacactgttaaagtttggaagttgtataatggtgtttggaagatggattgcttccctgcacttcagatgcacactaactgggtgagagatgtagcttgggcaccaaacttgggacttccaaagtcaacaattgctagtgcttcaaaaggatggtacggttgtcatatggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="113251" stop="116908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113545" g_stop="113655" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113656" i_stop="115851" i_length="2196">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115852" g_stop="116608" g_length="757"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="868" r_length="758" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E707559" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>868</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113545" e_stop="113655"/>
          <exon e_start="115852" e_stop="116608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTAAAAAACACTTAAATTATCAACCCCTCTCTCTCTCTCTCTCCAGCTTCGACGCGAAGAAGCCATTCTCCTCTCTATCGTGTTTGCATCCAGAATTTTTCTGTTACAGGTAAAACAATCCCTTTTTCCCCTTCATTTGCTTACAATTGAGATCTGTATTTGAGCATTATTTTTGCATTCGCTTTATTCGGTTTGGGTCTACCCGGTTTAAGATCCACGCAGAAATCCCAGATCTAGTTTGGCATGTATCTTTTTTATTTGTTTTGGTACCCTCAATGGATGTAATTTCGCCCATATGTATCGTTTTTAGCTAATACCGTTCTGTTTTATGTGTCTGATCTTCGGCGATCCGCGAATTGGTTGTTTATTATCCGGAAATCCTAATCTGAATTTTGGGGGAAAGCGGCTTAGAATCGGATCAGTTTCGATTCAATATTACATTAAGGTATGCCGGAGAAATGAATAGAAGTAGGAAATAGAAGATGAAAGATTGTTGCTTTTTATAAGACAATAGTGCAAACCATTTTTAACTGGGGTTAAACTGTCTTAGAACCTCGTGTGTTAGTAGTAAAGAATTCTGAAGTAGACACATCTTATTGAGCATGGAGAAGTATAAGGAATCCCAGTTTTGCTCTTGGGAATTGCTTGTTTCCCCTCCCCAAGTGTTTTATGGTATCTTTGTGTTAATTGATCGACTGTTTAAGTATCCTTGTCTTTATGGTATCTTTATGTTAATTGATTGACTGTTTATGTATCTTTGTCTTATGCGGTAAACTATAGAGTAGAGGTCTTGTAAGTACTGTAAGATCTTGTAGCAATTGTTTTTTGCTGAGGGCTTGAGTATTTATTAGGGAATAGATGTGGAAGCTTATAACTTGTTGGACTTTTGCATCTTCTGCAATAAGGGTTTTCTTTAAATGTTACCAATAGGATCAATTTCTCTGCCATATTATTGTCCACAAACAAGATATTCTATTTCTTCTCTTGGCTTAGTGTGGGAAGCTATTGAAACACTACCCAAAGAGATCTAGCAGAACAGATAAAAATGTGTCTATTTAGTTTTCTACAATTGATGAAAGCATAGGTAGATTTGAAGTCTAGTTATGTCCCATGAAGGAAATCTTCTATAATCTGCTATATTTATATCTATGAAAACCCTTTCTTATTTCATGACTCATGCTTATATAATAATATAAACCTTTATTGGAAGTCATCTCTAAAAAAATTTATCATTGTTATCCACTCTGCATAGTAGTCAATTTAGGAGAATCACTTATGTTGGAAAACATAGTTATATTATATTCAGGAGTATCCTAATGAATTTAGCTGATATTTCACAATAATATTATCTTTGATTGGATCGATGATCAATTTAGTATTTTCATCTCAATGGAGTACCTTTGCAGTTAATAGCAGTCTTGTCTGCAACGCAAGGACATTGGAACACTTACGAGTATTATGTTAAAAAAAGAGTGTAGAAGCCAACTCTAATATTTGTTACTAAAACTAGGAATCCTGATCTGGGCATCTTAACTAATTATTGGTGAGAGCAACAAGTAGAATACTGGGGTAGAGGAGAGGATTTGGATTTGCACTTTTGGGCCCATAGACTATCTAGTCATTAGCTAGTTTTAGTTATCAAGTACTTTGGTGTGTACTTTGTTGCCTTAAAAATCTCTTTCCATCTTAAAAGGGTTTATGAATTAAGCTACATTCTTTTCCTGTAGTAATTTCCCTATTATGTATAGATATATTGGATCAATTGAATGCTGAATATGAGTTATATGTTAGCTAATCCATATTGTGTTTAGATTCTTTGCCTCCTCAAATCAACTCCTATTACCTTTTAGTTACTTTTGACCTATTTAATCCTTCCCCCCTTCCCCTTTTGCAAATATAACATGTTCAGCAATAAACCATTTGTCTTTTCTTCATTATGCCTGCATTTATGATAAAGGGGAAGGTTTCTACTATATCTTTCTCTCTGGTGTATTGAAACGAACAAGCTCAAAACCATGACACGAGAAGCTCATAATATTATTTTCTCTAAAAAAATTGTATTTGCAAAGATTAATTCACCTGAAGGCTCTTATGTTATTACTTTGGCTTATTTACAATATATACATTTTTTTAAGTTTGTTTGTTGTTTGAGTTGCATTTCTGTTCTTAGGCTTTTGAACTGATTTTGGAAGAAGAGTCTCTCTTCTTTTCTAACCAAACAGGGGGTGGGGAATAGGTATTCTCTTCAATGTTTTATCTTTTTAACTGACATCTATACTAACATTGTATATGAGCATAAATGCAGTAGCTGTGAGATATCAGTAGCGGCAACAGAAAATGCCAGCCCAGAAGATTGAAACTGGTCACAATGACACAGTTCACGATGTTACTATGGACTATTATGGAAAACGTGTGGCTACAGCATCTTCTGATACCACCATAAAAATAACTGGTGTGAGCAACAATGCTGCTTCGCAACACCTTGCTACGTTGAGTGGCCATACGGGCCCTGTTTGGCAGGCTGGCTGGGCTCACCCCAAATTTGGCTCAATCCTTGCGTCCTGTTCCTATGATGGTAAGGTAATAATCTGGAAGGAAGGCAATCAGAATGAGTGGGCACAAGCTCATGTTTTTAGCGAGCACAAATCATCGGTTAATTCCATCTCCTGGGCTCCTCATGAACTTGGGCTTTGCTTGGCTTGTGGTTCTTCTGATGGTAATATTTCAGTGCACACCGCCAGGTCAGATGGTGGTTGGGACACTACAAGAATTGACCAAGCTCATCCAGTTGGGGTAACATCAGTTTCATGGGCGCCTTCAATGGCTCCTGGTGCTTTAGTTGGTGCAGGTGTGCTTGAACCTGTTCAAAAGCTGGCATCTGGTGGATGTGATAACACTGTTAAAGTTTGGAAGTTGTATAATGGTGTTTGGAAGATGGATTGCTTCCCTGCACTTCAGATGCACACTAACTGGGTGAGAGATGTAGCTTGGGCACCAAACTTGGGACTTCCAAAGTCAACAATTGCTAGTGCTTC-AGAGGATGGTACGGTTGTCATATGGAC</genome_strand>
        <mrna_strand>CAGTTAA-AACACTTAAATTATCAACCCCTCTCTCTCTCTCTCTCCAGCTTCGACGCGAAGAAGCCATTCTCCTCTCTATCGTGTTTGCATCCAGAATTTTTCTGTTACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCTGTGAGATATCAGTAGCGGCAACAGAAAATGCCAGCCCAGAAGATTGAAACTGGTCACAATGACACAGTTCACGATGTTACTATGGACTATTATGGAAAACGTGTGGCTACAGCATCTTCTGATACCACCATAAAAATAACTGGTGTGAGCAACAATGCTGCTTCGCAACACCTTGCTACGTTGAGTGGCCATACGGGCCCTGTTTGGCAGGCTGGCTGGGCTCACCCCAAATTTGGCTCAATCCTTGCGTCCTGTTCCTATGATGGTAAGGTAATAATCTGGAAGGAAGGCAATCAGAATGAGTGGGCACAAGCTCATGTTTTTAGCGAGCACAAATCATCGGTTAATTCCATCTCCTGGGCTCCTCATGAACTTGGGCTTTGCTTGGCTTGTGGTTCTTCTGATGGTAATATTTCAGTGCACACCGCCAGGTCAGATGGTGGTTGGGACACTACAAGAATTGACCAAGCTCATCCAGTTGGGGTAACATCAGTTTCATGGGCGCCTTCAATGGCTCCTGGTGCTTTAGTTGGTGCAGGTGTGCTTGAACCTGTTCAAAAGCTGGCATCTGGTGGATGTGATAACACTGTTAAAGTTTGGAAGTTGTATAATGGTGTTTGGAAGATGGATTGCTTCCCTGCACTTCAGATGCACACTAACTGGGTGAGAGATGTAGCTTGGGCACCAAACTTGGGACTTCCAAAGTCAACAATTGCTAGTGCTTCAAAAGGATGGTACGGTTGTCATATGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E303853" ref_strand="+" ref_description="SGN-E303853 [cLEX-4-C9]">
      <seq>aattatcaacccctctctctctctctctccagcttcgacgcgaagaagccattctcctctctatcgtgtttgcatccacaatttttctgttacagtagctgtgagatatcagtagcggcaacagaaaatgccagcccagaagattgaaactggtcacaatgacacagttcacgatgttactatggactattatggaaaacgtgtggctacagcatcttctgataccaccataaaaataactggtgtgagcaacaatgctgcttcgcaacaccttgctacgttgagtggccatacgggccctgtttggcaggctggctgggctcaccccaaatttggctcaatccttgcgtcctgttcctatgatggtaaggtaataatctggaaggaaggcaatcagaatgagtgggcacaagctcatgtttttagcgagcacaaatcatcggttaattccatctcctgggctcctcatgaacttgggctttgcttggcttgaggctcttctgatggtaatatttcagtgcacaccgccaggtcagatggtggttgggacacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="113261" stop="116610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113561" g_stop="113655" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113656" i_stop="115851" i_length="2196">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115852" g_stop="116310" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="554" r_length="459" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E303853" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113561" e_stop="113655"/>
          <exon e_start="115852" e_stop="116310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATCAACCCCTCTCTCTCTCTCTCTCCAGCTTCGACGCGAAGAAGCCATTCTCCTCTCTATCGTGTTTGCATCCAGAATTTTTCTGTTACAGGTAAAACAATCCCTTTTTCCCCTTCATTTGCTTACAATTGAGATCTGTATTTGAGCATTATTTTTGCATTCGCTTTATTCGGTTTGGGTCTACCCGGTTTAAGATCCACGCAGAAATCCCAGATCTAGTTTGGCATGTATCTTTTTTATTTGTTTTGGTACCCTCAATGGATGTAATTTCGCCCATATGTATCGTTTTTAGCTAATACCGTTCTGTTTTATGTGTCTGATCTTCGGCGATCCGCGAATTGGTTGTTTATTATCCGGAAATCCTAATCTGAATTTTGGGGGAAAGCGGCTTAGAATCGGATCAGTTTCGATTCAATATTACATTAAGGTATGCCGGAGAAATGAATAGAAGTAGGAAATAGAAGATGAAAGATTGTTGCTTTTTATAAGACAATAGTGCAAACCATTTTTAACTGGGGTTAAACTGTCTTAGAACCTCGTGTGTTAGTAGTAAAGAATTCTGAAGTAGACACATCTTATTGAGCATGGAGAAGTATAAGGAATCCCAGTTTTGCTCTTGGGAATTGCTTGTTTCCCCTCCCCAAGTGTTTTATGGTATCTTTGTGTTAATTGATCGACTGTTTAAGTATCCTTGTCTTTATGGTATCTTTATGTTAATTGATTGACTGTTTATGTATCTTTGTCTTATGCGGTAAACTATAGAGTAGAGGTCTTGTAAGTACTGTAAGATCTTGTAGCAATTGTTTTTTGCTGAGGGCTTGAGTATTTATTAGGGAATAGATGTGGAAGCTTATAACTTGTTGGACTTTTGCATCTTCTGCAATAAGGGTTTTCTTTAAATGTTACCAATAGGATCAATTTCTCTGCCATATTATTGTCCACAAACAAGATATTCTATTTCTTCTCTTGGCTTAGTGTGGGAAGCTATTGAAACACTACCCAAAGAGATCTAGCAGAACAGATAAAAATGTGTCTATTTAGTTTTCTACAATTGATGAAAGCATAGGTAGATTTGAAGTCTAGTTATGTCCCATGAAGGAAATCTTCTATAATCTGCTATATTTATATCTATGAAAACCCTTTCTTATTTCATGACTCATGCTTATATAATAATATAAACCTTTATTGGAAGTCATCTCTAAAAAAATTTATCATTGTTATCCACTCTGCATAGTAGTCAATTTAGGAGAATCACTTATGTTGGAAAACATAGTTATATTATATTCAGGAGTATCCTAATGAATTTAGCTGATATTTCACAATAATATTATCTTTGATTGGATCGATGATCAATTTAGTATTTTCATCTCAATGGAGTACCTTTGCAGTTAATAGCAGTCTTGTCTGCAACGCAAGGACATTGGAACACTTACGAGTATTATGTTAAAAAAAGAGTGTAGAAGCCAACTCTAATATTTGTTACTAAAACTAGGAATCCTGATCTGGGCATCTTAACTAATTATTGGTGAGAGCAACAAGTAGAATACTGGGGTAGAGGAGAGGATTTGGATTTGCACTTTTGGGCCCATAGACTATCTAGTCATTAGCTAGTTTTAGTTATCAAGTACTTTGGTGTGTACTTTGTTGCCTTAAAAATCTCTTTCCATCTTAAAAGGGTTTATGAATTAAGCTACATTCTTTTCCTGTAGTAATTTCCCTATTATGTATAGATATATTGGATCAATTGAATGCTGAATATGAGTTATATGTTAGCTAATCCATATTGTGTTTAGATTCTTTGCCTCCTCAAATCAACTCCTATTACCTTTTAGTTACTTTTGACCTATTTAATCCTTCCCCCCTTCCCCTTTTGCAAATATAACATGTTCAGCAATAAACCATTTGTCTTTTCTTCATTATGCCTGCATTTATGATAAAGGGGAAGGTTTCTACTATATCTTTCTCTCTGGTGTATTGAAACGAACAAGCTCAAAACCATGACACGAGAAGCTCATAATATTATTTTCTCTAAAAAAATTGTATTTGCAAAGATTAATTCACCTGAAGGCTCTTATGTTATTACTTTGGCTTATTTACAATATATACATTTTTTTAAGTTTGTTTGTTGTTTGAGTTGCATTTCTGTTCTTAGGCTTTTGAACTGATTTTGGAAGAAGAGTCTCTCTTCTTTTCTAACCAAACAGGGGGTGGGGAATAGGTATTCTCTTCAATGTTTTATCTTTTTAACTGACATCTATACTAACATTGTATATGAGCATAAATGCAGTAGCTGTGAGATATCAGTAGCGGCAACAGAAAATGCCAGCCCAGAAGATTGAAACTGGTCACAATGACACAGTTCACGATGTTACTATGGACTATTATGGAAAACGTGTGGCTACAGCATCTTCTGATACCACCATAAAAATAACTGGTGTGAGCAACAATGCTGCTTCGCAACACCTTGCTACGTTGAGTGGCCATACGGGCCCTGTTTGGCAGGCTGGCTGGGCTCACCCCAAATTTGGCTCAATCCTTGCGTCCTGTTCCTATGATGGTAAGGTAATAATCTGGAAGGAAGGCAATCAGAATGAGTGGGCACAAGCTCATGTTTTTAGCGAGCACAAATCATCGGTTAATTCCATCTCCTGGGCTCCTCATGAACTTGGGCTTTGCTTGGCTTGTGGTTCTTCTGATGGTAATATTTCAGTGCACACCGCCAGGTCAGATGGTGGTTGGGACACTA</genome_strand>
        <mrna_strand>AATTATCAACCCCTCTCTCTCTCTCTCTCCAGCTTCGACGCGAAGAAGCCATTCTCCTCTCTATCGTGTTTGCATCCACAATTTTTCTGTTACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCTGTGAGATATCAGTAGCGGCAACAGAAAATGCCAGCCCAGAAGATTGAAACTGGTCACAATGACACAGTTCACGATGTTACTATGGACTATTATGGAAAACGTGTGGCTACAGCATCTTCTGATACCACCATAAAAATAACTGGTGTGAGCAACAATGCTGCTTCGCAACACCTTGCTACGTTGAGTGGCCATACGGGCCCTGTTTGGCAGGCTGGCTGGGCTCACCCCAAATTTGGCTCAATCCTTGCGTCCTGTTCCTATGATGGTAAGGTAATAATCTGGAAGGAAGGCAATCAGAATGAGTGGGCACAAGCTCATGTTTTTAGCGAGCACAAATCATCGGTTAATTCCATCTCCTGGGCTCCTCATGAACTTGGGCTTTGCTTGGCTTGAGGCTCTTCTGATGGTAATATTTCAGTGCACACCGCCAGGTCAGATGGTGGTTGGGACACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E339538" ref_strand="+" ref_description="SGN-E339538 [cTOE-16-E4]">
      <seq>aattatcaacccctctctctctctctctccagcttcgacgcgaagaagccattctcctctctatcgtgtttgcatccagaatttttctgttacagtagctgtgagatatcagtagcggcaacagaaaatgccagcccagaagattgaaactggtcacaatgacacagttcacgatgttactatggactattatggaaaacgtgtggctacagcatcttctgataccaccataaaaataactggtgtgagcaacaatgctgcttcgcaacaccttgctacgttgagtggccatacgggccctgtttggcaggctggctgggctcaccccaaatttggctcaatccttgcgtcctgttcctatgatggtaaggtaataatctggaaggaaggcaatcagaatgagtgggcacaagctcatgtttttagcgagcacaaatcatcggttaattccatctcctgggctcctcatgaacttgggctttgcttggcttgtggttcttctgatggtaatatttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="113261" stop="116573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113561" g_stop="113655" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113656" i_stop="115851" i_length="2196">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115852" g_stop="116273" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="517" r_length="422" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E339538" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113561" e_stop="113655"/>
          <exon e_start="115852" e_stop="116273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATCAACCCCTCTCTCTCTCTCTCTCCAGCTTCGACGCGAAGAAGCCATTCTCCTCTCTATCGTGTTTGCATCCAGAATTTTTCTGTTACAGGTAAAACAATCCCTTTTTCCCCTTCATTTGCTTACAATTGAGATCTGTATTTGAGCATTATTTTTGCATTCGCTTTATTCGGTTTGGGTCTACCCGGTTTAAGATCCACGCAGAAATCCCAGATCTAGTTTGGCATGTATCTTTTTTATTTGTTTTGGTACCCTCAATGGATGTAATTTCGCCCATATGTATCGTTTTTAGCTAATACCGTTCTGTTTTATGTGTCTGATCTTCGGCGATCCGCGAATTGGTTGTTTATTATCCGGAAATCCTAATCTGAATTTTGGGGGAAAGCGGCTTAGAATCGGATCAGTTTCGATTCAATATTACATTAAGGTATGCCGGAGAAATGAATAGAAGTAGGAAATAGAAGATGAAAGATTGTTGCTTTTTATAAGACAATAGTGCAAACCATTTTTAACTGGGGTTAAACTGTCTTAGAACCTCGTGTGTTAGTAGTAAAGAATTCTGAAGTAGACACATCTTATTGAGCATGGAGAAGTATAAGGAATCCCAGTTTTGCTCTTGGGAATTGCTTGTTTCCCCTCCCCAAGTGTTTTATGGTATCTTTGTGTTAATTGATCGACTGTTTAAGTATCCTTGTCTTTATGGTATCTTTATGTTAATTGATTGACTGTTTATGTATCTTTGTCTTATGCGGTAAACTATAGAGTAGAGGTCTTGTAAGTACTGTAAGATCTTGTAGCAATTGTTTTTTGCTGAGGGCTTGAGTATTTATTAGGGAATAGATGTGGAAGCTTATAACTTGTTGGACTTTTGCATCTTCTGCAATAAGGGTTTTCTTTAAATGTTACCAATAGGATCAATTTCTCTGCCATATTATTGTCCACAAACAAGATATTCTATTTCTTCTCTTGGCTTAGTGTGGGAAGCTATTGAAACACTACCCAAAGAGATCTAGCAGAACAGATAAAAATGTGTCTATTTAGTTTTCTACAATTGATGAAAGCATAGGTAGATTTGAAGTCTAGTTATGTCCCATGAAGGAAATCTTCTATAATCTGCTATATTTATATCTATGAAAACCCTTTCTTATTTCATGACTCATGCTTATATAATAATATAAACCTTTATTGGAAGTCATCTCTAAAAAAATTTATCATTGTTATCCACTCTGCATAGTAGTCAATTTAGGAGAATCACTTATGTTGGAAAACATAGTTATATTATATTCAGGAGTATCCTAATGAATTTAGCTGATATTTCACAATAATATTATCTTTGATTGGATCGATGATCAATTTAGTATTTTCATCTCAATGGAGTACCTTTGCAGTTAATAGCAGTCTTGTCTGCAACGCAAGGACATTGGAACACTTACGAGTATTATGTTAAAAAAAGAGTGTAGAAGCCAACTCTAATATTTGTTACTAAAACTAGGAATCCTGATCTGGGCATCTTAACTAATTATTGGTGAGAGCAACAAGTAGAATACTGGGGTAGAGGAGAGGATTTGGATTTGCACTTTTGGGCCCATAGACTATCTAGTCATTAGCTAGTTTTAGTTATCAAGTACTTTGGTGTGTACTTTGTTGCCTTAAAAATCTCTTTCCATCTTAAAAGGGTTTATGAATTAAGCTACATTCTTTTCCTGTAGTAATTTCCCTATTATGTATAGATATATTGGATCAATTGAATGCTGAATATGAGTTATATGTTAGCTAATCCATATTGTGTTTAGATTCTTTGCCTCCTCAAATCAACTCCTATTACCTTTTAGTTACTTTTGACCTATTTAATCCTTCCCCCCTTCCCCTTTTGCAAATATAACATGTTCAGCAATAAACCATTTGTCTTTTCTTCATTATGCCTGCATTTATGATAAAGGGGAAGGTTTCTACTATATCTTTCTCTCTGGTGTATTGAAACGAACAAGCTCAAAACCATGACACGAGAAGCTCATAATATTATTTTCTCTAAAAAAATTGTATTTGCAAAGATTAATTCACCTGAAGGCTCTTATGTTATTACTTTGGCTTATTTACAATATATACATTTTTTTAAGTTTGTTTGTTGTTTGAGTTGCATTTCTGTTCTTAGGCTTTTGAACTGATTTTGGAAGAAGAGTCTCTCTTCTTTTCTAACCAAACAGGGGGTGGGGAATAGGTATTCTCTTCAATGTTTTATCTTTTTAACTGACATCTATACTAACATTGTATATGAGCATAAATGCAGTAGCTGTGAGATATCAGTAGCGGCAACAGAAAATGCCAGCCCAGAAGATTGAAACTGGTCACAATGACACAGTTCACGATGTTACTATGGACTATTATGGAAAACGTGTGGCTACAGCATCTTCTGATACCACCATAAAAATAACTGGTGTGAGCAACAATGCTGCTTCGCAACACCTTGCTACGTTGAGTGGCCATACGGGCCCTGTTTGGCAGGCTGGCTGGGCTCACCCCAAATTTGGCTCAATCCTTGCGTCCTGTTCCTATGATGGTAAGGTAATAATCTGGAAGGAAGGCAATCAGAATGAGTGGGCACAAGCTCATGTTTTTAGCGAGCACAAATCATCGGTTAATTCCATCTCCTGGGCTCCTCATGAACTTGGGCTTTGCTTGGCTTGTGGTTCTTCTGATGGTAATATTTCA</genome_strand>
        <mrna_strand>AATTATCAACCCCTCTCTCTCTCTCTCTCCAGCTTCGACGCGAAGAAGCCATTCTCCTCTCTATCGTGTTTGCATCCAGAATTTTTCTGTTACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCTGTGAGATATCAGTAGCGGCAACAGAAAATGCCAGCCCAGAAGATTGAAACTGGTCACAATGACACAGTTCACGATGTTACTATGGACTATTATGGAAAACGTGTGGCTACAGCATCTTCTGATACCACCATAAAAATAACTGGTGTGAGCAACAATGCTGCTTCGCAACACCTTGCTACGTTGAGTGGCCATACGGGCCCTGTTTGGCAGGCTGGCTGGGCTCACCCCAAATTTGGCTCAATCCTTGCGTCCTGTTCCTATGATGGTAAGGTAATAATCTGGAAGGAAGGCAATCAGAATGAGTGGGCACAAGCTCATGTTTTTAGCGAGCACAAATCATCGGTTAATTCCATCTCCTGGGCTCCTCATGAACTTGGGCTTTGCTTGGCTTGTGGTTCTTCTGATGGTAATATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E483183" ref_strand="+" ref_description="SGN-E483183 [cSTE-8-E2]">
      <seq>cccctctctctctctccagcttcgacgcgaacaagccattctcctctctatcgtgtttgcatccagaatttttctgttacaggagctgtgagatatcagtagcggcaacagaaaatgccagcccagaagattgaaactggtcacaatgacacagttcacgatgttactatggactattatggaaaacgtgtggctacagcatcttctgataccaccataaaaataactggtgtgagcaacaatgctacttcacaacaccttgctactttgagtggtcataccggccctgtttggcaggctgcctgggctcaccccaaatttggctcaatccttgcgtcctgttcctatgatggtaaggtaataatctggaaggaaggcaatcatatgtagtggacacaagctcatgtttttagcgagcacaaatcatcggttaattccatctcctgggctcctcatgaacttgggctttgcttggcttgtggttcttctgatggtaatatgtcagtgcataccgccaggtcagatggtggttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="113275" stop="116604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113574" g_stop="113655" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113656" i_stop="115851" i_length="2196">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115852" g_stop="116304" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="535" r_length="453" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E483183" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E483183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113574" e_stop="113655"/>
          <exon e_start="115852" e_stop="116304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTCTCTCTCTCCAGCTTCGACGCGAAGAAGCCATTCTCCTCTCTATCGTGTTTGCATCCAGAATTTTTCTGTTACAGGTAAAACAATCCCTTTTTCCCCTTCATTTGCTTACAATTGAGATCTGTATTTGAGCATTATTTTTGCATTCGCTTTATTCGGTTTGGGTCTACCCGGTTTAAGATCCACGCAGAAATCCCAGATCTAGTTTGGCATGTATCTTTTTTATTTGTTTTGGTACCCTCAATGGATGTAATTTCGCCCATATGTATCGTTTTTAGCTAATACCGTTCTGTTTTATGTGTCTGATCTTCGGCGATCCGCGAATTGGTTGTTTATTATCCGGAAATCCTAATCTGAATTTTGGGGGAAAGCGGCTTAGAATCGGATCAGTTTCGATTCAATATTACATTAAGGTATGCCGGAGAAATGAATAGAAGTAGGAAATAGAAGATGAAAGATTGTTGCTTTTTATAAGACAATAGTGCAAACCATTTTTAACTGGGGTTAAACTGTCTTAGAACCTCGTGTGTTAGTAGTAAAGAATTCTGAAGTAGACACATCTTATTGAGCATGGAGAAGTATAAGGAATCCCAGTTTTGCTCTTGGGAATTGCTTGTTTCCCCTCCCCAAGTGTTTTATGGTATCTTTGTGTTAATTGATCGACTGTTTAAGTATCCTTGTCTTTATGGTATCTTTATGTTAATTGATTGACTGTTTATGTATCTTTGTCTTATGCGGTAAACTATAGAGTAGAGGTCTTGTAAGTACTGTAAGATCTTGTAGCAATTGTTTTTTGCTGAGGGCTTGAGTATTTATTAGGGAATAGATGTGGAAGCTTATAACTTGTTGGACTTTTGCATCTTCTGCAATAAGGGTTTTCTTTAAATGTTACCAATAGGATCAATTTCTCTGCCATATTATTGTCCACAAACAAGATATTCTATTTCTTCTCTTGGCTTAGTGTGGGAAGCTATTGAAACACTACCCAAAGAGATCTAGCAGAACAGATAAAAATGTGTCTATTTAGTTTTCTACAATTGATGAAAGCATAGGTAGATTTGAAGTCTAGTTATGTCCCATGAAGGAAATCTTCTATAATCTGCTATATTTATATCTATGAAAACCCTTTCTTATTTCATGACTCATGCTTATATAATAATATAAACCTTTATTGGAAGTCATCTCTAAAAAAATTTATCATTGTTATCCACTCTGCATAGTAGTCAATTTAGGAGAATCACTTATGTTGGAAAACATAGTTATATTATATTCAGGAGTATCCTAATGAATTTAGCTGATATTTCACAATAATATTATCTTTGATTGGATCGATGATCAATTTAGTATTTTCATCTCAATGGAGTACCTTTGCAGTTAATAGCAGTCTTGTCTGCAACGCAAGGACATTGGAACACTTACGAGTATTATGTTAAAAAAAGAGTGTAGAAGCCAACTCTAATATTTGTTACTAAAACTAGGAATCCTGATCTGGGCATCTTAACTAATTATTGGTGAGAGCAACAAGTAGAATACTGGGGTAGAGGAGAGGATTTGGATTTGCACTTTTGGGCCCATAGACTATCTAGTCATTAGCTAGTTTTAGTTATCAAGTACTTTGGTGTGTACTTTGTTGCCTTAAAAATCTCTTTCCATCTTAAAAGGGTTTATGAATTAAGCTACATTCTTTTCCTGTAGTAATTTCCCTATTATGTATAGATATATTGGATCAATTGAATGCTGAATATGAGTTATATGTTAGCTAATCCATATTGTGTTTAGATTCTTTGCCTCCTCAAATCAACTCCTATTACCTTTTAGTTACTTTTGACCTATTTAATCCTTCCCCCCTTCCCCTTTTGCAAATATAACATGTTCAGCAATAAACCATTTGTCTTTTCTTCATTATGCCTGCATTTATGATAAAGGGGAAGGTTTCTACTATATCTTTCTCTCTGGTGTATTGAAACGAACAAGCTCAAAACCATGACACGAGAAGCTCATAATATTATTTTCTCTAAAAAAATTGTATTTGCAAAGATTAATTCACCTGAAGGCTCTTATGTTATTACTTTGGCTTATTTACAATATATACATTTTTTTAAGTTTGTTTGTTGTTTGAGTTGCATTTCTGTTCTTAGGCTTTTGAACTGATTTTGGAAGAAGAGTCTCTCTTCTTTTCTAACCAAACAGGGGGTGGGGAATAGGTATTCTCTTCAATGTTTTATCTTTTTAACTGACATCTATACTAACATTGTATATGAGCATAAATGCAGTAGCTGTGAGATATCAGTAGCGGCAACAGAAAATGCCAGCCCAGAAGATTGAAACTGGTCACAATGACACAGTTCACGATGTTACTATGGACTATTATGGAAAACGTGTGGCTACAGCATCTTCTGATACCACCATAAAAATAACTGGTGTGAGCAACAATGCTGCTTCGCAACACCTTGCTACGTTGAGTGGCCATACGGGCCCTGTTTGGCAGGCTGGCTGGGCTCACCCCAAATTTGGCTCAATCCTTGCGTCCTGTTCCTATGATGGTAAGGTAATAATCTGGAAGGAAGGCAATCAGAATGAGTGGGCACAAGCTCATGTTTTTAGCGAGCACAAATCATCGGTTAATTCCATCTCCTGGGCTCCTCATGAACTTGGGCTTTGCTTGGCTTGTGGTTCTTCTGATGGTAATATTTCAGTGCACACCGCCAGGTCAGATGGTGGTTGGG</genome_strand>
        <mrna_strand>CCCCTCTCTCTCTCTCCAGCTTCGACGCGAACAAGCCATTCTCCTCTCTATCGTGTTTGCATCCAGAATTTTTCTGTTACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTGTGAGATATCAGTAGCGGCAACAGAAAATGCCAGCCCAGAAGATTGAAACTGGTCACAATGACACAGTTCACGATGTTACTATGGACTATTATGGAAAACGTGTGGCTACAGCATCTTCTGATACCACCATAAAAATAACTGGTGTGAGCAACAATGCTACTTCACAACACCTTGCTACTTTGAGTGGTCATACCGGCCCTGTTTGGCAGGCTGCCTGGGCTCACCCCAAATTTGGCTCAATCCTTGCGTCCTGTTCCTATGATGGTAAGGTAATAATCTGGAAGGAAGGCAATCATATGTAGTGGACACAAGCTCATGTTTTTAGCGAGCACAAATCATCGGTTAATTCCATCTCCTGGGCTCCTCATGAACTTGGGCTTTGCTTGGCTTGTGGTTCTTCTGATGGTAATATGTCAGTGCATACCGCCAGGTCAGATGGTGGTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E571555" ref_strand="+" ref_description="SGN-E571555 [14554]">
      <seq>ctctctctctccagcttcgacgcgaacaagccattctcctctctatcgtgtttgcatccagaatttttctgttacaggagctgtgagatatcagtagcggcaacagaaaatgccagcccagaagattgaaactggtcacaatgacacagttcacgatgttactatggactattatggaaaacgtgtggctacagcatcttctgataccaccataaaaataactggtgtgagcaacaatgctacttcacaacaccttgctactttgagtggtcataccggccctgtttggcaggctgcctgggctcaccccaaatttggctcaatccttgcgtcctgttcctatgatggtaaggtaataatctggaaggaaggcaatcagaatgagtggacacaagctcatgtttttagcgagcacaaatcatcggttaattccatctcctgggctcctcatgaacttgggctttgcttggcttgtggttcttctgatggtaatatttcagtgcataccgccaggtcagatggtggttgggacactacgagaatagaccaagctcatccagttggggtacatcagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="113279" stop="116651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113579" g_stop="113655" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113656" i_stop="115851" i_length="2196">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115852" g_stop="116351" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="576" r_length="499" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E571555" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E571555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113579" e_stop="113655"/>
          <exon e_start="115852" e_stop="116351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTCTCTCCAGCTTCGACGCGAAGAAGCCATTCTCCTCTCTATCGTGTTTGCATCCAGAATTTTTCTGTTACAGGTAAAACAATCCCTTTTTCCCCTTCATTTGCTTACAATTGAGATCTGTATTTGAGCATTATTTTTGCATTCGCTTTATTCGGTTTGGGTCTACCCGGTTTAAGATCCACGCAGAAATCCCAGATCTAGTTTGGCATGTATCTTTTTTATTTGTTTTGGTACCCTCAATGGATGTAATTTCGCCCATATGTATCGTTTTTAGCTAATACCGTTCTGTTTTATGTGTCTGATCTTCGGCGATCCGCGAATTGGTTGTTTATTATCCGGAAATCCTAATCTGAATTTTGGGGGAAAGCGGCTTAGAATCGGATCAGTTTCGATTCAATATTACATTAAGGTATGCCGGAGAAATGAATAGAAGTAGGAAATAGAAGATGAAAGATTGTTGCTTTTTATAAGACAATAGTGCAAACCATTTTTAACTGGGGTTAAACTGTCTTAGAACCTCGTGTGTTAGTAGTAAAGAATTCTGAAGTAGACACATCTTATTGAGCATGGAGAAGTATAAGGAATCCCAGTTTTGCTCTTGGGAATTGCTTGTTTCCCCTCCCCAAGTGTTTTATGGTATCTTTGTGTTAATTGATCGACTGTTTAAGTATCCTTGTCTTTATGGTATCTTTATGTTAATTGATTGACTGTTTATGTATCTTTGTCTTATGCGGTAAACTATAGAGTAGAGGTCTTGTAAGTACTGTAAGATCTTGTAGCAATTGTTTTTTGCTGAGGGCTTGAGTATTTATTAGGGAATAGATGTGGAAGCTTATAACTTGTTGGACTTTTGCATCTTCTGCAATAAGGGTTTTCTTTAAATGTTACCAATAGGATCAATTTCTCTGCCATATTATTGTCCACAAACAAGATATTCTATTTCTTCTCTTGGCTTAGTGTGGGAAGCTATTGAAACACTACCCAAAGAGATCTAGCAGAACAGATAAAAATGTGTCTATTTAGTTTTCTACAATTGATGAAAGCATAGGTAGATTTGAAGTCTAGTTATGTCCCATGAAGGAAATCTTCTATAATCTGCTATATTTATATCTATGAAAACCCTTTCTTATTTCATGACTCATGCTTATATAATAATATAAACCTTTATTGGAAGTCATCTCTAAAAAAATTTATCATTGTTATCCACTCTGCATAGTAGTCAATTTAGGAGAATCACTTATGTTGGAAAACATAGTTATATTATATTCAGGAGTATCCTAATGAATTTAGCTGATATTTCACAATAATATTATCTTTGATTGGATCGATGATCAATTTAGTATTTTCATCTCAATGGAGTACCTTTGCAGTTAATAGCAGTCTTGTCTGCAACGCAAGGACATTGGAACACTTACGAGTATTATGTTAAAAAAAGAGTGTAGAAGCCAACTCTAATATTTGTTACTAAAACTAGGAATCCTGATCTGGGCATCTTAACTAATTATTGGTGAGAGCAACAAGTAGAATACTGGGGTAGAGGAGAGGATTTGGATTTGCACTTTTGGGCCCATAGACTATCTAGTCATTAGCTAGTTTTAGTTATCAAGTACTTTGGTGTGTACTTTGTTGCCTTAAAAATCTCTTTCCATCTTAAAAGGGTTTATGAATTAAGCTACATTCTTTTCCTGTAGTAATTTCCCTATTATGTATAGATATATTGGATCAATTGAATGCTGAATATGAGTTATATGTTAGCTAATCCATATTGTGTTTAGATTCTTTGCCTCCTCAAATCAACTCCTATTACCTTTTAGTTACTTTTGACCTATTTAATCCTTCCCCCCTTCCCCTTTTGCAAATATAACATGTTCAGCAATAAACCATTTGTCTTTTCTTCATTATGCCTGCATTTATGATAAAGGGGAAGGTTTCTACTATATCTTTCTCTCTGGTGTATTGAAACGAACAAGCTCAAAACCATGACACGAGAAGCTCATAATATTATTTTCTCTAAAAAAATTGTATTTGCAAAGATTAATTCACCTGAAGGCTCTTATGTTATTACTTTGGCTTATTTACAATATATACATTTTTTTAAGTTTGTTTGTTGTTTGAGTTGCATTTCTGTTCTTAGGCTTTTGAACTGATTTTGGAAGAAGAGTCTCTCTTCTTTTCTAACCAAACAGGGGGTGGGGAATAGGTATTCTCTTCAATGTTTTATCTTTTTAACTGACATCTATACTAACATTGTATATGAGCATAAATGCAGTAGCTGTGAGATATCAGTAGCGGCAACAGAAAATGCCAGCCCAGAAGATTGAAACTGGTCACAATGACACAGTTCACGATGTTACTATGGACTATTATGGAAAACGTGTGGCTACAGCATCTTCTGATACCACCATAAAAATAACTGGTGTGAGCAACAATGCTGCTTCGCAACACCTTGCTACGTTGAGTGGCCATACGGGCCCTGTTTGGCAGGCTGGCTGGGCTCACCCCAAATTTGGCTCAATCCTTGCGTCCTGTTCCTATGATGGTAAGGTAATAATCTGGAAGGAAGGCAATCAGAATGAGTGGGCACAAGCTCATGTTTTTAGCGAGCACAAATCATCGGTTAATTCCATCTCCTGGGCTCCTCATGAACTTGGGCTTTGCTTGGCTTGTGGTTCTTCTGATGGTAATATTTCAGTGCACACCGCCAGGTCAGATGGTGGTTGGGACACTACAAGAATTGACCAAGCTCATCCAGTTGGGGTAACATCAGTT</genome_strand>
        <mrna_strand>CTCTCTCTCTCCAGCTTCGACGCGAACAAGCCATTCTCCTCTCTATCGTGTTTGCATCCAGAATTTTTCTGTTACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTGTGAGATATCAGTAGCGGCAACAGAAAATGCCAGCCCAGAAGATTGAAACTGGTCACAATGACACAGTTCACGATGTTACTATGGACTATTATGGAAAACGTGTGGCTACAGCATCTTCTGATACCACCATAAAAATAACTGGTGTGAGCAACAATGCTACTTCACAACACCTTGCTACTTTGAGTGGTCATACCGGCCCTGTTTGGCAGGCTGCCTGGGCTCACCCCAAATTTGGCTCAATCCTTGCGTCCTGTTCCTATGATGGTAAGGTAATAATCTGGAAGGAAGGCAATCAGAATGAGTGGACACAAGCTCATGTTTTTAGCGAGCACAAATCATCGGTTAATTCCATCTCCTGGGCTCCTCATGAACTTGGGCTTTGCTTGGCTTGTGGTTCTTCTGATGGTAATATTTCAGTGCATACCGCCAGGTCAGATGGTGGTTGGGACACTACGAGAATAGACCAAGCTCATCCAGTTGGGGT-ACATCAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E442887" ref_strand="+" ref_description="SGN-E442887 [cSTA-35-I14]">
      <seq>ctctctccagcttcgacgcgaacaagccattctcctctctatcgtgtttgcatccagaatttttctgttacaggagctgtgagatatcagtagcggcaacagaaaatgccagcccagaagattgaaactggtcacaatgacacagttcacgatgttactatggactattatggaaaacgtgtggctacagcatcttctgataccaccataaaaataactggtgtgagcaacaatgctacttcacaacaccttgctactttgagtggtcataccggccctgtttggcaggctgcctgggctcaccccaaatttggctcaatccttgcgtcctgttcctatgatggtaaggtaataatctggaaggaaggcaatcagaatgagtggacacaagctcatgtttttagcgagcacaaatcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="113283" stop="116497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113583" g_stop="113655" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113656" i_stop="115851" i_length="2196">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115852" g_stop="116197" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="419" r_length="346" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E442887" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E442887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113583" e_stop="113655"/>
          <exon e_start="115852" e_stop="116197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTCCAGCTTCGACGCGAAGAAGCCATTCTCCTCTCTATCGTGTTTGCATCCAGAATTTTTCTGTTACAGGTAAAACAATCCCTTTTTCCCCTTCATTTGCTTACAATTGAGATCTGTATTTGAGCATTATTTTTGCATTCGCTTTATTCGGTTTGGGTCTACCCGGTTTAAGATCCACGCAGAAATCCCAGATCTAGTTTGGCATGTATCTTTTTTATTTGTTTTGGTACCCTCAATGGATGTAATTTCGCCCATATGTATCGTTTTTAGCTAATACCGTTCTGTTTTATGTGTCTGATCTTCGGCGATCCGCGAATTGGTTGTTTATTATCCGGAAATCCTAATCTGAATTTTGGGGGAAAGCGGCTTAGAATCGGATCAGTTTCGATTCAATATTACATTAAGGTATGCCGGAGAAATGAATAGAAGTAGGAAATAGAAGATGAAAGATTGTTGCTTTTTATAAGACAATAGTGCAAACCATTTTTAACTGGGGTTAAACTGTCTTAGAACCTCGTGTGTTAGTAGTAAAGAATTCTGAAGTAGACACATCTTATTGAGCATGGAGAAGTATAAGGAATCCCAGTTTTGCTCTTGGGAATTGCTTGTTTCCCCTCCCCAAGTGTTTTATGGTATCTTTGTGTTAATTGATCGACTGTTTAAGTATCCTTGTCTTTATGGTATCTTTATGTTAATTGATTGACTGTTTATGTATCTTTGTCTTATGCGGTAAACTATAGAGTAGAGGTCTTGTAAGTACTGTAAGATCTTGTAGCAATTGTTTTTTGCTGAGGGCTTGAGTATTTATTAGGGAATAGATGTGGAAGCTTATAACTTGTTGGACTTTTGCATCTTCTGCAATAAGGGTTTTCTTTAAATGTTACCAATAGGATCAATTTCTCTGCCATATTATTGTCCACAAACAAGATATTCTATTTCTTCTCTTGGCTTAGTGTGGGAAGCTATTGAAACACTACCCAAAGAGATCTAGCAGAACAGATAAAAATGTGTCTATTTAGTTTTCTACAATTGATGAAAGCATAGGTAGATTTGAAGTCTAGTTATGTCCCATGAAGGAAATCTTCTATAATCTGCTATATTTATATCTATGAAAACCCTTTCTTATTTCATGACTCATGCTTATATAATAATATAAACCTTTATTGGAAGTCATCTCTAAAAAAATTTATCATTGTTATCCACTCTGCATAGTAGTCAATTTAGGAGAATCACTTATGTTGGAAAACATAGTTATATTATATTCAGGAGTATCCTAATGAATTTAGCTGATATTTCACAATAATATTATCTTTGATTGGATCGATGATCAATTTAGTATTTTCATCTCAATGGAGTACCTTTGCAGTTAATAGCAGTCTTGTCTGCAACGCAAGGACATTGGAACACTTACGAGTATTATGTTAAAAAAAGAGTGTAGAAGCCAACTCTAATATTTGTTACTAAAACTAGGAATCCTGATCTGGGCATCTTAACTAATTATTGGTGAGAGCAACAAGTAGAATACTGGGGTAGAGGAGAGGATTTGGATTTGCACTTTTGGGCCCATAGACTATCTAGTCATTAGCTAGTTTTAGTTATCAAGTACTTTGGTGTGTACTTTGTTGCCTTAAAAATCTCTTTCCATCTTAAAAGGGTTTATGAATTAAGCTACATTCTTTTCCTGTAGTAATTTCCCTATTATGTATAGATATATTGGATCAATTGAATGCTGAATATGAGTTATATGTTAGCTAATCCATATTGTGTTTAGATTCTTTGCCTCCTCAAATCAACTCCTATTACCTTTTAGTTACTTTTGACCTATTTAATCCTTCCCCCCTTCCCCTTTTGCAAATATAACATGTTCAGCAATAAACCATTTGTCTTTTCTTCATTATGCCTGCATTTATGATAAAGGGGAAGGTTTCTACTATATCTTTCTCTCTGGTGTATTGAAACGAACAAGCTCAAAACCATGACACGAGAAGCTCATAATATTATTTTCTCTAAAAAAATTGTATTTGCAAAGATTAATTCACCTGAAGGCTCTTATGTTATTACTTTGGCTTATTTACAATATATACATTTTTTTAAGTTTGTTTGTTGTTTGAGTTGCATTTCTGTTCTTAGGCTTTTGAACTGATTTTGGAAGAAGAGTCTCTCTTCTTTTCTAACCAAACAGGGGGTGGGGAATAGGTATTCTCTTCAATGTTTTATCTTTTTAACTGACATCTATACTAACATTGTATATGAGCATAAATGCAGTAGCTGTGAGATATCAGTAGCGGCAACAGAAAATGCCAGCCCAGAAGATTGAAACTGGTCACAATGACACAGTTCACGATGTTACTATGGACTATTATGGAAAACGTGTGGCTACAGCATCTTCTGATACCACCATAAAAATAACTGGTGTGAGCAACAATGCTGCTTCGCAACACCTTGCTACGTTGAGTGGCCATACGGGCCCTGTTTGGCAGGCTGGCTGGGCTCACCCCAAATTTGGCTCAATCCTTGCGTCCTGTTCCTATGATGGTAAGGTAATAATCTGGAAGGAAGGCAATCAGAATGAGTGGGCACAAGCTCATGTTTTTAGCGAGCACAAATCATC</genome_strand>
        <mrna_strand>CTCTCTCCAGCTTCGACGCGAACAAGCCATTCTCCTCTCTATCGTGTTTGCATCCAGAATTTTTCTGTTACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTGTGAGATATCAGTAGCGGCAACAGAAAATGCCAGCCCAGAAGATTGAAACTGGTCACAATGACACAGTTCACGATGTTACTATGGACTATTATGGAAAACGTGTGGCTACAGCATCTTCTGATACCACCATAAAAATAACTGGTGTGAGCAACAATGCTACTTCACAACACCTTGCTACTTTGAGTGGTCATACCGGCCCTGTTTGGCAGGCTGCCTGGGCTCACCCCAAATTTGGCTCAATCCTTGCGTCCTGTTCCTATGATGGTAAGGTAATAATCTGGAAGGAAGGCAATCAGAATGAGTGGACACAAGCTCATGTTTTTAGCGAGCACAAATCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E442156" ref_strand="+" ref_description="SGN-E442156 [cSTA-32-K17]">
      <seq>ctttccatcttcgacgcgaacaagccattctcggctctatcgtgtttgcatccagaattcctctgttacaggagctgtgagatatcagtagcggcaacagaaaatgccagcccagaagattgaaactggtcacaatgacacagttcacgatgttactatggactattatggaaaacgtgtggctacagcatcttctgataccaccataaaaataactggtgtgagcaacaatgctacttcacaacaccttgctactttgagtggtcataccggccctgtttggcaggctgcctgggctcaccccaaatttggctcaatccttgcgtcctgttcctatgatggtaaggtaataatctggaaggaaggcaatcagaatgagtggacacaagctcatgtttttagcgagcacaaatcatcggttaattccatctcctgggctcctcatgaacttgggctttgcttggcttgtggttcttctgatggtaatatttcagtgcataccgccaggtcagatggtggttgggacacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="113285" stop="116610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113585" g_stop="113655" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.901"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113656" i_stop="115851" i_length="2196">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.948" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115852" g_stop="116310" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="530" r_length="459" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E442156" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E442156" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113585" e_stop="113655"/>
          <exon e_start="115852" e_stop="116310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCCAGCTTCGACGCGAAGAAGCCATTCTCCTCTCTATCGTGTTTGCATCCAGAATTTTTCTGTTACAGGTAAAACAATCCCTTTTTCCCCTTCATTTGCTTACAATTGAGATCTGTATTTGAGCATTATTTTTGCATTCGCTTTATTCGGTTTGGGTCTACCCGGTTTAAGATCCACGCAGAAATCCCAGATCTAGTTTGGCATGTATCTTTTTTATTTGTTTTGGTACCCTCAATGGATGTAATTTCGCCCATATGTATCGTTTTTAGCTAATACCGTTCTGTTTTATGTGTCTGATCTTCGGCGATCCGCGAATTGGTTGTTTATTATCCGGAAATCCTAATCTGAATTTTGGGGGAAAGCGGCTTAGAATCGGATCAGTTTCGATTCAATATTACATTAAGGTATGCCGGAGAAATGAATAGAAGTAGGAAATAGAAGATGAAAGATTGTTGCTTTTTATAAGACAATAGTGCAAACCATTTTTAACTGGGGTTAAACTGTCTTAGAACCTCGTGTGTTAGTAGTAAAGAATTCTGAAGTAGACACATCTTATTGAGCATGGAGAAGTATAAGGAATCCCAGTTTTGCTCTTGGGAATTGCTTGTTTCCCCTCCCCAAGTGTTTTATGGTATCTTTGTGTTAATTGATCGACTGTTTAAGTATCCTTGTCTTTATGGTATCTTTATGTTAATTGATTGACTGTTTATGTATCTTTGTCTTATGCGGTAAACTATAGAGTAGAGGTCTTGTAAGTACTGTAAGATCTTGTAGCAATTGTTTTTTGCTGAGGGCTTGAGTATTTATTAGGGAATAGATGTGGAAGCTTATAACTTGTTGGACTTTTGCATCTTCTGCAATAAGGGTTTTCTTTAAATGTTACCAATAGGATCAATTTCTCTGCCATATTATTGTCCACAAACAAGATATTCTATTTCTTCTCTTGGCTTAGTGTGGGAAGCTATTGAAACACTACCCAAAGAGATCTAGCAGAACAGATAAAAATGTGTCTATTTAGTTTTCTACAATTGATGAAAGCATAGGTAGATTTGAAGTCTAGTTATGTCCCATGAAGGAAATCTTCTATAATCTGCTATATTTATATCTATGAAAACCCTTTCTTATTTCATGACTCATGCTTATATAATAATATAAACCTTTATTGGAAGTCATCTCTAAAAAAATTTATCATTGTTATCCACTCTGCATAGTAGTCAATTTAGGAGAATCACTTATGTTGGAAAACATAGTTATATTATATTCAGGAGTATCCTAATGAATTTAGCTGATATTTCACAATAATATTATCTTTGATTGGATCGATGATCAATTTAGTATTTTCATCTCAATGGAGTACCTTTGCAGTTAATAGCAGTCTTGTCTGCAACGCAAGGACATTGGAACACTTACGAGTATTATGTTAAAAAAAGAGTGTAGAAGCCAACTCTAATATTTGTTACTAAAACTAGGAATCCTGATCTGGGCATCTTAACTAATTATTGGTGAGAGCAACAAGTAGAATACTGGGGTAGAGGAGAGGATTTGGATTTGCACTTTTGGGCCCATAGACTATCTAGTCATTAGCTAGTTTTAGTTATCAAGTACTTTGGTGTGTACTTTGTTGCCTTAAAAATCTCTTTCCATCTTAAAAGGGTTTATGAATTAAGCTACATTCTTTTCCTGTAGTAATTTCCCTATTATGTATAGATATATTGGATCAATTGAATGCTGAATATGAGTTATATGTTAGCTAATCCATATTGTGTTTAGATTCTTTGCCTCCTCAAATCAACTCCTATTACCTTTTAGTTACTTTTGACCTATTTAATCCTTCCCCCCTTCCCCTTTTGCAAATATAACATGTTCAGCAATAAACCATTTGTCTTTTCTTCATTATGCCTGCATTTATGATAAAGGGGAAGGTTTCTACTATATCTTTCTCTCTGGTGTATTGAAACGAACAAGCTCAAAACCATGACACGAGAAGCTCATAATATTATTTTCTCTAAAAAAATTGTATTTGCAAAGATTAATTCACCTGAAGGCTCTTATGTTATTACTTTGGCTTATTTACAATATATACATTTTTTTAAGTTTGTTTGTTGTTTGAGTTGCATTTCTGTTCTTAGGCTTTTGAACTGATTTTGGAAGAAGAGTCTCTCTTCTTTTCTAACCAAACAGGGGGTGGGGAATAGGTATTCTCTTCAATGTTTTATCTTTTTAACTGACATCTATACTAACATTGTATATGAGCATAAATGCAGTAGCTGTGAGATATCAGTAGCGGCAACAGAAAATGCCAGCCCAGAAGATTGAAACTGGTCACAATGACACAGTTCACGATGTTACTATGGACTATTATGGAAAACGTGTGGCTACAGCATCTTCTGATACCACCATAAAAATAACTGGTGTGAGCAACAATGCTGCTTCGCAACACCTTGCTACGTTGAGTGGCCATACGGGCCCTGTTTGGCAGGCTGGCTGGGCTCACCCCAAATTTGGCTCAATCCTTGCGTCCTGTTCCTATGATGGTAAGGTAATAATCTGGAAGGAAGGCAATCAGAATGAGTGGGCACAAGCTCATGTTTTTAGCGAGCACAAATCATCGGTTAATTCCATCTCCTGGGCTCCTCATGAACTTGGGCTTTGCTTGGCTTGTGGTTCTTCTGATGGTAATATTTCAGTGCACACCGCCAGGTCAGATGGTGGTTGGGACACTA</genome_strand>
        <mrna_strand>CTTTCCATCTTCGACGCGAACAAGCCATTCTCGGCTCTATCGTGTTTGCATCCAGAATTCCTCTGTTACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTGTGAGATATCAGTAGCGGCAACAGAAAATGCCAGCCCAGAAGATTGAAACTGGTCACAATGACACAGTTCACGATGTTACTATGGACTATTATGGAAAACGTGTGGCTACAGCATCTTCTGATACCACCATAAAAATAACTGGTGTGAGCAACAATGCTACTTCACAACACCTTGCTACTTTGAGTGGTCATACCGGCCCTGTTTGGCAGGCTGCCTGGGCTCACCCCAAATTTGGCTCAATCCTTGCGTCCTGTTCCTATGATGGTAAGGTAATAATCTGGAAGGAAGGCAATCAGAATGAGTGGACACAAGCTCATGTTTTTAGCGAGCACAAATCATCGGTTAATTCCATCTCCTGGGCTCCTCATGAACTTGGGCTTTGCTTGGCTTGTGGTTCTTCTGATGGTAATATTTCAGTGCATACCGCCAGGTCAGATGGTGGTTGGGACACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E453845" ref_strand="+" ref_description="SGN-E453845 [cSTS-21-G18]">
      <seq>ttcgacgcgaaaagccattctcctctctatcgtgtttgcatccagattttttctgttacaggagctgtgagtatcagtagcggcaacagaaaatgccagcccagaagcttgaaactggtcacaatgacacagttcatgatgttactatggactattatggaaaacgtgtggctacagcatcttctgataccaccataaaaataactggtgtgagcaacaatgctgcttcacaacaccttgctactttgagtggtcataccggccctgtttggcaggctgcctgggctcaccccaaatttggctcaatccttgcgtcctgttcctatgatggtaaggtaataatctggaaggaaggcaatcagaatgagtggacacaagctcatgtttttagcgagcacaaatcatcggttaattccatctcctgggctcctcatgaacttgggctttgcttggcttgtggttcttctgatggtaatatttcagtgcataccgccaggtcagatggtggttgggacactacgagaatagaccaagctcatccagttggggtaacatcagtttcatgggcgccatcaatggctcctggtcctttagttggtgccaggtgtgcttgaacctgttcaaaagctggcatctnggtggatgtgataacactgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="113294" stop="116746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113594" g_stop="113655" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113656" i_stop="115851" i_length="2196">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.948" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115852" g_stop="116446" g_length="595"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="657" r_length="596" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E453845" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E453845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113594" e_stop="113655"/>
          <exon e_start="115852" e_stop="116446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGACGCGAAGAAGCCATTCTCCTCTCTATCGTGTTTGCATCCAGAATTTTTCTGTTACAGGTAAAACAATCCCTTTTTCCCCTTCATTTGCTTACAATTGAGATCTGTATTTGAGCATTATTTTTGCATTCGCTTTATTCGGTTTGGGTCTACCCGGTTTAAGATCCACGCAGAAATCCCAGATCTAGTTTGGCATGTATCTTTTTTATTTGTTTTGGTACCCTCAATGGATGTAATTTCGCCCATATGTATCGTTTTTAGCTAATACCGTTCTGTTTTATGTGTCTGATCTTCGGCGATCCGCGAATTGGTTGTTTATTATCCGGAAATCCTAATCTGAATTTTGGGGGAAAGCGGCTTAGAATCGGATCAGTTTCGATTCAATATTACATTAAGGTATGCCGGAGAAATGAATAGAAGTAGGAAATAGAAGATGAAAGATTGTTGCTTTTTATAAGACAATAGTGCAAACCATTTTTAACTGGGGTTAAACTGTCTTAGAACCTCGTGTGTTAGTAGTAAAGAATTCTGAAGTAGACACATCTTATTGAGCATGGAGAAGTATAAGGAATCCCAGTTTTGCTCTTGGGAATTGCTTGTTTCCCCTCCCCAAGTGTTTTATGGTATCTTTGTGTTAATTGATCGACTGTTTAAGTATCCTTGTCTTTATGGTATCTTTATGTTAATTGATTGACTGTTTATGTATCTTTGTCTTATGCGGTAAACTATAGAGTAGAGGTCTTGTAAGTACTGTAAGATCTTGTAGCAATTGTTTTTTGCTGAGGGCTTGAGTATTTATTAGGGAATAGATGTGGAAGCTTATAACTTGTTGGACTTTTGCATCTTCTGCAATAAGGGTTTTCTTTAAATGTTACCAATAGGATCAATTTCTCTGCCATATTATTGTCCACAAACAAGATATTCTATTTCTTCTCTTGGCTTAGTGTGGGAAGCTATTGAAACACTACCCAAAGAGATCTAGCAGAACAGATAAAAATGTGTCTATTTAGTTTTCTACAATTGATGAAAGCATAGGTAGATTTGAAGTCTAGTTATGTCCCATGAAGGAAATCTTCTATAATCTGCTATATTTATATCTATGAAAACCCTTTCTTATTTCATGACTCATGCTTATATAATAATATAAACCTTTATTGGAAGTCATCTCTAAAAAAATTTATCATTGTTATCCACTCTGCATAGTAGTCAATTTAGGAGAATCACTTATGTTGGAAAACATAGTTATATTATATTCAGGAGTATCCTAATGAATTTAGCTGATATTTCACAATAATATTATCTTTGATTGGATCGATGATCAATTTAGTATTTTCATCTCAATGGAGTACCTTTGCAGTTAATAGCAGTCTTGTCTGCAACGCAAGGACATTGGAACACTTACGAGTATTATGTTAAAAAAAGAGTGTAGAAGCCAACTCTAATATTTGTTACTAAAACTAGGAATCCTGATCTGGGCATCTTAACTAATTATTGGTGAGAGCAACAAGTAGAATACTGGGGTAGAGGAGAGGATTTGGATTTGCACTTTTGGGCCCATAGACTATCTAGTCATTAGCTAGTTTTAGTTATCAAGTACTTTGGTGTGTACTTTGTTGCCTTAAAAATCTCTTTCCATCTTAAAAGGGTTTATGAATTAAGCTACATTCTTTTCCTGTAGTAATTTCCCTATTATGTATAGATATATTGGATCAATTGAATGCTGAATATGAGTTATATGTTAGCTAATCCATATTGTGTTTAGATTCTTTGCCTCCTCAAATCAACTCCTATTACCTTTTAGTTACTTTTGACCTATTTAATCCTTCCCCCCTTCCCCTTTTGCAAATATAACATGTTCAGCAATAAACCATTTGTCTTTTCTTCATTATGCCTGCATTTATGATAAAGGGGAAGGTTTCTACTATATCTTTCTCTCTGGTGTATTGAAACGAACAAGCTCAAAACCATGACACGAGAAGCTCATAATATTATTTTCTCTAAAAAAATTGTATTTGCAAAGATTAATTCACCTGAAGGCTCTTATGTTATTACTTTGGCTTATTTACAATATATACATTTTTTTAAGTTTGTTTGTTGTTTGAGTTGCATTTCTGTTCTTAGGCTTTTGAACTGATTTTGGAAGAAGAGTCTCTCTTCTTTTCTAACCAAACAGGGGGTGGGGAATAGGTATTCTCTTCAATGTTTTATCTTTTTAACTGACATCTATACTAACATTGTATATGAGCATAAATGCAGTAGCTGTGAGATATCAGTAGCGGCAACAGAAAATGCCAGCCCAGAAGATTGAAACTGGTCACAATGACACAGTTCACGATGTTACTATGGACTATTATGGAAAACGTGTGGCTACAGCATCTTCTGATACCACCATAAAAATAACTGGTGTGAGCAACAATGCTGCTTCGCAACACCTTGCTACGTTGAGTGGCCATACGGGCCCTGTTTGGCAGGCTGGCTGGGCTCACCCCAAATTTGGCTCAATCCTTGCGTCCTGTTCCTATGATGGTAAGGTAATAATCTGGAAGGAAGGCAATCAGAATGAGTGGGCACAAGCTCATGTTTTTAGCGAGCACAAATCATCGGTTAATTCCATCTCCTGGGCTCCTCATGAACTTGGGCTTTGCTTGGCTTGTGGTTCTTCTGATGGTAATATTTCAGTGCACACCGCCAGGTCAGATGGTGGTTGGGACACTACAAGAATTGACCAAGCTCATCCAGTTGGGGTAACATCAGTTTCATGGGCGCCTTCAATGGCTCCTGGTGCTTTAGTTGGTG-CAGGTGTGCTTGAACCTGTTCAAAAGCTGGCATCT-GGTGGATGTGATAACACTGT</genome_strand>
        <mrna_strand>TTCGACGCGAA-AAGCCATTCTCCTCTCTATCGTGTTTGCATCCAGATTTTTTCTGTTACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTGTGAG-TATCAGTAGCGGCAACAGAAAATGCCAGCCCAGAAGCTTGAAACTGGTCACAATGACACAGTTCATGATGTTACTATGGACTATTATGGAAAACGTGTGGCTACAGCATCTTCTGATACCACCATAAAAATAACTGGTGTGAGCAACAATGCTGCTTCACAACACCTTGCTACTTTGAGTGGTCATACCGGCCCTGTTTGGCAGGCTGCCTGGGCTCACCCCAAATTTGGCTCAATCCTTGCGTCCTGTTCCTATGATGGTAAGGTAATAATCTGGAAGGAAGGCAATCAGAATGAGTGGACACAAGCTCATGTTTTTAGCGAGCACAAATCATCGGTTAATTCCATCTCCTGGGCTCCTCATGAACTTGGGCTTTGCTTGGCTTGTGGTTCTTCTGATGGTAATATTTCAGTGCATACCGCCAGGTCAGATGGTGGTTGGGACACTACGAGAATAGACCAAGCTCATCCAGTTGGGGTAACATCAGTTTCATGGGCGCCATCAATGGCTCCTGGTCCTTTAGTTGGTGCCAGGTGTGCTTGAACCTGTTCAAAAGCTGGCATCTNGGTGGATGTGATAACACTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E486709" ref_strand="+" ref_description="SGN-E486709 [cSTE-23-C9]">
      <seq>tgcgaacaagccattctcctctccatcgtgtttgcatccagaatttttctgtgacaggagctgtgagatatcagtagaggcaacagaaaatgccagcccagaagattgaaactggtcacaatgacacagttcacgatgttactatggactattatggaaaacgtgtggctacagcatcttctgataccaccataaaaataactggtgtgagcaacaatgctgcttcacaacaccttgctactttgagtggtcataccggccctgtttggcaggctgcctgggctcaccccaaatttggctcaatccttgcgtcctgttcctatgatggtaaggtaataatctggaaggaaggcaatcagaatgagtggacacaagctcatgtttttagcgagcacaaatcatcggttaattccatctcctgggctcctcatgaacttgggctttgcttggcttgtggttcttctgatggtaatatttcagtgcacaccgccaggtcagatggtggttgggacactacaagaatagaccaagctcatccagttggggtaacatcagtttcatgggcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="113300" stop="116661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113599" g_stop="113655" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113656" i_stop="115851" i_length="2196">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.948" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115852" g_stop="116361" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="567" r_length="510" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E486709" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E486709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113599" e_stop="113655"/>
          <exon e_start="115852" e_stop="116361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCGAAGAAGCCATTCTCCTCTCTATCGTGTTTGCATCCAGAATTTTTCTGTTACAGGTAAAACAATCCCTTTTTCCCCTTCATTTGCTTACAATTGAGATCTGTATTTGAGCATTATTTTTGCATTCGCTTTATTCGGTTTGGGTCTACCCGGTTTAAGATCCACGCAGAAATCCCAGATCTAGTTTGGCATGTATCTTTTTTATTTGTTTTGGTACCCTCAATGGATGTAATTTCGCCCATATGTATCGTTTTTAGCTAATACCGTTCTGTTTTATGTGTCTGATCTTCGGCGATCCGCGAATTGGTTGTTTATTATCCGGAAATCCTAATCTGAATTTTGGGGGAAAGCGGCTTAGAATCGGATCAGTTTCGATTCAATATTACATTAAGGTATGCCGGAGAAATGAATAGAAGTAGGAAATAGAAGATGAAAGATTGTTGCTTTTTATAAGACAATAGTGCAAACCATTTTTAACTGGGGTTAAACTGTCTTAGAACCTCGTGTGTTAGTAGTAAAGAATTCTGAAGTAGACACATCTTATTGAGCATGGAGAAGTATAAGGAATCCCAGTTTTGCTCTTGGGAATTGCTTGTTTCCCCTCCCCAAGTGTTTTATGGTATCTTTGTGTTAATTGATCGACTGTTTAAGTATCCTTGTCTTTATGGTATCTTTATGTTAATTGATTGACTGTTTATGTATCTTTGTCTTATGCGGTAAACTATAGAGTAGAGGTCTTGTAAGTACTGTAAGATCTTGTAGCAATTGTTTTTTGCTGAGGGCTTGAGTATTTATTAGGGAATAGATGTGGAAGCTTATAACTTGTTGGACTTTTGCATCTTCTGCAATAAGGGTTTTCTTTAAATGTTACCAATAGGATCAATTTCTCTGCCATATTATTGTCCACAAACAAGATATTCTATTTCTTCTCTTGGCTTAGTGTGGGAAGCTATTGAAACACTACCCAAAGAGATCTAGCAGAACAGATAAAAATGTGTCTATTTAGTTTTCTACAATTGATGAAAGCATAGGTAGATTTGAAGTCTAGTTATGTCCCATGAAGGAAATCTTCTATAATCTGCTATATTTATATCTATGAAAACCCTTTCTTATTTCATGACTCATGCTTATATAATAATATAAACCTTTATTGGAAGTCATCTCTAAAAAAATTTATCATTGTTATCCACTCTGCATAGTAGTCAATTTAGGAGAATCACTTATGTTGGAAAACATAGTTATATTATATTCAGGAGTATCCTAATGAATTTAGCTGATATTTCACAATAATATTATCTTTGATTGGATCGATGATCAATTTAGTATTTTCATCTCAATGGAGTACCTTTGCAGTTAATAGCAGTCTTGTCTGCAACGCAAGGACATTGGAACACTTACGAGTATTATGTTAAAAAAAGAGTGTAGAAGCCAACTCTAATATTTGTTACTAAAACTAGGAATCCTGATCTGGGCATCTTAACTAATTATTGGTGAGAGCAACAAGTAGAATACTGGGGTAGAGGAGAGGATTTGGATTTGCACTTTTGGGCCCATAGACTATCTAGTCATTAGCTAGTTTTAGTTATCAAGTACTTTGGTGTGTACTTTGTTGCCTTAAAAATCTCTTTCCATCTTAAAAGGGTTTATGAATTAAGCTACATTCTTTTCCTGTAGTAATTTCCCTATTATGTATAGATATATTGGATCAATTGAATGCTGAATATGAGTTATATGTTAGCTAATCCATATTGTGTTTAGATTCTTTGCCTCCTCAAATCAACTCCTATTACCTTTTAGTTACTTTTGACCTATTTAATCCTTCCCCCCTTCCCCTTTTGCAAATATAACATGTTCAGCAATAAACCATTTGTCTTTTCTTCATTATGCCTGCATTTATGATAAAGGGGAAGGTTTCTACTATATCTTTCTCTCTGGTGTATTGAAACGAACAAGCTCAAAACCATGACACGAGAAGCTCATAATATTATTTTCTCTAAAAAAATTGTATTTGCAAAGATTAATTCACCTGAAGGCTCTTATGTTATTACTTTGGCTTATTTACAATATATACATTTTTTTAAGTTTGTTTGTTGTTTGAGTTGCATTTCTGTTCTTAGGCTTTTGAACTGATTTTGGAAGAAGAGTCTCTCTTCTTTTCTAACCAAACAGGGGGTGGGGAATAGGTATTCTCTTCAATGTTTTATCTTTTTAACTGACATCTATACTAACATTGTATATGAGCATAAATGCAGTAGCTGTGAGATATCAGTAGCGGCAACAGAAAATGCCAGCCCAGAAGATTGAAACTGGTCACAATGACACAGTTCACGATGTTACTATGGACTATTATGGAAAACGTGTGGCTACAGCATCTTCTGATACCACCATAAAAATAACTGGTGTGAGCAACAATGCTGCTTCGCAACACCTTGCTACGTTGAGTGGCCATACGGGCCCTGTTTGGCAGGCTGGCTGGGCTCACCCCAAATTTGGCTCAATCCTTGCGTCCTGTTCCTATGATGGTAAGGTAATAATCTGGAAGGAAGGCAATCAGAATGAGTGGGCACAAGCTCATGTTTTTAGCGAGCACAAATCATCGGTTAATTCCATCTCCTGGGCTCCTCATGAACTTGGGCTTTGCTTGGCTTGTGGTTCTTCTGATGGTAATATTTCAGTGCACACCGCCAGGTCAGATGGTGGTTGGGACACTACAAGAATTGACCAAGCTCATCCAGTTGGGGTAACATCAGTTTCATGGGCGC</genome_strand>
        <mrna_strand>TGCGAACAAGCCATTCTCCTCTCCATCGTGTTTGCATCCAGAATTTTTCTGTGACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTGTGAGATATCAGTAGAGGCAACAGAAAATGCCAGCCCAGAAGATTGAAACTGGTCACAATGACACAGTTCACGATGTTACTATGGACTATTATGGAAAACGTGTGGCTACAGCATCTTCTGATACCACCATAAAAATAACTGGTGTGAGCAACAATGCTGCTTCACAACACCTTGCTACTTTGAGTGGTCATACCGGCCCTGTTTGGCAGGCTGCCTGGGCTCACCCCAAATTTGGCTCAATCCTTGCGTCCTGTTCCTATGATGGTAAGGTAATAATCTGGAAGGAAGGCAATCAGAATGAGTGGACACAAGCTCATGTTTTTAGCGAGCACAAATCATCGGTTAATTCCATCTCCTGGGCTCCTCATGAACTTGGGCTTTGCTTGGCTTGTGGTTCTTCTGATGGTAATATTTCAGTGCACACCGCCAGGTCAGATGGTGGTTGGGACACTACAAGAATAGACCAAGCTCATCCAGTTGGGGTAACATCAGTTTCATGGGCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E710087" ref_strand="+" ref_description="SGN-E710087 [FA54AF11]">
      <seq>gaggagccattctcctctctatcgtgtttgcatccagaatttttctgttacagtagctgtgagatatcagtagcggcaacagaaaatgccagcccagaagattgaaactggttacaatgacacagttcacgatgttactatggactattatggaaaacgtgtggctacagcatcttctgataccaccataaaaataactggtgtgagcaacaatgctgcttcgcaacaccttgctacgttgagtggccatacgggccctgtttggcaggctggctgggctcaccccaaatttggctcaatccttgcgtcctgttcctatgatggtaaggtaataatctggaaggaaggcaatcagaatgagtgggcacaagctcatgtttttagcgagcacaaatcatcggttaattccatctcctgggctcctcatgaacttgggctttgcttggcttgtggttcttctgatggtaatatttcagtgcacaccgccaggtcagatggtggttgggacactacaagaattgaccaagctcatccagttggggtaacatcagtttcatgggcgccttcaatggctcctggtgctttagttggtgcaggtgtgcttgaacctgttcaaaagctggcatctggtggatgtgataacactgttaaagtttggaagttgtataatggtgtctggaagatggattgcttccctgcacttcaaatgcacactaactgggtgaaagatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="113304" stop="116830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113603" g_stop="113655" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113656" i_stop="115851" i_length="2196">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115852" g_stop="116530" g_length="679"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="732" r_length="679" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E710087" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113603" e_stop="113655"/>
          <exon e_start="115852" e_stop="116530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGCCATTCTCCTCTCTATCGTGTTTGCATCCAGAATTTTTCTGTTACAGGTAAAACAATCCCTTTTTCCCCTTCATTTGCTTACAATTGAGATCTGTATTTGAGCATTATTTTTGCATTCGCTTTATTCGGTTTGGGTCTACCCGGTTTAAGATCCACGCAGAAATCCCAGATCTAGTTTGGCATGTATCTTTTTTATTTGTTTTGGTACCCTCAATGGATGTAATTTCGCCCATATGTATCGTTTTTAGCTAATACCGTTCTGTTTTATGTGTCTGATCTTCGGCGATCCGCGAATTGGTTGTTTATTATCCGGAAATCCTAATCTGAATTTTGGGGGAAAGCGGCTTAGAATCGGATCAGTTTCGATTCAATATTACATTAAGGTATGCCGGAGAAATGAATAGAAGTAGGAAATAGAAGATGAAAGATTGTTGCTTTTTATAAGACAATAGTGCAAACCATTTTTAACTGGGGTTAAACTGTCTTAGAACCTCGTGTGTTAGTAGTAAAGAATTCTGAAGTAGACACATCTTATTGAGCATGGAGAAGTATAAGGAATCCCAGTTTTGCTCTTGGGAATTGCTTGTTTCCCCTCCCCAAGTGTTTTATGGTATCTTTGTGTTAATTGATCGACTGTTTAAGTATCCTTGTCTTTATGGTATCTTTATGTTAATTGATTGACTGTTTATGTATCTTTGTCTTATGCGGTAAACTATAGAGTAGAGGTCTTGTAAGTACTGTAAGATCTTGTAGCAATTGTTTTTTGCTGAGGGCTTGAGTATTTATTAGGGAATAGATGTGGAAGCTTATAACTTGTTGGACTTTTGCATCTTCTGCAATAAGGGTTTTCTTTAAATGTTACCAATAGGATCAATTTCTCTGCCATATTATTGTCCACAAACAAGATATTCTATTTCTTCTCTTGGCTTAGTGTGGGAAGCTATTGAAACACTACCCAAAGAGATCTAGCAGAACAGATAAAAATGTGTCTATTTAGTTTTCTACAATTGATGAAAGCATAGGTAGATTTGAAGTCTAGTTATGTCCCATGAAGGAAATCTTCTATAATCTGCTATATTTATATCTATGAAAACCCTTTCTTATTTCATGACTCATGCTTATATAATAATATAAACCTTTATTGGAAGTCATCTCTAAAAAAATTTATCATTGTTATCCACTCTGCATAGTAGTCAATTTAGGAGAATCACTTATGTTGGAAAACATAGTTATATTATATTCAGGAGTATCCTAATGAATTTAGCTGATATTTCACAATAATATTATCTTTGATTGGATCGATGATCAATTTAGTATTTTCATCTCAATGGAGTACCTTTGCAGTTAATAGCAGTCTTGTCTGCAACGCAAGGACATTGGAACACTTACGAGTATTATGTTAAAAAAAGAGTGTAGAAGCCAACTCTAATATTTGTTACTAAAACTAGGAATCCTGATCTGGGCATCTTAACTAATTATTGGTGAGAGCAACAAGTAGAATACTGGGGTAGAGGAGAGGATTTGGATTTGCACTTTTGGGCCCATAGACTATCTAGTCATTAGCTAGTTTTAGTTATCAAGTACTTTGGTGTGTACTTTGTTGCCTTAAAAATCTCTTTCCATCTTAAAAGGGTTTATGAATTAAGCTACATTCTTTTCCTGTAGTAATTTCCCTATTATGTATAGATATATTGGATCAATTGAATGCTGAATATGAGTTATATGTTAGCTAATCCATATTGTGTTTAGATTCTTTGCCTCCTCAAATCAACTCCTATTACCTTTTAGTTACTTTTGACCTATTTAATCCTTCCCCCCTTCCCCTTTTGCAAATATAACATGTTCAGCAATAAACCATTTGTCTTTTCTTCATTATGCCTGCATTTATGATAAAGGGGAAGGTTTCTACTATATCTTTCTCTCTGGTGTATTGAAACGAACAAGCTCAAAACCATGACACGAGAAGCTCATAATATTATTTTCTCTAAAAAAATTGTATTTGCAAAGATTAATTCACCTGAAGGCTCTTATGTTATTACTTTGGCTTATTTACAATATATACATTTTTTTAAGTTTGTTTGTTGTTTGAGTTGCATTTCTGTTCTTAGGCTTTTGAACTGATTTTGGAAGAAGAGTCTCTCTTCTTTTCTAACCAAACAGGGGGTGGGGAATAGGTATTCTCTTCAATGTTTTATCTTTTTAACTGACATCTATACTAACATTGTATATGAGCATAAATGCAGTAGCTGTGAGATATCAGTAGCGGCAACAGAAAATGCCAGCCCAGAAGATTGAAACTGGTCACAATGACACAGTTCACGATGTTACTATGGACTATTATGGAAAACGTGTGGCTACAGCATCTTCTGATACCACCATAAAAATAACTGGTGTGAGCAACAATGCTGCTTCGCAACACCTTGCTACGTTGAGTGGCCATACGGGCCCTGTTTGGCAGGCTGGCTGGGCTCACCCCAAATTTGGCTCAATCCTTGCGTCCTGTTCCTATGATGGTAAGGTAATAATCTGGAAGGAAGGCAATCAGAATGAGTGGGCACAAGCTCATGTTTTTAGCGAGCACAAATCATCGGTTAATTCCATCTCCTGGGCTCCTCATGAACTTGGGCTTTGCTTGGCTTGTGGTTCTTCTGATGGTAATATTTCAGTGCACACCGCCAGGTCAGATGGTGGTTGGGACACTACAAGAATTGACCAAGCTCATCCAGTTGGGGTAACATCAGTTTCATGGGCGCCTTCAATGGCTCCTGGTGCTTTAGTTGGTGCAGGTGTGCTTGAACCTGTTCAAAAGCTGGCATCTGGTGGATGTGATAACACTGTTAAAGTTTGGAAGTTGTATAATGGTGTTTGGAAGATGGATTGCTTCCCTGCACTTCAGATGCACACTAACTGGGTGAGAGATGT</genome_strand>
        <mrna_strand>GAGGAGCCATTCTCCTCTCTATCGTGTTTGCATCCAGAATTTTTCTGTTACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCTGTGAGATATCAGTAGCGGCAACAGAAAATGCCAGCCCAGAAGATTGAAACTGGTTACAATGACACAGTTCACGATGTTACTATGGACTATTATGGAAAACGTGTGGCTACAGCATCTTCTGATACCACCATAAAAATAACTGGTGTGAGCAACAATGCTGCTTCGCAACACCTTGCTACGTTGAGTGGCCATACGGGCCCTGTTTGGCAGGCTGGCTGGGCTCACCCCAAATTTGGCTCAATCCTTGCGTCCTGTTCCTATGATGGTAAGGTAATAATCTGGAAGGAAGGCAATCAGAATGAGTGGGCACAAGCTCATGTTTTTAGCGAGCACAAATCATCGGTTAATTCCATCTCCTGGGCTCCTCATGAACTTGGGCTTTGCTTGGCTTGTGGTTCTTCTGATGGTAATATTTCAGTGCACACCGCCAGGTCAGATGGTGGTTGGGACACTACAAGAATTGACCAAGCTCATCCAGTTGGGGTAACATCAGTTTCATGGGCGCCTTCAATGGCTCCTGGTGCTTTAGTTGGTGCAGGTGTGCTTGAACCTGTTCAAAAGCTGGCATCTGGTGGATGTGATAACACTGTTAAAGTTTGGAAGTTGTATAATGGTGTCTGGAAGATGGATTGCTTCCCTGCACTTCAAATGCACACTAACTGGGTGAAAGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341578" ref_strand="+" ref_description="SGN-E341578 [cTOE-23-B18]">
      <seq>gccattctcctctctatcgtgtttgcatccagaatttttctgttgcagtagctgtgagatatcagtagcggcaacagaaaatgccagcccagaagattgaaactggtcacaatgacacagttcacgatgttactatggactattatggaaaacgtgtggctacagcatcttctgataccaccataaaaataactggtgtgagcaacaatgctgcttcgcaacaccttgctacgttgagtggccatacgggccctgtttggcaggctggctgggctcaccccaaatttggctcaatccttgcgtcctgttcctatgatggtaaggtaataatctggaaggaaggcaatcagaatgagtgggcacaagctcatgtttttagcgagcacaaatcatcggttaattccatctcctgggctcctcatgaacttgggctttgcttggcttggggttcttctgatggtaatatttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="113308" stop="116573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113608" g_stop="113655" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113656" i_stop="115851" i_length="2196">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115852" g_stop="116273" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="470" r_length="422" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E341578" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113608" e_stop="113655"/>
          <exon e_start="115852" e_stop="116273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCATTCTCCTCTCTATCGTGTTTGCATCCAGAATTTTTCTGTTACAGGTAAAACAATCCCTTTTTCCCCTTCATTTGCTTACAATTGAGATCTGTATTTGAGCATTATTTTTGCATTCGCTTTATTCGGTTTGGGTCTACCCGGTTTAAGATCCACGCAGAAATCCCAGATCTAGTTTGGCATGTATCTTTTTTATTTGTTTTGGTACCCTCAATGGATGTAATTTCGCCCATATGTATCGTTTTTAGCTAATACCGTTCTGTTTTATGTGTCTGATCTTCGGCGATCCGCGAATTGGTTGTTTATTATCCGGAAATCCTAATCTGAATTTTGGGGGAAAGCGGCTTAGAATCGGATCAGTTTCGATTCAATATTACATTAAGGTATGCCGGAGAAATGAATAGAAGTAGGAAATAGAAGATGAAAGATTGTTGCTTTTTATAAGACAATAGTGCAAACCATTTTTAACTGGGGTTAAACTGTCTTAGAACCTCGTGTGTTAGTAGTAAAGAATTCTGAAGTAGACACATCTTATTGAGCATGGAGAAGTATAAGGAATCCCAGTTTTGCTCTTGGGAATTGCTTGTTTCCCCTCCCCAAGTGTTTTATGGTATCTTTGTGTTAATTGATCGACTGTTTAAGTATCCTTGTCTTTATGGTATCTTTATGTTAATTGATTGACTGTTTATGTATCTTTGTCTTATGCGGTAAACTATAGAGTAGAGGTCTTGTAAGTACTGTAAGATCTTGTAGCAATTGTTTTTTGCTGAGGGCTTGAGTATTTATTAGGGAATAGATGTGGAAGCTTATAACTTGTTGGACTTTTGCATCTTCTGCAATAAGGGTTTTCTTTAAATGTTACCAATAGGATCAATTTCTCTGCCATATTATTGTCCACAAACAAGATATTCTATTTCTTCTCTTGGCTTAGTGTGGGAAGCTATTGAAACACTACCCAAAGAGATCTAGCAGAACAGATAAAAATGTGTCTATTTAGTTTTCTACAATTGATGAAAGCATAGGTAGATTTGAAGTCTAGTTATGTCCCATGAAGGAAATCTTCTATAATCTGCTATATTTATATCTATGAAAACCCTTTCTTATTTCATGACTCATGCTTATATAATAATATAAACCTTTATTGGAAGTCATCTCTAAAAAAATTTATCATTGTTATCCACTCTGCATAGTAGTCAATTTAGGAGAATCACTTATGTTGGAAAACATAGTTATATTATATTCAGGAGTATCCTAATGAATTTAGCTGATATTTCACAATAATATTATCTTTGATTGGATCGATGATCAATTTAGTATTTTCATCTCAATGGAGTACCTTTGCAGTTAATAGCAGTCTTGTCTGCAACGCAAGGACATTGGAACACTTACGAGTATTATGTTAAAAAAAGAGTGTAGAAGCCAACTCTAATATTTGTTACTAAAACTAGGAATCCTGATCTGGGCATCTTAACTAATTATTGGTGAGAGCAACAAGTAGAATACTGGGGTAGAGGAGAGGATTTGGATTTGCACTTTTGGGCCCATAGACTATCTAGTCATTAGCTAGTTTTAGTTATCAAGTACTTTGGTGTGTACTTTGTTGCCTTAAAAATCTCTTTCCATCTTAAAAGGGTTTATGAATTAAGCTACATTCTTTTCCTGTAGTAATTTCCCTATTATGTATAGATATATTGGATCAATTGAATGCTGAATATGAGTTATATGTTAGCTAATCCATATTGTGTTTAGATTCTTTGCCTCCTCAAATCAACTCCTATTACCTTTTAGTTACTTTTGACCTATTTAATCCTTCCCCCCTTCCCCTTTTGCAAATATAACATGTTCAGCAATAAACCATTTGTCTTTTCTTCATTATGCCTGCATTTATGATAAAGGGGAAGGTTTCTACTATATCTTTCTCTCTGGTGTATTGAAACGAACAAGCTCAAAACCATGACACGAGAAGCTCATAATATTATTTTCTCTAAAAAAATTGTATTTGCAAAGATTAATTCACCTGAAGGCTCTTATGTTATTACTTTGGCTTATTTACAATATATACATTTTTTTAAGTTTGTTTGTTGTTTGAGTTGCATTTCTGTTCTTAGGCTTTTGAACTGATTTTGGAAGAAGAGTCTCTCTTCTTTTCTAACCAAACAGGGGGTGGGGAATAGGTATTCTCTTCAATGTTTTATCTTTTTAACTGACATCTATACTAACATTGTATATGAGCATAAATGCAGTAGCTGTGAGATATCAGTAGCGGCAACAGAAAATGCCAGCCCAGAAGATTGAAACTGGTCACAATGACACAGTTCACGATGTTACTATGGACTATTATGGAAAACGTGTGGCTACAGCATCTTCTGATACCACCATAAAAATAACTGGTGTGAGCAACAATGCTGCTTCGCAACACCTTGCTACGTTGAGTGGCCATACGGGCCCTGTTTGGCAGGCTGGCTGGGCTCACCCCAAATTTGGCTCAATCCTTGCGTCCTGTTCCTATGATGGTAAGGTAATAATCTGGAAGGAAGGCAATCAGAATGAGTGGGCACAAGCTCATGTTTTTAGCGAGCACAAATCATCGGTTAATTCCATCTCCTGGGCTCCTCATGAACTTGGGCTTTGCTTGGCTTGTGGTTCTTCTGATGGTAATATTTCA</genome_strand>
        <mrna_strand>GCCATTCTCCTCTCTATCGTGTTTGCATCCAGAATTTTTCTGTTGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCTGTGAGATATCAGTAGCGGCAACAGAAAATGCCAGCCCAGAAGATTGAAACTGGTCACAATGACACAGTTCACGATGTTACTATGGACTATTATGGAAAACGTGTGGCTACAGCATCTTCTGATACCACCATAAAAATAACTGGTGTGAGCAACAATGCTGCTTCGCAACACCTTGCTACGTTGAGTGGCCATACGGGCCCTGTTTGGCAGGCTGGCTGGGCTCACCCCAAATTTGGCTCAATCCTTGCGTCCTGTTCCTATGATGGTAAGGTAATAATCTGGAAGGAAGGCAATCAGAATGAGTGGGCACAAGCTCATGTTTTTAGCGAGCACAAATCATCGGTTAATTCCATCTCCTGGGCTCCTCATGAACTTGGGCTTTGCTTGGCTTGGGGTTCTTCTGATGGTAATATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E440659" ref_strand="+" ref_description="SGN-E440659 [cSTA-18-A23]">
      <seq>attctcctctctatcgggtttgcatccagaatttttctgttacaggagctgtgagatatcagtagcggcaacagaaaatgccagcccagaagattgaaactggtcacaatgacacagttcacgatgttactatggactattatggaaaacgtgtggctacagcatcttctgataccaccataaaaataactggtgtgagcaacaatgctacttcacaacaccttgctactttgagtggtcataccggccctgtttggcaggctgcctgggctcaccccaaatttggctcaatccttgcgtcctgttcctatgatggtaaggtaataatctggaaggaaggcaatcagaatgagtggacacaagctcatgtttttagcgagcacaaatcatcggttaattccatctcctgggctcctcatgaacttgggctttgcttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="113311" stop="116545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113611" g_stop="113655" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113656" i_stop="115851" i_length="2196">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.948" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115852" g_stop="116245" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="439" r_length="394" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E440659" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E440659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113611" e_stop="113655"/>
          <exon e_start="115852" e_stop="116245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTCCTCTCTATCGTGTTTGCATCCAGAATTTTTCTGTTACAGGTAAAACAATCCCTTTTTCCCCTTCATTTGCTTACAATTGAGATCTGTATTTGAGCATTATTTTTGCATTCGCTTTATTCGGTTTGGGTCTACCCGGTTTAAGATCCACGCAGAAATCCCAGATCTAGTTTGGCATGTATCTTTTTTATTTGTTTTGGTACCCTCAATGGATGTAATTTCGCCCATATGTATCGTTTTTAGCTAATACCGTTCTGTTTTATGTGTCTGATCTTCGGCGATCCGCGAATTGGTTGTTTATTATCCGGAAATCCTAATCTGAATTTTGGGGGAAAGCGGCTTAGAATCGGATCAGTTTCGATTCAATATTACATTAAGGTATGCCGGAGAAATGAATAGAAGTAGGAAATAGAAGATGAAAGATTGTTGCTTTTTATAAGACAATAGTGCAAACCATTTTTAACTGGGGTTAAACTGTCTTAGAACCTCGTGTGTTAGTAGTAAAGAATTCTGAAGTAGACACATCTTATTGAGCATGGAGAAGTATAAGGAATCCCAGTTTTGCTCTTGGGAATTGCTTGTTTCCCCTCCCCAAGTGTTTTATGGTATCTTTGTGTTAATTGATCGACTGTTTAAGTATCCTTGTCTTTATGGTATCTTTATGTTAATTGATTGACTGTTTATGTATCTTTGTCTTATGCGGTAAACTATAGAGTAGAGGTCTTGTAAGTACTGTAAGATCTTGTAGCAATTGTTTTTTGCTGAGGGCTTGAGTATTTATTAGGGAATAGATGTGGAAGCTTATAACTTGTTGGACTTTTGCATCTTCTGCAATAAGGGTTTTCTTTAAATGTTACCAATAGGATCAATTTCTCTGCCATATTATTGTCCACAAACAAGATATTCTATTTCTTCTCTTGGCTTAGTGTGGGAAGCTATTGAAACACTACCCAAAGAGATCTAGCAGAACAGATAAAAATGTGTCTATTTAGTTTTCTACAATTGATGAAAGCATAGGTAGATTTGAAGTCTAGTTATGTCCCATGAAGGAAATCTTCTATAATCTGCTATATTTATATCTATGAAAACCCTTTCTTATTTCATGACTCATGCTTATATAATAATATAAACCTTTATTGGAAGTCATCTCTAAAAAAATTTATCATTGTTATCCACTCTGCATAGTAGTCAATTTAGGAGAATCACTTATGTTGGAAAACATAGTTATATTATATTCAGGAGTATCCTAATGAATTTAGCTGATATTTCACAATAATATTATCTTTGATTGGATCGATGATCAATTTAGTATTTTCATCTCAATGGAGTACCTTTGCAGTTAATAGCAGTCTTGTCTGCAACGCAAGGACATTGGAACACTTACGAGTATTATGTTAAAAAAAGAGTGTAGAAGCCAACTCTAATATTTGTTACTAAAACTAGGAATCCTGATCTGGGCATCTTAACTAATTATTGGTGAGAGCAACAAGTAGAATACTGGGGTAGAGGAGAGGATTTGGATTTGCACTTTTGGGCCCATAGACTATCTAGTCATTAGCTAGTTTTAGTTATCAAGTACTTTGGTGTGTACTTTGTTGCCTTAAAAATCTCTTTCCATCTTAAAAGGGTTTATGAATTAAGCTACATTCTTTTCCTGTAGTAATTTCCCTATTATGTATAGATATATTGGATCAATTGAATGCTGAATATGAGTTATATGTTAGCTAATCCATATTGTGTTTAGATTCTTTGCCTCCTCAAATCAACTCCTATTACCTTTTAGTTACTTTTGACCTATTTAATCCTTCCCCCCTTCCCCTTTTGCAAATATAACATGTTCAGCAATAAACCATTTGTCTTTTCTTCATTATGCCTGCATTTATGATAAAGGGGAAGGTTTCTACTATATCTTTCTCTCTGGTGTATTGAAACGAACAAGCTCAAAACCATGACACGAGAAGCTCATAATATTATTTTCTCTAAAAAAATTGTATTTGCAAAGATTAATTCACCTGAAGGCTCTTATGTTATTACTTTGGCTTATTTACAATATATACATTTTTTTAAGTTTGTTTGTTGTTTGAGTTGCATTTCTGTTCTTAGGCTTTTGAACTGATTTTGGAAGAAGAGTCTCTCTTCTTTTCTAACCAAACAGGGGGTGGGGAATAGGTATTCTCTTCAATGTTTTATCTTTTTAACTGACATCTATACTAACATTGTATATGAGCATAAATGCAGTAGCTGTGAGATATCAGTAGCGGCAACAGAAAATGCCAGCCCAGAAGATTGAAACTGGTCACAATGACACAGTTCACGATGTTACTATGGACTATTATGGAAAACGTGTGGCTACAGCATCTTCTGATACCACCATAAAAATAACTGGTGTGAGCAACAATGCTGCTTCGCAACACCTTGCTACGTTGAGTGGCCATACGGGCCCTGTTTGGCAGGCTGGCTGGGCTCACCCCAAATTTGGCTCAATCCTTGCGTCCTGTTCCTATGATGGTAAGGTAATAATCTGGAAGGAAGGCAATCAGAATGAGTGGGCACAAGCTCATGTTTTTAGCGAGCACAAATCATCGGTTAATTCCATCTCCTGGGCTCCTCATGAACTTGGGCTTTGCTTGGC</genome_strand>
        <mrna_strand>ATTCTCCTCTCTATCGGGTTTGCATCCAGAATTTTTCTGTTACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTGTGAGATATCAGTAGCGGCAACAGAAAATGCCAGCCCAGAAGATTGAAACTGGTCACAATGACACAGTTCACGATGTTACTATGGACTATTATGGAAAACGTGTGGCTACAGCATCTTCTGATACCACCATAAAAATAACTGGTGTGAGCAACAATGCTACTTCACAACACCTTGCTACTTTGAGTGGTCATACCGGCCCTGTTTGGCAGGCTGCCTGGGCTCACCCCAAATTTGGCTCAATCCTTGCGTCCTGTTCCTATGATGGTAAGGTAATAATCTGGAAGGAAGGCAATCAGAATGAGTGGACACAAGCTCATGTTTTTAGCGAGCACAAATCATCGGTTAATTCCATCTCCTGGGCTCCTCATGAACTTGGGCTTTGCTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E456280" ref_strand="+" ref_description="SGN-E456280 [cSTS-29-E19]">
      <seq>tcccctctctatcgtgtttgcacccagaatttttctgttaccaggagcctgtggacatcagtagcggcaaccagataatgcccagcccagatgcttgaaactggtcacaatgaccaccagttcacgaatgttacctatggactattatggaaaacgtgtggctacagcatcttctgataccaccataaaaataacctggtgtgagccaacaatgctgcttcgcaacaccttgctactttgagtggtcataccggccctgtttggcaggctgcctgggctcaccccaaatttggctcaatccttgcgtcctgttcctatgatgggaaggtaataatctggaaggaaggcaatcagaatgagtgggcacaagcgcatgtttttagcgagcacaaatcatcggttaattccatctcctgggctcctcatgaacttgggctttgcttggcttgtggttcttctgatggtaatatttcagtgcacaccgccaggtcagatggtggttgggacactacgagaatagaccaagctcatccagttggggtaacatcagtttcatgggcgccatcaatggctcctggtcctttagttggtgccaggtgtgcttgaacctgttcaaaagctggcatctggtggnatgtgataacactgttaaggtttggaaattgtataatggtgtttggaagatggattgcttccctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="113313" stop="116796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113613" g_stop="113655" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113656" i_stop="115851" i_length="2196">
            <donor d_prob="0.999" d_score="0.91"/>
            <acceptor a_prob="0.948" a_score="0.77"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115852" g_stop="116496" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="699" r_length="655" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E456280" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E456280" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113613" e_stop="113655"/>
          <exon e_start="115852" e_stop="116496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTCTCTATCGTGTTTGCATCCAGAATTTTTCTGTTA-CAGGTAAAACAATCCCTTTTTCCCCTTCATTTGCTTACAATTGAGATCTGTATTTGAGCATTATTTTTGCATTCGCTTTATTCGGTTTGGGTCTACCCGGTTTAAGATCCACGCAGAAATCCCAGATCTAGTTTGGCATGTATCTTTTTTATTTGTTTTGGTACCCTCAATGGATGTAATTTCGCCCATATGTATCGTTTTTAGCTAATACCGTTCTGTTTTATGTGTCTGATCTTCGGCGATCCGCGAATTGGTTGTTTATTATCCGGAAATCCTAATCTGAATTTTGGGGGAAAGCGGCTTAGAATCGGATCAGTTTCGATTCAATATTACATTAAGGTATGCCGGAGAAATGAATAGAAGTAGGAAATAGAAGATGAAAGATTGTTGCTTTTTATAAGACAATAGTGCAAACCATTTTTAACTGGGGTTAAACTGTCTTAGAACCTCGTGTGTTAGTAGTAAAGAATTCTGAAGTAGACACATCTTATTGAGCATGGAGAAGTATAAGGAATCCCAGTTTTGCTCTTGGGAATTGCTTGTTTCCCCTCCCCAAGTGTTTTATGGTATCTTTGTGTTAATTGATCGACTGTTTAAGTATCCTTGTCTTTATGGTATCTTTATGTTAATTGATTGACTGTTTATGTATCTTTGTCTTATGCGGTAAACTATAGAGTAGAGGTCTTGTAAGTACTGTAAGATCTTGTAGCAATTGTTTTTTGCTGAGGGCTTGAGTATTTATTAGGGAATAGATGTGGAAGCTTATAACTTGTTGGACTTTTGCATCTTCTGCAATAAGGGTTTTCTTTAAATGTTACCAATAGGATCAATTTCTCTGCCATATTATTGTCCACAAACAAGATATTCTATTTCTTCTCTTGGCTTAGTGTGGGAAGCTATTGAAACACTACCCAAAGAGATCTAGCAGAACAGATAAAAATGTGTCTATTTAGTTTTCTACAATTGATGAAAGCATAGGTAGATTTGAAGTCTAGTTATGTCCCATGAAGGAAATCTTCTATAATCTGCTATATTTATATCTATGAAAACCCTTTCTTATTTCATGACTCATGCTTATATAATAATATAAACCTTTATTGGAAGTCATCTCTAAAAAAATTTATCATTGTTATCCACTCTGCATAGTAGTCAATTTAGGAGAATCACTTATGTTGGAAAACATAGTTATATTATATTCAGGAGTATCCTAATGAATTTAGCTGATATTTCACAATAATATTATCTTTGATTGGATCGATGATCAATTTAGTATTTTCATCTCAATGGAGTACCTTTGCAGTTAATAGCAGTCTTGTCTGCAACGCAAGGACATTGGAACACTTACGAGTATTATGTTAAAAAAAGAGTGTAGAAGCCAACTCTAATATTTGTTACTAAAACTAGGAATCCTGATCTGGGCATCTTAACTAATTATTGGTGAGAGCAACAAGTAGAATACTGGGGTAGAGGAGAGGATTTGGATTTGCACTTTTGGGCCCATAGACTATCTAGTCATTAGCTAGTTTTAGTTATCAAGTACTTTGGTGTGTACTTTGTTGCCTTAAAAATCTCTTTCCATCTTAAAAGGGTTTATGAATTAAGCTACATTCTTTTCCTGTAGTAATTTCCCTATTATGTATAGATATATTGGATCAATTGAATGCTGAATATGAGTTATATGTTAGCTAATCCATATTGTGTTTAGATTCTTTGCCTCCTCAAATCAACTCCTATTACCTTTTAGTTACTTTTGACCTATTTAATCCTTCCCCCCTTCCCCTTTTGCAAATATAACATGTTCAGCAATAAACCATTTGTCTTTTCTTCATTATGCCTGCATTTATGATAAAGGGGAAGGTTTCTACTATATCTTTCTCTCTGGTGTATTGAAACGAACAAGCTCAAAACCATGACACGAGAAGCTCATAATATTATTTTCTCTAAAAAAATTGTATTTGCAAAGATTAATTCACCTGAAGGCTCTTATGTTATTACTTTGGCTTATTTACAATATATACATTTTTTTAAGTTTGTTTGTTGTTTGAGTTGCATTTCTGTTCTTAGGCTTTTGAACTGATTTTGGAAGAAGAGTCTCTCTTCTTTTCTAACCAAACAGGGGGTGGGGAATAGGTATTCTCTTCAATGTTTTATCTTTTTAACTGACATCTATACTAACATTGTATATGAGCATAAATGCAGTAG-CTGTGAGATATCAGTAGCGGCAA-CAGAAAATG-CCAGCCCAGAAGATTGAAACTGGTCACAATGA-CAC-AGTTCACG-ATGTTA-CTATGGACTATTATGGAAAACGTGTGGCTACAGCATCTTCTGATACCACCATAAAAATAA-CTGGTGTGAG-CAACAATGCTGCTTCGCAACACCTTGCTACGTTGAGTGGCCATACGGGCCCTGTTTGGCAGGCTGGCTGGGCTCACCCCAAATTTGGCTCAATCCTTGCGTCCTGTTCCTATGATGGTAAGGTAATAATCTGGAAGGAAGGCAATCAGAATGAGTGGGCACAAGCTCATGTTTTTAGCGAGCACAAATCATCGGTTAATTCCATCTCCTGGGCTCCTCATGAACTTGGGCTTTGCTTGGCTTGTGGTTCTTCTGATGGTAATATTTCAGTGCACACCGCCAGGTCAGATGGTGGTTGGGACACTACAAGAATTGACCAAGCTCATCCAGTTGGGGTAACATCAGTTTCATGGGCGCCTTCAATGGCTCCTGGTGCTTTAGTTGGTG-CAGGTGTGCTTGAACCTGTTCAAAAGCTGGCATCTGGTGG-ATGTGATAACACTGTTAAAGTTTGGAAGTTGTATAATGGTGTTTGGAAGATGGATTGCTTCCCTG</genome_strand>
        <mrna_strand>TCCCCTCTCTATCGTGTTTGCACCCAGAATTTTTCTGTTACCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCCTGTG-GACATCAGTAGCGGCAACCAGATAATGCCCAGCCCAGATGCTTGAAACTGGTCACAATGACCACCAGTTCACGAATGTTACCTATGGACTATTATGGAAAACGTGTGGCTACAGCATCTTCTGATACCACCATAAAAATAACCTGGTGTGAGCCAACAATGCTGCTTCGCAACACCTTGCTACTTTGAGTGGTCATACCGGCCCTGTTTGGCAGGCTGCCTGGGCTCACCCCAAATTTGGCTCAATCCTTGCGTCCTGTTCCTATGATGGGAAGGTAATAATCTGGAAGGAAGGCAATCAGAATGAGTGGGCACAAGCGCATGTTTTTAGCGAGCACAAATCATCGGTTAATTCCATCTCCTGGGCTCCTCATGAACTTGGGCTTTGCTTGGCTTGTGGTTCTTCTGATGGTAATATTTCAGTGCACACCGCCAGGTCAGATGGTGGTTGGGACACTACGAGAATAGACCAAGCTCATCCAGTTGGGGTAACATCAGTTTCATGGGCGCCATCAATGGCTCCTGGTCCTTTAGTTGGTGCCAGGTGTGCTTGAACCTGTTCAAAAGCTGGCATCTGGTGGNATGTGATAACACTGTTAAGGTTTGGAAATTGTATAATGGTGTTTGGAAGATGGATTGCTTCCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E450699" ref_strand="+" ref_description="SGN-E450699 [cSTS-10-K21]">
      <seq>attttttctgttacaggagctgtgagtatcagtagcggcaacagaaaatgccagcccagaagattgaaactggtcacaatgacacagttcatgatgttactatggactattatggaaaacgtgtggctacagcatcttctgataccaccataaaaataactggtgtgagcaacaatgctgcttcacaacaccttgctactttgagtggtcataccggccctgtttggcaggctgcctgggctcaccccaaatttggctcaatccttgcgtcctgttcctatgatggtaaggtaataatctggaaggaaggcaatcagaatgagtggacacaagctcatgtttttagcgagcacaaatcatcggttaattccatctcctgggctcctcatgaacttgggctttgcttggcttgtggttcttctgatggtaatatttcagtgcataccgccaggtcagatggtggttgggacactacgagaatagaccaagctcatccagttggggtaacatcagtttcatgggcgccatcaatggctcctggtgctttagttggtgcangtgtgcttgaacctgttcaaaagctggcatctggtggatgtgataacactgttaaggtttggaagttgtataatggtgtttggaatatggattgctttcctgcacttcagatgcacactaactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="115547" stop="116819"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115852" g_stop="116519" g_length="668"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="683" r_length="667" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E450699" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E450699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115852" e_stop="116519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTGTGAGATATCAGTAGCGGCAACAGAAAATGCCAGCCCAGAAGATTGAAACTGGTCACAATGACACAGTTCACGATGTTACTATGGACTATTATGGAAAACGTGTGGCTACAGCATCTTCTGATACCACCATAAAAATAACTGGTGTGAGCAACAATGCTGCTTCGCAACACCTTGCTACGTTGAGTGGCCATACGGGCCCTGTTTGGCAGGCTGGCTGGGCTCACCCCAAATTTGGCTCAATCCTTGCGTCCTGTTCCTATGATGGTAAGGTAATAATCTGGAAGGAAGGCAATCAGAATGAGTGGGCACAAGCTCATGTTTTTAGCGAGCACAAATCATCGGTTAATTCCATCTCCTGGGCTCCTCATGAACTTGGGCTTTGCTTGGCTTGTGGTTCTTCTGATGGTAATATTTCAGTGCACACCGCCAGGTCAGATGGTGGTTGGGACACTACAAGAATTGACCAAGCTCATCCAGTTGGGGTAACATCAGTTTCATGGGCGCCTTCAATGGCTCCTGGTGCTTTAGTTGGTGCAGGTGTGCTTGAACCTGTTCAAAAGCTGGCATCTGGTGGATGTGATAACACTGTTAAAGTTTGGAAGTTGTATAATGGTGTTTGGAAGATGGATTGCTTCCCTGCACTTCAGATGCACACTAACTGG</genome_strand>
        <mrna_strand>GAGCTGTGAG-TATCAGTAGCGGCAACAGAAAATGCCAGCCCAGAAGATTGAAACTGGTCACAATGACACAGTTCATGATGTTACTATGGACTATTATGGAAAACGTGTGGCTACAGCATCTTCTGATACCACCATAAAAATAACTGGTGTGAGCAACAATGCTGCTTCACAACACCTTGCTACTTTGAGTGGTCATACCGGCCCTGTTTGGCAGGCTGCCTGGGCTCACCCCAAATTTGGCTCAATCCTTGCGTCCTGTTCCTATGATGGTAAGGTAATAATCTGGAAGGAAGGCAATCAGAATGAGTGGACACAAGCTCATGTTTTTAGCGAGCACAAATCATCGGTTAATTCCATCTCCTGGGCTCCTCATGAACTTGGGCTTTGCTTGGCTTGTGGTTCTTCTGATGGTAATATTTCAGTGCATACCGCCAGGTCAGATGGTGGTTGGGACACTACGAGAATAGACCAAGCTCATCCAGTTGGGGTAACATCAGTTTCATGGGCGCCATCAATGGCTCCTGGTGCTTTAGTTGGTGCANGTGTGCTTGAACCTGTTCAAAAGCTGGCATCTGGTGGATGTGATAACACTGTTAAGGTTTGGAAGTTGTATAATGGTGTTTGGAATATGGATTGCTTTCCTGCACTTCAGATGCACACTAACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E454195" ref_strand="+" ref_description="SGN-E454195 [cSTS-22-O12]">
      <seq>ctacttcacaacaccttgctactttgagtggtcataccggccctgtttggcaggctgcctgggctcaccccaaatttggctcaatccttgcgtcctgttcctatgatggtaaggtaataatctggaaggaaggcaatcagaatgagtggacacaagctcatgtttttagcgagcacaaatcatcggttaattccatctcctgggctcctcatgaacttgggctttgcttggcttgtggttcttctgatggtaatatttcagtgcataccgccaggtcagatggtggttgggacactacgagaatagaccaagctcatccagttggggtaacatcagtttcatgggcgccatcaatggctcctggtgctttagttggtgcaggtgtgcttgaacctgttcaaaagctggcatctggtggatgtgataacactgttaaggtttggaagttgtataatggtgtttggaagatggattgcttccctgcacttcagatgcacactaactgggtgagagatgtagcttgggcaccaaacttgggacttccaaagtctacaattgctagtgcttcagaggatggtacggttgtcatatggactgtgggaaagganggagatcagtgggagggcaaggttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="115714" stop="116947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116014" g_stop="116647" g_length="634"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="634" r_length="634" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E454195" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E454195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116014" e_stop="116647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTTCGCAACACCTTGCTACGTTGAGTGGCCATACGGGCCCTGTTTGGCAGGCTGGCTGGGCTCACCCCAAATTTGGCTCAATCCTTGCGTCCTGTTCCTATGATGGTAAGGTAATAATCTGGAAGGAAGGCAATCAGAATGAGTGGGCACAAGCTCATGTTTTTAGCGAGCACAAATCATCGGTTAATTCCATCTCCTGGGCTCCTCATGAACTTGGGCTTTGCTTGGCTTGTGGTTCTTCTGATGGTAATATTTCAGTGCACACCGCCAGGTCAGATGGTGGTTGGGACACTACAAGAATTGACCAAGCTCATCCAGTTGGGGTAACATCAGTTTCATGGGCGCCTTCAATGGCTCCTGGTGCTTTAGTTGGTGCAGGTGTGCTTGAACCTGTTCAAAAGCTGGCATCTGGTGGATGTGATAACACTGTTAAAGTTTGGAAGTTGTATAATGGTGTTTGGAAGATGGATTGCTTCCCTGCACTTCAGATGCACACTAACTGGGTGAGAGATGTAGCTTGGGCACCAAACTTGGGACTTCCAAAGTCAACAATTGCTAGTGCTTCAGAGGATGGTACGGTTGTCATATGGACTGTGGGAAAGGAGGGAGATCAGTGGGAGGGCAAGGTTCT</genome_strand>
        <mrna_strand>CTACTTCACAACACCTTGCTACTTTGAGTGGTCATACCGGCCCTGTTTGGCAGGCTGCCTGGGCTCACCCCAAATTTGGCTCAATCCTTGCGTCCTGTTCCTATGATGGTAAGGTAATAATCTGGAAGGAAGGCAATCAGAATGAGTGGACACAAGCTCATGTTTTTAGCGAGCACAAATCATCGGTTAATTCCATCTCCTGGGCTCCTCATGAACTTGGGCTTTGCTTGGCTTGTGGTTCTTCTGATGGTAATATTTCAGTGCATACCGCCAGGTCAGATGGTGGTTGGGACACTACGAGAATAGACCAAGCTCATCCAGTTGGGGTAACATCAGTTTCATGGGCGCCATCAATGGCTCCTGGTGCTTTAGTTGGTGCAGGTGTGCTTGAACCTGTTCAAAAGCTGGCATCTGGTGGATGTGATAACACTGTTAAGGTTTGGAAGTTGTATAATGGTGTTTGGAAGATGGATTGCTTCCCTGCACTTCAGATGCACACTAACTGGGTGAGAGATGTAGCTTGGGCACCAAACTTGGGACTTCCAAAGTCTACAATTGCTAGTGCTTCAGAGGATGGTACGGTTGTCATATGGACTGTGGGAAAGGANGGAGATCAGTGGGAGGGCAAGGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E582908" ref_strand="+" ref_description="SGN-E582908 [8541]">
      <seq>gtttggcaggctgcctgggctcaccccaaatttggctcaatccttgcgtcctgttcctatgatgggaaggtaataatctggaaggaaggcaatcagaatgagtgggcacaagcgcatgtttttagcgagcacaaatcatcggttaattccatctcctgggctcctcatgaacttgggctttgcttggcttgtggttcttctgatggtaatatttcagtgcacaccgccaggtcagatggtggttgggacactacgagaatagaccaagctcatccagttggggtaacatcagtttcatgggcgccatcaatggctcctggtgctttagttggtgcaggtgtgcttgaacctgttcaaaagctggcatctggtggatgtgataacactgtcaaggtttggaaattgtataatggtgtttggaagatggattgcttccctgcacttcagatgcacactaactgggtgagagatgtaagcttgggcaccaaacttgggacttccaaagtcaacaattgctagtgcttcagagatggtacggttgtcatatggactgtgggaaaagaagggagatcagtggcgagcggcaaggttcttaaagacttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="115758" stop="116959"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116058" g_stop="116659" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="605" r_length="605" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E582908" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E582908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116058" e_stop="116659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGGCAGGCTGGCTGGGCTCACCCCAAATTTGGCTCAATCCTTGCGTCCTGTTCCTATGATGGTAAGGTAATAATCTGGAAGGAAGGCAATCAGAATGAGTGGGCACAAGCTCATGTTTTTAGCGAGCACAAATCATCGGTTAATTCCATCTCCTGGGCTCCTCATGAACTTGGGCTTTGCTTGGCTTGTGGTTCTTCTGATGGTAATATTTCAGTGCACACCGCCAGGTCAGATGGTGGTTGGGACACTACAAGAATTGACCAAGCTCATCCAGTTGGGGTAACATCAGTTTCATGGGCGCCTTCAATGGCTCCTGGTGCTTTAGTTGGTGCAGGTGTGCTTGAACCTGTTCAAAAGCTGGCATCTGGTGGATGTGATAACACTGTTAAAGTTTGGAAGTTGTATAATGGTGTTTGGAAGATGGATTGCTTCCCTGCACTTCAGATGCACACTAACTGGGTGAGAGATGT-AGCTTGGGCACCAAACTTGGGACTTCCAAAGTCAACAATTGCTAGTGCTTCAGAGGATGGTACGGTTGTCATATGGACTGTGGG-AAAGGAGGGAGATCAGTGG-GAG-GGCAAGGTTCTAAAAGACTTCAA</genome_strand>
        <mrna_strand>GTTTGGCAGGCTGCCTGGGCTCACCCCAAATTTGGCTCAATCCTTGCGTCCTGTTCCTATGATGGGAAGGTAATAATCTGGAAGGAAGGCAATCAGAATGAGTGGGCACAAGCGCATGTTTTTAGCGAGCACAAATCATCGGTTAATTCCATCTCCTGGGCTCCTCATGAACTTGGGCTTTGCTTGGCTTGTGGTTCTTCTGATGGTAATATTTCAGTGCACACCGCCAGGTCAGATGGTGGTTGGGACACTACGAGAATAGACCAAGCTCATCCAGTTGGGGTAACATCAGTTTCATGGGCGCCATCAATGGCTCCTGGTGCTTTAGTTGGTGCAGGTGTGCTTGAACCTGTTCAAAAGCTGGCATCTGGTGGATGTGATAACACTGTCAAGGTTTGGAAATTGTATAATGGTGTTTGGAAGATGGATTGCTTCCCTGCACTTCAGATGCACACTAACTGGGTGAGAGATGTAAGCTTGGGCACCAAACTTGGGACTTCCAAAGTCAACAATTGCTAGTGCTTCAGA-GATGGTACGGTTGTCATATGGACTGTGGGAAAAGAAGGGAGATCAGTGGCGAGCGGCAAGGTTCTTAAAGACTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E717239" ref_strand="+" ref_description="SGN-E717239 [FB19CC02]">
      <seq>gtttttaacaaacacatatcatcgggtaattccatctcctgggctcctcatgaacttgggctttgcttggcttgtggttcttctgatggtaatatttcagtgcacaccgccaggtcagatggtggttgggacactacaagaattgaccaagctcatccagttggggtaacatcagtttcatgggcgccttcaatggctcctggtgctttagttggtgcaggtgtgcttgaacctgttcaaaagctggcatctggtggatgtgataacactgttaaagtttggaagttgtataatggtgtttggaagatggattgcttccctgcacttcagatgcacactaactgggtgagagatgtagcttgggcaccaaacttgggacttccaaagtcaacaattgctagtgcttcagaggatggtacggttgtcatatggactgtgggaaaggagggagatcaccgggagggcaaggttctaaaagacttcaaatctcctgtttggagagtctcatggtctcttaccggaaacttgttggcagttgcagctggggataacaatgtcactttgtggaaagaagctgttgatggggagtggcaacaggcctccactgttgaccaatagagctggaacttgggaagtaatagaattcatgtttttgtgttctctttctaccattcagacctttttcctaactgaggcctgagtgagagttagccctttaattaaggactgtttactttgatttgattcctctcgtttactcagtatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="115875" stop="117242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116175" g_stop="116942" g_length="768"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="768" r_length="768" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E717239" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116175" e_stop="116942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTAGCGAGCACAAATCATCGGTTAATTCCATCTCCTGGGCTCCTCATGAACTTGGGCTTTGCTTGGCTTGTGGTTCTTCTGATGGTAATATTTCAGTGCACACCGCCAGGTCAGATGGTGGTTGGGACACTACAAGAATTGACCAAGCTCATCCAGTTGGGGTAACATCAGTTTCATGGGCGCCTTCAATGGCTCCTGGTGCTTTAGTTGGTGCAGGTGTGCTTGAACCTGTTCAAAAGCTGGCATCTGGTGGATGTGATAACACTGTTAAAGTTTGGAAGTTGTATAATGGTGTTTGGAAGATGGATTGCTTCCCTGCACTTCAGATGCACACTAACTGGGTGAGAGATGTAGCTTGGGCACCAAACTTGGGACTTCCAAAGTCAACAATTGCTAGTGCTTCAGAGGATGGTACGGTTGTCATATGGACTGTGGGAAAGGAGGGAGATCAGTGGGAGGGCAAGGTTCTAAAAGACTTCAAATCTCCTGTTTGGAGAGTCTCATGGTCTCTTACCGGAAACTTGTTGGCAGTTGCAGCTGGGGATAACAATGTCACTTTGTGGAAAGAAGCTGTTGATGGGGAGTGGCAACAGGCCTCCACTGTTGACCAATAGAGCTGGAACTTGGGAAGTAATAGAATTCATGTTTTTGTGTTCTCTTTCTACCATTCAGACCTTTTTCCTAGCTGAGGCCTGAGTGAGAGTTAGCCCTTTAATTAAGGACTGTTTACTTTGATTTGATTCTTCTCGTTTACTCAGTATGCA</genome_strand>
        <mrna_strand>GTTTTTAACAAACACATATCATCGGGTAATTCCATCTCCTGGGCTCCTCATGAACTTGGGCTTTGCTTGGCTTGTGGTTCTTCTGATGGTAATATTTCAGTGCACACCGCCAGGTCAGATGGTGGTTGGGACACTACAAGAATTGACCAAGCTCATCCAGTTGGGGTAACATCAGTTTCATGGGCGCCTTCAATGGCTCCTGGTGCTTTAGTTGGTGCAGGTGTGCTTGAACCTGTTCAAAAGCTGGCATCTGGTGGATGTGATAACACTGTTAAAGTTTGGAAGTTGTATAATGGTGTTTGGAAGATGGATTGCTTCCCTGCACTTCAGATGCACACTAACTGGGTGAGAGATGTAGCTTGGGCACCAAACTTGGGACTTCCAAAGTCAACAATTGCTAGTGCTTCAGAGGATGGTACGGTTGTCATATGGACTGTGGGAAAGGAGGGAGATCACCGGGAGGGCAAGGTTCTAAAAGACTTCAAATCTCCTGTTTGGAGAGTCTCATGGTCTCTTACCGGAAACTTGTTGGCAGTTGCAGCTGGGGATAACAATGTCACTTTGTGGAAAGAAGCTGTTGATGGGGAGTGGCAACAGGCCTCCACTGTTGACCAATAGAGCTGGAACTTGGGAAGTAATAGAATTCATGTTTTTGTGTTCTCTTTCTACCATTCAGACCTTTTTCCTAACTGAGGCCTGAGTGAGAGTTAGCCCTTTAATTAAGGACTGTTTACTTTGATTTGATTCCTCTCGTTTACTCAGTATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E595467" ref_strand="+" ref_description="SGN-E595467 [38741]">
      <seq>gagatgtagcttgggcaccaaacttgggacttccaaagtctacaattgctagtgcttcagaggatggtacggttgtcatatggactgtgggaaaggagggagatcagtgggagggcaaggttcttaaagacttcaaatctcctgtttggagagtctcatggtctcttaccggaaacttgttggcagttgcagctggggataacaatgtcactttgtggaaagaagcagttgatggggagtggcaacaggcctccactgttgaccaatagagctggaacttgggaagtaatataattcaagtttttgtgttctctttctaccattcagacctttttcctagctgaggcctgagtgagagttagccctttaattaaggactgtttactttgatttgattcttctccttttactcagtatgcatccaatttcagttaagctatagacctttttctttctgaaaaaaaaagataagaaaagagaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="116224" stop="117279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116524" g_stop="116978" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="456" r_length="456" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="458" polyA_stop="468"/>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E595467" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E595467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116524" e_stop="116978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATGTAGCTTGGGCACCAAACTTGGGACTTCCAAAGTCAACAATTGCTAGTGCTTCAGAGGATGGTACGGTTGTCATATGGACTGTGGGAAAGGAGGGAGATCAGTGGGAGGGCAAGGTTCTAAAAGACTTCAAATCTCCTGTTTGGAGAGTCTCATGGTCTCTTACCGGAAACTTGTTGGCAGTTGCAGCTGGGGATAACAATGTCACTTTGTGGAAAGAAGCTGTTGATGGGGAGTGGCAACAGGCCTCCACTGTTGACCAATAGAGCTGGAACTTGGGAAGTAATAGAATTCATGTTTTTGTGTTCTCTTTCTACCATTCAGACCTTTTTCCTAGCTGAGGCCTGAGTGAGAGTTAGCCCTTTAATTAAGGACTGTTTACTTTGATTTGATTCTTCT-CGTTTACTCAGTATGCATTCAATTTCACTTCAGCTATAGACCTTTTTCTTTCT</genome_strand>
        <mrna_strand>GAGATGTAGCTTGGGCACCAAACTTGGGACTTCCAAAGTCTACAATTGCTAGTGCTTCAGAGGATGGTACGGTTGTCATATGGACTGTGGGAAAGGAGGGAGATCAGTGGGAGGGCAAGGTTCTTAAAGACTTCAAATCTCCTGTTTGGAGAGTCTCATGGTCTCTTACCGGAAACTTGTTGGCAGTTGCAGCTGGGGATAACAATGTCACTTTGTGGAAAGAAGCAGTTGATGGGGAGTGGCAACAGGCCTCCACTGTTGACCAATAGAGCTGGAACTTGGGAAGTAATATAATTCAAGTTTTTGTGTTCTCTTTCTACCATTCAGACCTTTTTCCTAGCTGAGGCCTGAGTGAGAGTTAGCCCTTTAATTAAGGACTGTTTACTTTGATTTGATTCTTCTCCTTTTACTCAGTATGCATCCAATTTCAGTTAAGCTATAGACCTTTTTCTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E236755" ref_strand="+" ref_description="SGN-E236755 [cLEL-7-O12](-)">
      <seq>caattgctagtgcttcagaggatggtacggttgtcatatggactgtgggaaaggagggagatcagtgggagggcaaggttctaaaagacttcaaatctcctgtttggagagtctcatggtctcttaccggaaacttgttggcagttgcagctggggataacaatgtcactttgtggaaagaagctgttgatggggagtggcaacaggcctccactgttgaccaatagagctggaacttgggaagtaatagaattcatgtttttgtgttctctttctaccattcagacctttttcctagctgaggcctgagtgagagttagccctttaattaaggactgtttactttgatttgattcttctcgtttactcagtatgcattcaatttcacttcagctatagacctttttctttctgcctgttttgtgtatgcctttttatgttgaattttcaatatacttggtgattaaatgtgtcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="116266" stop="117340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116566" g_stop="117041" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="477" polyA_stop="491"/>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E236755" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116566" e_stop="117041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTGCTAGTGCTTCAGAGGATGGTACGGTTGTCATATGGACTGTGGGAAAGGAGGGAGATCAGTGGGAGGGCAAGGTTCTAAAAGACTTCAAATCTCCTGTTTGGAGAGTCTCATGGTCTCTTACCGGAAACTTGTTGGCAGTTGCAGCTGGGGATAACAATGTCACTTTGTGGAAAGAAGCTGTTGATGGGGAGTGGCAACAGGCCTCCACTGTTGACCAATAGAGCTGGAACTTGGGAAGTAATAGAATTCATGTTTTTGTGTTCTCTTTCTACCATTCAGACCTTTTTCCTAGCTGAGGCCTGAGTGAGAGTTAGCCCTTTAATTAAGGACTGTTTACTTTGATTTGATTCTTCTCGTTTACTCAGTATGCATTCAATTTCACTTCAGCTATAGACCTTTTTCTTTCTGCCTGTTTTGTGTATGCCTTTTTATGTTGAATTTTCAATATACTTGGTGATTAAATGTGTCAG</genome_strand>
        <mrna_strand>CAATTGCTAGTGCTTCAGAGGATGGTACGGTTGTCATATGGACTGTGGGAAAGGAGGGAGATCAGTGGGAGGGCAAGGTTCTAAAAGACTTCAAATCTCCTGTTTGGAGAGTCTCATGGTCTCTTACCGGAAACTTGTTGGCAGTTGCAGCTGGGGATAACAATGTCACTTTGTGGAAAGAAGCTGTTGATGGGGAGTGGCAACAGGCCTCCACTGTTGACCAATAGAGCTGGAACTTGGGAAGTAATAGAATTCATGTTTTTGTGTTCTCTTTCTACCATTCAGACCTTTTTCCTAGCTGAGGCCTGAGTGAGAGTTAGCCCTTTAATTAAGGACTGTTTACTTTGATTTGATTCTTCTCGTTTACTCAGTATGCATTCAATTTCACTTCAGCTATAGACCTTTTTCTTTCTGCCTGTTTTGTGTATGCCTTTTTATGTTGAATTTTCAATATACTTGGTGATTAAATGTGTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E593032" ref_strand="+" ref_description="SGN-E593032 [36254]">
      <seq>tttttttttttttaataaaacctgacacatttaatcacctagtatattcaaaattcaacataaaaaggcagaaagaaaaaggtctatagcttaactgaaattggatgcatactgagtaaaaggagaagaatcaaatcaaagtaaacagtccttaattaaagggctaactctcactcaggcctcagctaggaaaaaggtctgaatggtagaaagagaacacaaaaacttgaattatattacttcccaagttccagctctattggtcaacagtggaggcctgttgccactccccatcaactgcttctttccacaaagtgacattgttatccccagctgcaactgccaacaagtttccggtaagagaccatgagactctccaaacaggagatttgaagtctttaagaaccttgncctcccattgatctccctccttttcccacagttccatatgacgaaccgtaccattccctctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="119540" stop="116279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117062" g_stop="116579" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E593032" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.019" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E593032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117062" e_stop="116579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTGGTCATATAATAAAACCTGACACATTTAATCACCAAGTATATTGAAAATTCAACATAAAAAGGCATACACAAAACAGGCAGAAAGAAAAAGGTCTATAGCTGAAGTGAAATTGAATGCATACTGAGT-AAACGAGAAGAATCAAATCAAAGTAAACAGTCCTTAATTAAAGGGCTAACTCTCACTCAGGCCTCAGCTAGGAAAAAGGTCTGAATGGTAGAAAGAGAACACAAAAACATGAATTCTATTACTTCCCAAGTTCCAGCTCTATTGGTCAACAGTGGAGGCCTGTTGCCACTCCCCATCAACAGCTTCTTTCCACAAAGTGACATTGTTATCCCCAGCTGCAACTGCCAACAAGTTTCCGGTAAGAGACCATGAGACTCTCCAAACAGGAGATTTGAAGTCTTTTAGAACCTTGCCCTCCCACTGATCTCCCTCC-TTTCCCACAG-TCCATATGAC-AACCGTACCA-T-CCTCTGAA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTAATAAAACCTGACACATTTAATCACCTAGTATATTCAAAATT---C-----AA--CAT----AAAA-AGGCAGAAAGAAAAAGGTCTATAGCTTAACTGAAATTGGATGCATACTGAGTAAAAGGAGAAGAATCAAATCAAAGTAAACAGTCCTTAATTAAAGGGCTAACTCTCACTCAGGCCTCAGCTAGGAAAAAGGTCTGAATGGTAGAAAGAGAACACAAAAACTTGAATTATATTACTTCCCAAGTTCCAGCTCTATTGGTCAACAGTGGAGGCCTGTTGCCACTCCCCATCAACTGCTTCTTTCCACAAAGTGACATTGTTATCCCCAGCTGCAACTGCCAACAAGTTTCCGGTAAGAGACCATGAGACTCTCCAAACAGGAGATTTGAAGTCTTTAAGAACCTTGNCCTCCCATTGATCTCCCTCCTTTTCCCACAGTTCCATATGACGAACCGTACCATTCCCTCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E236852" ref_strand="+" ref_description="SGN-E236852 [cLEL-7-O22](-)">
      <seq>caaggttctaaaagacttcaaatctcctgtttggagagtctcatggtctcttaccggaaacttgttggcagttgcagctggggataacaatgtcactttgtggaaagaagctgttgatggggagtggcaacaggcctccactgttgaccaatagagctggaacttgggaagtaatagaattcatgtttttgtgttctctttcnaccattcagacctttttcctagctgaggcctgagtgagagttagccctttaattaaggactgtttactttgatttgattcttctcgtttactcagtatgcattcaatttcacttcagctatagacctttttctttctgcctgttttgtgtatgcctttttatgttgaattttcaatatacttggtgattaaatgtgtcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="116339" stop="117340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116639" g_stop="117041" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="403" r_length="403" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="404" polyA_stop="418"/>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E236852" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116639" e_stop="117041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGTTCTAAAAGACTTCAAATCTCCTGTTTGGAGAGTCTCATGGTCTCTTACCGGAAACTTGTTGGCAGTTGCAGCTGGGGATAACAATGTCACTTTGTGGAAAGAAGCTGTTGATGGGGAGTGGCAACAGGCCTCCACTGTTGACCAATAGAGCTGGAACTTGGGAAGTAATAGAATTCATGTTTTTGTGTTCTCTTTCTACCATTCAGACCTTTTTCCTAGCTGAGGCCTGAGTGAGAGTTAGCCCTTTAATTAAGGACTGTTTACTTTGATTTGATTCTTCTCGTTTACTCAGTATGCATTCAATTTCACTTCAGCTATAGACCTTTTTCTTTCTGCCTGTTTTGTGTATGCCTTTTTATGTTGAATTTTCAATATACTTGGTGATTAAATGTGTCAG</genome_strand>
        <mrna_strand>CAAGGTTCTAAAAGACTTCAAATCTCCTGTTTGGAGAGTCTCATGGTCTCTTACCGGAAACTTGTTGGCAGTTGCAGCTGGGGATAACAATGTCACTTTGTGGAAAGAAGCTGTTGATGGGGAGTGGCAACAGGCCTCCACTGTTGACCAATAGAGCTGGAACTTGGGAAGTAATAGAATTCATGTTTTTGTGTTCTCTTTCNACCATTCAGACCTTTTTCCTAGCTGAGGCCTGAGTGAGAGTTAGCCCTTTAATTAAGGACTGTTTACTTTGATTTGATTCTTCTCGTTTACTCAGTATGCATTCAATTTCACTTCAGCTATAGACCTTTTTCTTTCTGCCTGTTTTGTGTATGCCTTTTTATGTTGAATTTTCAATATACTTGGTGATTAAATGTGTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E315514" ref_strand="+" ref_description="SGN-E315514 [cTOA-22-N22]">
      <seq>ccaatttcatctatttccctctctctttcttcaaagcttgagcggtttatctcgaattttccgtagggttcttctctgatcgctttcaactttcgataacagagaaacctagcaatgtcatcgtcactccatactgaagattctcaatggaaaaaccctagcatttatagccgcaaggacaaatcgctcggtcttctttgctccaatttcttgaagctatgtgatcgggaaggggtggactccaccattggtttggacaatgctgcagatcaattaggtgtcgagaggcgtcgcatttatgatattgtcaatattttggaaagtgttggggttttgtcaagaaaagctaagaatcagtatagatggaatgggtataatgcaatttctaaggctgtagatttgcttaagaaagaaggactaaaagatctgtccactgtctcctccacttgccacaatgtttcaaatgtcatagcttgtaacaattcagatgttaaggaaaaaggagaaggcaagactgctggatcacataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="120363" stop="123656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120663" g_stop="120868" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120869" i_stop="122608" i_length="1740">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122609" g_stop="122679" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="277" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="122680" i_stop="122794" i_length="115">
            <donor d_prob="0.404" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="122795" g_stop="122847" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="330" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="122848" i_stop="122918" i_length="71">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="122919" g_stop="122996" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="408" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="122997" i_stop="123070" i_length="74">
            <donor d_prob="0.398" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="123071" g_stop="123127" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="465" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="123128" i_stop="123290" i_length="163">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="123291" g_stop="123356" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="531" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E315514" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315514" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120663" e_stop="120868"/>
          <exon e_start="122609" e_stop="122679"/>
          <exon e_start="122795" e_stop="122847"/>
          <exon e_start="122919" e_stop="122996"/>
          <exon e_start="123071" e_stop="123127"/>
          <exon e_start="123291" e_stop="123356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATTTCATCTATTTCCCTCTCTCTTTCTTCAAAGCTTGAGCGGTTTATCTCGAATTTTCCGTAGGGTTCTTCTCTGATCGCTTTCAACTTTCGATAACAGAGAAACCTAGCAATGTCATCGTCACTCCATACTGAAGATTCTCAATGGAAAAACCCTAGCATTTATAGCCGCAAGGACAAATCGCTCGGTCTTCTTTGCTCCAAGTAATCTCTCTCTTCTTTTCTTTTGCATTTGTGTTTTATGCCTGATTCATAGTCCTAAGCGTATCTACGCCACAACTCGATCTTAGAACGAGATGTTTATGTGAAATACGTAGTAAGTATACTAGTCGTGTTAGTGTAAGTGATTGATTGATGAGAAAATGTTGATGCTCGAGGAATTTTAGGGTTTTGAAATAATTTTGACTTTAAGATTCTGATTAAGGGTGACGAATTAAATAAATTCTATATGGAAACTAAAGAAAAATCCTTAAGAAGCACAAACAGATCCAAGATTTGAATTTATGGGTTGCCATAGCAGTTTCAAGTTGATATATCATATTAATTGAGTTCACGATTAATAAATATTTAGTGGATATACATAGAATTCTTGAAACTTTATACATTTATACTCCCTCTATTCCAAAATAAGCGGTGTTTTAGCCTTTTATTTTGTTTCCAAATAAGTGGTGCATTAGGATTTCAAAAAGGAATTGACCTTATTCTTCCATGTTTTAGGATTTTAAGAAGGAATTGATCTTATTCTTCCAAAATTACCCTTCTTTAGTAGTTTTACACTACTAAAGAATCATTTTTTTGGATGACAAGGGAAACTCGCAGTAGCTACCCTTTGGTTGTGCACTGCGCACACGGTAAAAATCTCGCTCCTATGCAATAGCTCGTAAATCACATAGGAGAGGTAACTCACACTAGACAAGTCCGGTGCAACGAGCTCAACCCAGAAGCAAACCCCTTGCTTCCGCTGGCAAGGGGTTTCAAACTTGAGACCTCCAATATGGAAGTCCCAAGCCCAAACCACTGGGCCATCCCGAAGGGGTACACCATTAAAGAATCATTTCTTTCTTCAAGGCATACATTTAATTAGAGGTAAGTTTCTAAGGCATTTAATTAGGGGTAAGTTTCTACTTATTTTTGAACTGAGGGAGTATACCAGAATTTATTAGGATTCCCGTGAACCCACACACAACATGGATCTGCCTTGGGGTCGAGAGTGCAAATGCTCATAGTTCGATTGAATTCAATTGAACGAACTCAAGTCATAGTCTCATAGACATTAGTTTCGTATACTCCCAACTCAAAAACACTCTATAAGGAATTAAACAAAACCAAGAGAAGTTTAATAGATATCATCATGACAATCAAAGAGAAATGCTCGGATTGGGAATGAAGGGTTTTATCCTCTCTTTTTTTTCCCATTCTTTCTTCATCTCCTCTCTTCGTGAGCTTCCTCAAGGGGTTCTCTTTAACTTGGAGCCGTAAATATGTTTATAACCTCCTTGGAGTCACTTTCTATCGGAACCTTCATGTTTATAGAATGCAAGGAAGTCCTTTTTTATAGCGACTTAGGGACTTCTGGCTGGCTTAATTTGTTGGAGAGACACGTTGTTGGTTTTCTAGCTCAGCAGCTCTGAGCAACTATTTTGCAAATCTTTAGGAAATTGAGCATGTCCTTTGTAGGAGTTTTATCATGTCTCAGGCTCTCAGCTCGTTGGAAAGTTTTGAATATTAGTTTTTGAAGTTGAGAGATTTTTTATCTGGTATATTGATTGTATGTTCTTTGTCAATTTTTTTTGTTTCCTTCATCTACAAAATTAGGTAGAAATGTGTGGAGGAAGCTGATGATATGCCTTAAAAACATAAAAACCCAAGTAAAAGATCTGTACTTTTTCACTATAAATCAGCATATCATTACTTTCTTGACCTGATAAATTTTGTACTATTCAGTTTCTTGAAGCTATGTGATCGGGAAGGGGTGGACTCCACCATTGGTTTGGACAATGCTGCAGATCAATTAGGTCTTTGCCCTGTCTTCTCATCTACAAGTCCTCATTTTGTCTTCCCAACCGTGTCAACACCAATACGCAGATTTCTTTTTGAATATTATCACACAGAATCTCTTTGTGGTTGTAGGTGTCGAGAGGCGTCGCATTTATGATATTGTCAATATTTTGGAAAGTGTTGGGGTAATTCTTTATCTTTGGATCTTCCTCTCATAATCTTTATATGATTGAATGACTAAGGCAATTTATTTCAGGTTTTGTCAAGAAAAGCTAAGAATCAGTATAGATGGAATGGGTATAATGCAATTTCTAAGGCTGTAGATTTGCTTAAGGTAGTTGATATGCATTTTTCCTTGTCTCATATGAACATGTGCTGGGAATTTGATATTATTTGCTTATTTTGTAGAAAGAAGGACTAAAAGATCTGTCCACTGTCTCCTCCACTTGCCACAATGTTTCAAATGTATGTACACCATGTTCTTTATTTGTCCACCCTTCACCACAATGAGCCATCTATGTAGGGTGATTTGGAGTGGGACTGTAATAGTTCAAATGTGGATATTCTCCCATTAGTTCACTCAGTTAGTTACTTTGGTTTGCTCTGCGATTGCACCTTCTTCTACTAGGTCATAGCTTGTAACAATTCAGATGTTAAGGAAAAAGGAGAAGGCAAGACTGCTGGATCACATAAA</genome_strand>
        <mrna_strand>CCAATTTCATCTATTTCCCTCTCTCTTTCTTCAAAGCTTGAGCGGTTTATCTCGAATTTTCCGTAGGGTTCTTCTCTGATCGCTTTCAACTTTCGATAACAGAGAAACCTAGCAATGTCATCGTCACTCCATACTGAAGATTCTCAATGGAAAAACCCTAGCATTTATAGCCGCAAGGACAAATCGCTCGGTCTTCTTTGCTCCAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTTGAAGCTATGTGATCGGGAAGGGGTGGACTCCACCATTGGTTTGGACAATGCTGCAGATCAATTAG...................................................................................................................GTGTCGAGAGGCGTCGCATTTATGATATTGTCAATATTTTGGAAAGTGTTGGG.......................................................................GTTTTGTCAAGAAAAGCTAAGAATCAGTATAGATGGAATGGGTATAATGCAATTTCTAAGGCTGTAGATTTGCTTAAG..........................................................................AAAGAAGGACTAAAAGATCTGTCCACTGTCTCCTCCACTTGCCACAATGTTTCAAAT...................................................................................................................................................................GTCATAGCTTGTAACAATTCAGATGTTAAGGAAAAAGGAGAAGGCAAGACTGCTGGATCACATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E314523" ref_strand="+" ref_description="SGN-E314523 [cTOB-1-O9]">
      <seq>tctctttcttcaaagcttgagcggtttatctcgaattttccgtagggttcttctctgatcgctttcaactttcgataacagagaaacctagcaatgtcatcgtcactccatactgaagattctcaatggaaaaaccctagcatttatagccgcaaggacaaatcgctcggtcttctttgctccaagtagaaatgtgtggaggaagctgatgatatgccttaaaaacataaaaacccaatttcttgaagctatgtgatcgggaaggggtggactccaccattggtttggacaatgctgcagatcaattaggtgtcgagaggcgtcgcatttatgatattgtcaatattttggaaagtgttggggttttgtcaagaaaagctaagaatcagtatagatggaatgggtataatgcaatttctaaggctgtagatttgcttaagaaagaaggactaaaagatctgtccactgtctcctccacttgccacaatgtttcaaatgtcatagcttgtaacaattcagatgttaaggaaaaaggagaaggcaagactgctggatcacataaaattgacaaccggaaggagaagtctttgatgattctagcacaaaattttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="120384" stop="123858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120684" g_stop="120868" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120869" i_stop="122479" i_length="1611">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122480" g_stop="122532" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="238" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="122533" i_stop="122608" i_length="76">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="122609" g_stop="122679" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="309" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="122680" i_stop="122794" i_length="115">
            <donor d_prob="0.404" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="122795" g_stop="122847" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="362" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="122848" i_stop="122918" i_length="71">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122919" g_stop="122996" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="440" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="122997" i_stop="123070" i_length="74">
            <donor d_prob="0.398" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="123071" g_stop="123127" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="497" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="123128" i_stop="123290" i_length="163">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="123291" g_stop="123360" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="567" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="123361" i_stop="123512" i_length="152">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="123513" g_stop="123558" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="613" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E314523" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314523" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120684" e_stop="120868"/>
          <exon e_start="122480" e_stop="122532"/>
          <exon e_start="122609" e_stop="122679"/>
          <exon e_start="122795" e_stop="122847"/>
          <exon e_start="122919" e_stop="122996"/>
          <exon e_start="123071" e_stop="123127"/>
          <exon e_start="123291" e_stop="123360"/>
          <exon e_start="123513" e_stop="123558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTTCTTCAAAGCTTGAGCGGTTTATCTCGAATTTTCCGTAGGGTTCTTCTCTGATCGCTTTCAACTTTCGATAACAGAGAAACCTAGCAATGTCATCGTCACTCCATACTGAAGATTCTCAATGGAAAAACCCTAGCATTTATAGCCGCAAGGACAAATCGCTCGGTCTTCTTTGCTCCAAGTAATCTCTCTCTTCTTTTCTTTTGCATTTGTGTTTTATGCCTGATTCATAGTCCTAAGCGTATCTACGCCACAACTCGATCTTAGAACGAGATGTTTATGTGAAATACGTAGTAAGTATACTAGTCGTGTTAGTGTAAGTGATTGATTGATGAGAAAATGTTGATGCTCGAGGAATTTTAGGGTTTTGAAATAATTTTGACTTTAAGATTCTGATTAAGGGTGACGAATTAAATAAATTCTATATGGAAACTAAAGAAAAATCCTTAAGAAGCACAAACAGATCCAAGATTTGAATTTATGGGTTGCCATAGCAGTTTCAAGTTGATATATCATATTAATTGAGTTCACGATTAATAAATATTTAGTGGATATACATAGAATTCTTGAAACTTTATACATTTATACTCCCTCTATTCCAAAATAAGCGGTGTTTTAGCCTTTTATTTTGTTTCCAAATAAGTGGTGCATTAGGATTTCAAAAAGGAATTGACCTTATTCTTCCATGTTTTAGGATTTTAAGAAGGAATTGATCTTATTCTTCCAAAATTACCCTTCTTTAGTAGTTTTACACTACTAAAGAATCATTTTTTTGGATGACAAGGGAAACTCGCAGTAGCTACCCTTTGGTTGTGCACTGCGCACACGGTAAAAATCTCGCTCCTATGCAATAGCTCGTAAATCACATAGGAGAGGTAACTCACACTAGACAAGTCCGGTGCAACGAGCTCAACCCAGAAGCAAACCCCTTGCTTCCGCTGGCAAGGGGTTTCAAACTTGAGACCTCCAATATGGAAGTCCCAAGCCCAAACCACTGGGCCATCCCGAAGGGGTACACCATTAAAGAATCATTTCTTTCTTCAAGGCATACATTTAATTAGAGGTAAGTTTCTAAGGCATTTAATTAGGGGTAAGTTTCTACTTATTTTTGAACTGAGGGAGTATACCAGAATTTATTAGGATTCCCGTGAACCCACACACAACATGGATCTGCCTTGGGGTCGAGAGTGCAAATGCTCATAGTTCGATTGAATTCAATTGAACGAACTCAAGTCATAGTCTCATAGACATTAGTTTCGTATACTCCCAACTCAAAAACACTCTATAAGGAATTAAACAAAACCAAGAGAAGTTTAATAGATATCATCATGACAATCAAAGAGAAATGCTCGGATTGGGAATGAAGGGTTTTATCCTCTCTTTTTTTTCCCATTCTTTCTTCATCTCCTCTCTTCGTGAGCTTCCTCAAGGGGTTCTCTTTAACTTGGAGCCGTAAATATGTTTATAACCTCCTTGGAGTCACTTTCTATCGGAACCTTCATGTTTATAGAATGCAAGGAAGTCCTTTTTTATAGCGACTTAGGGACTTCTGGCTGGCTTAATTTGTTGGAGAGACACGTTGTTGGTTTTCTAGCTCAGCAGCTCTGAGCAACTATTTTGCAAATCTTTAGGAAATTGAGCATGTCCTTTGTAGGAGTTTTATCATGTCTCAGGCTCTCAGCTCGTTGGAAAGTTTTGAATATTAGTTTTTGAAGTTGAGAGATTTTTTATCTGGTATATTGATTGTATGTTCTTTGTCAATTTTTTTTGTTTCCTTCATCTACAAAATTAGGTAGAAATGTGTGGAGGAAGCTGATGATATGCCTTAAAAACATAAAAACCCAAGTAAAAGATCTGTACTTTTTCACTATAAATCAGCATATCATTACTTTCTTGACCTGATAAATTTTGTACTATTCAGTTTCTTGAAGCTATGTGATCGGGAAGGGGTGGACTCCACCATTGGTTTGGACAATGCTGCAGATCAATTAGGTCTTTGCCCTGTCTTCTCATCTACAAGTCCTCATTTTGTCTTCCCAACCGTGTCAACACCAATACGCAGATTTCTTTTTGAATATTATCACACAGAATCTCTTTGTGGTTGTAGGTGTCGAGAGGCGTCGCATTTATGATATTGTCAATATTTTGGAAAGTGTTGGGGTAATTCTTTATCTTTGGATCTTCCTCTCATAATCTTTATATGATTGAATGACTAAGGCAATTTATTTCAGGTTTTGTCAAGAAAAGCTAAGAATCAGTATAGATGGAATGGGTATAATGCAATTTCTAAGGCTGTAGATTTGCTTAAGGTAGTTGATATGCATTTTTCCTTGTCTCATATGAACATGTGCTGGGAATTTGATATTATTTGCTTATTTTGTAGAAAGAAGGACTAAAAGATCTGTCCACTGTCTCCTCCACTTGCCACAATGTTTCAAATGTATGTACACCATGTTCTTTATTTGTCCACCCTTCACCACAATGAGCCATCTATGTAGGGTGATTTGGAGTGGGACTGTAATAGTTCAAATGTGGATATTCTCCCATTAGTTCACTCAGTTAGTTACTTTGGTTTGCTCTGCGATTGCACCTTCTTCTACTAGGTCATAGCTTGTAACAATTCAGATGTTAAGGAAAAAGGAGAAGGCAAGACTGCTGGATCACATAAAATTGGTAAGGTCTTCTCTGTAGGTGTGATGGTTGTTGTTTTATAATTGATTTTTTTCCCAGTGGAGGGAACATTATTCTGATTTTCTAAAGAACTGCTGGATGTCATATATCACATTCAATATTTAGTGAGACTAACTTGAGGTCTGATTATGTAGACAACCGGAAGGAGAAGTCTTTGATGATTCTAGCACAAAATTTTGT</genome_strand>
        <mrna_strand>TCTCTTTCTTCAAAGCTTGAGCGGTTTATCTCGAATTTTCCGTAGGGTTCTTCTCTGATCGCTTTCAACTTTCGATAACAGAGAAACCTAGCAATGTCATCGTCACTCCATACTGAAGATTCTCAATGGAAAAACCCTAGCATTTATAGCCGCAAGGACAAATCGCTCGGTCTTCTTTGCTCCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAAATGTGTGGAGGAAGCTGATGATATGCCTTAAAAACATAAAAACCCAA............................................................................TTTCTTGAAGCTATGTGATCGGGAAGGGGTGGACTCCACCATTGGTTTGGACAATGCTGCAGATCAATTAG...................................................................................................................GTGTCGAGAGGCGTCGCATTTATGATATTGTCAATATTTTGGAAAGTGTTGGG.......................................................................GTTTTGTCAAGAAAAGCTAAGAATCAGTATAGATGGAATGGGTATAATGCAATTTCTAAGGCTGTAGATTTGCTTAAG..........................................................................AAAGAAGGACTAAAAGATCTGTCCACTGTCTCCTCCACTTGCCACAATGTTTCAAAT...................................................................................................................................................................GTCATAGCTTGTAACAATTCAGATGTTAAGGAAAAAGGAGAAGGCAAGACTGCTGGATCACATAAAATTG........................................................................................................................................................ACAACCGGAAGGAGAAGTCTTTGATGATTCTAGCACAAAATTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E238392" ref_strand="+" ref_description="SGN-E238392 [cLED-17-F5]">
      <seq>atcagtatagatggaatgggtataatgcaatttctaaggctgtagatttgcttaagaaagaaggactaaaagatctgtccactgtctcctccacttgccacaatgtttcaaatgtcatagcttgtaacaattcagatgttaaggaaaaaggagaaggcaagactgctggatcacataaaattgacaaccggaaggagaagtctttgatgattctagcacaaaattttgtaaagcttttccactgttctgatgttgacttgatatctcttgacaaggctgcatcagctttgcttggtgatgtccacgatccgatggctatgaagacaaagaccagacgcttgtatgatattgcaaatgtttttgtgtccatgaatcttattgagaagatacgcagcccagataatggaaaaccagtgtttaggtggatagcctggaaagaaaatctgaggagtgggtcccttgcatctgctaaatcagatgattcaacaaggagaacttttggggcagagatcacgaatacaactcccaaacgatacagggatgattcttcatctgatgtaatgtcaaatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="122641" stop="124452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122941" g_stop="122996" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122997" i_stop="123070" i_length="74">
            <donor d_prob="0.398" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123071" g_stop="123127" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="113" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123128" i_stop="123290" i_length="163">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123291" g_stop="123360" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="183" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123361" i_stop="123512" i_length="152">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123513" g_stop="123580" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="251" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123581" i_stop="123650" i_length="70">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="123651" g_stop="123723" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="324" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="123724" i_stop="123811" i_length="88">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="123812" g_stop="123873" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="386" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="123874" i_stop="123966" i_length="93">
            <donor d_prob="0.744" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="123967" g_stop="124152" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="572" r_length="186" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E238392" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122941" e_stop="122996"/>
          <exon e_start="123071" e_stop="123127"/>
          <exon e_start="123291" e_stop="123360"/>
          <exon e_start="123513" e_stop="123580"/>
          <exon e_start="123651" e_stop="123723"/>
          <exon e_start="123812" e_stop="123873"/>
          <exon e_start="123967" e_stop="124152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGTATAGATGGAATGGGTATAATGCAATTTCTAAGGCTGTAGATTTGCTTAAGGTAGTTGATATGCATTTTTCCTTGTCTCATATGAACATGTGCTGGGAATTTGATATTATTTGCTTATTTTGTAGAAAGAAGGACTAAAAGATCTGTCCACTGTCTCCTCCACTTGCCACAATGTTTCAAATGTATGTACACCATGTTCTTTATTTGTCCACCCTTCACCACAATGAGCCATCTATGTAGGGTGATTTGGAGTGGGACTGTAATAGTTCAAATGTGGATATTCTCCCATTAGTTCACTCAGTTAGTTACTTTGGTTTGCTCTGCGATTGCACCTTCTTCTACTAGGTCATAGCTTGTAACAATTCAGATGTTAAGGAAAAAGGAGAAGGCAAGACTGCTGGATCACATAAAATTGGTAAGGTCTTCTCTGTAGGTGTGATGGTTGTTGTTTTATAATTGATTTTTTTCCCAGTGGAGGGAACATTATTCTGATTTTCTAAAGAACTGCTGGATGTCATATATCACATTCAATATTTAGTGAGACTAACTTGAGGTCTGATTATGTAGACAACCGGAAGGAGAAGTCTTTGATGATTCTAGCACAAAATTTTGTAAAGCTTTTCCACTGTTCTGATGTAAGTGGAGCCGTACAGTTTTTCTGACTAGTTGTCAACTGTTTGCAAGCTAATGCCTTGTCTTCTGTAGGTTGACTTGATATCTCTTGACAAGGCTGCATCAGCTTTGCTTGGTGATGTCCACGATCCGATGGCTATGAAGAGTAATTCATGTTCATAATATGTTGTTATGTTTAACTTATGATTGAAAATTTGACAGAAAACTTGTTATCTTTCATAAATATGTTGCAGCAAAGACCAGACGCTTGTATGATATTGCAAATGTTTTTGTGTCCATGAATCTTATTGAGAAGGTTGGTTATATAGTTTGAATGATCAGTAACTGCGTATTCTCAAAATAATGAAATAGAGGATTATTTCTTCTGATCTTTGCAATATATATGTAGATACGCAGCCCAGATAATGGAAAACCAGTGTTTAGGTGGATAGCCTGGAAAGAAAATCTGAGGAGTGGGTCCCTTGCATCTGCTAAATCAGATGATTCAACAAGGAGAACTTTTGGGGCAGAGATCACGAATACAACTCCCAAACGATACAGGGATGATTCTTCATCTGATGTAATGTCAAATGGG</genome_strand>
        <mrna_strand>ATCAGTATAGATGGAATGGGTATAATGCAATTTCTAAGGCTGTAGATTTGCTTAAG..........................................................................AAAGAAGGACTAAAAGATCTGTCCACTGTCTCCTCCACTTGCCACAATGTTTCAAAT...................................................................................................................................................................GTCATAGCTTGTAACAATTCAGATGTTAAGGAAAAAGGAGAAGGCAAGACTGCTGGATCACATAAAATTG........................................................................................................................................................ACAACCGGAAGGAGAAGTCTTTGATGATTCTAGCACAAAATTTTGTAAAGCTTTTCCACTGTTCTGAT......................................................................GTTGACTTGATATCTCTTGACAAGGCTGCATCAGCTTTGCTTGGTGATGTCCACGATCCGATGGCTATGAAGA........................................................................................CAAAGACCAGACGCTTGTATGATATTGCAAATGTTTTTGTGTCCATGAATCTTATTGAGAAG.............................................................................................ATACGCAGCCCAGATAATGGAAAACCAGTGTTTAGGTGGATAGCCTGGAAAGAAAATCTGAGGAGTGGGTCCCTTGCATCTGCTAAATCAGATGATTCAACAAGGAGAACTTTTGGGGCAGAGATCACGAATACAACTCCCAAACGATACAGGGATGATTCTTCATCTGATGTAATGTCAAATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E235270" ref_strand="+" ref_description="SGN-E235270 [cLED-11-E19]">
      <seq>atcagtatagatggaatgggtataatgcaatttctaaggctgtagatttgcttaagaaagaaggactaaaagatctgtccactgtctcctccacttgccacaatgtttcaaatgtcatagcttgtaacaattcagatgttaaggaaaaaggagaaggcaagactgctggatcacataaaattgacaaccggaaggagaagtctttgatgattctagcacaaaattttgtaaagcttttccactgttctgatgttgacttgatatctcttgacaaggctgcatcagctttgcttggtgatgtccacgatccgatggctatgaagacaaagaccagacgcttgtatgatattgcaaatgtttttgtgtccatgaatcttattgagaagatacgcagcccagataatggaaaaccagtgtttaggtggatagcctggaaagaaaatctgaggagtgggtcccttgcatctgctaaatcagatgattcaacaaggagaacttttggggcagagatcacgaatacaactcccaaacgatacagggatgattcttcatctgatgtaatgtcaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="122641" stop="124450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122941" g_stop="122996" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122997" i_stop="123070" i_length="74">
            <donor d_prob="0.398" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123071" g_stop="123127" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="113" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123128" i_stop="123290" i_length="163">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123291" g_stop="123360" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="183" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123361" i_stop="123512" i_length="152">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123513" g_stop="123580" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="251" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123581" i_stop="123650" i_length="70">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="123651" g_stop="123723" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="324" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="123724" i_stop="123811" i_length="88">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="123812" g_stop="123873" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="386" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="123874" i_stop="123966" i_length="93">
            <donor d_prob="0.744" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="123967" g_stop="124150" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="570" r_length="184" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E235270" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122941" e_stop="122996"/>
          <exon e_start="123071" e_stop="123127"/>
          <exon e_start="123291" e_stop="123360"/>
          <exon e_start="123513" e_stop="123580"/>
          <exon e_start="123651" e_stop="123723"/>
          <exon e_start="123812" e_stop="123873"/>
          <exon e_start="123967" e_stop="124150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGTATAGATGGAATGGGTATAATGCAATTTCTAAGGCTGTAGATTTGCTTAAGGTAGTTGATATGCATTTTTCCTTGTCTCATATGAACATGTGCTGGGAATTTGATATTATTTGCTTATTTTGTAGAAAGAAGGACTAAAAGATCTGTCCACTGTCTCCTCCACTTGCCACAATGTTTCAAATGTATGTACACCATGTTCTTTATTTGTCCACCCTTCACCACAATGAGCCATCTATGTAGGGTGATTTGGAGTGGGACTGTAATAGTTCAAATGTGGATATTCTCCCATTAGTTCACTCAGTTAGTTACTTTGGTTTGCTCTGCGATTGCACCTTCTTCTACTAGGTCATAGCTTGTAACAATTCAGATGTTAAGGAAAAAGGAGAAGGCAAGACTGCTGGATCACATAAAATTGGTAAGGTCTTCTCTGTAGGTGTGATGGTTGTTGTTTTATAATTGATTTTTTTCCCAGTGGAGGGAACATTATTCTGATTTTCTAAAGAACTGCTGGATGTCATATATCACATTCAATATTTAGTGAGACTAACTTGAGGTCTGATTATGTAGACAACCGGAAGGAGAAGTCTTTGATGATTCTAGCACAAAATTTTGTAAAGCTTTTCCACTGTTCTGATGTAAGTGGAGCCGTACAGTTTTTCTGACTAGTTGTCAACTGTTTGCAAGCTAATGCCTTGTCTTCTGTAGGTTGACTTGATATCTCTTGACAAGGCTGCATCAGCTTTGCTTGGTGATGTCCACGATCCGATGGCTATGAAGAGTAATTCATGTTCATAATATGTTGTTATGTTTAACTTATGATTGAAAATTTGACAGAAAACTTGTTATCTTTCATAAATATGTTGCAGCAAAGACCAGACGCTTGTATGATATTGCAAATGTTTTTGTGTCCATGAATCTTATTGAGAAGGTTGGTTATATAGTTTGAATGATCAGTAACTGCGTATTCTCAAAATAATGAAATAGAGGATTATTTCTTCTGATCTTTGCAATATATATGTAGATACGCAGCCCAGATAATGGAAAACCAGTGTTTAGGTGGATAGCCTGGAAAGAAAATCTGAGGAGTGGGTCCCTTGCATCTGCTAAATCAGATGATTCAACAAGGAGAACTTTTGGGGCAGAGATCACGAATACAACTCCCAAACGATACAGGGATGATTCTTCATCTGATGTAATGTCAAATG</genome_strand>
        <mrna_strand>ATCAGTATAGATGGAATGGGTATAATGCAATTTCTAAGGCTGTAGATTTGCTTAAG..........................................................................AAAGAAGGACTAAAAGATCTGTCCACTGTCTCCTCCACTTGCCACAATGTTTCAAAT...................................................................................................................................................................GTCATAGCTTGTAACAATTCAGATGTTAAGGAAAAAGGAGAAGGCAAGACTGCTGGATCACATAAAATTG........................................................................................................................................................ACAACCGGAAGGAGAAGTCTTTGATGATTCTAGCACAAAATTTTGTAAAGCTTTTCCACTGTTCTGAT......................................................................GTTGACTTGATATCTCTTGACAAGGCTGCATCAGCTTTGCTTGGTGATGTCCACGATCCGATGGCTATGAAGA........................................................................................CAAAGACCAGACGCTTGTATGATATTGCAAATGTTTTTGTGTCCATGAATCTTATTGAGAAG.............................................................................................ATACGCAGCCCAGATAATGGAAAACCAGTGTTTAGGTGGATAGCCTGGAAAGAAAATCTGAGGAGTGGGTCCCTTGCATCTGCTAAATCAGATGATTCAACAAGGAGAACTTTTGGGGCAGAGATCACGAATACAACTCCCAAACGATACAGGGATGATTCTTCATCTGATGTAATGTCAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E236114" ref_strand="+" ref_description="SGN-E236114 [cLED-16-O21]">
      <seq>atcagtatagatggaatgggtataatgcaatttctaaggctgtagatttgcttaagaaagaaggactaaaagatctgtccactgtctcctccacttgccacaatgtttcaaatgtcatagcttgtaacaattcaaatgttaaggaaaaaggagaaggcaagactgctggatcacataaaattgacaaccggaaggagaagtctttgatgattctagcacaaaattttgtaaagcttttccactgatctgatgttgacttgatatctcttgacaaggctgcatcagctttgcttggtgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="122641" stop="123999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122941" g_stop="122996" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122997" i_stop="123070" i_length="74">
            <donor d_prob="0.398" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123071" g_stop="123127" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="113" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123128" i_stop="123290" i_length="163">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123291" g_stop="123360" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="183" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123361" i_stop="123512" i_length="152">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123513" g_stop="123580" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="251" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123581" i_stop="123650" i_length="70">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="123651" g_stop="123699" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="300" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E236114" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>300</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122941" e_stop="122996"/>
          <exon e_start="123071" e_stop="123127"/>
          <exon e_start="123291" e_stop="123360"/>
          <exon e_start="123513" e_stop="123580"/>
          <exon e_start="123651" e_stop="123699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGTATAGATGGAATGGGTATAATGCAATTTCTAAGGCTGTAGATTTGCTTAAGGTAGTTGATATGCATTTTTCCTTGTCTCATATGAACATGTGCTGGGAATTTGATATTATTTGCTTATTTTGTAGAAAGAAGGACTAAAAGATCTGTCCACTGTCTCCTCCACTTGCCACAATGTTTCAAATGTATGTACACCATGTTCTTTATTTGTCCACCCTTCACCACAATGAGCCATCTATGTAGGGTGATTTGGAGTGGGACTGTAATAGTTCAAATGTGGATATTCTCCCATTAGTTCACTCAGTTAGTTACTTTGGTTTGCTCTGCGATTGCACCTTCTTCTACTAGGTCATAGCTTGTAACAATTCAGATGTTAAGGAAAAAGGAGAAGGCAAGACTGCTGGATCACATAAAATTGGTAAGGTCTTCTCTGTAGGTGTGATGGTTGTTGTTTTATAATTGATTTTTTTCCCAGTGGAGGGAACATTATTCTGATTTTCTAAAGAACTGCTGGATGTCATATATCACATTCAATATTTAGTGAGACTAACTTGAGGTCTGATTATGTAGACAACCGGAAGGAGAAGTCTTTGATGATTCTAGCACAAAATTTTGTAAAGCTTTTCCACTGTTCTGATGTAAGTGGAGCCGTACAGTTTTTCTGACTAGTTGTCAACTGTTTGCAAGCTAATGCCTTGTCTTCTGTAGGTTGACTTGATATCTCTTGACAAGGCTGCATCAGCTTTGCTTGGTGATG</genome_strand>
        <mrna_strand>ATCAGTATAGATGGAATGGGTATAATGCAATTTCTAAGGCTGTAGATTTGCTTAAG..........................................................................AAAGAAGGACTAAAAGATCTGTCCACTGTCTCCTCCACTTGCCACAATGTTTCAAAT...................................................................................................................................................................GTCATAGCTTGTAACAATTCAAATGTTAAGGAAAAAGGAGAAGGCAAGACTGCTGGATCACATAAAATTG........................................................................................................................................................ACAACCGGAAGGAGAAGTCTTTGATGATTCTAGCACAAAATTTTGTAAAGCTTTTCCACTGATCTGAT......................................................................GTTGACTTGATATCTCTTGACAAGGCTGCATCAGCTTTGCTTGGTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E239519" ref_strand="+" ref_description="SGN-E239519 [cLED-23-N6]">
      <seq>atcagtatagatggaatgggtataatgcaatttctaaggctgtagatttgcttaagaaagaaggactaaaagatctgtccactgtctcctccacttgccacaatgtttcaaatgtcatagcttgtaacaattcagatgttaaggaaaaaggagaaggcaagactgctggatcacataaaattgacaaccggaaggagaagtctttgatgattctagcacaaaattttgtaaagcttttccactgttctgatgttgacttgatatctcttgacaaggctgcatcagctttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="122641" stop="123990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122941" g_stop="122996" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122997" i_stop="123070" i_length="74">
            <donor d_prob="0.398" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123071" g_stop="123127" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="113" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123128" i_stop="123290" i_length="163">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123291" g_stop="123360" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="183" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123361" i_stop="123512" i_length="152">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123513" g_stop="123580" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="251" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123581" i_stop="123650" i_length="70">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="123651" g_stop="123690" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="291" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E239519" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239519" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122941" e_stop="122996"/>
          <exon e_start="123071" e_stop="123127"/>
          <exon e_start="123291" e_stop="123360"/>
          <exon e_start="123513" e_stop="123580"/>
          <exon e_start="123651" e_stop="123690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGTATAGATGGAATGGGTATAATGCAATTTCTAAGGCTGTAGATTTGCTTAAGGTAGTTGATATGCATTTTTCCTTGTCTCATATGAACATGTGCTGGGAATTTGATATTATTTGCTTATTTTGTAGAAAGAAGGACTAAAAGATCTGTCCACTGTCTCCTCCACTTGCCACAATGTTTCAAATGTATGTACACCATGTTCTTTATTTGTCCACCCTTCACCACAATGAGCCATCTATGTAGGGTGATTTGGAGTGGGACTGTAATAGTTCAAATGTGGATATTCTCCCATTAGTTCACTCAGTTAGTTACTTTGGTTTGCTCTGCGATTGCACCTTCTTCTACTAGGTCATAGCTTGTAACAATTCAGATGTTAAGGAAAAAGGAGAAGGCAAGACTGCTGGATCACATAAAATTGGTAAGGTCTTCTCTGTAGGTGTGATGGTTGTTGTTTTATAATTGATTTTTTTCCCAGTGGAGGGAACATTATTCTGATTTTCTAAAGAACTGCTGGATGTCATATATCACATTCAATATTTAGTGAGACTAACTTGAGGTCTGATTATGTAGACAACCGGAAGGAGAAGTCTTTGATGATTCTAGCACAAAATTTTGTAAAGCTTTTCCACTGTTCTGATGTAAGTGGAGCCGTACAGTTTTTCTGACTAGTTGTCAACTGTTTGCAAGCTAATGCCTTGTCTTCTGTAGGTTGACTTGATATCTCTTGACAAGGCTGCATCAGCTTTGC</genome_strand>
        <mrna_strand>ATCAGTATAGATGGAATGGGTATAATGCAATTTCTAAGGCTGTAGATTTGCTTAAG..........................................................................AAAGAAGGACTAAAAGATCTGTCCACTGTCTCCTCCACTTGCCACAATGTTTCAAAT...................................................................................................................................................................GTCATAGCTTGTAACAATTCAGATGTTAAGGAAAAAGGAGAAGGCAAGACTGCTGGATCACATAAAATTG........................................................................................................................................................ACAACCGGAAGGAGAAGTCTTTGATGATTCTAGCACAAAATTTTGTAAAGCTTTTCCACTGTTCTGAT......................................................................GTTGACTTGATATCTCTTGACAAGGCTGCATCAGCTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E618022" ref_strand="+" ref_description="SGN-E618022 [68695]">
      <seq>ttgcaaatgagctttttgctcattatgttgaggcatgggagtcttggcaggttgaagctgccaacgagctgcacaaacaacatgaacattaatgtcatcttggatcttttttatttcagatggtagcaaacacattcaacaaggacatctctgatgctgttactctcacttgagagatggcggtaattggttgaatatctcctgcatacatatcagttgcgtgtgcggcttattatcagtttgtgatatccaagccctttagtaatatttggtgccattgtagttcccagttttatctgatgagtttcgtgcacaggtccatgggagacaatcaatctctcctacatacttaaatttttcgtatgagcttactaggtttttaaatggcaaatacctgctaccattgatgttgttatctgtgttccggttccttttcctattcaaacctcttgaagcgattccaaactgaactttaattttattgagctaaattaatcgtgttgtaaatattatgcagacatcttaaatctttgcttgtcatctcactgtgtgggaatgtaaattagaaattgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="124626" stop="125804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124925" g_stop="125501" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="575" polyA_stop="585"/>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E618022" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E618022" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124925" e_stop="125501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAAATGAGCTTTTTGCTCATTATGTTGAGGCATGGGAGTCGTGGCAGGTTGAAGCTGCCAATGAGCTGCACAAACAACATGAACATTAATGTCATCTTGGATCTTTTTTTATTTCAGATGGTAGCAAACACGTTCAACAAGGACATCTCTGATGCTGTTACTCTCACTAGAGAGATGGCGGTAATTGGTTGAATATCTCCTGCAT-CATGTCAGTTAAGTGTGCGGCATATTATCAGTTTGTGATATCCAAGCCCTTTAGTAATATTCCGTGCCATTGCAGTTCCCAGTTCTATCCGATGAGTTTCGTCCACAAGTTCATGGGAGACGATCAATCTCTCCTACATGCTTGAATTTTTTTTTTATGAGCTTACTAGGGTTTTAAAAGGCAAATATCTGCTACAATTGATGGTTGTATCTGTGTTCCGGTTCCTTCACTCCTATT-AAACCTCTTGAAGCTATCCCAAACTGAACTTCAATTTTATTGAGCTAAATTAATCGCATTGTATATATGATGCAGACATCTTACATCTTTGCTTGTCATCCCACTGTGGGGGAATGTAAATTAGAAATTGAA</genome_strand>
        <mrna_strand>TTGCAAATGAGCTTTTTGCTCATTATGTTGAGGCATGGGAGTCTTGGCAGGTTGAAGCTGCCAACGAGCTGCACAAACAACATGAACATTAATGTCATCTTGGATC-TTTTTTATTTCAGATGGTAGCAAACACATTCAACAAGGACATCTCTGATGCTGTTACTCTCACTTGAGAGATGGCGGTAATTGGTTGAATATCTCCTGCATACATATCAGTTGCGTGTGCGGCTTATTATCAGTTTGTGATATCCAAGCCCTTTAGTAATATTTGGTGCCATTGTAGTTCCCAGTTTTATCTGATGAGTTTCGTGCACAGGTCCATGGGAGACAATCAATCTCTCCTACATACTT-AA-ATTTTTCGTATGAGCTTACTAGGTTTTTAAATGGCAAATACCTGCTACCATTGATGTTGTTATCTGTGTTCCGGTTCCTT--TTCCTATTCAAACCTCTTGAAGCGATTCCAAACTGAACTTTAATTTTATTGAGCTAAATTAATCGTGTTGTAAATATTATGCAGACATCTTAAATCTTTGCTTGTCATCTCACTGTGTGGGAATGTAAATTAGAAATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E539452" ref_strand="+" ref_description="SGN-E539452 [TUS-59-D12]">
      <seq>caaaaagatcgtaaagtttgcatgttctttcccccgtttttctatggcttcttccaccattaatcgatggctgaggcctgaggtgtatccactttttgcagccgtaggcgttgctgtagggatctgtggaatgcaattggttcgtaatatctgcaccaaccctgaagtcagggtgacaaaggaaaacagggcagcaggagtgctggataatttttcagaaggggagaaatattcagagcatgctctaaggaagtttgttcgaaacaagtctccggagattatgccatcaatcaacggcttcttcagtaatccaaactaatgtcctagtcaagtttaatttggattaacaccattattctttgtcttcttttccattgaatgagatagacatgaaatgcatttttctggccctaaaagatatttgaaagaaacttgaataaatgtaatcagaaccacaagttcccctctcttttgacagggcacatcttttcatatgatattgaactgttgttttccggataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="135649" stop="133202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135349" g_stop="135268" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="135267" i_stop="135080" i_length="188">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="135079" g_stop="134991" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="171" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134990" i_stop="133852" i_length="1139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="133851" g_stop="133493" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="530" r_length="359" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E539452" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135349" e_stop="135268"/>
          <exon e_start="135079" e_stop="134991"/>
          <exon e_start="133851" e_stop="133493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAGATCGTAAAGTTTGCATGTTCTTTCCCCCGTTTTTCTATGGCTTCTTCCACCATTAATCGATGGCTGAGGCCTGAGGTATGTTTTATTCTTCCGCCATAGATCTCCTCCCTTCTATTTCCTTATTATAAAGATTTTTTAAAAACTTCCTATGATATCGGCGATTTTTAATGGATTATTGGGGGCTTTTCTTGTTTAAGGGTTGAATGTTGGTTTAGCGATTAGATCTGAGTGATTATATATCTTCTATATTTGTGGTGGCGCAGGTGTATCCACTTTTTGCAGCCGTAGGCGTTGCTGTAGGGATCTGTGGAATGCAATTGGTTCGTAATATCTGCACCAACCCTGAAGTCAGGTAACCTCTTCATATCCGTTTATGCCTTGTCTAATTTGTGTTAATTTGATTTAGCCAGCTTTAATTGGATACTTTGTCGAATTAAAGATTGTCACGTCAATTCGAGAACTAGATCGGGCATGTATGTAGAGAATTCATGTGATAGCTTAGAATTTTAGGCTTAGTTGATCGATTGATTTAACAATCCAAGGTAACTAACTCCATTGGTAGGCTGCCCAATCCACCACCCTGTAATCTGTATATTATAGGTCGAGCCATTTTCCCTTTTCATATAAACATACATATTTTTTAAAAAAGAAAACGAGTGATTGATCTACCCTTATTTATCTTCCTAAAAACTGCATGCCTCCTTTATGTTTATTGTTTGTTTAGATGCTGATGAAAGGATATATGTATATGTTTGGGTTAGAGATGGATTCAACATTTGAATGGATTCAATTTTTAAGATTTCCTGTATTGACTTGCTTGTTTCGAATTCTATTATTATGGTACTTATTTAGTGAATTTAAAACCCACATACTTCGAGCCAACTAAAGCTACTGGATTTGACTGGACCAATTAGTAATACATAGATCCACCACTGATTGTGATCTACATGAGGATTCTTTGACAATCAATTATTCGATAAAGAAGGAAAGCCTCTAAGAGTTTAACTGGTATGACTTTAAAGCAACATATGAGGTTACAATTGCGAGAAACGGAAGAGGGAAAACCTGGTAAAATTTCTCTAATTTTGGATCAATTTTGTTTGATTCTTTGTTGGTGGTACAAATCAAGTCAGTTGATCAACTGGTATAACATCTGCTAGGCAATGAAACCGCCCATATTTAAGTTGTGTTGTACTAGATTGCATCTTTTTTAGCTGTGGCAGCGTTTGGAATATTATGAAGGAGATTATTGAAAAGTGTAAAAGCCACACCCGAGATTTAGAACACGTGACCGAATGCAATTTTTGAGCGACATTTGCTACTACACTAGATACGATTCCAAATTTATTTATTTGACATAAGTTTTACCCTATTTGCACGATATTATCTTTTGATAGGTGATTCAGTTGACCCCTACTGAACTCTCCACATGCAAGTTGCATCCACCCCCACACCCTACTGACCGTGTCTTGATGTTTGCAAAATTCTCAGGGTGACAAAGGAAAACAGGGCAGCAGGAGTGCTGGATAATTTTTCAGAAGGGGAGAAATATTCAGAGCATGCTCTAAGGAAGTTTGTTCGAAACAAGTCTCCGGAGATTATGCCATCAATCAACGGCTTCTTCAGTAATCCAAACTAATGTCCTAGTCAAGTTTAATTTGGATTAACACCATTATTCTTTGTCTTCTTTTCCATTGAATGAGATAGACATGAAATGCATTTTTCTGGCCCTAAAAGATATTTGAAAGAAACTTGAATAAATGTAATCAGAACCACAAGTTCCCCTCTCTTTTGACAGGGCACATCTTTTCATATGATATTGAACTGTTGTTTTCCGGATACGTGAAGGT</genome_strand>
        <mrna_strand>CAAAAAGATCGTAAAGTTTGCATGTTCTTTCCCCCGTTTTTCTATGGCTTCTTCCACCATTAATCGATGGCTGAGGCCTGAG............................................................................................................................................................................................GTGTATCCACTTTTTGCAGCCGTAGGCGTTGCTGTAGGGATCTGTGGAATGCAATTGGTTCGTAATATCTGCACCAACCCTGAAGTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGACAAAGGAAAACAGGGCAGCAGGAGTGCTGGATAATTTTTCAGAAGGGGAGAAATATTCAGAGCATGCTCTAAGGAAGTTTGTTCGAAACAAGTCTCCGGAGATTATGCCATCAATCAACGGCTTCTTCAGTAATCCAAACTAATGTCCTAGTCAAGTTTAATTTGGATTAACACCATTATTCTTTGTCTTCTTTTCCATTGAATGAGATAGACATGAAATGCATTTTTCTGGCCCTAAAAGATATTTGAAAGAAACTTGAATAAATGTAATCAGAACCACAAGTTCCCCTCTCTTTTGACAGGGCACATCTTTTCATATGATATTGAACTGTTGTTTTCCGGATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E410821" ref_strand="+" ref_description="SGN-E410821 [PPI-18-M17]">
      <seq>caacagtctcaaaaagatcgtaaagtttgcgtgttctttcccccgtttttctatggcttcttccaccattaatcgatggctgaggcccgaggtgtatccactttttgcagccgtaggcgttgctgtagggatctgtggaatgcaattggttcgtaatatatgcaccaaccctgaagtcagggtgacgaaggaaaacagggcagcaggagtgctggataatttttcagaaggggagaaatattcagagcatgctctaaggaagtttgttcgaaacaagtctccggagattatgccatcaatcaacggcttcttcagcaatccaaactaatgccctagtcaagtttaatatggattataacatcattattctttgtcctcttcttttccattgaatgagatagacatgaaatgcatttttctggcctgcgatgggcctaaagatattgaaagaaaacttgaataaatgtaatcagaaccacaagttcctcccttttgacagggcacatcttttcatatactattgaactgttgttttccggaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="135658" stop="133202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135358" g_stop="135268" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="135267" i_stop="135080" i_length="188">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="135079" g_stop="134991" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="180" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134990" i_stop="133852" i_length="1139">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="133851" g_stop="133494" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="550" r_length="370" r_score="0.863"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E410821" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E410821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135358" e_stop="135268"/>
          <exon e_start="135079" e_stop="134991"/>
          <exon e_start="133851" e_stop="133494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAGTCTCAAAAAGATCGTAAAGTTTGCATGTTCTTTCCCCCGTTTTTCTATGGCTTCTTCCACCATTAATCGATGGCTGAGGCCTGAGGTATGTTTTATTCTTCCGCCATAGATCTCCTCCCTTCTATTTCCTTATTATAAAGATTTTTTAAAAACTTCCTATGATATCGGCGATTTTTAATGGATTATTGGGGGCTTTTCTTGTTTAAGGGTTGAATGTTGGTTTAGCGATTAGATCTGAGTGATTATATATCTTCTATATTTGTGGTGGCGCAGGTGTATCCACTTTTTGCAGCCGTAGGCGTTGCTGTAGGGATCTGTGGAATGCAATTGGTTCGTAATATCTGCACCAACCCTGAAGTCAGGTAACCTCTTCATATCCGTTTATGCCTTGTCTAATTTGTGTTAATTTGATTTAGCCAGCTTTAATTGGATACTTTGTCGAATTAAAGATTGTCACGTCAATTCGAGAACTAGATCGGGCATGTATGTAGAGAATTCATGTGATAGCTTAGAATTTTAGGCTTAGTTGATCGATTGATTTAACAATCCAAGGTAACTAACTCCATTGGTAGGCTGCCCAATCCACCACCCTGTAATCTGTATATTATAGGTCGAGCCATTTTCCCTTTTCATATAAACATACATATTTTTTAAAAAAGAAAACGAGTGATTGATCTACCCTTATTTATCTTCCTAAAAACTGCATGCCTCCTTTATGTTTATTGTTTGTTTAGATGCTGATGAAAGGATATATGTATATGTTTGGGTTAGAGATGGATTCAACATTTGAATGGATTCAATTTTTAAGATTTCCTGTATTGACTTGCTTGTTTCGAATTCTATTATTATGGTACTTATTTAGTGAATTTAAAACCCACATACTTCGAGCCAACTAAAGCTACTGGATTTGACTGGACCAATTAGTAATACATAGATCCACCACTGATTGTGATCTACATGAGGATTCTTTGACAATCAATTATTCGATAAAGAAGGAAAGCCTCTAAGAGTTTAACTGGTATGACTTTAAAGCAACATATGAGGTTACAATTGCGAGAAACGGAAGAGGGAAAACCTGGTAAAATTTCTCTAATTTTGGATCAATTTTGTTTGATTCTTTGTTGGTGGTACAAATCAAGTCAGTTGATCAACTGGTATAACATCTGCTAGGCAATGAAACCGCCCATATTTAAGTTGTGTTGTACTAGATTGCATCTTTTTTAGCTGTGGCAGCGTTTGGAATATTATGAAGGAGATTATTGAAAAGTGTAAAAGCCACACCCGAGATTTAGAACACGTGACCGAATGCAATTTTTGAGCGACATTTGCTACTACACTAGATACGATTCCAAATTTATTTATTTGACATAAGTTTTACCCTATTTGCACGATATTATCTTTTGATAGGTGATTCAGTTGACCCCTACTGAACTCTCCACATGCAAGTTGCATCCACCCCCACACCCTACTGACCGTGTCTTGATGTTTGCAAAATTCTCAGGGTGACAAAGGAAAACAGGGCAGCAGGAGTGCTGGATAATTTTTCAGAAGGGGAGAAATATTCAGAGCATGCTCTAAGGAAGTTTGTTCGAAACAAGTCTCCGGAGATTATGCCATCAATCAACGGCTTCTTCAGTAATCCAAACTAATGTCCTAGTCAAGTTTAATTTGGA-T-TAACACCATTATTCTTTG---TCTTCTTTTCCATTGAATGAGATAGACATGAAATGCATTTTTCTGGCC--C--T-----AAAAGATATTTGAAAG-AAACTTGAATAAATGTAATCAGAACCACAAGTTCCCCTCTCTTTTGACAGGGCACATCTTTTCATATGATATTGAACTGTTGTTTTCCGGATACGTGAAGG</genome_strand>
        <mrna_strand>CAACAGTCTCAAAAAGATCGTAAAGTTTGCGTGTTCTTTCCCCCGTTTTTCTATGGCTTCTTCCACCATTAATCGATGGCTGAGGCCCGAG............................................................................................................................................................................................GTGTATCCACTTTTTGCAGCCGTAGGCGTTGCTGTAGGGATCTGTGGAATGCAATTGGTTCGTAATATATGCACCAACCCTGAAGTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGACGAAGGAAAACAGGGCAGCAGGAGTGCTGGATAATTTTTCAGAAGGGGAGAAATATTCAGAGCATGCTCTAAGGAAGTTTGTTCGAAACAAGTCTCCGGAGATTATGCCATCAATCAACGGCTTCTTCAGCAATCCAAACTAATGCCCTAGTCAAGTTTAATATGGATTATAACATCATTATTCTTTGTCCTCTTCTTTTCCATTGAATGAGATAGACATGAAATGCATTTTTCTGGCCTGCGATGGGCCTAAAGATA-TTGAAAGAAAACTTGAATAAATGTAATCAGAACCACAAGTT--CCTCCCTTTTGACAGGGCACATCTTTTCATATACTATTGAACTGTTGTTTTCCGGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E465687" ref_strand="+" ref_description="SGN-E465687 [cPRO-21-N20]">
      <seq>caacagtctcaaaaagatcgtaaagtttgcgtgttctttcccccgtttttctatggcttcttccaccattaatcgatggctgaggcccgaggtgtatccactttttgctgccgtaggcgttgcggtagggatctgtggaatgcaattggttcgtaatatctgcaccaaccctgaagtcagggtgacaaaggaaaacagggcagcaggagtgctggataatttttcagaaggggagaaatattcagagcatgctctaaggaagtttgttcgaaacaagtctccggagattatgccatcaatcaacggtttcttcagcgatccaaactaatgccctagtcaagtttaatatggattataacatcattattctttgtcctcttcttttccattgaatgagatagacatgaaatgcatttttctggcctgcgatgggcctaaaagatattgaaagaaacttgaataaatgtaatcagaaccacaagttcctcccttttgacagggcacatcttttcatatactattgaactgttgttttccggannaangaagaagaagaacgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="135658" stop="133204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135358" g_stop="135268" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="135267" i_stop="135080" i_length="188">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="135079" g_stop="134991" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="180" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134990" i_stop="133852" i_length="1139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="133851" g_stop="133495" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="549" r_length="369" r_score="0.868"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E465687" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E465687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135358" e_stop="135268"/>
          <exon e_start="135079" e_stop="134991"/>
          <exon e_start="133851" e_stop="133495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAGTCTCAAAAAGATCGTAAAGTTTGCATGTTCTTTCCCCCGTTTTTCTATGGCTTCTTCCACCATTAATCGATGGCTGAGGCCTGAGGTATGTTTTATTCTTCCGCCATAGATCTCCTCCCTTCTATTTCCTTATTATAAAGATTTTTTAAAAACTTCCTATGATATCGGCGATTTTTAATGGATTATTGGGGGCTTTTCTTGTTTAAGGGTTGAATGTTGGTTTAGCGATTAGATCTGAGTGATTATATATCTTCTATATTTGTGGTGGCGCAGGTGTATCCACTTTTTGCAGCCGTAGGCGTTGCTGTAGGGATCTGTGGAATGCAATTGGTTCGTAATATCTGCACCAACCCTGAAGTCAGGTAACCTCTTCATATCCGTTTATGCCTTGTCTAATTTGTGTTAATTTGATTTAGCCAGCTTTAATTGGATACTTTGTCGAATTAAAGATTGTCACGTCAATTCGAGAACTAGATCGGGCATGTATGTAGAGAATTCATGTGATAGCTTAGAATTTTAGGCTTAGTTGATCGATTGATTTAACAATCCAAGGTAACTAACTCCATTGGTAGGCTGCCCAATCCACCACCCTGTAATCTGTATATTATAGGTCGAGCCATTTTCCCTTTTCATATAAACATACATATTTTTTAAAAAAGAAAACGAGTGATTGATCTACCCTTATTTATCTTCCTAAAAACTGCATGCCTCCTTTATGTTTATTGTTTGTTTAGATGCTGATGAAAGGATATATGTATATGTTTGGGTTAGAGATGGATTCAACATTTGAATGGATTCAATTTTTAAGATTTCCTGTATTGACTTGCTTGTTTCGAATTCTATTATTATGGTACTTATTTAGTGAATTTAAAACCCACATACTTCGAGCCAACTAAAGCTACTGGATTTGACTGGACCAATTAGTAATACATAGATCCACCACTGATTGTGATCTACATGAGGATTCTTTGACAATCAATTATTCGATAAAGAAGGAAAGCCTCTAAGAGTTTAACTGGTATGACTTTAAAGCAACATATGAGGTTACAATTGCGAGAAACGGAAGAGGGAAAACCTGGTAAAATTTCTCTAATTTTGGATCAATTTTGTTTGATTCTTTGTTGGTGGTACAAATCAAGTCAGTTGATCAACTGGTATAACATCTGCTAGGCAATGAAACCGCCCATATTTAAGTTGTGTTGTACTAGATTGCATCTTTTTTAGCTGTGGCAGCGTTTGGAATATTATGAAGGAGATTATTGAAAAGTGTAAAAGCCACACCCGAGATTTAGAACACGTGACCGAATGCAATTTTTGAGCGACATTTGCTACTACACTAGATACGATTCCAAATTTATTTATTTGACATAAGTTTTACCCTATTTGCACGATATTATCTTTTGATAGGTGATTCAGTTGACCCCTACTGAACTCTCCACATGCAAGTTGCATCCACCCCCACACCCTACTGACCGTGTCTTGATGTTTGCAAAATTCTCAGGGTGACAAAGGAAAACAGGGCAGCAGGAGTGCTGGATAATTTTTCAGAAGGGGAGAAATATTCAGAGCATGCTCTAAGGAAGTTTGTTCGAAACAAGTCTCCGGAGATTATGCCATCAATCAACGGCTTCTTCAGTAATCCAAACTAATGTCCTAGTCAAGTTTAATTTGGA-T-TAACACCATTATTCTTTG---TCTTCTTTTCCATTGAATGAGATAGACATGAAATGCATTTTTCT-G---GC------CCTAAAAGATATTTGAAAGAAACTTGAATAAATGTAATCAGAACCACAAGTTCCCCTCTCTTTTGACAGGGCACATCTTTTCATATGATATTGAACTGTTGTTTTCCGGATACGTGAAG</genome_strand>
        <mrna_strand>CAACAGTCTCAAAAAGATCGTAAAGTTTGCGTGTTCTTTCCCCCGTTTTTCTATGGCTTCTTCCACCATTAATCGATGGCTGAGGCCCGAG............................................................................................................................................................................................GTGTATCCACTTTTTGCTGCCGTAGGCGTTGCGGTAGGGATCTGTGGAATGCAATTGGTTCGTAATATCTGCACCAACCCTGAAGTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGACAAAGGAAAACAGGGCAGCAGGAGTGCTGGATAATTTTTCAGAAGGGGAGAAATATTCAGAGCATGCTCTAAGGAAGTTTGTTCGAAACAAGTCTCCGGAGATTATGCCATCAATCAACGGTTTCTTCAGCGATCCAAACTAATGCCCTAGTCAAGTTTAATATGGATTATAACATCATTATTCTTTGTCCTCTTCTTTTCCATTGAATGAGATAGACATGAAATGCATTTTTCTGGCCTGCGATGGGCCTAAAAGATA-TTGAAAGAAACTTGAATAAATGTAATCAGAACCACAAGTT--CCTCCCTTTTGACAGGGCACATCTTTTCATATACTATTGAACTGTTGTTTTCCGGANNAANGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E421323" ref_strand="-" ref_description="SGN-E421323 [STM-32-N15]">
      <seq>cagtctcaaaaagatcgtaaagtttgcgtgttctttcccccgtttttctatggcttcttccaccattaatcgatggctgaggcccgaggtgtatccactttttgctgccgtaggcgttgcggtagggatctgtggaatgcaattggttcgtaatatctgcaccaaccctgaagtcagggtgacaaaggaaaacagggcagcaggagtgctggataatttttcagaaggggagaaatattcagagcatgctctaaggaagtttgttcgaaacaagtctccggagattatgccatcaatcaacggtttcttcagcgatccaaactaatgccctagtcaagtttaatatggattataacatcattattctttgtcctcttcttttccattgaatgagatagacatgaaatgcatttttctggcctgcgatgggcctaaaagatattgaaagaaacttgaataaatgtaatcagaaccacaagttcctcccttttgacagggcacatcttttcatataatattgaactgttttttccggaaaagagtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="135655" stop="133198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135355" g_stop="135268" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="135267" i_stop="135080" i_length="188">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="135079" g_stop="134991" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="177" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134990" i_stop="133852" i_length="1139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="133851" g_stop="133495" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="545" r_length="368" r_score="0.866"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E421323" ref_strand="-">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E421323" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="135355" e_stop="135268"/>
          <exon e_start="135079" e_stop="134991"/>
          <exon e_start="133851" e_stop="133495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTCTCAAAAAGATCGTAAAGTTTGCATGTTCTTTCCCCCGTTTTTCTATGGCTTCTTCCACCATTAATCGATGGCTGAGGCCTGAGGTATGTTTTATTCTTCCGCCATAGATCTCCTCCCTTCTATTTCCTTATTATAAAGATTTTTTAAAAACTTCCTATGATATCGGCGATTTTTAATGGATTATTGGGGGCTTTTCTTGTTTAAGGGTTGAATGTTGGTTTAGCGATTAGATCTGAGTGATTATATATCTTCTATATTTGTGGTGGCGCAGGTGTATCCACTTTTTGCAGCCGTAGGCGTTGCTGTAGGGATCTGTGGAATGCAATTGGTTCGTAATATCTGCACCAACCCTGAAGTCAGGTAACCTCTTCATATCCGTTTATGCCTTGTCTAATTTGTGTTAATTTGATTTAGCCAGCTTTAATTGGATACTTTGTCGAATTAAAGATTGTCACGTCAATTCGAGAACTAGATCGGGCATGTATGTAGAGAATTCATGTGATAGCTTAGAATTTTAGGCTTAGTTGATCGATTGATTTAACAATCCAAGGTAACTAACTCCATTGGTAGGCTGCCCAATCCACCACCCTGTAATCTGTATATTATAGGTCGAGCCATTTTCCCTTTTCATATAAACATACATATTTTTTAAAAAAGAAAACGAGTGATTGATCTACCCTTATTTATCTTCCTAAAAACTGCATGCCTCCTTTATGTTTATTGTTTGTTTAGATGCTGATGAAAGGATATATGTATATGTTTGGGTTAGAGATGGATTCAACATTTGAATGGATTCAATTTTTAAGATTTCCTGTATTGACTTGCTTGTTTCGAATTCTATTATTATGGTACTTATTTAGTGAATTTAAAACCCACATACTTCGAGCCAACTAAAGCTACTGGATTTGACTGGACCAATTAGTAATACATAGATCCACCACTGATTGTGATCTACATGAGGATTCTTTGACAATCAATTATTCGATAAAGAAGGAAAGCCTCTAAGAGTTTAACTGGTATGACTTTAAAGCAACATATGAGGTTACAATTGCGAGAAACGGAAGAGGGAAAACCTGGTAAAATTTCTCTAATTTTGGATCAATTTTGTTTGATTCTTTGTTGGTGGTACAAATCAAGTCAGTTGATCAACTGGTATAACATCTGCTAGGCAATGAAACCGCCCATATTTAAGTTGTGTTGTACTAGATTGCATCTTTTTTAGCTGTGGCAGCGTTTGGAATATTATGAAGGAGATTATTGAAAAGTGTAAAAGCCACACCCGAGATTTAGAACACGTGACCGAATGCAATTTTTGAGCGACATTTGCTACTACACTAGATACGATTCCAAATTTATTTATTTGACATAAGTTTTACCCTATTTGCACGATATTATCTTTTGATAGGTGATTCAGTTGACCCCTACTGAACTCTCCACATGCAAGTTGCATCCACCCCCACACCCTACTGACCGTGTCTTGATGTTTGCAAAATTCTCAGGGTGACAAAGGAAAACAGGGCAGCAGGAGTGCTGGATAATTTTTCAGAAGGGGAGAAATATTCAGAGCATGCTCTAAGGAAGTTTGTTCGAAACAAGTCTCCGGAGATTATGCCATCAATCAACGGCTTCTTCAGTAATCCAAACTAATGTCCTAGTCAAGTTTAATTTGGA-T-TAACACCATTATTCTTTG---TCTTCTTTTCCATTGAATGAGATAGACATGAAATGCATTTTTCT-G---GC------CCTAAAAGATATTTGAAAGAAACTTGAATAAATGTAATCAGAACCACAAGTTCCCCTCTCTTTTGACAGGGCACATCTTTTCATATGATATTGAACTGTTGTTTTCCGGATACGTGAAG</genome_strand>
        <mrna_strand>CAGTCTCAAAAAGATCGTAAAGTTTGCGTGTTCTTTCCCCCGTTTTTCTATGGCTTCTTCCACCATTAATCGATGGCTGAGGCCCGAG............................................................................................................................................................................................GTGTATCCACTTTTTGCTGCCGTAGGCGTTGCGGTAGGGATCTGTGGAATGCAATTGGTTCGTAATATCTGCACCAACCCTGAAGTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGACAAAGGAAAACAGGGCAGCAGGAGTGCTGGATAATTTTTCAGAAGGGGAGAAATATTCAGAGCATGCTCTAAGGAAGTTTGTTCGAAACAAGTCTCCGGAGATTATGCCATCAATCAACGGTTTCTTCAGCGATCCAAACTAATGCCCTAGTCAAGTTTAATATGGATTATAACATCATTATTCTTTGTCCTCTTCTTTTCCATTGAATGAGATAGACATGAAATGCATTTTTCTGGCCTGCGATGGGCCTAAAAGATA-TTGAAAGAAACTTGAATAAATGTAATCAGAACCACAAGTT--CCTCCCTTTTGACAGGGCACATCTTTTCATATAATATTGAACTGTT-TTTTCCGGAAAAGAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E407711" ref_strand="+" ref_description="SGN-E407711 [PPI-8-E8]">
      <seq>cagtctcaaaaagatcgtaaagtttgcgtgttctttcccccgtttttctatggcttcttccaccattaatcgatggctgaggcccgaggtgtatccactttttgctgccgtaggcgttgcggtagggatctgtggaatgcaattggttcgtaatatctgcaccaaccctgaagtcagggtgacaaaggaaaacagggcagcaggagtgctggataatttttcagaaggggagaaatattcagagcatgctctaaggaagtttgttcgaaacaagtctccggagattatgccatcaatcaacggtttcttcagcgatccaaactaatgccctagtcaagtttaatatggattataacatcattattctttgtcctcttcttttccattgaatgagatagacatgaaatgcatttttctggcctgcgatgggcctaaaagatattgaaagaaacttgaataaatgtaatcagaaccacaagttcctcccttttgacagggcacatcttttcatatactattgaactgttgttttccggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="135655" stop="133202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135355" g_stop="135268" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="135267" i_stop="135080" i_length="188">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="135079" g_stop="134991" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="177" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134990" i_stop="133852" i_length="1139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="133851" g_stop="133495" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="546" r_length="369" r_score="0.866"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E407711" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E407711" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135355" e_stop="135268"/>
          <exon e_start="135079" e_stop="134991"/>
          <exon e_start="133851" e_stop="133495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTCTCAAAAAGATCGTAAAGTTTGCATGTTCTTTCCCCCGTTTTTCTATGGCTTCTTCCACCATTAATCGATGGCTGAGGCCTGAGGTATGTTTTATTCTTCCGCCATAGATCTCCTCCCTTCTATTTCCTTATTATAAAGATTTTTTAAAAACTTCCTATGATATCGGCGATTTTTAATGGATTATTGGGGGCTTTTCTTGTTTAAGGGTTGAATGTTGGTTTAGCGATTAGATCTGAGTGATTATATATCTTCTATATTTGTGGTGGCGCAGGTGTATCCACTTTTTGCAGCCGTAGGCGTTGCTGTAGGGATCTGTGGAATGCAATTGGTTCGTAATATCTGCACCAACCCTGAAGTCAGGTAACCTCTTCATATCCGTTTATGCCTTGTCTAATTTGTGTTAATTTGATTTAGCCAGCTTTAATTGGATACTTTGTCGAATTAAAGATTGTCACGTCAATTCGAGAACTAGATCGGGCATGTATGTAGAGAATTCATGTGATAGCTTAGAATTTTAGGCTTAGTTGATCGATTGATTTAACAATCCAAGGTAACTAACTCCATTGGTAGGCTGCCCAATCCACCACCCTGTAATCTGTATATTATAGGTCGAGCCATTTTCCCTTTTCATATAAACATACATATTTTTTAAAAAAGAAAACGAGTGATTGATCTACCCTTATTTATCTTCCTAAAAACTGCATGCCTCCTTTATGTTTATTGTTTGTTTAGATGCTGATGAAAGGATATATGTATATGTTTGGGTTAGAGATGGATTCAACATTTGAATGGATTCAATTTTTAAGATTTCCTGTATTGACTTGCTTGTTTCGAATTCTATTATTATGGTACTTATTTAGTGAATTTAAAACCCACATACTTCGAGCCAACTAAAGCTACTGGATTTGACTGGACCAATTAGTAATACATAGATCCACCACTGATTGTGATCTACATGAGGATTCTTTGACAATCAATTATTCGATAAAGAAGGAAAGCCTCTAAGAGTTTAACTGGTATGACTTTAAAGCAACATATGAGGTTACAATTGCGAGAAACGGAAGAGGGAAAACCTGGTAAAATTTCTCTAATTTTGGATCAATTTTGTTTGATTCTTTGTTGGTGGTACAAATCAAGTCAGTTGATCAACTGGTATAACATCTGCTAGGCAATGAAACCGCCCATATTTAAGTTGTGTTGTACTAGATTGCATCTTTTTTAGCTGTGGCAGCGTTTGGAATATTATGAAGGAGATTATTGAAAAGTGTAAAAGCCACACCCGAGATTTAGAACACGTGACCGAATGCAATTTTTGAGCGACATTTGCTACTACACTAGATACGATTCCAAATTTATTTATTTGACATAAGTTTTACCCTATTTGCACGATATTATCTTTTGATAGGTGATTCAGTTGACCCCTACTGAACTCTCCACATGCAAGTTGCATCCACCCCCACACCCTACTGACCGTGTCTTGATGTTTGCAAAATTCTCAGGGTGACAAAGGAAAACAGGGCAGCAGGAGTGCTGGATAATTTTTCAGAAGGGGAGAAATATTCAGAGCATGCTCTAAGGAAGTTTGTTCGAAACAAGTCTCCGGAGATTATGCCATCAATCAACGGCTTCTTCAGTAATCCAAACTAATGTCCTAGTCAAGTTTAATTTGGA-T-TAACACCATTATTCTTTG---TCTTCTTTTCCATTGAATGAGATAGACATGAAATGCATTTTTCT-G---GC------CCTAAAAGATATTTGAAAGAAACTTGAATAAATGTAATCAGAACCACAAGTTCCCCTCTCTTTTGACAGGGCACATCTTTTCATATGATATTGAACTGTTGTTTTCCGGATACGTGAAG</genome_strand>
        <mrna_strand>CAGTCTCAAAAAGATCGTAAAGTTTGCGTGTTCTTTCCCCCGTTTTTCTATGGCTTCTTCCACCATTAATCGATGGCTGAGGCCCGAG............................................................................................................................................................................................GTGTATCCACTTTTTGCTGCCGTAGGCGTTGCGGTAGGGATCTGTGGAATGCAATTGGTTCGTAATATCTGCACCAACCCTGAAGTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGACAAAGGAAAACAGGGCAGCAGGAGTGCTGGATAATTTTTCAGAAGGGGAGAAATATTCAGAGCATGCTCTAAGGAAGTTTGTTCGAAACAAGTCTCCGGAGATTATGCCATCAATCAACGGTTTCTTCAGCGATCCAAACTAATGCCCTAGTCAAGTTTAATATGGATTATAACATCATTATTCTTTGTCCTCTTCTTTTCCATTGAATGAGATAGACATGAAATGCATTTTTCTGGCCTGCGATGGGCCTAAAAGATA-TTGAAAGAAACTTGAATAAATGTAATCAGAACCACAAGTT--CCTCCCTTTTGACAGGGCACATCTTTTCATATACTATTGAACTGTTGTTTTCCGGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E422054" ref_strand="+" ref_description="SGN-E422054 [STM-34-C7]">
      <seq>cagtctcaaaaagatcgtaaagtttgcgtgttctttcccccgtttttctatggcttcttccaccattaatcgatggctgaggcccgaggtgtatccactttttgctgccgtaggcgttgcggtagggatctgtggaatgcaattggttcgtaatatctgcaccaaccctgaagtcagggtgacaaaggaaaacagggcagcaggagtgctggataatttttcagaaggggagaaatattcagagcatgctctaaggaagtttgttcgaaacaagtctccggagattatgccatcaatcaacggtttcttcagcgatccaaactaatgccctagtcaagtttaatatggattataacatcattattctttgtcctcttcttttccattgaatgagatagacatgaaatgcatttttctggcctgcgatgggcctaaaagatattgaaagaaacttgaataaatgtaatcagaaccacaagttcctcccttttgacagggcacatcttttcatatactattgaactgttgttttccggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="135655" stop="133202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135355" g_stop="135268" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="135267" i_stop="135080" i_length="188">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="135079" g_stop="134991" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="177" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134990" i_stop="133852" i_length="1139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="133851" g_stop="133495" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="546" r_length="369" r_score="0.866"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E422054" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E422054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135355" e_stop="135268"/>
          <exon e_start="135079" e_stop="134991"/>
          <exon e_start="133851" e_stop="133495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTCTCAAAAAGATCGTAAAGTTTGCATGTTCTTTCCCCCGTTTTTCTATGGCTTCTTCCACCATTAATCGATGGCTGAGGCCTGAGGTATGTTTTATTCTTCCGCCATAGATCTCCTCCCTTCTATTTCCTTATTATAAAGATTTTTTAAAAACTTCCTATGATATCGGCGATTTTTAATGGATTATTGGGGGCTTTTCTTGTTTAAGGGTTGAATGTTGGTTTAGCGATTAGATCTGAGTGATTATATATCTTCTATATTTGTGGTGGCGCAGGTGTATCCACTTTTTGCAGCCGTAGGCGTTGCTGTAGGGATCTGTGGAATGCAATTGGTTCGTAATATCTGCACCAACCCTGAAGTCAGGTAACCTCTTCATATCCGTTTATGCCTTGTCTAATTTGTGTTAATTTGATTTAGCCAGCTTTAATTGGATACTTTGTCGAATTAAAGATTGTCACGTCAATTCGAGAACTAGATCGGGCATGTATGTAGAGAATTCATGTGATAGCTTAGAATTTTAGGCTTAGTTGATCGATTGATTTAACAATCCAAGGTAACTAACTCCATTGGTAGGCTGCCCAATCCACCACCCTGTAATCTGTATATTATAGGTCGAGCCATTTTCCCTTTTCATATAAACATACATATTTTTTAAAAAAGAAAACGAGTGATTGATCTACCCTTATTTATCTTCCTAAAAACTGCATGCCTCCTTTATGTTTATTGTTTGTTTAGATGCTGATGAAAGGATATATGTATATGTTTGGGTTAGAGATGGATTCAACATTTGAATGGATTCAATTTTTAAGATTTCCTGTATTGACTTGCTTGTTTCGAATTCTATTATTATGGTACTTATTTAGTGAATTTAAAACCCACATACTTCGAGCCAACTAAAGCTACTGGATTTGACTGGACCAATTAGTAATACATAGATCCACCACTGATTGTGATCTACATGAGGATTCTTTGACAATCAATTATTCGATAAAGAAGGAAAGCCTCTAAGAGTTTAACTGGTATGACTTTAAAGCAACATATGAGGTTACAATTGCGAGAAACGGAAGAGGGAAAACCTGGTAAAATTTCTCTAATTTTGGATCAATTTTGTTTGATTCTTTGTTGGTGGTACAAATCAAGTCAGTTGATCAACTGGTATAACATCTGCTAGGCAATGAAACCGCCCATATTTAAGTTGTGTTGTACTAGATTGCATCTTTTTTAGCTGTGGCAGCGTTTGGAATATTATGAAGGAGATTATTGAAAAGTGTAAAAGCCACACCCGAGATTTAGAACACGTGACCGAATGCAATTTTTGAGCGACATTTGCTACTACACTAGATACGATTCCAAATTTATTTATTTGACATAAGTTTTACCCTATTTGCACGATATTATCTTTTGATAGGTGATTCAGTTGACCCCTACTGAACTCTCCACATGCAAGTTGCATCCACCCCCACACCCTACTGACCGTGTCTTGATGTTTGCAAAATTCTCAGGGTGACAAAGGAAAACAGGGCAGCAGGAGTGCTGGATAATTTTTCAGAAGGGGAGAAATATTCAGAGCATGCTCTAAGGAAGTTTGTTCGAAACAAGTCTCCGGAGATTATGCCATCAATCAACGGCTTCTTCAGTAATCCAAACTAATGTCCTAGTCAAGTTTAATTTGGA-T-TAACACCATTATTCTTTG---TCTTCTTTTCCATTGAATGAGATAGACATGAAATGCATTTTTCT-G---GC------CCTAAAAGATATTTGAAAGAAACTTGAATAAATGTAATCAGAACCACAAGTTCCCCTCTCTTTTGACAGGGCACATCTTTTCATATGATATTGAACTGTTGTTTTCCGGATACGTGAAG</genome_strand>
        <mrna_strand>CAGTCTCAAAAAGATCGTAAAGTTTGCGTGTTCTTTCCCCCGTTTTTCTATGGCTTCTTCCACCATTAATCGATGGCTGAGGCCCGAG............................................................................................................................................................................................GTGTATCCACTTTTTGCTGCCGTAGGCGTTGCGGTAGGGATCTGTGGAATGCAATTGGTTCGTAATATCTGCACCAACCCTGAAGTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGACAAAGGAAAACAGGGCAGCAGGAGTGCTGGATAATTTTTCAGAAGGGGAGAAATATTCAGAGCATGCTCTAAGGAAGTTTGTTCGAAACAAGTCTCCGGAGATTATGCCATCAATCAACGGTTTCTTCAGCGATCCAAACTAATGCCCTAGTCAAGTTTAATATGGATTATAACATCATTATTCTTTGTCCTCTTCTTTTCCATTGAATGAGATAGACATGAAATGCATTTTTCTGGCCTGCGATGGGCCTAAAAGATA-TTGAAAGAAACTTGAATAAATGTAATCAGAACCACAAGTT--CCTCCCTTTTGACAGGGCACATCTTTTCATATACTATTGAACTGTTGTTTTCCGGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E421322" ref_strand="+" ref_description="SGN-E421322 [STM-32-N15]">
      <seq>cagtctcaaaaagatcgtaaagtttgcgtgttctttcccccgtttttctatggcttcttccaccattaatcgatggctgaggcccgaggtgtatccactttttgctgccgtaggcgttgcggtagggatctgtggaatgcaattggttcgtaatatctgcaccaaccctgaagtcagggtgacaaaggaaaacagggcagcaggagtgctggataatttttcagaaggggagaaatattcagagcatgctctaaggaagtttgttcgaaacaagtctccggagattatgccatcaatcaacggtttcttcagcgatccaaactaatgccctagtcaagtttaatatggattataacatcattattctttgtcctcttcttttccattgaatgagatagacatgaaatgcatttttctggcctgcgatgggcctaaaagatattgaaagaaacttgaataaatgtaatcagaaccacaagttcctcccttttgacagggcacatcttttcatatactattgaactgttgttttccggaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="135655" stop="133202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135355" g_stop="135268" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="135267" i_stop="135080" i_length="188">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="135079" g_stop="134991" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="177" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134990" i_stop="133852" i_length="1139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="133851" g_stop="133497" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="544" r_length="367" r_score="0.868"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E421322" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E421322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135355" e_stop="135268"/>
          <exon e_start="135079" e_stop="134991"/>
          <exon e_start="133851" e_stop="133497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTCTCAAAAAGATCGTAAAGTTTGCATGTTCTTTCCCCCGTTTTTCTATGGCTTCTTCCACCATTAATCGATGGCTGAGGCCTGAGGTATGTTTTATTCTTCCGCCATAGATCTCCTCCCTTCTATTTCCTTATTATAAAGATTTTTTAAAAACTTCCTATGATATCGGCGATTTTTAATGGATTATTGGGGGCTTTTCTTGTTTAAGGGTTGAATGTTGGTTTAGCGATTAGATCTGAGTGATTATATATCTTCTATATTTGTGGTGGCGCAGGTGTATCCACTTTTTGCAGCCGTAGGCGTTGCTGTAGGGATCTGTGGAATGCAATTGGTTCGTAATATCTGCACCAACCCTGAAGTCAGGTAACCTCTTCATATCCGTTTATGCCTTGTCTAATTTGTGTTAATTTGATTTAGCCAGCTTTAATTGGATACTTTGTCGAATTAAAGATTGTCACGTCAATTCGAGAACTAGATCGGGCATGTATGTAGAGAATTCATGTGATAGCTTAGAATTTTAGGCTTAGTTGATCGATTGATTTAACAATCCAAGGTAACTAACTCCATTGGTAGGCTGCCCAATCCACCACCCTGTAATCTGTATATTATAGGTCGAGCCATTTTCCCTTTTCATATAAACATACATATTTTTTAAAAAAGAAAACGAGTGATTGATCTACCCTTATTTATCTTCCTAAAAACTGCATGCCTCCTTTATGTTTATTGTTTGTTTAGATGCTGATGAAAGGATATATGTATATGTTTGGGTTAGAGATGGATTCAACATTTGAATGGATTCAATTTTTAAGATTTCCTGTATTGACTTGCTTGTTTCGAATTCTATTATTATGGTACTTATTTAGTGAATTTAAAACCCACATACTTCGAGCCAACTAAAGCTACTGGATTTGACTGGACCAATTAGTAATACATAGATCCACCACTGATTGTGATCTACATGAGGATTCTTTGACAATCAATTATTCGATAAAGAAGGAAAGCCTCTAAGAGTTTAACTGGTATGACTTTAAAGCAACATATGAGGTTACAATTGCGAGAAACGGAAGAGGGAAAACCTGGTAAAATTTCTCTAATTTTGGATCAATTTTGTTTGATTCTTTGTTGGTGGTACAAATCAAGTCAGTTGATCAACTGGTATAACATCTGCTAGGCAATGAAACCGCCCATATTTAAGTTGTGTTGTACTAGATTGCATCTTTTTTAGCTGTGGCAGCGTTTGGAATATTATGAAGGAGATTATTGAAAAGTGTAAAAGCCACACCCGAGATTTAGAACACGTGACCGAATGCAATTTTTGAGCGACATTTGCTACTACACTAGATACGATTCCAAATTTATTTATTTGACATAAGTTTTACCCTATTTGCACGATATTATCTTTTGATAGGTGATTCAGTTGACCCCTACTGAACTCTCCACATGCAAGTTGCATCCACCCCCACACCCTACTGACCGTGTCTTGATGTTTGCAAAATTCTCAGGGTGACAAAGGAAAACAGGGCAGCAGGAGTGCTGGATAATTTTTCAGAAGGGGAGAAATATTCAGAGCATGCTCTAAGGAAGTTTGTTCGAAACAAGTCTCCGGAGATTATGCCATCAATCAACGGCTTCTTCAGTAATCCAAACTAATGTCCTAGTCAAGTTTAATTTGGA-T-TAACACCATTATTCTTTG---TCTTCTTTTCCATTGAATGAGATAGACATGAAATGCATTTTTCT-G---GC------CCTAAAAGATATTTGAAAGAAACTTGAATAAATGTAATCAGAACCACAAGTTCCCCTCTCTTTTGACAGGGCACATCTTTTCATATGATATTGAACTGTTGTTTTCCGGATACGTGA</genome_strand>
        <mrna_strand>CAGTCTCAAAAAGATCGTAAAGTTTGCGTGTTCTTTCCCCCGTTTTTCTATGGCTTCTTCCACCATTAATCGATGGCTGAGGCCCGAG............................................................................................................................................................................................GTGTATCCACTTTTTGCTGCCGTAGGCGTTGCGGTAGGGATCTGTGGAATGCAATTGGTTCGTAATATCTGCACCAACCCTGAAGTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGACAAAGGAAAACAGGGCAGCAGGAGTGCTGGATAATTTTTCAGAAGGGGAGAAATATTCAGAGCATGCTCTAAGGAAGTTTGTTCGAAACAAGTCTCCGGAGATTATGCCATCAATCAACGGTTTCTTCAGCGATCCAAACTAATGCCCTAGTCAAGTTTAATATGGATTATAACATCATTATTCTTTGTCCTCTTCTTTTCCATTGAATGAGATAGACATGAAATGCATTTTTCTGGCCTGCGATGGGCCTAAAAGATA-TTGAAAGAAACTTGAATAAATGTAATCAGAACCACAAGTT--CCTCCCTTTTGACAGGGCACATCTTTTCATATACTATTGAACTGTTGTTTTCCGGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E539449" ref_strand="+" ref_description="SGN-E539449 [TUS-59-D12](-)">
      <seq>caaaaagatcgtaaagtttgcatgttctttcccccgtttttctatggcttcttccaccattaatcgatggctgaggcctgaggtgtatccactttttgcagccgtaggcgttgctgtagggatctgtggaatgcaattggttcgtaatatctgcaccaaccctgaagtcagggtgacaaaggaaaacagggcagcaggagtgctggataatttttcagaaggggagaaatattcagagcatgctctaaggaagtttgttcgaaacaagtctccggagattatgccatcaatcaacggcttcttcagtaatccaaactaatgtcctagtcaagtttaatttggattaacaccattattctttgtcttcttttccattgaatgagatagacatgaaatgcatttttctggccctaaaagatatttgaaagaaacttgaataaatgtaatcagaaccacaagttcccctctcttttgacagggcacatcttttcatatgatattgaactgttgttttccggataaaaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="135649" stop="133202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135349" g_stop="135268" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="135267" i_stop="135080" i_length="188">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="135079" g_stop="134991" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="171" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134990" i_stop="133852" i_length="1139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="133851" g_stop="133501" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="522" r_length="351" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="523" polyA_stop="539"/>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E539449" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135349" e_stop="135268"/>
          <exon e_start="135079" e_stop="134991"/>
          <exon e_start="133851" e_stop="133501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAGATCGTAAAGTTTGCATGTTCTTTCCCCCGTTTTTCTATGGCTTCTTCCACCATTAATCGATGGCTGAGGCCTGAGGTATGTTTTATTCTTCCGCCATAGATCTCCTCCCTTCTATTTCCTTATTATAAAGATTTTTTAAAAACTTCCTATGATATCGGCGATTTTTAATGGATTATTGGGGGCTTTTCTTGTTTAAGGGTTGAATGTTGGTTTAGCGATTAGATCTGAGTGATTATATATCTTCTATATTTGTGGTGGCGCAGGTGTATCCACTTTTTGCAGCCGTAGGCGTTGCTGTAGGGATCTGTGGAATGCAATTGGTTCGTAATATCTGCACCAACCCTGAAGTCAGGTAACCTCTTCATATCCGTTTATGCCTTGTCTAATTTGTGTTAATTTGATTTAGCCAGCTTTAATTGGATACTTTGTCGAATTAAAGATTGTCACGTCAATTCGAGAACTAGATCGGGCATGTATGTAGAGAATTCATGTGATAGCTTAGAATTTTAGGCTTAGTTGATCGATTGATTTAACAATCCAAGGTAACTAACTCCATTGGTAGGCTGCCCAATCCACCACCCTGTAATCTGTATATTATAGGTCGAGCCATTTTCCCTTTTCATATAAACATACATATTTTTTAAAAAAGAAAACGAGTGATTGATCTACCCTTATTTATCTTCCTAAAAACTGCATGCCTCCTTTATGTTTATTGTTTGTTTAGATGCTGATGAAAGGATATATGTATATGTTTGGGTTAGAGATGGATTCAACATTTGAATGGATTCAATTTTTAAGATTTCCTGTATTGACTTGCTTGTTTCGAATTCTATTATTATGGTACTTATTTAGTGAATTTAAAACCCACATACTTCGAGCCAACTAAAGCTACTGGATTTGACTGGACCAATTAGTAATACATAGATCCACCACTGATTGTGATCTACATGAGGATTCTTTGACAATCAATTATTCGATAAAGAAGGAAAGCCTCTAAGAGTTTAACTGGTATGACTTTAAAGCAACATATGAGGTTACAATTGCGAGAAACGGAAGAGGGAAAACCTGGTAAAATTTCTCTAATTTTGGATCAATTTTGTTTGATTCTTTGTTGGTGGTACAAATCAAGTCAGTTGATCAACTGGTATAACATCTGCTAGGCAATGAAACCGCCCATATTTAAGTTGTGTTGTACTAGATTGCATCTTTTTTAGCTGTGGCAGCGTTTGGAATATTATGAAGGAGATTATTGAAAAGTGTAAAAGCCACACCCGAGATTTAGAACACGTGACCGAATGCAATTTTTGAGCGACATTTGCTACTACACTAGATACGATTCCAAATTTATTTATTTGACATAAGTTTTACCCTATTTGCACGATATTATCTTTTGATAGGTGATTCAGTTGACCCCTACTGAACTCTCCACATGCAAGTTGCATCCACCCCCACACCCTACTGACCGTGTCTTGATGTTTGCAAAATTCTCAGGGTGACAAAGGAAAACAGGGCAGCAGGAGTGCTGGATAATTTTTCAGAAGGGGAGAAATATTCAGAGCATGCTCTAAGGAAGTTTGTTCGAAACAAGTCTCCGGAGATTATGCCATCAATCAACGGCTTCTTCAGTAATCCAAACTAATGTCCTAGTCAAGTTTAATTTGGATTAACACCATTATTCTTTGTCTTCTTTTCCATTGAATGAGATAGACATGAAATGCATTTTTCTGGCCCTAAAAGATATTTGAAAGAAACTTGAATAAATGTAATCAGAACCACAAGTTCCCCTCTCTTTTGACAGGGCACATCTTTTCATATGATATTGAACTGTTGTTTTCCGGATAC</genome_strand>
        <mrna_strand>CAAAAAGATCGTAAAGTTTGCATGTTCTTTCCCCCGTTTTTCTATGGCTTCTTCCACCATTAATCGATGGCTGAGGCCTGAG............................................................................................................................................................................................GTGTATCCACTTTTTGCAGCCGTAGGCGTTGCTGTAGGGATCTGTGGAATGCAATTGGTTCGTAATATCTGCACCAACCCTGAAGTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGACAAAGGAAAACAGGGCAGCAGGAGTGCTGGATAATTTTTCAGAAGGGGAGAAATATTCAGAGCATGCTCTAAGGAAGTTTGTTCGAAACAAGTCTCCGGAGATTATGCCATCAATCAACGGCTTCTTCAGTAATCCAAACTAATGTCCTAGTCAAGTTTAATTTGGATTAACACCATTATTCTTTGTCTTCTTTTCCATTGAATGAGATAGACATGAAATGCATTTTTCTGGCCCTAAAAGATATTTGAAAGAAACTTGAATAAATGTAATCAGAACCACAAGTTCCCCTCTCTTTTGACAGGGCACATCTTTTCATATGATATTGAACTGTTGTTTTCCGGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E721098" ref_strand="+" ref_description="SGN-E721098 [FC12DB01]">
      <seq>aatcggccgaattgatggcttcttccacccttaatcgatggctgaggcctgaggtgtatccactttttgcacccgtaggcgttgctgtagggatctgtggaatgcaattggttcgtaatatctgcaccaaccctgaagtcagggtgacaaaggaaaacagggcagcaggagtgctggataatttttcagaaggggagaaatattcagagcatgctctaaggaagtttgttcgaaacaagtctccggagattatgccatcaatcaacggcttcttcagtaatccaaactaatgtcctagtcaagtttaatttggattaacaccattattctttgtcttcttttccattgaatgagatagacatgaaatgcatttttctggccctaaaagatatttgaaagaaacttgaataaatgtaatcagaaccacaagttcccctctcttttgacagggcacatcttttcatatgatattgaactgttgttttccggataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="135606" stop="133202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135306" g_stop="135268" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="53" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="135267" i_stop="135080" i_length="188">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="135079" g_stop="134991" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="142" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134990" i_stop="133852" i_length="1139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="133851" g_stop="133501" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="493" r_length="351" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="494" polyA_stop="529"/>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E721098" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135306" e_stop="135268"/>
          <exon e_start="135079" e_stop="134991"/>
          <exon e_start="133851" e_stop="133501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTTCTTCCACCATTAATCGATGGCTGAGGCCTGAGGTATGTTTTATTCTTCCGCCATAGATCTCCTCCCTTCTATTTCCTTATTATAAAGATTTTTTAAAAACTTCCTATGATATCGGCGATTTTTAATGGATTATTGGGGGCTTTTCTTGTTTAAGGGTTGAATGTTGGTTTAGCGATTAGATCTGAGTGATTATATATCTTCTATATTTGTGGTGGCGCAGGTGTATCCACTTTTTGCAGCCGTAGGCGTTGCTGTAGGGATCTGTGGAATGCAATTGGTTCGTAATATCTGCACCAACCCTGAAGTCAGGTAACCTCTTCATATCCGTTTATGCCTTGTCTAATTTGTGTTAATTTGATTTAGCCAGCTTTAATTGGATACTTTGTCGAATTAAAGATTGTCACGTCAATTCGAGAACTAGATCGGGCATGTATGTAGAGAATTCATGTGATAGCTTAGAATTTTAGGCTTAGTTGATCGATTGATTTAACAATCCAAGGTAACTAACTCCATTGGTAGGCTGCCCAATCCACCACCCTGTAATCTGTATATTATAGGTCGAGCCATTTTCCCTTTTCATATAAACATACATATTTTTTAAAAAAGAAAACGAGTGATTGATCTACCCTTATTTATCTTCCTAAAAACTGCATGCCTCCTTTATGTTTATTGTTTGTTTAGATGCTGATGAAAGGATATATGTATATGTTTGGGTTAGAGATGGATTCAACATTTGAATGGATTCAATTTTTAAGATTTCCTGTATTGACTTGCTTGTTTCGAATTCTATTATTATGGTACTTATTTAGTGAATTTAAAACCCACATACTTCGAGCCAACTAAAGCTACTGGATTTGACTGGACCAATTAGTAATACATAGATCCACCACTGATTGTGATCTACATGAGGATTCTTTGACAATCAATTATTCGATAAAGAAGGAAAGCCTCTAAGAGTTTAACTGGTATGACTTTAAAGCAACATATGAGGTTACAATTGCGAGAAACGGAAGAGGGAAAACCTGGTAAAATTTCTCTAATTTTGGATCAATTTTGTTTGATTCTTTGTTGGTGGTACAAATCAAGTCAGTTGATCAACTGGTATAACATCTGCTAGGCAATGAAACCGCCCATATTTAAGTTGTGTTGTACTAGATTGCATCTTTTTTAGCTGTGGCAGCGTTTGGAATATTATGAAGGAGATTATTGAAAAGTGTAAAAGCCACACCCGAGATTTAGAACACGTGACCGAATGCAATTTTTGAGCGACATTTGCTACTACACTAGATACGATTCCAAATTTATTTATTTGACATAAGTTTTACCCTATTTGCACGATATTATCTTTTGATAGGTGATTCAGTTGACCCCTACTGAACTCTCCACATGCAAGTTGCATCCACCCCCACACCCTACTGACCGTGTCTTGATGTTTGCAAAATTCTCAGGGTGACAAAGGAAAACAGGGCAGCAGGAGTGCTGGATAATTTTTCAGAAGGGGAGAAATATTCAGAGCATGCTCTAAGGAAGTTTGTTCGAAACAAGTCTCCGGAGATTATGCCATCAATCAACGGCTTCTTCAGTAATCCAAACTAATGTCCTAGTCAAGTTTAATTTGGATTAACACCATTATTCTTTGTCTTCTTTTCCATTGAATGAGATAGACATGAAATGCATTTTTCTGGCCCTAAAAGATATTTGAAAGAAACTTGAATAAATGTAATCAGAACCACAAGTTCCCCTCTCTTTTGACAGGGCACATCTTTTCATATGATATTGAACTGTTGTTTTCCGGATAC</genome_strand>
        <mrna_strand>ATGGCTTCTTCCACCCTTAATCGATGGCTGAGGCCTGAG............................................................................................................................................................................................GTGTATCCACTTTTTGCACCCGTAGGCGTTGCTGTAGGGATCTGTGGAATGCAATTGGTTCGTAATATCTGCACCAACCCTGAAGTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGACAAAGGAAAACAGGGCAGCAGGAGTGCTGGATAATTTTTCAGAAGGGGAGAAATATTCAGAGCATGCTCTAAGGAAGTTTGTTCGAAACAAGTCTCCGGAGATTATGCCATCAATCAACGGCTTCTTCAGTAATCCAAACTAATGTCCTAGTCAAGTTTAATTTGGATTAACACCATTATTCTTTGTCTTCTTTTCCATTGAATGAGATAGACATGAAATGCATTTTTCTGGCCCTAAAAGATATTTGAAAGAAACTTGAATAAATGTAATCAGAACCACAAGTTCCCCTCTCTTTTGACAGGGCACATCTTTTCATATGATATTGAACTGTTGTTTTCCGGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E349306" ref_strand="+" ref_description="SGN-E349306 [cTOS-1-E11]">
      <seq>aggagtgctggataatttttcagaaggggagaaatattcagagcatgctctaaggaagtttgttcgaaacaagtctccggagattatgccatcaatcaacggcttcttcagtaatccaaactaatgtcctagtcaagtttaatttggattaacaccattattctttgtcttcttttccattgaatgagatagacatgaaatgcatttttctggccctaaaagatatttgaaagaaacttgaataaatgtaatcagaaccacaagttcccctctcttttgacagggcacatcttttcatatgatattgaactgttgttttccggataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="134127" stop="133202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133827" g_stop="133501" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="328" polyA_stop="337"/>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E349306" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>327</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133827" e_stop="133501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGTGCTGGATAATTTTTCAGAAGGGGAGAAATATTCAGAGCATGCTCTAAGGAAGTTTGTTCGAAACAAGTCTCCGGAGATTATGCCATCAATCAACGGCTTCTTCAGTAATCCAAACTAATGTCCTAGTCAAGTTTAATTTGGATTAACACCATTATTCTTTGTCTTCTTTTCCATTGAATGAGATAGACATGAAATGCATTTTTCTGGCCCTAAAAGATATTTGAAAGAAACTTGAATAAATGTAATCAGAACCACAAGTTCCCCTCTCTTTTGACAGGGCACATCTTTTCATATGATATTGAACTGTTGTTTTCCGGATAC</genome_strand>
        <mrna_strand>AGGAGTGCTGGATAATTTTTCAGAAGGGGAGAAATATTCAGAGCATGCTCTAAGGAAGTTTGTTCGAAACAAGTCTCCGGAGATTATGCCATCAATCAACGGCTTCTTCAGTAATCCAAACTAATGTCCTAGTCAAGTTTAATTTGGATTAACACCATTATTCTTTGTCTTCTTTTCCATTGAATGAGATAGACATGAAATGCATTTTTCTGGCCCTAAAAGATATTTGAAAGAAACTTGAATAAATGTAATCAGAACCACAAGTTCCCCTCTCTTTTGACAGGGCACATCTTTTCATATGATATTGAACTGTTGTTTTCCGGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352605" ref_strand="+" ref_description="SGN-E352605 [cTOS-9-L2]">
      <seq>aggagtgctggataatttttcagaaggggagaaatattcagagcatgctctaaggaagtttgttcgaaacaagtctccggagattatgccatcaatcaacggcttcttcagtaatccaaactaatgtcctagtcaagtttaatttggattaacaccattattctttgtcttcttttccattgaatgagatagacatgaaatgcatttttctggccctaaaagatatttgaaagaaacttgaataaatgtaatcagaaccacaagttcccctctcttttgacagggcacatcttttcatatgatattgaactgttgttttccggataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="134127" stop="133202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133827" g_stop="133501" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="328" polyA_stop="337"/>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E352605" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>327</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352605" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133827" e_stop="133501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGTGCTGGATAATTTTTCAGAAGGGGAGAAATATTCAGAGCATGCTCTAAGGAAGTTTGTTCGAAACAAGTCTCCGGAGATTATGCCATCAATCAACGGCTTCTTCAGTAATCCAAACTAATGTCCTAGTCAAGTTTAATTTGGATTAACACCATTATTCTTTGTCTTCTTTTCCATTGAATGAGATAGACATGAAATGCATTTTTCTGGCCCTAAAAGATATTTGAAAGAAACTTGAATAAATGTAATCAGAACCACAAGTTCCCCTCTCTTTTGACAGGGCACATCTTTTCATATGATATTGAACTGTTGTTTTCCGGATAC</genome_strand>
        <mrna_strand>AGGAGTGCTGGATAATTTTTCAGAAGGGGAGAAATATTCAGAGCATGCTCTAAGGAAGTTTGTTCGAAACAAGTCTCCGGAGATTATGCCATCAATCAACGGCTTCTTCAGTAATCCAAACTAATGTCCTAGTCAAGTTTAATTTGGATTAACACCATTATTCTTTGTCTTCTTTTCCATTGAATGAGATAGACATGAAATGCATTTTTCTGGCCCTAAAAGATATTTGAAAGAAACTTGAATAAATGTAATCAGAACCACAAGTTCCCCTCTCTTTTGACAGGGCACATCTTTTCATATGATATTGAACTGTTGTTTTCCGGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E357521" ref_strand="+" ref_description="SGN-E357521 [cTOS-23-D13]">
      <seq>aggagtgctggataatttttcagaaggggagaaatattcagagcatgctctaaggaagtttgttcgaaacaagtctccggagattatgccatcaatcaacggcttcttcagtaatccaaactaatgtcctagtcaagtttaatttggattaacaccattattctttgtcttcttttccattgaatgagatagacatgaaatgcatttttctggccctaaaagatatttgaaagaaacttgaataaatgtaatcagaaccacaagttcccctctcttttgacagggcacatcttttcatatgatattgaactgttgttttccggataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="134127" stop="133202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133827" g_stop="133501" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="328" polyA_stop="337"/>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E357521" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>327</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133827" e_stop="133501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGTGCTGGATAATTTTTCAGAAGGGGAGAAATATTCAGAGCATGCTCTAAGGAAGTTTGTTCGAAACAAGTCTCCGGAGATTATGCCATCAATCAACGGCTTCTTCAGTAATCCAAACTAATGTCCTAGTCAAGTTTAATTTGGATTAACACCATTATTCTTTGTCTTCTTTTCCATTGAATGAGATAGACATGAAATGCATTTTTCTGGCCCTAAAAGATATTTGAAAGAAACTTGAATAAATGTAATCAGAACCACAAGTTCCCCTCTCTTTTGACAGGGCACATCTTTTCATATGATATTGAACTGTTGTTTTCCGGATAC</genome_strand>
        <mrna_strand>AGGAGTGCTGGATAATTTTTCAGAAGGGGAGAAATATTCAGAGCATGCTCTAAGGAAGTTTGTTCGAAACAAGTCTCCGGAGATTATGCCATCAATCAACGGCTTCTTCAGTAATCCAAACTAATGTCCTAGTCAAGTTTAATTTGGATTAACACCATTATTCTTTGTCTTCTTTTCCATTGAATGAGATAGACATGAAATGCATTTTTCTGGCCCTAAAAGATATTTGAAAGAAACTTGAATAAATGTAATCAGAACCACAAGTTCCCCTCTCTTTTGACAGGGCACATCTTTTCATATGATATTGAACTGTTGTTTTCCGGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E465461" ref_strand="+" ref_description="SGN-E465461 [cPRO-21-M21]">
      <seq>caacagtctcaaaaagatcgtaaagtttgcgtgttctttcccccgtttttctatggcttcttccaccattaatcgatggctgaggcccgaggtgtatccactttttgctgccgtaggcgttgcggtagggatctgtggaatgcaattggttcgtaatatctgcaccaaccctgaagtcagggtgacaaaggaaaacagggcagcaggagtgctggataatttttcagaaggggagaaatattcagagcatgctctaaggaagtttgttcgaaacaagtctccggagattatgccatcaatcaacggtttcttcagcgatccaaactaatgccctagtcaagtttaatatggattataacatcattattctttgtcctcttcttttccattgaatgagatagacatgaaatgcatttttctggcctgcgatgggcctaaaagatattgaaagaaacttgaataaatgtaatcagaaccacaagttcctcccttttgacagggcacatcttttcatatactattgaactggtgntttccggaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="135658" stop="133202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135358" g_stop="135268" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="135267" i_stop="135080" i_length="188">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="135079" g_stop="134991" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="180" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134990" i_stop="133852" i_length="1139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="133851" g_stop="133505" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="539" r_length="359" r_score="0.873"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="540" polyA_stop="556"/>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E465461" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E465461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135358" e_stop="135268"/>
          <exon e_start="135079" e_stop="134991"/>
          <exon e_start="133851" e_stop="133505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAGTCTCAAAAAGATCGTAAAGTTTGCATGTTCTTTCCCCCGTTTTTCTATGGCTTCTTCCACCATTAATCGATGGCTGAGGCCTGAGGTATGTTTTATTCTTCCGCCATAGATCTCCTCCCTTCTATTTCCTTATTATAAAGATTTTTTAAAAACTTCCTATGATATCGGCGATTTTTAATGGATTATTGGGGGCTTTTCTTGTTTAAGGGTTGAATGTTGGTTTAGCGATTAGATCTGAGTGATTATATATCTTCTATATTTGTGGTGGCGCAGGTGTATCCACTTTTTGCAGCCGTAGGCGTTGCTGTAGGGATCTGTGGAATGCAATTGGTTCGTAATATCTGCACCAACCCTGAAGTCAGGTAACCTCTTCATATCCGTTTATGCCTTGTCTAATTTGTGTTAATTTGATTTAGCCAGCTTTAATTGGATACTTTGTCGAATTAAAGATTGTCACGTCAATTCGAGAACTAGATCGGGCATGTATGTAGAGAATTCATGTGATAGCTTAGAATTTTAGGCTTAGTTGATCGATTGATTTAACAATCCAAGGTAACTAACTCCATTGGTAGGCTGCCCAATCCACCACCCTGTAATCTGTATATTATAGGTCGAGCCATTTTCCCTTTTCATATAAACATACATATTTTTTAAAAAAGAAAACGAGTGATTGATCTACCCTTATTTATCTTCCTAAAAACTGCATGCCTCCTTTATGTTTATTGTTTGTTTAGATGCTGATGAAAGGATATATGTATATGTTTGGGTTAGAGATGGATTCAACATTTGAATGGATTCAATTTTTAAGATTTCCTGTATTGACTTGCTTGTTTCGAATTCTATTATTATGGTACTTATTTAGTGAATTTAAAACCCACATACTTCGAGCCAACTAAAGCTACTGGATTTGACTGGACCAATTAGTAATACATAGATCCACCACTGATTGTGATCTACATGAGGATTCTTTGACAATCAATTATTCGATAAAGAAGGAAAGCCTCTAAGAGTTTAACTGGTATGACTTTAAAGCAACATATGAGGTTACAATTGCGAGAAACGGAAGAGGGAAAACCTGGTAAAATTTCTCTAATTTTGGATCAATTTTGTTTGATTCTTTGTTGGTGGTACAAATCAAGTCAGTTGATCAACTGGTATAACATCTGCTAGGCAATGAAACCGCCCATATTTAAGTTGTGTTGTACTAGATTGCATCTTTTTTAGCTGTGGCAGCGTTTGGAATATTATGAAGGAGATTATTGAAAAGTGTAAAAGCCACACCCGAGATTTAGAACACGTGACCGAATGCAATTTTTGAGCGACATTTGCTACTACACTAGATACGATTCCAAATTTATTTATTTGACATAAGTTTTACCCTATTTGCACGATATTATCTTTTGATAGGTGATTCAGTTGACCCCTACTGAACTCTCCACATGCAAGTTGCATCCACCCCCACACCCTACTGACCGTGTCTTGATGTTTGCAAAATTCTCAGGGTGACAAAGGAAAACAGGGCAGCAGGAGTGCTGGATAATTTTTCAGAAGGGGAGAAATATTCAGAGCATGCTCTAAGGAAGTTTGTTCGAAACAAGTCTCCGGAGATTATGCCATCAATCAACGGCTTCTTCAGTAATCCAAACTAATGTCCTAGTCAAGTTTAATTTGGA-T-TAACACCATTATTCTTTG---TCTTCTTTTCCATTGAATGAGATAGACATGAAATGCATTTTTCT-G---GC------CCTAAAAGATATTTGAAAGAAACTTGAATAAATGTAATCAGAACCACAAGTTCCCCTCTCTTTTGACAGGGCACATCTTTTCATATGATATTGAACTGTTGTTTTCCGG</genome_strand>
        <mrna_strand>CAACAGTCTCAAAAAGATCGTAAAGTTTGCGTGTTCTTTCCCCCGTTTTTCTATGGCTTCTTCCACCATTAATCGATGGCTGAGGCCCGAG............................................................................................................................................................................................GTGTATCCACTTTTTGCTGCCGTAGGCGTTGCGGTAGGGATCTGTGGAATGCAATTGGTTCGTAATATCTGCACCAACCCTGAAGTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGACAAAGGAAAACAGGGCAGCAGGAGTGCTGGATAATTTTTCAGAAGGGGAGAAATATTCAGAGCATGCTCTAAGGAAGTTTGTTCGAAACAAGTCTCCGGAGATTATGCCATCAATCAACGGTTTCTTCAGCGATCCAAACTAATGCCCTAGTCAAGTTTAATATGGATTATAACATCATTATTCTTTGTCCTCTTCTTTTCCATTGAATGAGATAGACATGAAATGCATTTTTCTGGCCTGCGATGGGCCTAAAAGATA-TTGAAAGAAACTTGAATAAATGTAATCAGAACCACAAGTT--CCTCCCTTTTGACAGGGCACATCTTTTCATATACTATTGAACTGGTGNTTTCCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E422055" ref_strand="-" ref_description="SGN-E422055 [STM-34-C7]">
      <seq>cagtctcaaaaagatcgtaaagtttgcgtgttctttcccccgtttttctatggcttcttccaccattaatcgatggctgaggcccgaggtgtatccactttttgctgccgtaggcgttgcggtagggatctgtggaatgcaattggttcgtaatatctgcaccaaccctgaagtcagggtgacaaaggaaaacagggcagcaggagtgctggataatttttcagaaggggagaaatattcagagcatgctctaaggaagtttgttcgaaacaagtctccggagattatgccatcaatcaacggtttcttcagcgatccaaactaatgccctagtcaagtttaatatggattataacatcattattctttgtcctcttcttttccattgaatgagatagacatgaaatgcatttttctggcctgcgatgggcctaaaagatattgaaagaaacttgaataaatgtaatcagaaccacaagttcctcccttttgacagggcacatcttttcatatgatattgaactgtgttttccggaaattaagattgaaaaaactcaagggggggcccgtacccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="135655" stop="133202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135355" g_stop="135268" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="135267" i_stop="135080" i_length="188">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="135079" g_stop="134991" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="177" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134990" i_stop="133852" i_length="1139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="133851" g_stop="133505" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="535" r_length="358" r_score="0.882"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E422055" ref_strand="-">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E422055" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="135355" e_stop="135268"/>
          <exon e_start="135079" e_stop="134991"/>
          <exon e_start="133851" e_stop="133505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTCTCAAAAAGATCGTAAAGTTTGCATGTTCTTTCCCCCGTTTTTCTATGGCTTCTTCCACCATTAATCGATGGCTGAGGCCTGAGGTATGTTTTATTCTTCCGCCATAGATCTCCTCCCTTCTATTTCCTTATTATAAAGATTTTTTAAAAACTTCCTATGATATCGGCGATTTTTAATGGATTATTGGGGGCTTTTCTTGTTTAAGGGTTGAATGTTGGTTTAGCGATTAGATCTGAGTGATTATATATCTTCTATATTTGTGGTGGCGCAGGTGTATCCACTTTTTGCAGCCGTAGGCGTTGCTGTAGGGATCTGTGGAATGCAATTGGTTCGTAATATCTGCACCAACCCTGAAGTCAGGTAACCTCTTCATATCCGTTTATGCCTTGTCTAATTTGTGTTAATTTGATTTAGCCAGCTTTAATTGGATACTTTGTCGAATTAAAGATTGTCACGTCAATTCGAGAACTAGATCGGGCATGTATGTAGAGAATTCATGTGATAGCTTAGAATTTTAGGCTTAGTTGATCGATTGATTTAACAATCCAAGGTAACTAACTCCATTGGTAGGCTGCCCAATCCACCACCCTGTAATCTGTATATTATAGGTCGAGCCATTTTCCCTTTTCATATAAACATACATATTTTTTAAAAAAGAAAACGAGTGATTGATCTACCCTTATTTATCTTCCTAAAAACTGCATGCCTCCTTTATGTTTATTGTTTGTTTAGATGCTGATGAAAGGATATATGTATATGTTTGGGTTAGAGATGGATTCAACATTTGAATGGATTCAATTTTTAAGATTTCCTGTATTGACTTGCTTGTTTCGAATTCTATTATTATGGTACTTATTTAGTGAATTTAAAACCCACATACTTCGAGCCAACTAAAGCTACTGGATTTGACTGGACCAATTAGTAATACATAGATCCACCACTGATTGTGATCTACATGAGGATTCTTTGACAATCAATTATTCGATAAAGAAGGAAAGCCTCTAAGAGTTTAACTGGTATGACTTTAAAGCAACATATGAGGTTACAATTGCGAGAAACGGAAGAGGGAAAACCTGGTAAAATTTCTCTAATTTTGGATCAATTTTGTTTGATTCTTTGTTGGTGGTACAAATCAAGTCAGTTGATCAACTGGTATAACATCTGCTAGGCAATGAAACCGCCCATATTTAAGTTGTGTTGTACTAGATTGCATCTTTTTTAGCTGTGGCAGCGTTTGGAATATTATGAAGGAGATTATTGAAAAGTGTAAAAGCCACACCCGAGATTTAGAACACGTGACCGAATGCAATTTTTGAGCGACATTTGCTACTACACTAGATACGATTCCAAATTTATTTATTTGACATAAGTTTTACCCTATTTGCACGATATTATCTTTTGATAGGTGATTCAGTTGACCCCTACTGAACTCTCCACATGCAAGTTGCATCCACCCCCACACCCTACTGACCGTGTCTTGATGTTTGCAAAATTCTCAGGGTGACAAAGGAAAACAGGGCAGCAGGAGTGCTGGATAATTTTTCAGAAGGGGAGAAATATTCAGAGCATGCTCTAAGGAAGTTTGTTCGAAACAAGTCTCCGGAGATTATGCCATCAATCAACGGCTTCTTCAGTAATCCAAACTAATGTCCTAGTCAAGTTTAATTTGGA-T-TAACACCATTATTCTTTG---TCTTCTTTTCCATTGAATGAGATAGACATGAAATGCATTTTTCT-G---GC------CCTAAAAGATATTTGAAAGAAACTTGAATAAATGTAATCAGAACCACAAGTTCCCCTCTCTTTTGACAGGGCACATCTTTTCATATGATATTGAACTGTTGTTTTCCGG</genome_strand>
        <mrna_strand>CAGTCTCAAAAAGATCGTAAAGTTTGCGTGTTCTTTCCCCCGTTTTTCTATGGCTTCTTCCACCATTAATCGATGGCTGAGGCCCGAG............................................................................................................................................................................................GTGTATCCACTTTTTGCTGCCGTAGGCGTTGCGGTAGGGATCTGTGGAATGCAATTGGTTCGTAATATCTGCACCAACCCTGAAGTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGACAAAGGAAAACAGGGCAGCAGGAGTGCTGGATAATTTTTCAGAAGGGGAGAAATATTCAGAGCATGCTCTAAGGAAGTTTGTTCGAAACAAGTCTCCGGAGATTATGCCATCAATCAACGGTTTCTTCAGCGATCCAAACTAATGCCCTAGTCAAGTTTAATATGGATTATAACATCATTATTCTTTGTCCTCTTCTTTTCCATTGAATGAGATAGACATGAAATGCATTTTTCTGGCCTGCGATGGGCCTAAAAGATA-TTGAAAGAAACTTGAATAAATGTAATCAGAACCACAAGTT--CCTCCCTTTTGACAGGGCACATCTTTTCATATGATATTGAACTG-TGTTTTCCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E234216" ref_strand="+" ref_description="SGN-E234216 [cLEL-8-K17](-)">
      <seq>ggcaccaggtttgttcgaaacaagtctccggagattatgccatcaaacaacggcttcttcagtaatccaaactaatgtcctagtcaagtttaatttggattaacaccattattctttgtcttcttttccattgaatgagatagacatgaaatgcatttttctggccctaaaagatatttgaaagaaacttgaataaatgtaatcagaaccacaagttcccctctcttttgacagggcacatcttttcatatgatattgaactgttgttttccggaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="134072" stop="133202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133778" g_stop="133505" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="275" polyA_stop="291"/>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E234216" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>274</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133778" e_stop="133505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGGAAGTTTGTTCGAAACAAGTCTCCGGAGATTATGCCATCAATCAACGGCTTCTTCAGTAATCCAAACTAATGTCCTAGTCAAGTTTAATTTGGATTAACACCATTATTCTTTGTCTTCTTTTCCATTGAATGAGATAGACATGAAATGCATTTTTCTGGCCCTAAAAGATATTTGAAAGAAACTTGAATAAATGTAATCAGAACCACAAGTTCCCCTCTCTTTTGACAGGGCACATCTTTTCATATGATATTGAACTGTTGTTTTCCGG</genome_strand>
        <mrna_strand>GGCACCAGGTTTGTTCGAAACAAGTCTCCGGAGATTATGCCATCAAACAACGGCTTCTTCAGTAATCCAAACTAATGTCCTAGTCAAGTTTAATTTGGATTAACACCATTATTCTTTGTCTTCTTTTCCATTGAATGAGATAGACATGAAATGCATTTTTCTGGCCCTAAAAGATATTTGAAAGAAACTTGAATAAATGTAATCAGAACCACAAGTTCCCCTCTCTTTTGACAGGGCACATCTTTTCATATGATATTGAACTGTTGTTTTCCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E234133" ref_strand="+" ref_description="SGN-E234133 [cLEL-8-K17](-)">
      <seq>tctccggagattatgccatcaatcaacggcttcttcagtaatccaaactaatgtcctagtcaagtttaatttggattaacaccattattctttgtcttcttttccattgaatgagatagacatgaaatgcatttttctggccctaaaagatatttgaaagaaacttgaataaatgtaatcagaaccacaagttcccctctcttttgacagggcacatcttttcatatgatattgaactgttgttttccggaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="134054" stop="133202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133754" g_stop="133505" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="251" polyA_stop="267"/>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E234133" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>250</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133754" e_stop="133505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCGGAGATTATGCCATCAATCAACGGCTTCTTCAGTAATCCAAACTAATGTCCTAGTCAAGTTTAATTTGGATTAACACCATTATTCTTTGTCTTCTTTTCCATTGAATGAGATAGACATGAAATGCATTTTTCTGGCCCTAAAAGATATTTGAAAGAAACTTGAATAAATGTAATCAGAACCACAAGTTCCCCTCTCTTTTGACAGGGCACATCTTTTCATATGATATTGAACTGTTGTTTTCCGG</genome_strand>
        <mrna_strand>TCTCCGGAGATTATGCCATCAATCAACGGCTTCTTCAGTAATCCAAACTAATGTCCTAGTCAAGTTTAATTTGGATTAACACCATTATTCTTTGTCTTCTTTTCCATTGAATGAGATAGACATGAAATGCATTTTTCTGGCCCTAAAAGATATTTGAAAGAAACTTGAATAAATGTAATCAGAACCACAAGTTCCCCTCTCTTTTGACAGGGCACATCTTTTCATATGATATTGAACTGTTGTTTTCCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E309162" ref_strand="+" ref_description="SGN-E309162 [cLEZ-12-C7]">
      <seq>ctcgtgccgaattcggcacgaggcagtctcaaaaagatcgtaaagtttgcatgttctttcccccgtttttctatggcttcttccaccattaatcgatggctgaggcctgaggtgtatccactttttgcagccgtaggcgttgctgtagggatctgtggaatgcaattggttcgtaatatctgcaccaaccctgaagtcagggtgacaaaggaaaacagggcagcaggagtgctggataatttttcagaaggggagaaatattcagagcatgctctaaggaagtttgttcgaaacaagtctccggagattatgccatcaatcaacggcttcttcagtaatccaaactaatgtcctagtcaagtttaatttggattaacaccattattctttgtcttcttttccattgaatgagatagacatgaaatgcatttttctggccctaaaagatatttgaaagaaacttgaataaatgtaatcagaaccacaagttcccctctcttttgacagggcacatcttttcatatgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="135655" stop="133224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135354" g_stop="135268" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="111" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="135267" i_stop="135080" i_length="188">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="135079" g_stop="134991" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="200" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134990" i_stop="133852" i_length="1139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="133851" g_stop="133517" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="535" r_length="335" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E309162" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135354" e_stop="135268"/>
          <exon e_start="135079" e_stop="134991"/>
          <exon e_start="133851" e_stop="133517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCTCAAAAAGATCGTAAAGTTTGCATGTTCTTTCCCCCGTTTTTCTATGGCTTCTTCCACCATTAATCGATGGCTGAGGCCTGAGGTATGTTTTATTCTTCCGCCATAGATCTCCTCCCTTCTATTTCCTTATTATAAAGATTTTTTAAAAACTTCCTATGATATCGGCGATTTTTAATGGATTATTGGGGGCTTTTCTTGTTTAAGGGTTGAATGTTGGTTTAGCGATTAGATCTGAGTGATTATATATCTTCTATATTTGTGGTGGCGCAGGTGTATCCACTTTTTGCAGCCGTAGGCGTTGCTGTAGGGATCTGTGGAATGCAATTGGTTCGTAATATCTGCACCAACCCTGAAGTCAGGTAACCTCTTCATATCCGTTTATGCCTTGTCTAATTTGTGTTAATTTGATTTAGCCAGCTTTAATTGGATACTTTGTCGAATTAAAGATTGTCACGTCAATTCGAGAACTAGATCGGGCATGTATGTAGAGAATTCATGTGATAGCTTAGAATTTTAGGCTTAGTTGATCGATTGATTTAACAATCCAAGGTAACTAACTCCATTGGTAGGCTGCCCAATCCACCACCCTGTAATCTGTATATTATAGGTCGAGCCATTTTCCCTTTTCATATAAACATACATATTTTTTAAAAAAGAAAACGAGTGATTGATCTACCCTTATTTATCTTCCTAAAAACTGCATGCCTCCTTTATGTTTATTGTTTGTTTAGATGCTGATGAAAGGATATATGTATATGTTTGGGTTAGAGATGGATTCAACATTTGAATGGATTCAATTTTTAAGATTTCCTGTATTGACTTGCTTGTTTCGAATTCTATTATTATGGTACTTATTTAGTGAATTTAAAACCCACATACTTCGAGCCAACTAAAGCTACTGGATTTGACTGGACCAATTAGTAATACATAGATCCACCACTGATTGTGATCTACATGAGGATTCTTTGACAATCAATTATTCGATAAAGAAGGAAAGCCTCTAAGAGTTTAACTGGTATGACTTTAAAGCAACATATGAGGTTACAATTGCGAGAAACGGAAGAGGGAAAACCTGGTAAAATTTCTCTAATTTTGGATCAATTTTGTTTGATTCTTTGTTGGTGGTACAAATCAAGTCAGTTGATCAACTGGTATAACATCTGCTAGGCAATGAAACCGCCCATATTTAAGTTGTGTTGTACTAGATTGCATCTTTTTTAGCTGTGGCAGCGTTTGGAATATTATGAAGGAGATTATTGAAAAGTGTAAAAGCCACACCCGAGATTTAGAACACGTGACCGAATGCAATTTTTGAGCGACATTTGCTACTACACTAGATACGATTCCAAATTTATTTATTTGACATAAGTTTTACCCTATTTGCACGATATTATCTTTTGATAGGTGATTCAGTTGACCCCTACTGAACTCTCCACATGCAAGTTGCATCCACCCCCACACCCTACTGACCGTGTCTTGATGTTTGCAAAATTCTCAGGGTGACAAAGGAAAACAGGGCAGCAGGAGTGCTGGATAATTTTTCAGAAGGGGAGAAATATTCAGAGCATGCTCTAAGGAAGTTTGTTCGAAACAAGTCTCCGGAGATTATGCCATCAATCAACGGCTTCTTCAGTAATCCAAACTAATGTCCTAGTCAAGTTTAATTTGGATTAACACCATTATTCTTTGTCTTCTTTTCCATTGAATGAGATAGACATGAAATGCATTTTTCTGGCCCTAAAAGATATTTGAAAGAAACTTGAATAAATGTAATCAGAACCACAAGTTCCCCTCTCTTTTGACAGGGCACATCTTTTCATATGATATTGAACT</genome_strand>
        <mrna_strand>AGTCTCAAAAAGATCGTAAAGTTTGCATGTTCTTTCCCCCGTTTTTCTATGGCTTCTTCCACCATTAATCGATGGCTGAGGCCTGAG............................................................................................................................................................................................GTGTATCCACTTTTTGCAGCCGTAGGCGTTGCTGTAGGGATCTGTGGAATGCAATTGGTTCGTAATATCTGCACCAACCCTGAAGTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGACAAAGGAAAACAGGGCAGCAGGAGTGCTGGATAATTTTTCAGAAGGGGAGAAATATTCAGAGCATGCTCTAAGGAAGTTTGTTCGAAACAAGTCTCCGGAGATTATGCCATCAATCAACGGCTTCTTCAGTAATCCAAACTAATGTCCTAGTCAAGTTTAATTTGGATTAACACCATTATTCTTTGTCTTCTTTTCCATTGAATGAGATAGACATGAAATGCATTTTTCTGGCCCTAAAAGATATTTGAAAGAAACTTGAATAAATGTAATCAGAACCACAAGTTCCCCTCTCTTTTGACAGGGCACATCTTTTCATATGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E304907" ref_strand="+" ref_description="SGN-E304907 [cLEX-10-M2]">
      <seq>tcaaaaagatcgtaaagtttgcatgttctttcccccgtttttctatggcttcttccaccattaatcgatggctgaagcctgaagtgtatccactttttgcagccgtaagcgttgctgtagggatctgtggaatgcaattggttcgtaatatctgcaccaaccctgaagtcagggtgacaaaggaaaacagggcagcaggagtgctggataatttttcagaaggggagaaatattcagagcatgctctaaggaagtttgttcgaaacaagtctccggagattatgccatcaatcaacggcttcttcagtaatccaaactaatgtcctagtcaagtttaatttggattaacaccattattctttgtcttcttttccattgaatgagatagacatgaaatgcatttttctggccctaaaagatatttgaaagaaacttgaataaatgtaatcagaaccacaagttcccctctcttttgacagggcacatcttttcatatgatattgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="135650" stop="133218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135350" g_stop="135268" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="135267" i_stop="135080" i_length="188">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="135079" g_stop="134991" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="172" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134990" i_stop="133852" i_length="1139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="133851" g_stop="133518" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="506" r_length="334" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E304907" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135350" e_stop="135268"/>
          <exon e_start="135079" e_stop="134991"/>
          <exon e_start="133851" e_stop="133518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAAAGATCGTAAAGTTTGCATGTTCTTTCCCCCGTTTTTCTATGGCTTCTTCCACCATTAATCGATGGCTGAGGCCTGAGGTATGTTTTATTCTTCCGCCATAGATCTCCTCCCTTCTATTTCCTTATTATAAAGATTTTTTAAAAACTTCCTATGATATCGGCGATTTTTAATGGATTATTGGGGGCTTTTCTTGTTTAAGGGTTGAATGTTGGTTTAGCGATTAGATCTGAGTGATTATATATCTTCTATATTTGTGGTGGCGCAGGTGTATCCACTTTTTGCAGCCGTAGGCGTTGCTGTAGGGATCTGTGGAATGCAATTGGTTCGTAATATCTGCACCAACCCTGAAGTCAGGTAACCTCTTCATATCCGTTTATGCCTTGTCTAATTTGTGTTAATTTGATTTAGCCAGCTTTAATTGGATACTTTGTCGAATTAAAGATTGTCACGTCAATTCGAGAACTAGATCGGGCATGTATGTAGAGAATTCATGTGATAGCTTAGAATTTTAGGCTTAGTTGATCGATTGATTTAACAATCCAAGGTAACTAACTCCATTGGTAGGCTGCCCAATCCACCACCCTGTAATCTGTATATTATAGGTCGAGCCATTTTCCCTTTTCATATAAACATACATATTTTTTAAAAAAGAAAACGAGTGATTGATCTACCCTTATTTATCTTCCTAAAAACTGCATGCCTCCTTTATGTTTATTGTTTGTTTAGATGCTGATGAAAGGATATATGTATATGTTTGGGTTAGAGATGGATTCAACATTTGAATGGATTCAATTTTTAAGATTTCCTGTATTGACTTGCTTGTTTCGAATTCTATTATTATGGTACTTATTTAGTGAATTTAAAACCCACATACTTCGAGCCAACTAAAGCTACTGGATTTGACTGGACCAATTAGTAATACATAGATCCACCACTGATTGTGATCTACATGAGGATTCTTTGACAATCAATTATTCGATAAAGAAGGAAAGCCTCTAAGAGTTTAACTGGTATGACTTTAAAGCAACATATGAGGTTACAATTGCGAGAAACGGAAGAGGGAAAACCTGGTAAAATTTCTCTAATTTTGGATCAATTTTGTTTGATTCTTTGTTGGTGGTACAAATCAAGTCAGTTGATCAACTGGTATAACATCTGCTAGGCAATGAAACCGCCCATATTTAAGTTGTGTTGTACTAGATTGCATCTTTTTTAGCTGTGGCAGCGTTTGGAATATTATGAAGGAGATTATTGAAAAGTGTAAAAGCCACACCCGAGATTTAGAACACGTGACCGAATGCAATTTTTGAGCGACATTTGCTACTACACTAGATACGATTCCAAATTTATTTATTTGACATAAGTTTTACCCTATTTGCACGATATTATCTTTTGATAGGTGATTCAGTTGACCCCTACTGAACTCTCCACATGCAAGTTGCATCCACCCCCACACCCTACTGACCGTGTCTTGATGTTTGCAAAATTCTCAGGGTGACAAAGGAAAACAGGGCAGCAGGAGTGCTGGATAATTTTTCAGAAGGGGAGAAATATTCAGAGCATGCTCTAAGGAAGTTTGTTCGAAACAAGTCTCCGGAGATTATGCCATCAATCAACGGCTTCTTCAGTAATCCAAACTAATGTCCTAGTCAAGTTTAATTTGGATTAACACCATTATTCTTTGTCTTCTTTTCCATTGAATGAGATAGACATGAAATGCATTTTTCTGGCCCTAAAAGATATTTGAAAGAAACTTGAATAAATGTAATCAGAACCACAAGTTCCCCTCTCTTTTGACAGGGCACATCTTTTCATATGATATTGAAC</genome_strand>
        <mrna_strand>TCAAAAAGATCGTAAAGTTTGCATGTTCTTTCCCCCGTTTTTCTATGGCTTCTTCCACCATTAATCGATGGCTGAAGCCTGAA............................................................................................................................................................................................GTGTATCCACTTTTTGCAGCCGTAAGCGTTGCTGTAGGGATCTGTGGAATGCAATTGGTTCGTAATATCTGCACCAACCCTGAAGTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGACAAAGGAAAACAGGGCAGCAGGAGTGCTGGATAATTTTTCAGAAGGGGAGAAATATTCAGAGCATGCTCTAAGGAAGTTTGTTCGAAACAAGTCTCCGGAGATTATGCCATCAATCAACGGCTTCTTCAGTAATCCAAACTAATGTCCTAGTCAAGTTTAATTTGGATTAACACCATTATTCTTTGTCTTCTTTTCCATTGAATGAGATAGACATGAAATGCATTTTTCTGGCCCTAAAAGATATTTGAAAGAAACTTGAATAAATGTAATCAGAACCACAAGTTCCCCTCTCTTTTGACAGGGCACATCTTTTCATATGATATTGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E293525" ref_strand="+" ref_description="SGN-E293525 [cLET-15-N16]">
      <seq>agtctcaaaaagatcgtaaagtttgcatgttctttcccccgtttttctatggcttcttccaccattaatcgatggctgaggcctgaggtgtatccactttttgcagccgtaggcgttgctgtagggatctgtggaatgcaattggttcgtaatatctgcaccaaccctgaagtcagggtgacaaaggaaaacagggcagcaggagtgctggataatttttcagaaggggagaaatattcagagcatgctctaaggaagtttgttcgaaacaagtctccggagattatgccatcaatcaacggcttcttcagtaatccaaactaatgtcctagtcaagtttaatttggattaacaccattattctttgtcttcttttccattgaatgagatagacatgaaatgcatttttctggccctaaaagatatttgaaagaaacttgaataaatgtaatcagaaccacaagttcccctctcttttgacagggcacatcttttcatatgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="135654" stop="133224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135354" g_stop="135268" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="135267" i_stop="135080" i_length="188">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="135079" g_stop="134991" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="176" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134990" i_stop="133852" i_length="1139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="133851" g_stop="133527" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="501" r_length="325" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="502" polyA_stop="521"/>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E293525" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135354" e_stop="135268"/>
          <exon e_start="135079" e_stop="134991"/>
          <exon e_start="133851" e_stop="133527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCTCAAAAAGATCGTAAAGTTTGCATGTTCTTTCCCCCGTTTTTCTATGGCTTCTTCCACCATTAATCGATGGCTGAGGCCTGAGGTATGTTTTATTCTTCCGCCATAGATCTCCTCCCTTCTATTTCCTTATTATAAAGATTTTTTAAAAACTTCCTATGATATCGGCGATTTTTAATGGATTATTGGGGGCTTTTCTTGTTTAAGGGTTGAATGTTGGTTTAGCGATTAGATCTGAGTGATTATATATCTTCTATATTTGTGGTGGCGCAGGTGTATCCACTTTTTGCAGCCGTAGGCGTTGCTGTAGGGATCTGTGGAATGCAATTGGTTCGTAATATCTGCACCAACCCTGAAGTCAGGTAACCTCTTCATATCCGTTTATGCCTTGTCTAATTTGTGTTAATTTGATTTAGCCAGCTTTAATTGGATACTTTGTCGAATTAAAGATTGTCACGTCAATTCGAGAACTAGATCGGGCATGTATGTAGAGAATTCATGTGATAGCTTAGAATTTTAGGCTTAGTTGATCGATTGATTTAACAATCCAAGGTAACTAACTCCATTGGTAGGCTGCCCAATCCACCACCCTGTAATCTGTATATTATAGGTCGAGCCATTTTCCCTTTTCATATAAACATACATATTTTTTAAAAAAGAAAACGAGTGATTGATCTACCCTTATTTATCTTCCTAAAAACTGCATGCCTCCTTTATGTTTATTGTTTGTTTAGATGCTGATGAAAGGATATATGTATATGTTTGGGTTAGAGATGGATTCAACATTTGAATGGATTCAATTTTTAAGATTTCCTGTATTGACTTGCTTGTTTCGAATTCTATTATTATGGTACTTATTTAGTGAATTTAAAACCCACATACTTCGAGCCAACTAAAGCTACTGGATTTGACTGGACCAATTAGTAATACATAGATCCACCACTGATTGTGATCTACATGAGGATTCTTTGACAATCAATTATTCGATAAAGAAGGAAAGCCTCTAAGAGTTTAACTGGTATGACTTTAAAGCAACATATGAGGTTACAATTGCGAGAAACGGAAGAGGGAAAACCTGGTAAAATTTCTCTAATTTTGGATCAATTTTGTTTGATTCTTTGTTGGTGGTACAAATCAAGTCAGTTGATCAACTGGTATAACATCTGCTAGGCAATGAAACCGCCCATATTTAAGTTGTGTTGTACTAGATTGCATCTTTTTTAGCTGTGGCAGCGTTTGGAATATTATGAAGGAGATTATTGAAAAGTGTAAAAGCCACACCCGAGATTTAGAACACGTGACCGAATGCAATTTTTGAGCGACATTTGCTACTACACTAGATACGATTCCAAATTTATTTATTTGACATAAGTTTTACCCTATTTGCACGATATTATCTTTTGATAGGTGATTCAGTTGACCCCTACTGAACTCTCCACATGCAAGTTGCATCCACCCCCACACCCTACTGACCGTGTCTTGATGTTTGCAAAATTCTCAGGGTGACAAAGGAAAACAGGGCAGCAGGAGTGCTGGATAATTTTTCAGAAGGGGAGAAATATTCAGAGCATGCTCTAAGGAAGTTTGTTCGAAACAAGTCTCCGGAGATTATGCCATCAATCAACGGCTTCTTCAGTAATCCAAACTAATGTCCTAGTCAAGTTTAATTTGGATTAACACCATTATTCTTTGTCTTCTTTTCCATTGAATGAGATAGACATGAAATGCATTTTTCTGGCCCTAAAAGATATTTGAAAGAAACTTGAATAAATGTAATCAGAACCACAAGTTCCCCTCTCTTTTGACAGGGCACATCTTTTCATATG</genome_strand>
        <mrna_strand>AGTCTCAAAAAGATCGTAAAGTTTGCATGTTCTTTCCCCCGTTTTTCTATGGCTTCTTCCACCATTAATCGATGGCTGAGGCCTGAG............................................................................................................................................................................................GTGTATCCACTTTTTGCAGCCGTAGGCGTTGCTGTAGGGATCTGTGGAATGCAATTGGTTCGTAATATCTGCACCAACCCTGAAGTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGACAAAGGAAAACAGGGCAGCAGGAGTGCTGGATAATTTTTCAGAAGGGGAGAAATATTCAGAGCATGCTCTAAGGAAGTTTGTTCGAAACAAGTCTCCGGAGATTATGCCATCAATCAACGGCTTCTTCAGTAATCCAAACTAATGTCCTAGTCAAGTTTAATTTGGATTAACACCATTATTCTTTGTCTTCTTTTCCATTGAATGAGATAGACATGAAATGCATTTTTCTGGCCCTAAAAGATATTTGAAAGAAACTTGAATAAATGTAATCAGAACCACAAGTTCCCCTCTCTTTTGACAGGGCACATCTTTTCATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E466528" ref_strand="+" ref_description="SGN-E466528 [cPRO-24-D2]">
      <seq>caacagtctcaaaaagatcgtaaagtttgcgtgttctttcccccgtttttctatggcttcttccaccattaatcgatggctgaggcccgaggtgtatccactttttgctgccgtaggcgttgcggtagggatctgtggaatgcaattggttcgtaatatctgcaccaaccctgaagtcagggtgacaaaggaaaacagggcagcaggagtgctggataatttttcagaaggggagaaatattcagagcatgctctaaggaagtttgttcgaaacaagtctccggagattatgccatcaatcaacggtttcttcagcgatccaaactaatgccctagtcaagtttaatatggattataacatcattattctttgtcctcttcttttccattgaatgagatagacatgaaatgcatttttctggcctgcgatgggcctaaaagatattgaaagaaacttgaataaatgtaatcagaaccacaagttcctcccttttgacagggcacatcttttcatatacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="135658" stop="133224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135358" g_stop="135268" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="135267" i_stop="135080" i_length="188">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="135079" g_stop="134991" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="180" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134990" i_stop="133852" i_length="1139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="133851" g_stop="133530" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="514" r_length="334" r_score="0.876"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="519" polyA_stop="528"/>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E466528" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E466528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135358" e_stop="135268"/>
          <exon e_start="135079" e_stop="134991"/>
          <exon e_start="133851" e_stop="133530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAGTCTCAAAAAGATCGTAAAGTTTGCATGTTCTTTCCCCCGTTTTTCTATGGCTTCTTCCACCATTAATCGATGGCTGAGGCCTGAGGTATGTTTTATTCTTCCGCCATAGATCTCCTCCCTTCTATTTCCTTATTATAAAGATTTTTTAAAAACTTCCTATGATATCGGCGATTTTTAATGGATTATTGGGGGCTTTTCTTGTTTAAGGGTTGAATGTTGGTTTAGCGATTAGATCTGAGTGATTATATATCTTCTATATTTGTGGTGGCGCAGGTGTATCCACTTTTTGCAGCCGTAGGCGTTGCTGTAGGGATCTGTGGAATGCAATTGGTTCGTAATATCTGCACCAACCCTGAAGTCAGGTAACCTCTTCATATCCGTTTATGCCTTGTCTAATTTGTGTTAATTTGATTTAGCCAGCTTTAATTGGATACTTTGTCGAATTAAAGATTGTCACGTCAATTCGAGAACTAGATCGGGCATGTATGTAGAGAATTCATGTGATAGCTTAGAATTTTAGGCTTAGTTGATCGATTGATTTAACAATCCAAGGTAACTAACTCCATTGGTAGGCTGCCCAATCCACCACCCTGTAATCTGTATATTATAGGTCGAGCCATTTTCCCTTTTCATATAAACATACATATTTTTTAAAAAAGAAAACGAGTGATTGATCTACCCTTATTTATCTTCCTAAAAACTGCATGCCTCCTTTATGTTTATTGTTTGTTTAGATGCTGATGAAAGGATATATGTATATGTTTGGGTTAGAGATGGATTCAACATTTGAATGGATTCAATTTTTAAGATTTCCTGTATTGACTTGCTTGTTTCGAATTCTATTATTATGGTACTTATTTAGTGAATTTAAAACCCACATACTTCGAGCCAACTAAAGCTACTGGATTTGACTGGACCAATTAGTAATACATAGATCCACCACTGATTGTGATCTACATGAGGATTCTTTGACAATCAATTATTCGATAAAGAAGGAAAGCCTCTAAGAGTTTAACTGGTATGACTTTAAAGCAACATATGAGGTTACAATTGCGAGAAACGGAAGAGGGAAAACCTGGTAAAATTTCTCTAATTTTGGATCAATTTTGTTTGATTCTTTGTTGGTGGTACAAATCAAGTCAGTTGATCAACTGGTATAACATCTGCTAGGCAATGAAACCGCCCATATTTAAGTTGTGTTGTACTAGATTGCATCTTTTTTAGCTGTGGCAGCGTTTGGAATATTATGAAGGAGATTATTGAAAAGTGTAAAAGCCACACCCGAGATTTAGAACACGTGACCGAATGCAATTTTTGAGCGACATTTGCTACTACACTAGATACGATTCCAAATTTATTTATTTGACATAAGTTTTACCCTATTTGCACGATATTATCTTTTGATAGGTGATTCAGTTGACCCCTACTGAACTCTCCACATGCAAGTTGCATCCACCCCCACACCCTACTGACCGTGTCTTGATGTTTGCAAAATTCTCAGGGTGACAAAGGAAAACAGGGCAGCAGGAGTGCTGGATAATTTTTCAGAAGGGGAGAAATATTCAGAGCATGCTCTAAGGAAGTTTGTTCGAAACAAGTCTCCGGAGATTATGCCATCAATCAACGGCTTCTTCAGTAATCCAAACTAATGTCCTAGTCAAGTTTAATTTGGA-T-TAACACCATTATTCTTTG---TCTTCTTTTCCATTGAATGAGATAGACATGAAATGCATTTTTCT-G---GC------CCTAAAAGATATTTGAAAGAAACTTGAATAAATGTAATCAGAACCACAAGTTCCCCTCTCTTTTGACAGGGCACATCTTTTCAT</genome_strand>
        <mrna_strand>CAACAGTCTCAAAAAGATCGTAAAGTTTGCGTGTTCTTTCCCCCGTTTTTCTATGGCTTCTTCCACCATTAATCGATGGCTGAGGCCCGAG............................................................................................................................................................................................GTGTATCCACTTTTTGCTGCCGTAGGCGTTGCGGTAGGGATCTGTGGAATGCAATTGGTTCGTAATATCTGCACCAACCCTGAAGTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGACAAAGGAAAACAGGGCAGCAGGAGTGCTGGATAATTTTTCAGAAGGGGAGAAATATTCAGAGCATGCTCTAAGGAAGTTTGTTCGAAACAAGTCTCCGGAGATTATGCCATCAATCAACGGTTTCTTCAGCGATCCAAACTAATGCCCTAGTCAAGTTTAATATGGATTATAACATCATTATTCTTTGTCCTCTTCTTTTCCATTGAATGAGATAGACATGAAATGCATTTTTCTGGCCTGCGATGGGCCTAAAAGATA-TTGAAAGAAACTTGAATAAATGTAATCAGAACCACAAGTT--CCTCCCTTTTGACAGGGCACATCTTTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E282441" ref_strand="+" ref_description="SGN-E282441 [cLER-18-A19]">
      <seq>aaaaagatcgtaaagtttgcatgttctttcccccgtttttctatggcttcttccaccattaatcgatggctgaggcctgaggtgtatccactttttgcagccgtaggcgttgctgtagggatctgtggaatgcaattggttcgtaatatctgcaccaaccctgaagtcagggtgacaaaggaaaacagggcagcaggagtgctggataatttttcagaaggggagaaatattcagagcatgctctaaggaagtttgttcgaaacaagtctccggagattatgccatcaatcaacggcttcttcagtaatccaaactaatgtcctagtcaagtttaatttggattaacaccattattctttgtcttcttttccattgaatgagatagacatgaaatgcatttttctggccctaaaagatatttgaaagaaacttgaataaatgtaatcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="-" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="135648" stop="133273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135348" g_stop="135268" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="135267" i_stop="135080" i_length="188">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="135079" g_stop="134991" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="170" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134990" i_stop="133852" i_length="1139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="133851" g_stop="133573" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="449" r_length="279" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="-" ref_id="SGN-E282441" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135348" e_stop="135268"/>
          <exon e_start="135079" e_stop="134991"/>
          <exon e_start="133851" e_stop="133573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGATCGTAAAGTTTGCATGTTCTTTCCCCCGTTTTTCTATGGCTTCTTCCACCATTAATCGATGGCTGAGGCCTGAGGTATGTTTTATTCTTCCGCCATAGATCTCCTCCCTTCTATTTCCTTATTATAAAGATTTTTTAAAAACTTCCTATGATATCGGCGATTTTTAATGGATTATTGGGGGCTTTTCTTGTTTAAGGGTTGAATGTTGGTTTAGCGATTAGATCTGAGTGATTATATATCTTCTATATTTGTGGTGGCGCAGGTGTATCCACTTTTTGCAGCCGTAGGCGTTGCTGTAGGGATCTGTGGAATGCAATTGGTTCGTAATATCTGCACCAACCCTGAAGTCAGGTAACCTCTTCATATCCGTTTATGCCTTGTCTAATTTGTGTTAATTTGATTTAGCCAGCTTTAATTGGATACTTTGTCGAATTAAAGATTGTCACGTCAATTCGAGAACTAGATCGGGCATGTATGTAGAGAATTCATGTGATAGCTTAGAATTTTAGGCTTAGTTGATCGATTGATTTAACAATCCAAGGTAACTAACTCCATTGGTAGGCTGCCCAATCCACCACCCTGTAATCTGTATATTATAGGTCGAGCCATTTTCCCTTTTCATATAAACATACATATTTTTTAAAAAAGAAAACGAGTGATTGATCTACCCTTATTTATCTTCCTAAAAACTGCATGCCTCCTTTATGTTTATTGTTTGTTTAGATGCTGATGAAAGGATATATGTATATGTTTGGGTTAGAGATGGATTCAACATTTGAATGGATTCAATTTTTAAGATTTCCTGTATTGACTTGCTTGTTTCGAATTCTATTATTATGGTACTTATTTAGTGAATTTAAAACCCACATACTTCGAGCCAACTAAAGCTACTGGATTTGACTGGACCAATTAGTAATACATAGATCCACCACTGATTGTGATCTACATGAGGATTCTTTGACAATCAATTATTCGATAAAGAAGGAAAGCCTCTAAGAGTTTAACTGGTATGACTTTAAAGCAACATATGAGGTTACAATTGCGAGAAACGGAAGAGGGAAAACCTGGTAAAATTTCTCTAATTTTGGATCAATTTTGTTTGATTCTTTGTTGGTGGTACAAATCAAGTCAGTTGATCAACTGGTATAACATCTGCTAGGCAATGAAACCGCCCATATTTAAGTTGTGTTGTACTAGATTGCATCTTTTTTAGCTGTGGCAGCGTTTGGAATATTATGAAGGAGATTATTGAAAAGTGTAAAAGCCACACCCGAGATTTAGAACACGTGACCGAATGCAATTTTTGAGCGACATTTGCTACTACACTAGATACGATTCCAAATTTATTTATTTGACATAAGTTTTACCCTATTTGCACGATATTATCTTTTGATAGGTGATTCAGTTGACCCCTACTGAACTCTCCACATGCAAGTTGCATCCACCCCCACACCCTACTGACCGTGTCTTGATGTTTGCAAAATTCTCAGGGTGACAAAGGAAAACAGGGCAGCAGGAGTGCTGGATAATTTTTCAGAAGGGGAGAAATATTCAGAGCATGCTCTAAGGAAGTTTGTTCGAAACAAGTCTCCGGAGATTATGCCATCAATCAACGGCTTCTTCAGTAATCCAAACTAATGTCCTAGTCAAGTTTAATTTGGATTAACACCATTATTCTTTGTCTTCTTTTCCATTGAATGAGATAGACATGAAATGCATTTTTCTGGCCCTAAAAGATATTTGAAAGAAACTTGAATAAATGTAATCAG</genome_strand>
        <mrna_strand>AAAAAGATCGTAAAGTTTGCATGTTCTTTCCCCCGTTTTTCTATGGCTTCTTCCACCATTAATCGATGGCTGAGGCCTGAG............................................................................................................................................................................................GTGTATCCACTTTTTGCAGCCGTAGGCGTTGCTGTAGGGATCTGTGGAATGCAATTGGTTCGTAATATCTGCACCAACCCTGAAGTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGACAAAGGAAAACAGGGCAGCAGGAGTGCTGGATAATTTTTCAGAAGGGGAGAAATATTCAGAGCATGCTCTAAGGAAGTTTGTTCGAAACAAGTCTCCGGAGATTATGCCATCAATCAACGGCTTCTTCAGTAATCCAAACTAATGTCCTAGTCAAGTTTAATTTGGATTAACACCATTATTCTTTGTCTTCTTTTCCATTGAATGAGATAGACATGAAATGCATTTTTCTGGCCCTAAAAGATATTTGAAAGAAACTTGAATAAATGTAATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E699945" ref_strand="+" ref_description="SGN-E699945 [FA11CF11]">
      <seq>gatgatatgaaagatgagggggagagagaatcgaagggagacgtgagaaattcgccggaggcatcgcaagccacacaataaactagacgaaggagaaaagaagaagaagaatctccgtctttaatggctgccgcctcagctagggttttactcgcatctcgtctagcagacctatcacttaagcctcatcaacatcctcctcacctaccctctccttttacccaccacctcctcatccgtcccttacttccttctctttccgcttccaccaggcggcgtacgtccgttaactgccttatttccggcgtagacggcggcggtgtttcggacgactttgtttccaccaggaaatccggtttcggcagtgaattctctgttattgccaatatgctcaagcgaattgaaccgttggacacttctgttatatctaaaggcgtttctgattcagctaaggactcaatgaagcagaccatttctactatgttaggcttgctcccttcagatcaattctcaatcactgttcggttttccaaacacgctctcgatcgcctcattgtttcttctatcattaccgggtatacgttgtggaatgcggagtacaggatatccttgatgaggaattttgatatcccatcagataatttgaaaggcttcaactcaacggaagaggatgtgaactctggctcaaagagcgaggggatagagggggggagaacgcggagttggtgtaaatatgtcttccgcgggttcagagaaaatggatattccagctcttgggaatttatctccggaagctctgaaatatgttcaacaattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="139706" stop="141245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140006" g_stop="140580" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="140581" i_stop="140704" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="140705" g_stop="140946" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="818" r_length="243" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E699945" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140006" e_stop="140580"/>
          <exon e_start="140705" e_stop="140946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGAAATGAAAGATGAGGGGGAGAGAGAATCGAAGGGAGACGTGAGAAATTCGCCGGAGGCATCGCAAGCCACACAATAAACTAGACGAAGGAGAAAAGAAGAAGAAGAATCTCCGTCTTTAATGGCTGCCGCCTCAGCTAGGGTTTTACTCGCATCTCGTCTAGCAGACCTATCACTTAAGCCTCATCAACATCCTCCTCACCTACCCTCTCCTTTTACCCACCACCTCCTCATCCGTCCCTTACTTCCTTCTCTTTCCGCTTCCACCAGGCGGCGTACGTCCGTTAACTGCCTTATTTCCGGCGTAGACGGCGGCGGTGTTTCGGACGACTTTGTTTCCACCAGGAAATCCGGTTTCGGCAGTGAATTCTCTGTTATTGCCAATATGCTCAAGCGAATTGAACCGTTGGACACTTCTGTTATATCTAAAGGCGTTTCTGATTCAGCTAAGGACTCAATGAAGCAGACCATTTCTACTATGTTAGGCTTGCTCCCTTCAGATCAATTCTCAATCACTGTTCGGTTTTCCAAACACGCTCTCGATCGCCTCATTGTTTCTTCTATCATTACCGGGTACCTTATCTCTTCATTTTCATATATGCACAAAGTTGAAAATAGTGATTGTTAATTTGTTAAAGTTGTGGATCAATCTGAATAAGTTATGGTGTATTCGATTGGTGTTGATTTGTGGTGGTAGGTATACGTTGTGGAATGCGGAGTACAGGATATCCTTGATGAGGAATTTTGATATCCCATCAGATAATTTGAAAGGCTTCAACTCAACGGAAGAGGATGTGAACTCTGGCTCAAAGAGCGAGGGGATAGA-GGGGGGAGAACGCGGAGTTGGTGTAAATATGTCTTCGGCGGTTTCAGAGAAAATGGATATTCAAGCTCTTGGGAATTTATCTCCGGAAGCTCTGAAATATGTTCAACAATTAG</genome_strand>
        <mrna_strand>GATGATATGAAAGATGAGGGGGAGAGAGAATCGAAGGGAGACGTGAGAAATTCGCCGGAGGCATCGCAAGCCACACAATAAACTAGACGAAGGAGAAAAGAAGAAGAAGAATCTCCGTCTTTAATGGCTGCCGCCTCAGCTAGGGTTTTACTCGCATCTCGTCTAGCAGACCTATCACTTAAGCCTCATCAACATCCTCCTCACCTACCCTCTCCTTTTACCCACCACCTCCTCATCCGTCCCTTACTTCCTTCTCTTTCCGCTTCCACCAGGCGGCGTACGTCCGTTAACTGCCTTATTTCCGGCGTAGACGGCGGCGGTGTTTCGGACGACTTTGTTTCCACCAGGAAATCCGGTTTCGGCAGTGAATTCTCTGTTATTGCCAATATGCTCAAGCGAATTGAACCGTTGGACACTTCTGTTATATCTAAAGGCGTTTCTGATTCAGCTAAGGACTCAATGAAGCAGACCATTTCTACTATGTTAGGCTTGCTCCCTTCAGATCAATTCTCAATCACTGTTCGGTTTTCCAAACACGCTCTCGATCGCCTCATTGTTTCTTCTATCATTACCGG............................................................................................................................GTATACGTTGTGGAATGCGGAGTACAGGATATCCTTGATGAGGAATTTTGATATCCCATCAGATAATTTGAAAGGCTTCAACTCAACGGAAGAGGATGTGAACTCTGGCTCAAAGAGCGAGGGGATAGAGGGGGGGAGAACGCGGAGTTGGTGTAAATATGTCTTCCGCGGGTTCAGAGAAAATGGATATTCCAGCTCTTGGGAATTTATCTCCGGAAGCTCTGAAATATGTTCAACAATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E719712" ref_strand="+" ref_description="SGN-E719712 [FC08CG01]">
      <seq>gggcgattggcggccaatcggccgaattggaaagatgagggggacagtgaatcgaagggagacgtgagaaattcgccggaggcatcgcaagccacacaataaactagacgaaggagaaaagaagaagaagaatctccgtctttaatggctgccgcctcagctagggttttactcgcatctcgtctagcaaacctatcacttaagcctcatcaacatcctcctcacctaccctctccttttacccaccacctcctcatccgtcccttacttccttctctttccgcttccaccaggcggcgtacgtccgttaactgccttatttccggcgtaaacggcggcggtgtttcggacgactttgtttccaccaggaaatccggtttcggcagtgaattctctgttattgccaatatgctcaagcgaattgaaccgttggacacttctgttatatctaaaggcgtttctgattcagctaaggactcaatgaagcagaccatttctactatgttaggcttgctcccttcagatcaattctcaatcactgttcggttttccaaacacgctctcgatcgcctcattgtttcttctatcattaccgggtatacgttgtggaatgcggagtacaggatatccttgatgaggaattttgatatcccatcagataatttgaaaggcttcaactcaacggaagaggatgtgaactctggctcaaagagcgaggggatagaggggggagaacgcggagttggtgtaaatatgtcttcggcggtttcagagaaaatggatattcaagctcttgggaatttatctccggaagctctgaaatatgttcaacaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="139703" stop="141244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140014" g_stop="140580" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="596" r_length="567" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="140581" i_stop="140704" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="140705" g_stop="140944" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="836" r_length="240" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E719712" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719712" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140014" e_stop="140580"/>
          <exon e_start="140705" e_stop="140944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGATGAGGGGGAGAGAGAATCGAAGGGAGACGTGAGAAATTCGCCGGAGGCATCGCAAGCCACACAATAAACTAGACGAAGGAGAAAAGAAGAAGAAGAATCTCCGTCTTTAATGGCTGCCGCCTCAGCTAGGGTTTTACTCGCATCTCGTCTAGCAGACCTATCACTTAAGCCTCATCAACATCCTCCTCACCTACCCTCTCCTTTTACCCACCACCTCCTCATCCGTCCCTTACTTCCTTCTCTTTCCGCTTCCACCAGGCGGCGTACGTCCGTTAACTGCCTTATTTCCGGCGTAGACGGCGGCGGTGTTTCGGACGACTTTGTTTCCACCAGGAAATCCGGTTTCGGCAGTGAATTCTCTGTTATTGCCAATATGCTCAAGCGAATTGAACCGTTGGACACTTCTGTTATATCTAAAGGCGTTTCTGATTCAGCTAAGGACTCAATGAAGCAGACCATTTCTACTATGTTAGGCTTGCTCCCTTCAGATCAATTCTCAATCACTGTTCGGTTTTCCAAACACGCTCTCGATCGCCTCATTGTTTCTTCTATCATTACCGGGTACCTTATCTCTTCATTTTCATATATGCACAAAGTTGAAAATAGTGATTGTTAATTTGTTAAAGTTGTGGATCAATCTGAATAAGTTATGGTGTATTCGATTGGTGTTGATTTGTGGTGGTAGGTATACGTTGTGGAATGCGGAGTACAGGATATCCTTGATGAGGAATTTTGATATCCCATCAGATAATTTGAAAGGCTTCAACTCAACGGAAGAGGATGTGAACTCTGGCTCAAAGAGCGAGGGGATAGAGGGGGGAGAACGCGGAGTTGGTGTAAATATGTCTTCGGCGGTTTCAGAGAAAATGGATATTCAAGCTCTTGGGAATTTATCTCCGGAAGCTCTGAAATATGTTCAACAATT</genome_strand>
        <mrna_strand>GAAAGATGAGGGGGACAGTGAATCGAAGGGAGACGTGAGAAATTCGCCGGAGGCATCGCAAGCCACACAATAAACTAGACGAAGGAGAAAAGAAGAAGAAGAATCTCCGTCTTTAATGGCTGCCGCCTCAGCTAGGGTTTTACTCGCATCTCGTCTAGCAAACCTATCACTTAAGCCTCATCAACATCCTCCTCACCTACCCTCTCCTTTTACCCACCACCTCCTCATCCGTCCCTTACTTCCTTCTCTTTCCGCTTCCACCAGGCGGCGTACGTCCGTTAACTGCCTTATTTCCGGCGTAAACGGCGGCGGTGTTTCGGACGACTTTGTTTCCACCAGGAAATCCGGTTTCGGCAGTGAATTCTCTGTTATTGCCAATATGCTCAAGCGAATTGAACCGTTGGACACTTCTGTTATATCTAAAGGCGTTTCTGATTCAGCTAAGGACTCAATGAAGCAGACCATTTCTACTATGTTAGGCTTGCTCCCTTCAGATCAATTCTCAATCACTGTTCGGTTTTCCAAACACGCTCTCGATCGCCTCATTGTTTCTTCTATCATTACCGG............................................................................................................................GTATACGTTGTGGAATGCGGAGTACAGGATATCCTTGATGAGGAATTTTGATATCCCATCAGATAATTTGAAAGGCTTCAACTCAACGGAAGAGGATGTGAACTCTGGCTCAAAGAGCGAGGGGATAGAGGGGGGAGAACGCGGAGTTGGTGTAAATATGTCTTCGGCGGTTTCAGAGAAAATGGATATTCAAGCTCTTGGGAATTTATCTCCGGAAGCTCTGAAATATGTTCAACAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E304939" ref_strand="+" ref_description="SGN-E304939 [cLEX-10-J1]">
      <seq>gagagagaatcgaagggagacgtgagaaattcgccggaggcatcgcaagccacacaataaactagacgaaggagaaaagaagaagaagaatctccgtctttaatggctgccgcctcaactagggttttactcgcatctcgtctagcagacctatcacttaagcctcatcaacatcctcctcacctaccctctccttttacccaccacctcctcatacgtgccttactttcttctctttccgcttccaccaggcggggtacgtccgttaactgccttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="139727" stop="140605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140027" g_stop="140305" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E304939" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>279</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140027" e_stop="140305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGAGAATCGAAGGGAGACGTGAGAAATTCGCCGGAGGCATCGCAAGCCACACAATAAACTAGACGAAGGAGAAAAGAAGAAGAAGAATCTCCGTCTTTAATGGCTGCCGCCTCAGCTAGGGTTTTACTCGCATCTCGTCTAGCAGACCTATCACTTAAGCCTCATCAACATCCTCCTCACCTACCCTCTCCTTTTACCCACCACCTCCTCATCCGTCCCTTACTTCCTTCTCTTTCCGCTTCCACCAGGCGGCGTACGTCCGTTAACTGCCTTATT</genome_strand>
        <mrna_strand>GAGAGAGAATCGAAGGGAGACGTGAGAAATTCGCCGGAGGCATCGCAAGCCACACAATAAACTAGACGAAGGAGAAAAGAAGAAGAAGAATCTCCGTCTTTAATGGCTGCCGCCTCAACTAGGGTTTTACTCGCATCTCGTCTAGCAGACCTATCACTTAAGCCTCATCAACATCCTCCTCACCTACCCTCTCCTTTTACCCACCACCTCCTCATACGTGCCTTACTTTCTTCTCTTTCCGCTTCCACCAGGCGGGGTACGTCCGTTAACTGCCTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E584283" ref_strand="+" ref_description="SGN-E584283 [10106]">
      <seq>agagaatcgaaggaagacgtgagaacttcgccggaggcatcgcaagccacacaatagaatagacgaaggagaaagaagaagaagaagaatctccgtctttaatggctgccgcctcagctagggttttactcgcatctcgtctagcagacctctcacttaagcctcatcaacatcctcctcacctaccccctccttttacccaccatctcctcatccgtcccttgcttccttctctttccgcttccaccaggcggcgtacgtccgttaactgccttatttccggcgtagacggcggcggtgtttcggacgactttgtttccaccaggaagtccggtttcggcagtgaattctctgttattgccaatatgctcaagcgaattgaaccgttggacacttctgttatatctaaaggcgtttctgattctgctaaggactcaatgaagcagacgatttctactatgttaggcttgctcccttcagatcaattctcaggtgactgttcggtttttccaaacacgctctcgatcgcctcattgtttccttcctattattaccgggtatacgttgttggaaatgccggagtacaggatatccttgatgaggaattttgatatccatccgataattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="139730" stop="141073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140030" g_stop="140580" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="557" r_length="557" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="140581" i_stop="140704" i_length="124">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="140705" g_stop="140773" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="628" r_length="71" r_score="0.884"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E584283" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E584283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140030" e_stop="140580"/>
          <exon e_start="140705" e_stop="140773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAATCGAAGGGAGACGTGAGAAATTCGCCGGAGGCATCGCAAGCCACACAATAAACTAGACGAAGGAG-AA-AAGAAGAAGAAGAATCTCCGTCTTTAATGGCTGCCGCCTCAGCTAGGGTTTTACTCGCATCTCGTCTAGCAGACCTATCACTTAAGCCTCATCAACATCCTCCTCACCTACCCTCTCCTTTTACCCACCACCTCCTCATCCGTCCCTTACTTCCTTCTCTTTCCGCTTCCACCAGGCGGCGTACGTCCGTTAACTGCCTTATTTCCGGCGTAGACGGCGGCGGTGTTTCGGACGACTTTGTTTCCACCAGGAAATCCGGTTTCGGCAGTGAATTCTCTGTTATTGCCAATATGCTCAAGCGAATTGAACCGTTGGACACTTCTGTTATATCTAAAGGCGTTTCTGATTCAGCTAAGGACTCAATGAAGCAGACCATTTCTACTATGTTAGGCTTGCTCCCTTCAGATCAATTCTCA-ATCACTGTTCGG-TTTTCCAAACACGCTCTCGATCGCCTCATTGTTT-CTT-CTATCATTACCGGGTACCTTATCTCTTCATTTTCATATATGCACAAAGTTGAAAATAGTGATTGTTAATTTGTTAAAGTTGTGGATCAATCTGAATAAGTTATGGTGTATTCGATTGGTGTTGATTTGTGGTGGTAGGTATACGTTG-TGG-AATG-CGGAGTACAGGATATCCTTGATGAGGAATTTTGATATCCCATCAGATAATTT</genome_strand>
        <mrna_strand>AGAGAATCGAAGGAAGACGTGAGAACTTCGCCGGAGGCATCGCAAGCCACACAATAGAATAGACGAAGGAGAAAGAAGAAGAAGAAGAATCTCCGTCTTTAATGGCTGCCGCCTCAGCTAGGGTTTTACTCGCATCTCGTCTAGCAGACCTCTCACTTAAGCCTCATCAACATCCTCCTCACCTACCCCCTCCTTTTACCCACCATCTCCTCATCCGTCCCTTGCTTCCTTCTCTTTCCGCTTCCACCAGGCGGCGTACGTCCGTTAACTGCCTTATTTCCGGCGTAGACGGCGGCGGTGTTTCGGACGACTTTGTTTCCACCAGGAAGTCCGGTTTCGGCAGTGAATTCTCTGTTATTGCCAATATGCTCAAGCGAATTGAACCGTTGGACACTTCTGTTATATCTAAAGGCGTTTCTGATTCTGCTAAGGACTCAATGAAGCAGACGATTTCTACTATGTTAGGCTTGCTCCCTTCAGATCAATTCTCAGGTGACTGTTCGGTTTTTCCAAACACGCTCTCGATCGCCTCATTGTTTCCTTCCTATTATTACCGG............................................................................................................................GTATACGTTGTTGGAAATGCCGGAGTACAGGATATCCTTGATGAGGAATTTTGATAT-CCATCCGATAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E562048" ref_strand="+" ref_description="SGN-E562048 [488]">
      <seq>agagaatcgaaggaagacgtgagaacttcgccggaggcatcgcaagccacacaataaaatagacgaaggagaaagaagaagaagaagaatctccgtctttaatggctgccgcctcagctagggttttactcgcatctcgtctagcagacctctcacttaagcctcatcaacatcctcctcacctaccccctccttttacccaccatctcctcatccgtcccttgcttccttctctttccgcttccaccaggcggcgtacgtccgttaactgccttatttccggcgtagacggcggcggtgtttcggacgactttgtttccaccaggaagtccggtttcggcagtgaattctctgttattgccaatatgctcaagcgaattgaaccgttggacacttctgttatatctaaaggcgtttctgattctgctaaggactcaatgaagcagacgatttctactatgttaggcttgctcccttcagatcaattctcagtgactgttcggttttccaaacacgctctcgattcggctcattgtttcttctattattaaccgggtatacgttgtggaatgcgggagtacaggattatcttgatgaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="139730" stop="141049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140030" g_stop="140580" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="140581" i_stop="140704" i_length="124">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.999" a_score="0.89"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="140705" g_stop="140749" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="601" r_length="46" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E562048" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E562048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140030" e_stop="140580"/>
          <exon e_start="140705" e_stop="140749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAATCGAAGGGAGACGTGAGAAATTCGCCGGAGGCATCGCAAGCCACACAATAAACTAGACGAAGGAG-AA-AAGAAGAAGAAGAATCTCCGTCTTTAATGGCTGCCGCCTCAGCTAGGGTTTTACTCGCATCTCGTCTAGCAGACCTATCACTTAAGCCTCATCAACATCCTCCTCACCTACCCTCTCCTTTTACCCACCACCTCCTCATCCGTCCCTTACTTCCTTCTCTTTCCGCTTCCACCAGGCGGCGTACGTCCGTTAACTGCCTTATTTCCGGCGTAGACGGCGGCGGTGTTTCGGACGACTTTGTTTCCACCAGGAAATCCGGTTTCGGCAGTGAATTCTCTGTTATTGCCAATATGCTCAAGCGAATTGAACCGTTGGACACTTCTGTTATATCTAAAGGCGTTTCTGATTCAGCTAAGGACTCAATGAAGCAGACCATTTCTACTATGTTAGGCTTGCTCCCTTCAGATCAATTCTCAATCACTGTTCGGTTTTCCAAACACGCTCTCGA-TCGCCTCATTGTTTCTTCTATCATT-ACCGGGTACCTTATCTCTTCATTTTCATATATGCACAAAGTTGAAAATAGTGATTGTTAATTTGTTAAAGTTGTGGATCAATCTGAATAAGTTATGGTGTATTCGATTGGTGTTGATTTGTGGTGGTAGGTATACGTTGTGGAATGC-GGAGTACAGGATATCCTTGATGAGGAA</genome_strand>
        <mrna_strand>AGAGAATCGAAGGAAGACGTGAGAACTTCGCCGGAGGCATCGCAAGCCACACAATAAAATAGACGAAGGAGAAAGAAGAAGAAGAAGAATCTCCGTCTTTAATGGCTGCCGCCTCAGCTAGGGTTTTACTCGCATCTCGTCTAGCAGACCTCTCACTTAAGCCTCATCAACATCCTCCTCACCTACCCCCTCCTTTTACCCACCATCTCCTCATCCGTCCCTTGCTTCCTTCTCTTTCCGCTTCCACCAGGCGGCGTACGTCCGTTAACTGCCTTATTTCCGGCGTAGACGGCGGCGGTGTTTCGGACGACTTTGTTTCCACCAGGAAGTCCGGTTTCGGCAGTGAATTCTCTGTTATTGCCAATATGCTCAAGCGAATTGAACCGTTGGACACTTCTGTTATATCTAAAGGCGTTTCTGATTCTGCTAAGGACTCAATGAAGCAGACGATTTCTACTATGTTAGGCTTGCTCCCTTCAGATCAATTCTCAGTGACTGTTCGGTTTTCCAAACACGCTCTCGATTCGGCTCATTGTTTCTTCTATTATTAACCGG............................................................................................................................GTATACGTTGTGGAATGCGGGAGTACAGGATTATCTTGATGAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E462074" ref_strand="+" ref_description="SGN-E462074 [cPRO-10-D11]">
      <seq>gagaatcgaaggaagacgtgagaacttcgccggaggcatcgcaagccacacaataaaatagacgaaggagaaagaagaagaagaagaatctccgtctttaatggctgccgcctcagctagggttttactcgcatctcgtctagcagacctctcacttaagcctcatcaacatcctcctcacctaccccctccttttacccaccatctcctcatccgtcccttgcttccttctctttccgcttccaccaggcggcgtacgtccgttaactgccttatttccggcgtagacggcggcggtgtttcggacgactttgtttccaccaggaagtccggtttcggcagtgaattctctgttattgccaatatgctcaagcgaattgaaccgttggacacttctgttatatctaaaggcgtttctgattctgctaaggactcaatgaagcagacgatttctactatgttaggcttgctcccttcagatcaattctcagtgactgttcggttttccaaacacgctctcgatcgcctcattgtttcttctattattaccgggtatacgttgtggaatgcggagtacaggatatccttgatgaggaattttgatatcccatccgataatttgaaaggcttcaactcatcnggaggaagatgtgaactcaggctcaaagagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="139731" stop="141122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140031" g_stop="140580" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="552" r_length="552" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="140581" i_stop="140704" i_length="124">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="140705" g_stop="140823" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="672" r_length="120" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E462074" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E462074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140031" e_stop="140580"/>
          <exon e_start="140705" e_stop="140823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATCGAAGGGAGACGTGAGAAATTCGCCGGAGGCATCGCAAGCCACACAATAAACTAGACGAAGGAG-AA-AAGAAGAAGAAGAATCTCCGTCTTTAATGGCTGCCGCCTCAGCTAGGGTTTTACTCGCATCTCGTCTAGCAGACCTATCACTTAAGCCTCATCAACATCCTCCTCACCTACCCTCTCCTTTTACCCACCACCTCCTCATCCGTCCCTTACTTCCTTCTCTTTCCGCTTCCACCAGGCGGCGTACGTCCGTTAACTGCCTTATTTCCGGCGTAGACGGCGGCGGTGTTTCGGACGACTTTGTTTCCACCAGGAAATCCGGTTTCGGCAGTGAATTCTCTGTTATTGCCAATATGCTCAAGCGAATTGAACCGTTGGACACTTCTGTTATATCTAAAGGCGTTTCTGATTCAGCTAAGGACTCAATGAAGCAGACCATTTCTACTATGTTAGGCTTGCTCCCTTCAGATCAATTCTCAATCACTGTTCGGTTTTCCAAACACGCTCTCGATCGCCTCATTGTTTCTTCTATCATTACCGGGTACCTTATCTCTTCATTTTCATATATGCACAAAGTTGAAAATAGTGATTGTTAATTTGTTAAAGTTGTGGATCAATCTGAATAAGTTATGGTGTATTCGATTGGTGTTGATTTGTGGTGGTAGGTATACGTTGTGGAATGCGGAGTACAGGATATCCTTGATGAGGAATTTTGATATCCCATCAGATAATTTGAAAGGCTTCAACTCAAC-GGAAGAGGATGTGAACTCTGGCTCAAAGAGCG</genome_strand>
        <mrna_strand>GAGAATCGAAGGAAGACGTGAGAACTTCGCCGGAGGCATCGCAAGCCACACAATAAAATAGACGAAGGAGAAAGAAGAAGAAGAAGAATCTCCGTCTTTAATGGCTGCCGCCTCAGCTAGGGTTTTACTCGCATCTCGTCTAGCAGACCTCTCACTTAAGCCTCATCAACATCCTCCTCACCTACCCCCTCCTTTTACCCACCATCTCCTCATCCGTCCCTTGCTTCCTTCTCTTTCCGCTTCCACCAGGCGGCGTACGTCCGTTAACTGCCTTATTTCCGGCGTAGACGGCGGCGGTGTTTCGGACGACTTTGTTTCCACCAGGAAGTCCGGTTTCGGCAGTGAATTCTCTGTTATTGCCAATATGCTCAAGCGAATTGAACCGTTGGACACTTCTGTTATATCTAAAGGCGTTTCTGATTCTGCTAAGGACTCAATGAAGCAGACGATTTCTACTATGTTAGGCTTGCTCCCTTCAGATCAATTCTCAGTGACTGTTCGGTTTTCCAAACACGCTCTCGATCGCCTCATTGTTTCTTCTATTATTACCGG............................................................................................................................GTATACGTTGTGGAATGCGGAGTACAGGATATCCTTGATGAGGAATTTTGATATCCCATCCGATAATTTGAAAGGCTTCAACTCATCNGGAGGAAGATGTGAACTCAGGCTCAAAGAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341805" ref_strand="+" ref_description="SGN-E341805 [cTOF-9-K8]">
      <seq>gagaatcgaagggagacgtgagaaattcgccggaggcatcgcaagccacacaataaactagacgaaggagaaaagaagaagaagaatctccgtctttaatggctgccgcctcagctagggttttactcgcatctcgtctagcagacctatcacttaagcctcatcaacatcctcctcacctaccctctccttttacccaccacctcctcatccgtcccttactaccttctctttccgcttccaccaggcggcgtacgtccgttaactgccttatttccggcgtagacggcggcggtgtttcggacgactttgtttccaccaggaaatccggtttcggcagtgaattctctgttattgccaatatgctcaagcgaattgaaccgttggacacttctgttatatctaaaggcgtttctgattcagctaaggactcaatgaagcagaccatttctactatgttaggcttgctcccttcagatcaattctcaatcactgttcaggttttccaaacacgctctcgatcgcctcattggttcttctatcattaccgggtatacgttgtggaatgcggagtacagggata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="139731" stop="141035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140031" g_stop="140580" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="551" r_length="551" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="140581" i_stop="140704" i_length="124">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="140705" g_stop="140732" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="579" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E341805" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140031" e_stop="140580"/>
          <exon e_start="140705" e_stop="140732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATCGAAGGGAGACGTGAGAAATTCGCCGGAGGCATCGCAAGCCACACAATAAACTAGACGAAGGAGAAAAGAAGAAGAAGAATCTCCGTCTTTAATGGCTGCCGCCTCAGCTAGGGTTTTACTCGCATCTCGTCTAGCAGACCTATCACTTAAGCCTCATCAACATCCTCCTCACCTACCCTCTCCTTTTACCCACCACCTCCTCATCCGTCCCTTACTTCCTTCTCTTTCCGCTTCCACCAGGCGGCGTACGTCCGTTAACTGCCTTATTTCCGGCGTAGACGGCGGCGGTGTTTCGGACGACTTTGTTTCCACCAGGAAATCCGGTTTCGGCAGTGAATTCTCTGTTATTGCCAATATGCTCAAGCGAATTGAACCGTTGGACACTTCTGTTATATCTAAAGGCGTTTCTGATTCAGCTAAGGACTCAATGAAGCAGACCATTTCTACTATGTTAGGCTTGCTCCCTTCAGATCAATTCTCAATCACTGTTC-GGTTTTCCAAACACGCTCTCGATCGCCTCATTGTTTCTTCTATCATTACCGGGTACCTTATCTCTTCATTTTCATATATGCACAAAGTTGAAAATAGTGATTGTTAATTTGTTAAAGTTGTGGATCAATCTGAATAAGTTATGGTGTATTCGATTGGTGTTGATTTGTGGTGGTAGGTATACGTTGTGGAATGCGGAGTACAGG</genome_strand>
        <mrna_strand>GAGAATCGAAGGGAGACGTGAGAAATTCGCCGGAGGCATCGCAAGCCACACAATAAACTAGACGAAGGAGAAAAGAAGAAGAAGAATCTCCGTCTTTAATGGCTGCCGCCTCAGCTAGGGTTTTACTCGCATCTCGTCTAGCAGACCTATCACTTAAGCCTCATCAACATCCTCCTCACCTACCCTCTCCTTTTACCCACCACCTCCTCATCCGTCCCTTACTACCTTCTCTTTCCGCTTCCACCAGGCGGCGTACGTCCGTTAACTGCCTTATTTCCGGCGTAGACGGCGGCGGTGTTTCGGACGACTTTGTTTCCACCAGGAAATCCGGTTTCGGCAGTGAATTCTCTGTTATTGCCAATATGCTCAAGCGAATTGAACCGTTGGACACTTCTGTTATATCTAAAGGCGTTTCTGATTCAGCTAAGGACTCAATGAAGCAGACCATTTCTACTATGTTAGGCTTGCTCCCTTCAGATCAATTCTCAATCACTGTTCAGGTTTTCCAAACACGCTCTCGATCGCCTCATTGGTTCTTCTATCATTACCGG............................................................................................................................GTATACGTTGTGGAATGCGGAGTACAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E711043" ref_strand="+" ref_description="SGN-E711043 [FA57DB03]">
      <seq>cagaatcgaagggagacgtgagaaattcgccggaggcatcgcaagccacacaataaactagacgaaggagaaaagaagaagaagaatctccgtctttaatggctgccgcctcagctagggttttactcgcatctcgtctagcagacctatcacttaagcctcatcaacatcctcctcacctaccctctccttttacccaccacctcctcatccgtcccttacttccttctctttccgcttccaccaggcggcgtacgtccgttaactgccttatttccggcgtagacggcggcggtgtttcggacgactttgtttccaccaggaaatccggtttcggcagtgaattctctgctattgccaatatgctcaagcgaattgaaccgttggacacttctgttatatctaaaggcgtttctgattcagctaaggactcaatgaagcagaccccccccccccccccccnttgttcccttcagatcaattctcaatcactgttcggttttcccaaacacgctctcgatcgcctcattgtttcttctatccttacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="139732" stop="140878"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140031" g_stop="140578" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="548" r_length="548" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E711043" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140031" e_stop="140578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATCGAAGGGAGACGTGAGAAATTCGCCGGAGGCATCGCAAGCCACACAATAAACTAGACGAAGGAGAAAAGAAGAAGAAGAATCTCCGTCTTTAATGGCTGCCGCCTCAGCTAGGGTTTTACTCGCATCTCGTCTAGCAGACCTATCACTTAAGCCTCATCAACATCCTCCTCACCTACCCTCTCCTTTTACCCACCACCTCCTCATCCGTCCCTTACTTCCTTCTCTTTCCGCTTCCACCAGGCGGCGTACGTCCGTTAACTGCCTTATTTCCGGCGTAGACGGCGGCGGTGTTTCGGACGACTTTGTTTCCACCAGGAAATCCGGTTTCGGCAGTGAATTCTCTGTTATTGCCAATATGCTCAAGCGAATTGAACCGTTGGACACTTCTGTTATATCTAAAGGCGTTTCTGATTCAGCTAAGGACTCAATGAAGCAGACCATTTCTACTATGTTAGGCTTGCTCCCTTCAGATCAATTCTCAATCACTGTTCGGTTTT-CCAAACACGCTCTCGATCGCCTCATTGTTTCTTCTATCATTACC</genome_strand>
        <mrna_strand>CAGAATCGAAGGGAGACGTGAGAAATTCGCCGGAGGCATCGCAAGCCACACAATAAACTAGACGAAGGAGAAAAGAAGAAGAAGAATCTCCGTCTTTAATGGCTGCCGCCTCAGCTAGGGTTTTACTCGCATCTCGTCTAGCAGACCTATCACTTAAGCCTCATCAACATCCTCCTCACCTACCCTCTCCTTTTACCCACCACCTCCTCATCCGTCCCTTACTTCCTTCTCTTTCCGCTTCCACCAGGCGGCGTACGTCCGTTAACTGCCTTATTTCCGGCGTAGACGGCGGCGGTGTTTCGGACGACTTTGTTTCCACCAGGAAATCCGGTTTCGGCAGTGAATTCTCTGCTATTGCCAATATGCTCAAGCGAATTGAACCGTTGGACACTTCTGTTATATCTAAAGGCGTTTCTGATTCAGCTAAGGACTCAATGAAGCAGACC-CCCCCCCCCCCCCCCCNTTGTTCCCTTCAGATCAATTCTCAATCACTGTTCGGTTTTCCCAAACACGCTCTCGATCGCCTCATTGTTTCTTCTATCCTTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E472006" ref_strand="+" ref_description="SGN-E472006 [cSTB-27-K5]">
      <seq>gttaatcgaaggaagacgtgagaacttcgccggaggcatcgcaagccacacaataaaatagacgaaggagaaagaagaagaagaatctccgtctttaatggctgccgcctcagctagggttttactcgcatctcgtctagcagacctctcacttaagcctcatcaacatcctcctcacctaccccctccttttacccaccatctcctcatccgtcccttgcttccttctctttccgcttccaccaggcggcgtacgtccgttaactgccttatttccggcgtagacggcggcggtgtttcggacgactttgtttccaccaggaagtccggtttcggcagtgaattctctgttattgccaatatgctcaagcgaattgaaccgttggacacttctgttatatctaaaggcgtttctgattctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="139734" stop="140754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140031" g_stop="140454" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="423" r_length="423" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E472006" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E472006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140031" e_stop="140454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATCGAAGGGAGACGTGAGAAATTCGCCGGAGGCATCGCAAGCCACACAATAAACTAGACGAAGGAGAAAAGAAGAAGAAGAATCTCCGTCTTTAATGGCTGCCGCCTCAGCTAGGGTTTTACTCGCATCTCGTCTAGCAGACCTATCACTTAAGCCTCATCAACATCCTCCTCACCTACCCTCTCCTTTTACCCACCACCTCCTCATCCGTCCCTTACTTCCTTCTCTTTCCGCTTCCACCAGGCGGCGTACGTCCGTTAACTGCCTTATTTCCGGCGTAGACGGCGGCGGTGTTTCGGACGACTTTGTTTCCACCAGGAAATCCGGTTTCGGCAGTGAATTCTCTGTTATTGCCAATATGCTCAAGCGAATTGAACCGTTGGACACTTCTGTTATATCTAAAGGCGTTTCTGATTCAGC</genome_strand>
        <mrna_strand>GTTAATCGAAGGAAGACGTGAGAACTTCGCCGGAGGCATCGCAAGCCACACAATAAAATAGACGAAGGAG-AAAGAAGAAGAAGAATCTCCGTCTTTAATGGCTGCCGCCTCAGCTAGGGTTTTACTCGCATCTCGTCTAGCAGACCTCTCACTTAAGCCTCATCAACATCCTCCTCACCTACCCCCTCCTTTTACCCACCATCTCCTCATCCGTCCCTTGCTTCCTTCTCTTTCCGCTTCCACCAGGCGGCGTACGTCCGTTAACTGCCTTATTTCCGGCGTAGACGGCGGCGGTGTTTCGGACGACTTTGTTTCCACCAGGAAGTCCGGTTTCGGCAGTGAATTCTCTGTTATTGCCAATATGCTCAAGCGAATTGAACCGTTGGACACTTCTGTTATATCTAAAGGCGTTTCTGATTCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E472010" ref_strand="+" ref_description="SGN-E472010 [cSTB-27-K15]">
      <seq>gagaatcgaaggaagacgtgagaacttcgccggaggcatcgcaagccacacaataaaatagacgaaggagaaagaagaagaagaatctccgtctttaatggctgccgcctcagctagggttttactcgcatctcgtctagcagacctctcacttaagcctcatcaacatcctcctcacctaccccctccttttacccaccatctcctcatccgtcccttgcttccttctctttccgcttccaccaggcggcgtacgtccgttaactgccttatttccggcgtagacggcggcggtgtttcggacgactttgtttccaccaggaagtccggtttcggcagtgaattctctgttattgccaatatgctcaagcgaattgaaccgttggacacttctgttatatctaaaggcgtttctgattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="139731" stop="140751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140031" g_stop="140452" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E472010" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E472010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140031" e_stop="140452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATCGAAGGGAGACGTGAGAAATTCGCCGGAGGCATCGCAAGCCACACAATAAACTAGACGAAGGAGAAAAGAAGAAGAAGAATCTCCGTCTTTAATGGCTGCCGCCTCAGCTAGGGTTTTACTCGCATCTCGTCTAGCAGACCTATCACTTAAGCCTCATCAACATCCTCCTCACCTACCCTCTCCTTTTACCCACCACCTCCTCATCCGTCCCTTACTTCCTTCTCTTTCCGCTTCCACCAGGCGGCGTACGTCCGTTAACTGCCTTATTTCCGGCGTAGACGGCGGCGGTGTTTCGGACGACTTTGTTTCCACCAGGAAATCCGGTTTCGGCAGTGAATTCTCTGTTATTGCCAATATGCTCAAGCGAATTGAACCGTTGGACACTTCTGTTATATCTAAAGGCGTTTCTGATTCA</genome_strand>
        <mrna_strand>GAGAATCGAAGGAAGACGTGAGAACTTCGCCGGAGGCATCGCAAGCCACACAATAAAATAGACGAAGGAG-AAAGAAGAAGAAGAATCTCCGTCTTTAATGGCTGCCGCCTCAGCTAGGGTTTTACTCGCATCTCGTCTAGCAGACCTCTCACTTAAGCCTCATCAACATCCTCCTCACCTACCCCCTCCTTTTACCCACCATCTCCTCATCCGTCCCTTGCTTCCTTCTCTTTCCGCTTCCACCAGGCGGCGTACGTCCGTTAACTGCCTTATTTCCGGCGTAGACGGCGGCGGTGTTTCGGACGACTTTGTTTCCACCAGGAAGTCCGGTTTCGGCAGTGAATTCTCTGTTATTGCCAATATGCTCAAGCGAATTGAACCGTTGGACACTTCTGTTATATCTAAAGGCGTTTCTGATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E477341" ref_strand="+" ref_description="SGN-E477341 [cSTB-47-N14]">
      <seq>gtgaatcgacggaagacgtgagaacttcgccggaggcatcgcaagccacacaataaaatagacgaaggagaaagaagaagacgaatctccgtctgtaatggctgccgcctcagctagggtgttactcgcatctcgtctagcagacctctcacttaagcctcatcaacatcctcctcacctaccccctccttttacccaccatgtgctcatccgtcccttgcttccttctctttccgctgccaccacgcggcgtacgtacgttaactgccttatttccggcgtagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="139731" stop="140617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140031" g_stop="140317" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E477341" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>287</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E477341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140031" e_stop="140317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATCGAAGGGAGACGTGAGAAATTCGCCGGAGGCATCGCAAGCCACACAATAAACTAGACGAAGGAGAAAAGAAGAAGAAGAATCTCCGTCTTTAATGGCTGCCGCCTCAGCTAGGGTTTTACTCGCATCTCGTCTAGCAGACCTATCACTTAAGCCTCATCAACATCCTCCTCACCTACCCTCTCCTTTTACCCACCACCTCCTCATCCGTCCCTTACTTCCTTCTCTTTCCGCTTCCACCAGGCGGCGTACGTCCGTTAACTGCCTTATTTCCGGCGTAGAC</genome_strand>
        <mrna_strand>GTGAATCGACGGAAGACGTGAGAACTTCGCCGGAGGCATCGCAAGCCACACAATAAAATAGACGAAGGAG-AAAGAAGAAGACGAATCTCCGTCTGTAATGGCTGCCGCCTCAGCTAGGGTGTTACTCGCATCTCGTCTAGCAGACCTCTCACTTAAGCCTCATCAACATCCTCCTCACCTACCCCCTCCTTTTACCCACCATGTGCTCATCCGTCCCTTGCTTCCTTCTCTTTCCGCTGCCACCACGCGGCGTACGTACGTTAACTGCCTTATTTCCGGCGTAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278855" ref_strand="+" ref_description="SGN-E278855 [cLER-2-J14]">
      <seq>agaatcgaagggagacgtgagaaattcgccggaggcatcgcaagccacacaataaactagacgaaggagaaaagaagaagaagaatctccgtctttaatggctgccggctcagctagggttttactcgcatctcgtctagcagacctatcacttaagcctcatcaacatcctcctcacctaccctctccttttacccaccacctcctcatgcgtcccttacttccttctctttccgcttccaccaggcggcgtacgttcgttaactgccttatttccggcgtagacggcggcggtgtttcggacgactttgtttccaccaggaaatccggtttcggcagtgaattctctgctattgccaatatgctcaagcgaattgaaccgatggacacttctgttatatctaaaggcgtttctgattcagctaaggactcaatgaagcagaccatttctactatgttaggcttgctcccttcagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="139732" stop="140809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140032" g_stop="140509" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E278855" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140032" e_stop="140509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCGAAGGGAGACGTGAGAAATTCGCCGGAGGCATCGCAAGCCACACAATAAACTAGACGAAGGAGAAAAGAAGAAGAAGAATCTCCGTCTTTAATGGCTGCCGCCTCAGCTAGGGTTTTACTCGCATCTCGTCTAGCAGACCTATCACTTAAGCCTCATCAACATCCTCCTCACCTACCCTCTCCTTTTACCCACCACCTCCTCATCCGTCCCTTACTTCCTTCTCTTTCCGCTTCCACCAGGCGGCGTACGTCCGTTAACTGCCTTATTTCCGGCGTAGACGGCGGCGGTGTTTCGGACGACTTTGTTTCCACCAGGAAATCCGGTTTCGGCAGTGAATTCTCTGTTATTGCCAATATGCTCAAGCGAATTGAACCGTTGGACACTTCTGTTATATCTAAAGGCGTTTCTGATTCAGCTAAGGACTCAATGAAGCAGACCATTTCTACTATGTTAGGCTTGCTCCCTTCAGAT</genome_strand>
        <mrna_strand>AGAATCGAAGGGAGACGTGAGAAATTCGCCGGAGGCATCGCAAGCCACACAATAAACTAGACGAAGGAGAAAAGAAGAAGAAGAATCTCCGTCTTTAATGGCTGCCGGCTCAGCTAGGGTTTTACTCGCATCTCGTCTAGCAGACCTATCACTTAAGCCTCATCAACATCCTCCTCACCTACCCTCTCCTTTTACCCACCACCTCCTCATGCGTCCCTTACTTCCTTCTCTTTCCGCTTCCACCAGGCGGCGTACGTTCGTTAACTGCCTTATTTCCGGCGTAGACGGCGGCGGTGTTTCGGACGACTTTGTTTCCACCAGGAAATCCGGTTTCGGCAGTGAATTCTCTGCTATTGCCAATATGCTCAAGCGAATTGAACCGATGGACACTTCTGTTATATCTAAAGGCGTTTCTGATTCAGCTAAGGACTCAATGAAGCAGACCATTTCTACTATGTTAGGCTTGCTCCCTTCAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E283854" ref_strand="+" ref_description="SGN-E283854 [cLER-13-E13]">
      <seq>gaatcgaagggagacgtgagaaattcgccggaggcatcgcaagccacacaataaactagacgaaggagaaaagaagaagaagaatctccgtctttaatggctgccgcctcagctagggttttactcgcatctcgtctagcagacctatcacttaagcctcatcaacatcctcctcacctaccctctccttttacccaccacctcctcatccgtcccttacttccttctctttccgcttccaccaggcggcgtacgtccgttaactgccttatttccggcgtagacggcggcggtgtttcggacgactttgtttccaccaggaaatccggtttcggcagtgaattctctgttattgccaatatgctcaagcgaattgaaccgttggacacttctgttatatctaaaggcgtttctgattcagctaaggactcaatgaagcagaccatttctactatgttaggcttgctcccttcagatcaattctcaatcactgttcggttttccaaacacgctctcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="139733" stop="140850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140033" g_stop="140550" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E283854" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140033" e_stop="140550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCGAAGGGAGACGTGAGAAATTCGCCGGAGGCATCGCAAGCCACACAATAAACTAGACGAAGGAGAAAAGAAGAAGAAGAATCTCCGTCTTTAATGGCTGCCGCCTCAGCTAGGGTTTTACTCGCATCTCGTCTAGCAGACCTATCACTTAAGCCTCATCAACATCCTCCTCACCTACCCTCTCCTTTTACCCACCACCTCCTCATCCGTCCCTTACTTCCTTCTCTTTCCGCTTCCACCAGGCGGCGTACGTCCGTTAACTGCCTTATTTCCGGCGTAGACGGCGGCGGTGTTTCGGACGACTTTGTTTCCACCAGGAAATCCGGTTTCGGCAGTGAATTCTCTGTTATTGCCAATATGCTCAAGCGAATTGAACCGTTGGACACTTCTGTTATATCTAAAGGCGTTTCTGATTCAGCTAAGGACTCAATGAAGCAGACCATTTCTACTATGTTAGGCTTGCTCCCTTCAGATCAATTCTCAATCACTGTTCGGTTTTCCAAACACGCTCTCGA</genome_strand>
        <mrna_strand>GAATCGAAGGGAGACGTGAGAAATTCGCCGGAGGCATCGCAAGCCACACAATAAACTAGACGAAGGAGAAAAGAAGAAGAAGAATCTCCGTCTTTAATGGCTGCCGCCTCAGCTAGGGTTTTACTCGCATCTCGTCTAGCAGACCTATCACTTAAGCCTCATCAACATCCTCCTCACCTACCCTCTCCTTTTACCCACCACCTCCTCATCCGTCCCTTACTTCCTTCTCTTTCCGCTTCCACCAGGCGGCGTACGTCCGTTAACTGCCTTATTTCCGGCGTAGACGGCGGCGGTGTTTCGGACGACTTTGTTTCCACCAGGAAATCCGGTTTCGGCAGTGAATTCTCTGTTATTGCCAATATGCTCAAGCGAATTGAACCGTTGGACACTTCTGTTATATCTAAAGGCGTTTCTGATTCAGCTAAGGACTCAATGAAGCAGACCATTTCTACTATGTTAGGCTTGCTCCCTTCAGATCAATTCTCAATCACTGTTCGGTTTTCCAAACACGCTCTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E359817" ref_strand="+" ref_description="SGN-E359817 [cLPP-9-M13]">
      <seq>tcgaagggagacgtgagaagttcgccggaggcatcgcaagccacacaataaaatagacgaaggagaaaagaagaagaagaatctccgtctttaatggctgccgcctcagctagggttttactcgcatctcgtctagcagacctctcactgaagcctcatcaacatcctcctcacctaccctctccttttacccaccacctcctcatccgtcccttacttccttctctttccgcttccaccaggcggcgtacgtccgttaattgccttatttccggcgtagacggcggcggtgtttcggacgactttgtttccaccaggaaatccggtttcggcagtgaattctctgttattgccaatatgctcaagcgagttgaaccgttggacacttctgttatatctaaaggcgtttctgattcagctaaggactcaatgaagcagaccatttctactatgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="139736" stop="140791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140036" g_stop="140491" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="456" r_length="456" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E359817" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140036" e_stop="140491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAAGGGAGACGTGAGAAATTCGCCGGAGGCATCGCAAGCCACACAATAAACTAGACGAAGGAGAAAAGAAGAAGAAGAATCTCCGTCTTTAATGGCTGCCGCCTCAGCTAGGGTTTTACTCGCATCTCGTCTAGCAGACCTATCACTTAAGCCTCATCAACATCCTCCTCACCTACCCTCTCCTTTTACCCACCACCTCCTCATCCGTCCCTTACTTCCTTCTCTTTCCGCTTCCACCAGGCGGCGTACGTCCGTTAACTGCCTTATTTCCGGCGTAGACGGCGGCGGTGTTTCGGACGACTTTGTTTCCACCAGGAAATCCGGTTTCGGCAGTGAATTCTCTGTTATTGCCAATATGCTCAAGCGAATTGAACCGTTGGACACTTCTGTTATATCTAAAGGCGTTTCTGATTCAGCTAAGGACTCAATGAAGCAGACCATTTCTACTATGTTA</genome_strand>
        <mrna_strand>TCGAAGGGAGACGTGAGAAGTTCGCCGGAGGCATCGCAAGCCACACAATAAAATAGACGAAGGAGAAAAGAAGAAGAAGAATCTCCGTCTTTAATGGCTGCCGCCTCAGCTAGGGTTTTACTCGCATCTCGTCTAGCAGACCTCTCACTGAAGCCTCATCAACATCCTCCTCACCTACCCTCTCCTTTTACCCACCACCTCCTCATCCGTCCCTTACTTCCTTCTCTTTCCGCTTCCACCAGGCGGCGTACGTCCGTTAATTGCCTTATTTCCGGCGTAGACGGCGGCGGTGTTTCGGACGACTTTGTTTCCACCAGGAAATCCGGTTTCGGCAGTGAATTCTCTGTTATTGCCAATATGCTCAAGCGAGTTGAACCGTTGGACACTTCTGTTATATCTAAAGGCGTTTCTGATTCAGCTAAGGACTCAATGAAGCAGACCATTTCTACTATGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E485637" ref_strand="+" ref_description="SGN-E485637 [cSTE-18-L12]">
      <seq>cgaaggaagacgtgagaacttcgccggaggcatcgcaagccacacaataaaatagacgaaggagaaagaagaagaagaagaatctccgtctttaatggctgccgcctcagctagggttttactcgcatctcgtctagcagacctctcacttaagcctcatcaacatcctcctcacctaccccctccttttacccaccatctcctcatccgtcccttgcttccttctctttccgcttccaccaggcggcgtacgtccgttaactgccttatttccggcgtagacggcggcggtgtttcggacgactttgtttccaccaggaagtccggtttcggcagtgaattctctgttattgccaatatgctcaagcgaattgaaccgttggacacttctgttatatctaaaggcgtttctgattctgctaaggactcaatgaagcagacgatttctactatgttaggcttgctcccttcagatcaattctcagtgactgttcggttttccaaacacgctctcgatcgcctcattgtttcttctattattaccgggtatacgttgtggaatgcggagtacaggatatccttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="139737" stop="141043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140037" g_stop="140580" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="140581" i_stop="140704" i_length="124">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="140705" g_stop="140743" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="585" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E485637" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E485637" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140037" e_stop="140580"/>
          <exon e_start="140705" e_stop="140743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGGGAGACGTGAGAAATTCGCCGGAGGCATCGCAAGCCACACAATAAACTAGACGAAGGAG-AA-AAGAAGAAGAAGAATCTCCGTCTTTAATGGCTGCCGCCTCAGCTAGGGTTTTACTCGCATCTCGTCTAGCAGACCTATCACTTAAGCCTCATCAACATCCTCCTCACCTACCCTCTCCTTTTACCCACCACCTCCTCATCCGTCCCTTACTTCCTTCTCTTTCCGCTTCCACCAGGCGGCGTACGTCCGTTAACTGCCTTATTTCCGGCGTAGACGGCGGCGGTGTTTCGGACGACTTTGTTTCCACCAGGAAATCCGGTTTCGGCAGTGAATTCTCTGTTATTGCCAATATGCTCAAGCGAATTGAACCGTTGGACACTTCTGTTATATCTAAAGGCGTTTCTGATTCAGCTAAGGACTCAATGAAGCAGACCATTTCTACTATGTTAGGCTTGCTCCCTTCAGATCAATTCTCAATCACTGTTCGGTTTTCCAAACACGCTCTCGATCGCCTCATTGTTTCTTCTATCATTACCGGGTACCTTATCTCTTCATTTTCATATATGCACAAAGTTGAAAATAGTGATTGTTAATTTGTTAAAGTTGTGGATCAATCTGAATAAGTTATGGTGTATTCGATTGGTGTTGATTTGTGGTGGTAGGTATACGTTGTGGAATGCGGAGTACAGGATATCCTTGAT</genome_strand>
        <mrna_strand>CGAAGGAAGACGTGAGAACTTCGCCGGAGGCATCGCAAGCCACACAATAAAATAGACGAAGGAGAAAGAAGAAGAAGAAGAATCTCCGTCTTTAATGGCTGCCGCCTCAGCTAGGGTTTTACTCGCATCTCGTCTAGCAGACCTCTCACTTAAGCCTCATCAACATCCTCCTCACCTACCCCCTCCTTTTACCCACCATCTCCTCATCCGTCCCTTGCTTCCTTCTCTTTCCGCTTCCACCAGGCGGCGTACGTCCGTTAACTGCCTTATTTCCGGCGTAGACGGCGGCGGTGTTTCGGACGACTTTGTTTCCACCAGGAAGTCCGGTTTCGGCAGTGAATTCTCTGTTATTGCCAATATGCTCAAGCGAATTGAACCGTTGGACACTTCTGTTATATCTAAAGGCGTTTCTGATTCTGCTAAGGACTCAATGAAGCAGACGATTTCTACTATGTTAGGCTTGCTCCCTTCAGATCAATTCTCAGTGACTGTTCGGTTTTCCAAACACGCTCTCGATCGCCTCATTGTTTCTTCTATTATTACCGG............................................................................................................................GTATACGTTGTGGAATGCGGAGTACAGGATATCCTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E588642" ref_strand="+" ref_description="SGN-E588642 [42200]">
      <seq>cgaaggaagacgtgagaacttcgccggaggcatcgcaagccacacaataaaatagacgaaggagaaagaagaagaagaagaatctccgtctttaatggctgccgcctcagctagggttttactcgcatctcgtctagcagacctctcacttaagcctcatcaacatcctcctcacctaccccctccttttacccaccatctcctcatccgtcccttgcttccttctctttccgcttccaccaggcggcgtacgtccgttaactgccttatttccggcgtagacggcggcggtgtttcggacgactttgtttccaccaggaagtccggtttcggcagtgaattctctgttattgccaatatgctcaagcgaattgaaccgttggacacttctgttatatctaaaggcgtttctgattctgctaaggactcaatgaagcagacgatttctactatgttaggcttgctcccttcagatcaattctcagtgactgttcggttttccaaacacgctctcgatcgcctcattgtttcttctattattaccgggtatacgttgtggaatgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="139737" stop="141024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140037" g_stop="140580" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="140581" i_stop="140704" i_length="124">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="140705" g_stop="140724" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="566" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E588642" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E588642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140037" e_stop="140580"/>
          <exon e_start="140705" e_stop="140724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGGGAGACGTGAGAAATTCGCCGGAGGCATCGCAAGCCACACAATAAACTAGACGAAGGAG-AA-AAGAAGAAGAAGAATCTCCGTCTTTAATGGCTGCCGCCTCAGCTAGGGTTTTACTCGCATCTCGTCTAGCAGACCTATCACTTAAGCCTCATCAACATCCTCCTCACCTACCCTCTCCTTTTACCCACCACCTCCTCATCCGTCCCTTACTTCCTTCTCTTTCCGCTTCCACCAGGCGGCGTACGTCCGTTAACTGCCTTATTTCCGGCGTAGACGGCGGCGGTGTTTCGGACGACTTTGTTTCCACCAGGAAATCCGGTTTCGGCAGTGAATTCTCTGTTATTGCCAATATGCTCAAGCGAATTGAACCGTTGGACACTTCTGTTATATCTAAAGGCGTTTCTGATTCAGCTAAGGACTCAATGAAGCAGACCATTTCTACTATGTTAGGCTTGCTCCCTTCAGATCAATTCTCAATCACTGTTCGGTTTTCCAAACACGCTCTCGATCGCCTCATTGTTTCTTCTATCATTACCGGGTACCTTATCTCTTCATTTTCATATATGCACAAAGTTGAAAATAGTGATTGTTAATTTGTTAAAGTTGTGGATCAATCTGAATAAGTTATGGTGTATTCGATTGGTGTTGATTTGTGGTGGTAGGTATACGTTGTGGAATGCGG</genome_strand>
        <mrna_strand>CGAAGGAAGACGTGAGAACTTCGCCGGAGGCATCGCAAGCCACACAATAAAATAGACGAAGGAGAAAGAAGAAGAAGAAGAATCTCCGTCTTTAATGGCTGCCGCCTCAGCTAGGGTTTTACTCGCATCTCGTCTAGCAGACCTCTCACTTAAGCCTCATCAACATCCTCCTCACCTACCCCCTCCTTTTACCCACCATCTCCTCATCCGTCCCTTGCTTCCTTCTCTTTCCGCTTCCACCAGGCGGCGTACGTCCGTTAACTGCCTTATTTCCGGCGTAGACGGCGGCGGTGTTTCGGACGACTTTGTTTCCACCAGGAAGTCCGGTTTCGGCAGTGAATTCTCTGTTATTGCCAATATGCTCAAGCGAATTGAACCGTTGGACACTTCTGTTATATCTAAAGGCGTTTCTGATTCTGCTAAGGACTCAATGAAGCAGACGATTTCTACTATGTTAGGCTTGCTCCCTTCAGATCAATTCTCAGTGACTGTTCGGTTTTCCAAACACGCTCTCGATCGCCTCATTGTTTCTTCTATTATTACCGG............................................................................................................................GTATACGTTGTGGAATGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E477332" ref_strand="+" ref_description="SGN-E477332 [cSTB-47-L18]">
      <seq>cgaaggaagacgtgagaacttcgccggaggcatcgcaagccacacaataaaatagacgaaggagaaagaagaagaagaagaatctccgtctttaatggctgccgcctcagctagggttttactcgcatctcgtctagcagacctctcacttaagcctcatcaacatcctcctcacctaccccctccttttacccaccatctcctcatccgtcccttgcttccttctctttccgcttccaccaggcggcgtacgtccgttaactgccttatttccggcgtagacggcggcggtgtttcggacgactttgtttccaccaggaagtccggtttcggcagtgaattctctgttattgccaatatgctcaagcgaattgaaccgttggacacttctgttatatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="139737" stop="140734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140037" g_stop="140434" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="400" r_length="400" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E477332" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E477332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140037" e_stop="140434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGGGAGACGTGAGAAATTCGCCGGAGGCATCGCAAGCCACACAATAAACTAGACGAAGGAG-AA-AAGAAGAAGAAGAATCTCCGTCTTTAATGGCTGCCGCCTCAGCTAGGGTTTTACTCGCATCTCGTCTAGCAGACCTATCACTTAAGCCTCATCAACATCCTCCTCACCTACCCTCTCCTTTTACCCACCACCTCCTCATCCGTCCCTTACTTCCTTCTCTTTCCGCTTCCACCAGGCGGCGTACGTCCGTTAACTGCCTTATTTCCGGCGTAGACGGCGGCGGTGTTTCGGACGACTTTGTTTCCACCAGGAAATCCGGTTTCGGCAGTGAATTCTCTGTTATTGCCAATATGCTCAAGCGAATTGAACCGTTGGACACTTCTGTTATATCT</genome_strand>
        <mrna_strand>CGAAGGAAGACGTGAGAACTTCGCCGGAGGCATCGCAAGCCACACAATAAAATAGACGAAGGAGAAAGAAGAAGAAGAAGAATCTCCGTCTTTAATGGCTGCCGCCTCAGCTAGGGTTTTACTCGCATCTCGTCTAGCAGACCTCTCACTTAAGCCTCATCAACATCCTCCTCACCTACCCCCTCCTTTTACCCACCATCTCCTCATCCGTCCCTTGCTTCCTTCTCTTTCCGCTTCCACCAGGCGGCGTACGTCCGTTAACTGCCTTATTTCCGGCGTAGACGGCGGCGGTGTTTCGGACGACTTTGTTTCCACCAGGAAGTCCGGTTTCGGCAGTGAATTCTCTGTTATTGCCAATATGCTCAAGCGAATTGAACCGTTGGACACTTCTGTTATATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E466022" ref_strand="+" ref_description="SGN-E466022 [cPRO-22-P16]">
      <seq>aaggaagacgtgagaacttcgccggaggcatcgcaagccacacaataaaatagacgaggagaaagaagaagaagaatctccgtctttaatggctgccgcctcagctagggttttactcgcatctcgtctagcagacctctcacttaagcctcatcaacatcctcctcacctaccccctccttttacccaccatctcctcatccgtcccttgcttccttctctttccgcttccaccaggcggcgtacgtccgttaactgccttatttccggcgtagacggcggcggtgtttcggacgactttgtttccaccaggaagtccggtttcggcagtgaattctctgttattgccaatatgctcaagcgaattgaaccgttggacacttctgttatatctaaaggcgtttctgattctgctaaggactcaatgaagcagacgatttctactatgttaggcttgctcccttcagatcaattctcagtgactgttcggttttccaaacacgctctcgatcgcctcattgtttcttctattattaccgggtatacgttgtggaatgcggagtacaggatatccttgatgaggaattttgatatcccatccgataatttgaaaggcttcaactcatcggaggaagatgtgaactcaggctcaaagagcaaggggatagaggggggagaaagcggagttggtgtaaatatgtcttctgcggtttcagagagaatgggtattncagctcttgggaaattatctccggaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="139739" stop="141224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140039" g_stop="140580" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="540" r_length="540" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="140581" i_stop="140704" i_length="124">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="140705" g_stop="140924" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="760" r_length="220" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E466022" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E466022" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140039" e_stop="140580"/>
          <exon e_start="140705" e_stop="140924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGGAGACGTGAGAAATTCGCCGGAGGCATCGCAAGCCACACAATAAACTAGACGAAGGAGAAAAGAAGAAGAAGAATCTCCGTCTTTAATGGCTGCCGCCTCAGCTAGGGTTTTACTCGCATCTCGTCTAGCAGACCTATCACTTAAGCCTCATCAACATCCTCCTCACCTACCCTCTCCTTTTACCCACCACCTCCTCATCCGTCCCTTACTTCCTTCTCTTTCCGCTTCCACCAGGCGGCGTACGTCCGTTAACTGCCTTATTTCCGGCGTAGACGGCGGCGGTGTTTCGGACGACTTTGTTTCCACCAGGAAATCCGGTTTCGGCAGTGAATTCTCTGTTATTGCCAATATGCTCAAGCGAATTGAACCGTTGGACACTTCTGTTATATCTAAAGGCGTTTCTGATTCAGCTAAGGACTCAATGAAGCAGACCATTTCTACTATGTTAGGCTTGCTCCCTTCAGATCAATTCTCAATCACTGTTCGGTTTTCCAAACACGCTCTCGATCGCCTCATTGTTTCTTCTATCATTACCGGGTACCTTATCTCTTCATTTTCATATATGCACAAAGTTGAAAATAGTGATTGTTAATTTGTTAAAGTTGTGGATCAATCTGAATAAGTTATGGTGTATTCGATTGGTGTTGATTTGTGGTGGTAGGTATACGTTGTGGAATGCGGAGTACAGGATATCCTTGATGAGGAATTTTGATATCCCATCAGATAATTTGAAAGGCTTCAACTCAACGGAAGAGGATGTGAACTCTGGCTCAAAGAGCGAGGGGATAGAGGGGGGAGAACGCGGAGTTGGTGTAAATATGTCTTCGGCGGTTTCAGAGAAAATGGATATTCAAGCTCTTGGGAATTTATCTCCGGAAGCT</genome_strand>
        <mrna_strand>AAGGAAGACGTGAGAACTTCGCCGGAGGCATCGCAAGCCACACAATAAAATAGACG-AGGAG-AAAGAAGAAGAAGAATCTCCGTCTTTAATGGCTGCCGCCTCAGCTAGGGTTTTACTCGCATCTCGTCTAGCAGACCTCTCACTTAAGCCTCATCAACATCCTCCTCACCTACCCCCTCCTTTTACCCACCATCTCCTCATCCGTCCCTTGCTTCCTTCTCTTTCCGCTTCCACCAGGCGGCGTACGTCCGTTAACTGCCTTATTTCCGGCGTAGACGGCGGCGGTGTTTCGGACGACTTTGTTTCCACCAGGAAGTCCGGTTTCGGCAGTGAATTCTCTGTTATTGCCAATATGCTCAAGCGAATTGAACCGTTGGACACTTCTGTTATATCTAAAGGCGTTTCTGATTCTGCTAAGGACTCAATGAAGCAGACGATTTCTACTATGTTAGGCTTGCTCCCTTCAGATCAATTCTCAGTGACTGTTCGGTTTTCCAAACACGCTCTCGATCGCCTCATTGTTTCTTCTATTATTACCGG............................................................................................................................GTATACGTTGTGGAATGCGGAGTACAGGATATCCTTGATGAGGAATTTTGATATCCCATCCGATAATTTGAAAGGCTTCAACTCATCGGAGGAAGATGTGAACTCAGGCTCAAAGAGCAAGGGGATAGAGGGGGGAGAAAGCGGAGTTGGTGTAAATATGTCTTCTGCGGTTTCAGAGAGAATGGGTATTNCAGCTCTTGGGAAATTATCTCCGGAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728532" ref_strand="+" ref_description="SGN-E728532 [LA18AE05]">
      <seq>tgagaaattcgccggaggcatcgcaagccacacaataaactagacgaaggagaaaagaagaagaagaatctccgtctttaatggctgccgcctcagctagggttttactcgcatctcgtctagcagacctatcacttaagcctcatcaacatcctcctcacctaccctctccttttacccaccacctcctcatccgtcccttacttccttctctttccgcttccaccaggcggcgtacgtccgttaactgccttatttccggcgtagacggcggcggtgtttcggacgactttgtttccaccaggaaatccggtttcggcagtgaattctctgttattgccaatatgctcaagcgaattgaaccgttggacacttctgttatatctaaaggcgtttctgattcagctaaggactcaatgaagcagaccatttctactatgttaggcttgctcccttcagatcaattctcaatcactgttcggttttccaaacacgctctcgatcgcctcattgtttcttctatcattaccgggtatacgttgtggaatgcggagtacaggatatccttgattaggaattttgatatcccatcagataatttgaaaggcttcaactcaacggaagaggatgtgaactctggctcaaagagcgaggggatagaggggggagaacgcggagttggtgtaaatatgtcttcggcggtttcagagaaaatggatattcaagctcttgggaatttatctccggaagctctgaaatatgttcaacaattagaagaagaactctcatcaattaagcaggaactgcattcccagcaacaagaaaatttgcaaatggagtatatcaacgaaagtaacaatgatttgctggaatacctccggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="139749" stop="141273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140049" g_stop="140580" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="532" r_length="532" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="140581" i_stop="140704" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="140705" g_stop="140972" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="800" r_length="268" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E728532" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140049" e_stop="140580"/>
          <exon e_start="140705" e_stop="140972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAAATTCGCCGGAGGCATCGCAAGCCACACAATAAACTAGACGAAGGAGAAAAGAAGAAGAAGAATCTCCGTCTTTAATGGCTGCCGCCTCAGCTAGGGTTTTACTCGCATCTCGTCTAGCAGACCTATCACTTAAGCCTCATCAACATCCTCCTCACCTACCCTCTCCTTTTACCCACCACCTCCTCATCCGTCCCTTACTTCCTTCTCTTTCCGCTTCCACCAGGCGGCGTACGTCCGTTAACTGCCTTATTTCCGGCGTAGACGGCGGCGGTGTTTCGGACGACTTTGTTTCCACCAGGAAATCCGGTTTCGGCAGTGAATTCTCTGTTATTGCCAATATGCTCAAGCGAATTGAACCGTTGGACACTTCTGTTATATCTAAAGGCGTTTCTGATTCAGCTAAGGACTCAATGAAGCAGACCATTTCTACTATGTTAGGCTTGCTCCCTTCAGATCAATTCTCAATCACTGTTCGGTTTTCCAAACACGCTCTCGATCGCCTCATTGTTTCTTCTATCATTACCGGGTACCTTATCTCTTCATTTTCATATATGCACAAAGTTGAAAATAGTGATTGTTAATTTGTTAAAGTTGTGGATCAATCTGAATAAGTTATGGTGTATTCGATTGGTGTTGATTTGTGGTGGTAGGTATACGTTGTGGAATGCGGAGTACAGGATATCCTTGATGAGGAATTTTGATATCCCATCAGATAATTTGAAAGGCTTCAACTCAACGGAAGAGGATGTGAACTCTGGCTCAAAGAGCGAGGGGATAGAGGGGGGAGAACGCGGAGTTGGTGTAAATATGTCTTCGGCGGTTTCAGAGAAAATGGATATTCAAGCTCTTGGGAATTTATCTCCGGAAGCTCTGAAATATGTTCAACAATTAGAAGAAGAACTCTCATCAATTAAGCAG</genome_strand>
        <mrna_strand>TGAGAAATTCGCCGGAGGCATCGCAAGCCACACAATAAACTAGACGAAGGAGAAAAGAAGAAGAAGAATCTCCGTCTTTAATGGCTGCCGCCTCAGCTAGGGTTTTACTCGCATCTCGTCTAGCAGACCTATCACTTAAGCCTCATCAACATCCTCCTCACCTACCCTCTCCTTTTACCCACCACCTCCTCATCCGTCCCTTACTTCCTTCTCTTTCCGCTTCCACCAGGCGGCGTACGTCCGTTAACTGCCTTATTTCCGGCGTAGACGGCGGCGGTGTTTCGGACGACTTTGTTTCCACCAGGAAATCCGGTTTCGGCAGTGAATTCTCTGTTATTGCCAATATGCTCAAGCGAATTGAACCGTTGGACACTTCTGTTATATCTAAAGGCGTTTCTGATTCAGCTAAGGACTCAATGAAGCAGACCATTTCTACTATGTTAGGCTTGCTCCCTTCAGATCAATTCTCAATCACTGTTCGGTTTTCCAAACACGCTCTCGATCGCCTCATTGTTTCTTCTATCATTACCGG............................................................................................................................GTATACGTTGTGGAATGCGGAGTACAGGATATCCTTGATTAGGAATTTTGATATCCCATCAGATAATTTGAAAGGCTTCAACTCAACGGAAGAGGATGTGAACTCTGGCTCAAAGAGCGAGGGGATAGAGGGGGGAGAACGCGGAGTTGGTGTAAATATGTCTTCGGCGGTTTCAGAGAAAATGGATATTCAAGCTCTTGGGAATTTATCTCCGGAAGCTCTGAAATATGTTCAACAATTAGAAGAAGAACTCTCATCAATTAAGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E415344" ref_strand="+" ref_description="SGN-E415344 [STM-21-M17]">
      <seq>gagaacttcgccggaggcatcgcaagccacacaataaaatagacgaaggagaaagaagaagaagaagaatctccgtctttaatggctgccgcctcagctagggttttactcgcatctcgtctagcagacctctcacttaagcctcatcaacatcctcctcacctaccccctccttttacccaccatctcctcatccgtcccttgcttccttctctttccgcttccaccaggcggcgtacgtccgttaactgccttatttccggcgtagacggcggcggtgtttcggacgactttgtttccaccaggaagtccggtttcggcagtgaattctctgttattgccaatatgctcaagcgaattgaaccgttggacacttctgttatatctaaaggcgtttctgattctgctaaggactcaatgaagcagacgatttctactatgttaggcttgctcccttcagatcaattctcagtgactgttcggttttccaaacacgctctcgatcgcctcattgtttcttctattattaccgggtatacgttgtggaatgcggagtacaggatatccttgatgaggaattttgatatcccatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="139750" stop="141064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140050" g_stop="140580" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="140581" i_stop="140704" i_length="124">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="140705" g_stop="140765" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="594" r_length="61" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E415344" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E415344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140050" e_stop="140580"/>
          <exon e_start="140705" e_stop="140765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAATTCGCCGGAGGCATCGCAAGCCACACAATAAACTAGACGAAGGAG-AA-AAGAAGAAGAAGAATCTCCGTCTTTAATGGCTGCCGCCTCAGCTAGGGTTTTACTCGCATCTCGTCTAGCAGACCTATCACTTAAGCCTCATCAACATCCTCCTCACCTACCCTCTCCTTTTACCCACCACCTCCTCATCCGTCCCTTACTTCCTTCTCTTTCCGCTTCCACCAGGCGGCGTACGTCCGTTAACTGCCTTATTTCCGGCGTAGACGGCGGCGGTGTTTCGGACGACTTTGTTTCCACCAGGAAATCCGGTTTCGGCAGTGAATTCTCTGTTATTGCCAATATGCTCAAGCGAATTGAACCGTTGGACACTTCTGTTATATCTAAAGGCGTTTCTGATTCAGCTAAGGACTCAATGAAGCAGACCATTTCTACTATGTTAGGCTTGCTCCCTTCAGATCAATTCTCAATCACTGTTCGGTTTTCCAAACACGCTCTCGATCGCCTCATTGTTTCTTCTATCATTACCGGGTACCTTATCTCTTCATTTTCATATATGCACAAAGTTGAAAATAGTGATTGTTAATTTGTTAAAGTTGTGGATCAATCTGAATAAGTTATGGTGTATTCGATTGGTGTTGATTTGTGGTGGTAGGTATACGTTGTGGAATGCGGAGTACAGGATATCCTTGATGAGGAATTTTGATATCCCATCA</genome_strand>
        <mrna_strand>GAGAACTTCGCCGGAGGCATCGCAAGCCACACAATAAAATAGACGAAGGAGAAAGAAGAAGAAGAAGAATCTCCGTCTTTAATGGCTGCCGCCTCAGCTAGGGTTTTACTCGCATCTCGTCTAGCAGACCTCTCACTTAAGCCTCATCAACATCCTCCTCACCTACCCCCTCCTTTTACCCACCATCTCCTCATCCGTCCCTTGCTTCCTTCTCTTTCCGCTTCCACCAGGCGGCGTACGTCCGTTAACTGCCTTATTTCCGGCGTAGACGGCGGCGGTGTTTCGGACGACTTTGTTTCCACCAGGAAGTCCGGTTTCGGCAGTGAATTCTCTGTTATTGCCAATATGCTCAAGCGAATTGAACCGTTGGACACTTCTGTTATATCTAAAGGCGTTTCTGATTCTGCTAAGGACTCAATGAAGCAGACGATTTCTACTATGTTAGGCTTGCTCCCTTCAGATCAATTCTCAGTGACTGTTCGGTTTTCCAAACACGCTCTCGATCGCCTCATTGTTTCTTCTATTATTACCGG............................................................................................................................GTATACGTTGTGGAATGCGGAGTACAGGATATCCTTGATGAGGAATTTTGATATCCCATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E436845" ref_strand="+" ref_description="SGN-E436845 [cSTA-1-I4]">
      <seq>gagaacttcgccggaggcatcgcaagccacacaataaaatagacgaaggagaaagaagaagaagaagaatctccgtctttaatggctgccgcctcagctagggttttactcgcatctcgtctagcagacctctcacttaagcctcatcaacatcctcctcacctaccccctccttttacccaccatctcctcatccgtcccttgcttccttctctttccgcttccaccaggcggcgtacgtccgttaactgccttatttccggcgtagacagcggcggtgtttcggacgactttgtttccaccaggaagtccggtttcggcagtgaattctctgttattgccaatatgctcaagcgaattgaaccgttggacacttctgttatatctaaaggcgtttctgattctgctaaggactcaatgaagcagacgatttctactatgttaggcttgctcccttcagatcaattctcagtgactgttcggttttccaaacacgctctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="139750" stop="140849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140050" g_stop="140549" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E436845" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E436845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140050" e_stop="140549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAATTCGCCGGAGGCATCGCAAGCCACACAATAAACTAGACGAAGGAG-AA-AAGAAGAAGAAGAATCTCCGTCTTTAATGGCTGCCGCCTCAGCTAGGGTTTTACTCGCATCTCGTCTAGCAGACCTATCACTTAAGCCTCATCAACATCCTCCTCACCTACCCTCTCCTTTTACCCACCACCTCCTCATCCGTCCCTTACTTCCTTCTCTTTCCGCTTCCACCAGGCGGCGTACGTCCGTTAACTGCCTTATTTCCGGCGTAGACGGCGGCGGTGTTTCGGACGACTTTGTTTCCACCAGGAAATCCGGTTTCGGCAGTGAATTCTCTGTTATTGCCAATATGCTCAAGCGAATTGAACCGTTGGACACTTCTGTTATATCTAAAGGCGTTTCTGATTCAGCTAAGGACTCAATGAAGCAGACCATTTCTACTATGTTAGGCTTGCTCCCTTCAGATCAATTCTCAATCACTGTTCGGTTTTCCAAACACGCTCTCG</genome_strand>
        <mrna_strand>GAGAACTTCGCCGGAGGCATCGCAAGCCACACAATAAAATAGACGAAGGAGAAAGAAGAAGAAGAAGAATCTCCGTCTTTAATGGCTGCCGCCTCAGCTAGGGTTTTACTCGCATCTCGTCTAGCAGACCTCTCACTTAAGCCTCATCAACATCCTCCTCACCTACCCCCTCCTTTTACCCACCATCTCCTCATCCGTCCCTTGCTTCCTTCTCTTTCCGCTTCCACCAGGCGGCGTACGTCCGTTAACTGCCTTATTTCCGGCGTAGACAGCGGCGGTGTTTCGGACGACTTTGTTTCCACCAGGAAGTCCGGTTTCGGCAGTGAATTCTCTGTTATTGCCAATATGCTCAAGCGAATTGAACCGTTGGACACTTCTGTTATATCTAAAGGCGTTTCTGATTCTGCTAAGGACTCAATGAAGCAGACGATTTCTACTATGTTAGGCTTGCTCCCTTCAGATCAATTCTCAGTGACTGTTCGGTTTTCCAAACACGCTCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E562503" ref_strand="+" ref_description="SGN-E562503 [943]">
      <seq>cacgaggccacacaataaaatagacgaaggagaaagaagaagaagaatctccggtctttaatggctgccgcctcagctaggttttactcgcatctcgtctagcagacctctcacttaagcctcatcaacatcctcctcacctaccccctccttttacccaccatctcctcatccgtcccttgcttccttctctttccgcttccaccaggcggcgtacgtccgttaactgccttatttccggcgtagacggcggcggtgtttcggacgactttgtttccaccaggaagtccggtttcggcagtgaattctctgttattgccaatatgctcaagcgaattgaaccgttggacacttctgttatatctaaaggcgtttctgattctgctaaggactcaatgaagcagacgatttctactatgttaggcttgcgtcccttcagatcaattctcagtgactgttcggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="139770" stop="140831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140067" g_stop="140531" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="463" r_length="463" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E562503" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E562503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140067" e_stop="140531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCGCAAGCCACACAATAAACTAGACGAAGGAGAAAAGAAGAAGAAGAATCTCC-GTCTTTAATGGCTGCCGCCTCAGCTAGGGTTTTACTCGCATCTCGTCTAGCAGACCTATCACTTAAGCCTCATCAACATCCTCCTCACCTACCCTCTCCTTTTACCCACCACCTCCTCATCCGTCCCTTACTTCCTTCTCTTTCCGCTTCCACCAGGCGGCGTACGTCCGTTAACTGCCTTATTTCCGGCGTAGACGGCGGCGGTGTTTCGGACGACTTTGTTTCCACCAGGAAATCCGGTTTCGGCAGTGAATTCTCTGTTATTGCCAATATGCTCAAGCGAATTGAACCGTTGGACACTTCTGTTATATCTAAAGGCGTTTCTGATTCAGCTAAGGACTCAATGAAGCAGACCATTTCTACTATGTTAGGCTTGC-TCCCTTCAGATCAATTCTCAATCACTGTTCGGT</genome_strand>
        <mrna_strand>CA-CG-AGGCCACACAATAAAATAGACGAAGGAG-AAAGAAGAAGAAGAATCTCCGGTCTTTAATGGCTGCCGCCTCAGCTA-GGTTTTACTCGCATCTCGTCTAGCAGACCTCTCACTTAAGCCTCATCAACATCCTCCTCACCTACCCCCTCCTTTTACCCACCATCTCCTCATCCGTCCCTTGCTTCCTTCTCTTTCCGCTTCCACCAGGCGGCGTACGTCCGTTAACTGCCTTATTTCCGGCGTAGACGGCGGCGGTGTTTCGGACGACTTTGTTTCCACCAGGAAGTCCGGTTTCGGCAGTGAATTCTCTGTTATTGCCAATATGCTCAAGCGAATTGAACCGTTGGACACTTCTGTTATATCTAAAGGCGTTTCTGATTCTGCTAAGGACTCAATGAAGCAGACGATTTCTACTATGTTAGGCTTGCGTCCCTTCAGATCAATTCTCAGTGACTGTTCGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E563518" ref_strand="+" ref_description="SGN-E563518 [1959]">
      <seq>gccacacaataaaatagacgaaggagaaagaagaagaagaatctccgtctttagggtggctgccgcctcagctagggttttactcgcatctcgtctagcagacctctcacttaagcctcatcaacatcctcctcacctaccccctccttttacccaccatctcctcatccgtcccttgcttccttctcttgtcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="139775" stop="140566"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140075" g_stop="140269" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E563518" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>195</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E563518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140075" e_stop="140269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCACACAATAAACTAGACGAAGGAGAAAAGAAGAAGAAGAATCTCCGTCTTTA--ATGGCTGCCGCCTCAGCTAGGGTTTTACTCGCATCTCGTCTAGCAGACCTATCACTTAAGCCTCATCAACATCCTCCTCACCTACCCTCTCCTTTTACCCACCACCTCCTCATCCGTCCCTTACTTCCTTCTCTTTCCGCT</genome_strand>
        <mrna_strand>GCCACACAATAAAATAGACGAAGGAG-AAAGAAGAAGAAGAATCTCCGTCTTTAGGGTGGCTGCCGCCTCAGCTAGGGTTTTACTCGCATCTCGTCTAGCAGACCTCTCACTTAAGCCTCATCAACATCCTCCTCACCTACCCCCTCCTTTTACCCACCATCTCCTCATCCGTCCCTTGCTTCCTTCTCTTGTCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E477222" ref_strand="+" ref_description="SGN-E477222 [cSTB-47-F19]">
      <seq>aatagacgaggagaaagaagaagaagaatctccgtctttaatggctgccgcctcagctagggttttactcgcatctcgtctagcagacctctcacttaagcctcatcaacatcctcctcacctaccccctccttttacccaccatctcctcatccgtcccttgcttccttctctttccgcttccaccaggcggcgtacgtccgttaactgccttatttccggcgtagacggcggcggtgtttcggacgactttgtttccaccaggaagtccggtttcggcagtgaattctctgttattgccaatatgctcaagcgaattgaaccgttggacacttctgttatatctaaaggcgtttctgattctgctaaggactcaatgaagcagacgatttctactatgttaggcttgctcccttcagatcaattctcagtgactgttcggttttccaaacacgctctcgatcgcctcattgtttcttctattattaccgggtatacgttgtggaatgcggagtacaggatatccttgatgaggaattttgatatcccatccgataatttgaaaggcttcaactcatcggaggaagatgtgaactcangctcaaagagcaaggggatagaggggggagaaagcggagttggtgtaaatatgtcttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="139787" stop="141171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140087" g_stop="140580" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="140581" i_stop="140704" i_length="124">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="140705" g_stop="140871" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="659" r_length="167" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E477222" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E477222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140087" e_stop="140580"/>
          <exon e_start="140705" e_stop="140871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAGACGAAGGAGAAAAGAAGAAGAAGAATCTCCGTCTTTAATGGCTGCCGCCTCAGCTAGGGTTTTACTCGCATCTCGTCTAGCAGACCTATCACTTAAGCCTCATCAACATCCTCCTCACCTACCCTCTCCTTTTACCCACCACCTCCTCATCCGTCCCTTACTTCCTTCTCTTTCCGCTTCCACCAGGCGGCGTACGTCCGTTAACTGCCTTATTTCCGGCGTAGACGGCGGCGGTGTTTCGGACGACTTTGTTTCCACCAGGAAATCCGGTTTCGGCAGTGAATTCTCTGTTATTGCCAATATGCTCAAGCGAATTGAACCGTTGGACACTTCTGTTATATCTAAAGGCGTTTCTGATTCAGCTAAGGACTCAATGAAGCAGACCATTTCTACTATGTTAGGCTTGCTCCCTTCAGATCAATTCTCAATCACTGTTCGGTTTTCCAAACACGCTCTCGATCGCCTCATTGTTTCTTCTATCATTACCGGGTACCTTATCTCTTCATTTTCATATATGCACAAAGTTGAAAATAGTGATTGTTAATTTGTTAAAGTTGTGGATCAATCTGAATAAGTTATGGTGTATTCGATTGGTGTTGATTTGTGGTGGTAGGTATACGTTGTGGAATGCGGAGTACAGGATATCCTTGATGAGGAATTTTGATATCCCATCAGATAATTTGAAAGGCTTCAACTCAACGGAAGAGGATGTGAACTCTGGCTCAAAGAGCGAGGGGATAGAGGGGGGAGAACGCGGAGTTGGTGTAAATATGTCTTCGG</genome_strand>
        <mrna_strand>AATAGACG-AGGAG-AAAGAAGAAGAAGAATCTCCGTCTTTAATGGCTGCCGCCTCAGCTAGGGTTTTACTCGCATCTCGTCTAGCAGACCTCTCACTTAAGCCTCATCAACATCCTCCTCACCTACCCCCTCCTTTTACCCACCATCTCCTCATCCGTCCCTTGCTTCCTTCTCTTTCCGCTTCCACCAGGCGGCGTACGTCCGTTAACTGCCTTATTTCCGGCGTAGACGGCGGCGGTGTTTCGGACGACTTTGTTTCCACCAGGAAGTCCGGTTTCGGCAGTGAATTCTCTGTTATTGCCAATATGCTCAAGCGAATTGAACCGTTGGACACTTCTGTTATATCTAAAGGCGTTTCTGATTCTGCTAAGGACTCAATGAAGCAGACGATTTCTACTATGTTAGGCTTGCTCCCTTCAGATCAATTCTCAGTGACTGTTCGGTTTTCCAAACACGCTCTCGATCGCCTCATTGTTTCTTCTATTATTACCGG............................................................................................................................GTATACGTTGTGGAATGCGGAGTACAGGATATCCTTGATGAGGAATTTTGATATCCCATCCGATAATTTGAAAGGCTTCAACTCATCGGAGGAAGATGTGAACTCANGCTCAAAGAGCAAGGGGATAGAGGGGGGAGAAAGCGGAGTTGGTGTAAATATGTCTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E343124" ref_strand="+" ref_description="SGN-E343124 [cTOF-17-E22]">
      <seq>gaaaagaagaagaagaatctccgtctttaatggctgccgcctcagctagggttttactcgcatctcgtctagcagacctatcacttaagcctcatcaacatcctcctcacctaccctctccttttacccaccacctcctcatccgtcccttacttccttctctttccgcttccaccaggcggcgtacgtccgttaactgccttatttccggcgtagacggcggcggtgtttcggacgactttgtttccaccaggaaatccggtttcggcagtgaattctctgttattgccaatatgctcaagcgaattgaaccgttggacacttctgttatatctaaaggcgtttctgattcagctaaggactcaatgaagcagaccatttctactatgttaggcttgctcccttcagatcaattctcaatcactgttcggttttccaaacacgctctcgatcgcctcattgtttcttctatcattaccgggtatacgttgtggaatgcggagtacaggatatccttgatgaggaattttgatatcccatcagataatttgaaaggcttcaactcaacggaagaggatgtgaactctggctcanagagcgaggggatagaggggggagaacgcngagttggtgtaaatatgtcttcggcggtttcagaagaaatggatattcaagctcttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="139800" stop="141206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140100" g_stop="140580" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="140581" i_stop="140704" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="140705" g_stop="140906" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="683" r_length="202" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E343124" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343124" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140100" e_stop="140580"/>
          <exon e_start="140705" e_stop="140906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGAAGAAGAAGAATCTCCGTCTTTAATGGCTGCCGCCTCAGCTAGGGTTTTACTCGCATCTCGTCTAGCAGACCTATCACTTAAGCCTCATCAACATCCTCCTCACCTACCCTCTCCTTTTACCCACCACCTCCTCATCCGTCCCTTACTTCCTTCTCTTTCCGCTTCCACCAGGCGGCGTACGTCCGTTAACTGCCTTATTTCCGGCGTAGACGGCGGCGGTGTTTCGGACGACTTTGTTTCCACCAGGAAATCCGGTTTCGGCAGTGAATTCTCTGTTATTGCCAATATGCTCAAGCGAATTGAACCGTTGGACACTTCTGTTATATCTAAAGGCGTTTCTGATTCAGCTAAGGACTCAATGAAGCAGACCATTTCTACTATGTTAGGCTTGCTCCCTTCAGATCAATTCTCAATCACTGTTCGGTTTTCCAAACACGCTCTCGATCGCCTCATTGTTTCTTCTATCATTACCGGGTACCTTATCTCTTCATTTTCATATATGCACAAAGTTGAAAATAGTGATTGTTAATTTGTTAAAGTTGTGGATCAATCTGAATAAGTTATGGTGTATTCGATTGGTGTTGATTTGTGGTGGTAGGTATACGTTGTGGAATGCGGAGTACAGGATATCCTTGATGAGGAATTTTGATATCCCATCAGATAATTTGAAAGGCTTCAACTCAACGGAAGAGGATGTGAACTCTGGCTCAAAGAGCGAGGGGATAGAGGGGGGAGAACGCGGAGTTGGTGTAAATATGTCTTCGGCGGTTTCAGAGAAAATGGATATTCAAGCTCTTGGG</genome_strand>
        <mrna_strand>GAAAAGAAGAAGAAGAATCTCCGTCTTTAATGGCTGCCGCCTCAGCTAGGGTTTTACTCGCATCTCGTCTAGCAGACCTATCACTTAAGCCTCATCAACATCCTCCTCACCTACCCTCTCCTTTTACCCACCACCTCCTCATCCGTCCCTTACTTCCTTCTCTTTCCGCTTCCACCAGGCGGCGTACGTCCGTTAACTGCCTTATTTCCGGCGTAGACGGCGGCGGTGTTTCGGACGACTTTGTTTCCACCAGGAAATCCGGTTTCGGCAGTGAATTCTCTGTTATTGCCAATATGCTCAAGCGAATTGAACCGTTGGACACTTCTGTTATATCTAAAGGCGTTTCTGATTCAGCTAAGGACTCAATGAAGCAGACCATTTCTACTATGTTAGGCTTGCTCCCTTCAGATCAATTCTCAATCACTGTTCGGTTTTCCAAACACGCTCTCGATCGCCTCATTGTTTCTTCTATCATTACCGG............................................................................................................................GTATACGTTGTGGAATGCGGAGTACAGGATATCCTTGATGAGGAATTTTGATATCCCATCAGATAATTTGAAAGGCTTCAACTCAACGGAAGAGGATGTGAACTCTGGCTCANAGAGCGAGGGGATAGAGGGGGGAGAACGCNGAGTTGGTGTAAATATGTCTTCGGCGGTTTCAGAAGAAATGGATATTCAAGCTCTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728988" ref_strand="+" ref_description="SGN-E728988 [LA19CE01]">
      <seq>aagaagaatctccgtctttaatggctgccgcctcagctagggttttactcgcatctcgtctagcagacctatcacttaagcctcatcaacatcctcctcacctaccctctccttttacccaccacctcctcatccgtcccttacttccttctctttccgcttccaccaggcggcgtacgtccgttaactgccttatttccggcgtagacggcggcggcgtttcggacgactttgtttccaccaggaaataccggcttcggcagtgaattctctgttattgccaatatgctcaagcgaattgaaccgttggacactgatgttatatctaaaggcgtttctgattcagctaaggactcagtgaagcagaccatttctactatgttaggcttgctccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="139809" stop="140803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140109" g_stop="140503" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="396" r_length="396" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E728988" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140109" e_stop="140503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAATCTCCGTCTTTAATGGCTGCCGCCTCAGCTAGGGTTTTACTCGCATCTCGTCTAGCAGACCTATCACTTAAGCCTCATCAACATCCTCCTCACCTACCCTCTCCTTTTACCCACCACCTCCTCATCCGTCCCTTACTTCCTTCTCTTTCCGCTTCCACCAGGCGGCGTACGTCCGTTAACTGCCTTATTTCCGGCGTAGACGGCGGCGGTGTTTCGGACGACTTTGTTTCCACCAGGAAAT-CCGGTTTCGGCAGTGAATTCTCTGTTATTGCCAATATGCTCAAGCGAATTGAACCGTTGGACACTTCTGTTATATCTAAAGGCGTTTCTGATTCAGCTAAGGACTCAATGAAGCAGACCATTTCTACTATGTTAGGCTTGCTCCCT</genome_strand>
        <mrna_strand>AAGAAGAATCTCCGTCTTTAATGGCTGCCGCCTCAGCTAGGGTTTTACTCGCATCTCGTCTAGCAGACCTATCACTTAAGCCTCATCAACATCCTCCTCACCTACCCTCTCCTTTTACCCACCACCTCCTCATCCGTCCCTTACTTCCTTCTCTTTCCGCTTCCACCAGGCGGCGTACGTCCGTTAACTGCCTTATTTCCGGCGTAGACGGCGGCGGCGTTTCGGACGACTTTGTTTCCACCAGGAAATACCGGCTTCGGCAGTGAATTCTCTGTTATTGCCAATATGCTCAAGCGAATTGAACCGTTGGACACTGATGTTATATCTAAAGGCGTTTCTGATTCAGCTAAGGACTCAGTGAAGCAGACCATTTCTACTATGTTAGGCTTGCTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E452370" ref_strand="+" ref_description="SGN-E452370 [cSTS-16-H15]">
      <seq>agagaactagtctttaatggctgccgcctcagctagggttttactcgcatctcgtctagcagacctctcacttaagcctcatcaacatcctcctcacctaccccctccttttacccaccatctcctcatccgtcccttgcttccttctctttccgcttccaccaggcggcgtacgtccgttaactgccttatttccggcgtagacggcggcggtgtttcggacgactttgtttccaccaggaagtccggtttcggcagtgaattctctgttattgccaatatgctcaagcgaattgaaccgttggacacttctgttatatctaaaggcgtttctgattctgctaaggactcaatgaagcagacgatttctactatgttaggcttgctcccttcagatcaattctcagtgactgttcggttttccaaacacgctctcgatcgcctcattgtttcttctattattaccgggtatacgttgtggaatgcggagtacaggatatccttgatgaggaattttgatatcccatccgataatttgaaaggcttcaactcatcggaggaagatgtgaactcaggctcaaagagcaaggggatagaggggggagaaagcggagttggtgtaaatatgtcttctgcggtttcagagagaatggatattcaagctcttgggaatttatctccggaagctctgaaatatgttcaacaattagaagaagaactctcatcagttaagcaggaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="139822" stop="141273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140110" g_stop="140580" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="140581" i_stop="140704" i_length="124">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="140705" g_stop="140972" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="736" r_length="268" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="140973" i_stop="141077" i_length="105">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.891" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141078" g_stop="141082" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="737" r_stop="741" r_length="5" r_score="0.600"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E452370" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E452370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140110" e_stop="140580"/>
          <exon e_start="140705" e_stop="140972"/>
          <exon e_start="141078" e_stop="141082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAATCTCCGTCTTTAATGGCTGCCGCCTCAGCTAGGGTTTTACTCGCATCTCGTCTAGCAGACCTATCACTTAAGCCTCATCAACATCCTCCTCACCTACCCTCTCCTTTTACCCACCACCTCCTCATCCGTCCCTTACTTCCTTCTCTTTCCGCTTCCACCAGGCGGCGTACGTCCGTTAACTGCCTTATTTCCGGCGTAGACGGCGGCGGTGTTTCGGACGACTTTGTTTCCACCAGGAAATCCGGTTTCGGCAGTGAATTCTCTGTTATTGCCAATATGCTCAAGCGAATTGAACCGTTGGACACTTCTGTTATATCTAAAGGCGTTTCTGATTCAGCTAAGGACTCAATGAAGCAGACCATTTCTACTATGTTAGGCTTGCTCCCTTCAGATCAATTCTCAATCACTGTTCGGTTTTCCAAACACGCTCTCGATCGCCTCATTGTTTCTTCTATCATTACCGGGTACCTTATCTCTTCATTTTCATATATGCACAAAGTTGAAAATAGTGATTGTTAATTTGTTAAAGTTGTGGATCAATCTGAATAAGTTATGGTGTATTCGATTGGTGTTGATTTGTGGTGGTAGGTATACGTTGTGGAATGCGGAGTACAGGATATCCTTGATGAGGAATTTTGATATCCCATCAGATAATTTGAAAGGCTTCAACTCAACGGAAGAGGATGTGAACTCTGGCTCAAAGAGCGAGGGGATAGAGGGGGGAGAACGCGGAGTTGGTGTAAATATGTCTTCGGCGGTTTCAGAGAAAATGGATATTCAAGCTCTTGGGAATTTATCTCCGGAAGCTCTGAAATATGTTCAACAATTAGAAGAAGAACTCTCATCAATTAAGCAGGTGAAATTCTTCCTCTCTTTTAATCTATTCAAGCTACTGTCTGTGTTTGATTATTTGCCAACTTGGCTTGTCATTTTTAAGTTACAGAGAATTTGGTTACTGCAGGATAT</genome_strand>
        <mrna_strand>AG-AGAA-CTA-GTCTTTAATGGCTGCCGCCTCAGCTAGGGTTTTACTCGCATCTCGTCTAGCAGACCTCTCACTTAAGCCTCATCAACATCCTCCTCACCTACCCCCTCCTTTTACCCACCATCTCCTCATCCGTCCCTTGCTTCCTTCTCTTTCCGCTTCCACCAGGCGGCGTACGTCCGTTAACTGCCTTATTTCCGGCGTAGACGGCGGCGGTGTTTCGGACGACTTTGTTTCCACCAGGAAGTCCGGTTTCGGCAGTGAATTCTCTGTTATTGCCAATATGCTCAAGCGAATTGAACCGTTGGACACTTCTGTTATATCTAAAGGCGTTTCTGATTCTGCTAAGGACTCAATGAAGCAGACGATTTCTACTATGTTAGGCTTGCTCCCTTCAGATCAATTCTCAGTGACTGTTCGGTTTTCCAAACACGCTCTCGATCGCCTCATTGTTTCTTCTATTATTACCGG............................................................................................................................GTATACGTTGTGGAATGCGGAGTACAGGATATCCTTGATGAGGAATTTTGATATCCCATCCGATAATTTGAAAGGCTTCAACTCATCGGAGGAAGATGTGAACTCAGGCTCAAAGAGCAAGGGGATAGAGGGGGGAGAAAGCGGAGTTGGTGTAAATATGTCTTCTGCGGTTTCAGAGAGAATGGATATTCAAGCTCTTGGGAATTTATCTCCGGAAGCTCTGAAATATGTTCAACAATTAGAAGAAGAACTCTCATCAGTTAAGCAG.........................................................................................................GAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E452231" ref_strand="+" ref_description="SGN-E452231 [cSTS-16-G15]">
      <seq>agagaactagtctttaatggctgccgcctcagctagggttttactcgcatctcgtctagcagacctctcacttaagcctcatcaacatcctcctcacctaccccctccttttacccaccatctcctcatccgtcccttgcttccttctctttccgcttccaccaggcggcgtacgtccgttaactgccttatttccggcgtagacggcggcggtgtttcggacgactttgtttccaccaggaagtccggtttcggcagtgaattctctgttattgccaatatgctcaagcgaattgaaccgttggacacttctgttatatctaaaggcgtttctgattctgctaaggactcaatgaagcagacgatttctactatgttaggcttgctcccttcagatcaattctcagtgactgttcggttttccaaacacgctctcgatcgcctcattgtttcttctattattaccgggtatacgttgtggaatgcggagtacaggatatccttgatgaggaattttgatatcccatccgataatttgaaaggcttcaactcatcggaggaagatgtgaactcaggctcaaagagcaaggggatagaggggggagaaagcggagttggtgtaaatatgtcttctgcggtttcagagagaatggatattcaagctcttgggaatttatctccggaagctctgaaatatgttcaacaattagaagaagaactctcatcagttaagcaggaactgcattcccagcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="139822" stop="141273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140110" g_stop="140580" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="140581" i_stop="140704" i_length="124">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="140705" g_stop="140972" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="736" r_length="268" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E452231" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E452231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140110" e_stop="140580"/>
          <exon e_start="140705" e_stop="140972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAATCTCCGTCTTTAATGGCTGCCGCCTCAGCTAGGGTTTTACTCGCATCTCGTCTAGCAGACCTATCACTTAAGCCTCATCAACATCCTCCTCACCTACCCTCTCCTTTTACCCACCACCTCCTCATCCGTCCCTTACTTCCTTCTCTTTCCGCTTCCACCAGGCGGCGTACGTCCGTTAACTGCCTTATTTCCGGCGTAGACGGCGGCGGTGTTTCGGACGACTTTGTTTCCACCAGGAAATCCGGTTTCGGCAGTGAATTCTCTGTTATTGCCAATATGCTCAAGCGAATTGAACCGTTGGACACTTCTGTTATATCTAAAGGCGTTTCTGATTCAGCTAAGGACTCAATGAAGCAGACCATTTCTACTATGTTAGGCTTGCTCCCTTCAGATCAATTCTCAATCACTGTTCGGTTTTCCAAACACGCTCTCGATCGCCTCATTGTTTCTTCTATCATTACCGGGTACCTTATCTCTTCATTTTCATATATGCACAAAGTTGAAAATAGTGATTGTTAATTTGTTAAAGTTGTGGATCAATCTGAATAAGTTATGGTGTATTCGATTGGTGTTGATTTGTGGTGGTAGGTATACGTTGTGGAATGCGGAGTACAGGATATCCTTGATGAGGAATTTTGATATCCCATCAGATAATTTGAAAGGCTTCAACTCAACGGAAGAGGATGTGAACTCTGGCTCAAAGAGCGAGGGGATAGAGGGGGGAGAACGCGGAGTTGGTGTAAATATGTCTTCGGCGGTTTCAGAGAAAATGGATATTCAAGCTCTTGGGAATTTATCTCCGGAAGCTCTGAAATATGTTCAACAATTAGAAGAAGAACTCTCATCAATTAAGCAG</genome_strand>
        <mrna_strand>AG-AGAA-CTA-GTCTTTAATGGCTGCCGCCTCAGCTAGGGTTTTACTCGCATCTCGTCTAGCAGACCTCTCACTTAAGCCTCATCAACATCCTCCTCACCTACCCCCTCCTTTTACCCACCATCTCCTCATCCGTCCCTTGCTTCCTTCTCTTTCCGCTTCCACCAGGCGGCGTACGTCCGTTAACTGCCTTATTTCCGGCGTAGACGGCGGCGGTGTTTCGGACGACTTTGTTTCCACCAGGAAGTCCGGTTTCGGCAGTGAATTCTCTGTTATTGCCAATATGCTCAAGCGAATTGAACCGTTGGACACTTCTGTTATATCTAAAGGCGTTTCTGATTCTGCTAAGGACTCAATGAAGCAGACGATTTCTACTATGTTAGGCTTGCTCCCTTCAGATCAATTCTCAGTGACTGTTCGGTTTTCCAAACACGCTCTCGATCGCCTCATTGTTTCTTCTATTATTACCGG............................................................................................................................GTATACGTTGTGGAATGCGGAGTACAGGATATCCTTGATGAGGAATTTTGATATCCCATCCGATAATTTGAAAGGCTTCAACTCATCGGAGGAAGATGTGAACTCAGGCTCAAAGAGCAAGGGGATAGAGGGGGGAGAAAGCGGAGTTGGTGTAAATATGTCTTCTGCGGTTTCAGAGAGAATGGATATTCAAGCTCTTGGGAATTTATCTCCGGAAGCTCTGAAATATGTTCAACAATTAGAAGAAGAACTCTCATCAGTTAAGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E256593" ref_strand="+" ref_description="SGN-E256593 [cLEG-38-H15]">
      <seq>aacatcctcctcacctaccctctccttttacccaccacctcctcatccgtcccttacttccttctctttccgcttccaccaggcggcgtacgtccgttaactgccttatttccggcgtagacggcggcggtgtttcggacgactttgtttccaccaggaaatccggtttcggcagtgaattctctgttattgccaatatgctcaagcgaattgaaccgttggacacttctgttatatctaaaggcgtttctgattcagctaaggactcaatgaagcagaccatttctactatgttaggcttgctcccttcagatcaattctcaatcactgttcggttttccaaacacgctctcgatcgcctcattgtttcttctatcattaccgggtatacgttgtggaatgcggagtacaggatatccttgatgaggaattttgatatcccatcagataatttgaaaggcttcaactcaacggaagaggatgtgaactctggctcaaagagcgaggggatagaggggggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="139896" stop="141141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140196" g_stop="140580" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="140581" i_stop="140704" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="140705" g_stop="140841" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="522" r_length="137" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E256593" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140196" e_stop="140580"/>
          <exon e_start="140705" e_stop="140841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATCCTCCTCACCTACCCTCTCCTTTTACCCACCACCTCCTCATCCGTCCCTTACTTCCTTCTCTTTCCGCTTCCACCAGGCGGCGTACGTCCGTTAACTGCCTTATTTCCGGCGTAGACGGCGGCGGTGTTTCGGACGACTTTGTTTCCACCAGGAAATCCGGTTTCGGCAGTGAATTCTCTGTTATTGCCAATATGCTCAAGCGAATTGAACCGTTGGACACTTCTGTTATATCTAAAGGCGTTTCTGATTCAGCTAAGGACTCAATGAAGCAGACCATTTCTACTATGTTAGGCTTGCTCCCTTCAGATCAATTCTCAATCACTGTTCGGTTTTCCAAACACGCTCTCGATCGCCTCATTGTTTCTTCTATCATTACCGGGTACCTTATCTCTTCATTTTCATATATGCACAAAGTTGAAAATAGTGATTGTTAATTTGTTAAAGTTGTGGATCAATCTGAATAAGTTATGGTGTATTCGATTGGTGTTGATTTGTGGTGGTAGGTATACGTTGTGGAATGCGGAGTACAGGATATCCTTGATGAGGAATTTTGATATCCCATCAGATAATTTGAAAGGCTTCAACTCAACGGAAGAGGATGTGAACTCTGGCTCAAAGAGCGAGGGGATAGAGGGGGGAG</genome_strand>
        <mrna_strand>AACATCCTCCTCACCTACCCTCTCCTTTTACCCACCACCTCCTCATCCGTCCCTTACTTCCTTCTCTTTCCGCTTCCACCAGGCGGCGTACGTCCGTTAACTGCCTTATTTCCGGCGTAGACGGCGGCGGTGTTTCGGACGACTTTGTTTCCACCAGGAAATCCGGTTTCGGCAGTGAATTCTCTGTTATTGCCAATATGCTCAAGCGAATTGAACCGTTGGACACTTCTGTTATATCTAAAGGCGTTTCTGATTCAGCTAAGGACTCAATGAAGCAGACCATTTCTACTATGTTAGGCTTGCTCCCTTCAGATCAATTCTCAATCACTGTTCGGTTTTCCAAACACGCTCTCGATCGCCTCATTGTTTCTTCTATCATTACCGG............................................................................................................................GTATACGTTGTGGAATGCGGAGTACAGGATATCCTTGATGAGGAATTTTGATATCCCATCAGATAATTTGAAAGGCTTCAACTCAACGGAAGAGGATGTGAACTCTGGCTCAAAGAGCGAGGGGATAGAGGGGGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E253372" ref_strand="+" ref_description="SGN-E253372 [cLEG-24-E1]">
      <seq>ggcgtacgtccgttaactgccttatttccggcgtagacggcggcggtgtttcggacgactttgtttccaccaggaaatccggtttcggcagtgaattctctgttattgccaatatgctcaagcgaattgaaccgttggacacttctgttatatctaaaggcgtttctgattcagctaaggactcaatgaagcagaccatttctactatgttaggcttgctcccttcagatcaattctcaatcactgttcggttttccaaacacgctctcgatcgcctcattgtttcttctatcattaccgggtaccttatctcttcattttcatatatgcacaaagttgaaaatagtgattgttaatttgttaaagttgtggatcaatctgaataagttatggtgtattcgattggtgttgatttgtggtggtaggtatacgttgtggaatgcggagtacaggatatccttgatgaggaattttgatatcccatcagataatttgaaaggcttcaactcaacggaagaggatgtgaactctggctcaaagagcgaggggatagaggggggagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="139980" stop="141144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140280" g_stop="140844" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="565" r_length="565" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E253372" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140280" e_stop="140844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGTACGTCCGTTAACTGCCTTATTTCCGGCGTAGACGGCGGCGGTGTTTCGGACGACTTTGTTTCCACCAGGAAATCCGGTTTCGGCAGTGAATTCTCTGTTATTGCCAATATGCTCAAGCGAATTGAACCGTTGGACACTTCTGTTATATCTAAAGGCGTTTCTGATTCAGCTAAGGACTCAATGAAGCAGACCATTTCTACTATGTTAGGCTTGCTCCCTTCAGATCAATTCTCAATCACTGTTCGGTTTTCCAAACACGCTCTCGATCGCCTCATTGTTTCTTCTATCATTACCGGGTACCTTATCTCTTCATTTTCATATATGCACAAAGTTGAAAATAGTGATTGTTAATTTGTTAAAGTTGTGGATCAATCTGAATAAGTTATGGTGTATTCGATTGGTGTTGATTTGTGGTGGTAGGTATACGTTGTGGAATGCGGAGTACAGGATATCCTTGATGAGGAATTTTGATATCCCATCAGATAATTTGAAAGGCTTCAACTCAACGGAAGAGGATGTGAACTCTGGCTCAAAGAGCGAGGGGATAGAGGGGGGAGAAC</genome_strand>
        <mrna_strand>GGCGTACGTCCGTTAACTGCCTTATTTCCGGCGTAGACGGCGGCGGTGTTTCGGACGACTTTGTTTCCACCAGGAAATCCGGTTTCGGCAGTGAATTCTCTGTTATTGCCAATATGCTCAAGCGAATTGAACCGTTGGACACTTCTGTTATATCTAAAGGCGTTTCTGATTCAGCTAAGGACTCAATGAAGCAGACCATTTCTACTATGTTAGGCTTGCTCCCTTCAGATCAATTCTCAATCACTGTTCGGTTTTCCAAACACGCTCTCGATCGCCTCATTGTTTCTTCTATCATTACCGGGTACCTTATCTCTTCATTTTCATATATGCACAAAGTTGAAAATAGTGATTGTTAATTTGTTAAAGTTGTGGATCAATCTGAATAAGTTATGGTGTATTCGATTGGTGTTGATTTGTGGTGGTAGGTATACGTTGTGGAATGCGGAGTACAGGATATCCTTGATGAGGAATTTTGATATCCCATCAGATAATTTGAAAGGCTTCAACTCAACGGAAGAGGATGTGAACTCTGGCTCAAAGAGCGAGGGGATAGAGGGGGGAGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E277390" ref_strand="+" ref_description="SGN-E277390 [cLER-3-K20]">
      <seq>ttaactgccttatttccggcgtagacggcggcggtgtttcggacgactttgtttccaccaggaaatccggtttcggcagtgaattctctgttattgccaatatgctcaagcgaattgaaccgttggacacttctgttatatctaaaggcgtttctgattcagctaaggactcaatgaagcagaccatttctactatgttaggcttgctcccttcagatcaattctcaatcactgttcggttttccaaacacgctctcgatcgcctcattgtttcttctatcattaccgggtatacgttgtggaatgcggagtacaggatatccttgatgaggaattttgatatcccatcagataatttgaaaggcttcaactcaacggaagaggatgtgaactctggctcaaagagcgaggggatagaggggggagaacgcggagttggtgtaaatatgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0189G15-cLSK1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0189G15.1" temp_strand="+" temp_description="C02HBa0189G15.1  AC215413.1 htgs_phase:3 submitted_to_sgn_as:gi|161789400|gb|AC215413.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence">
        <position start="139992" stop="141167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140292" g_stop="140580" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="140581" i_stop="140704" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="140705" g_stop="140867" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="452" r_length="163" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0189G15.1" gen_strand="+" ref_id="SGN-E277390" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0189G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140292" e_stop="140580"/>
          <exon e_start="140705" e_stop="140867"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAACTGCCTTATTTCCGGCGTAGACGGCGGCGGTGTTTCGGACGACTTTGTTTCCACCAGGAAATCCGGTTTCGGCAGTGAATTCTCTGTTATTGCCAATATGCTCAAGCGAATTGAACCGTTGGACACTTCTGTTATATCTAAAGGCGTTTCTGATTCAGCTAAGGACTCAATGAAGCAGACCATTTCTACTATGTTAGGCTTGCTCCCTTCAGATCAATTCTCAATCACTGTTCGGTTTTCCAAACACGCTCTCGATCGCCTCATTGTTTCTTCTATCATTACCGGGTACCTTATCTCTTCATTTTCATATATGCACAAAGTTGAAAATAGTGATTGTTAATTTGTTAAAGTTGTGGATCAATCTGAATAAGTTATGGTGTATTCGATTGGTGTTGATTTGTGGTGGTAGGTATACGTTGTGGAATGCGGAGTACAGGATATCCTTGATGAGGAATTTTGATATCCCATCAGATAATTTGAAAGGCTTCAACTCAACGGAAGAGGATGTGAACTCTGGCTCAAAGAGCGAGGGGATAGAGGGGGGAGAACGCGGAGTTGGTGTAAATATGTCT</genome_strand>
        <mrna_strand>TTAACTGCCTTATTTCCGGCGTAGACGGCGGCGGTGTTTCGGACGACTTTGTTTCCACCAGGAAATCCGGTTTCGGCAGTGAATTCTCTGTTATTGCCAATATGCTCAAGCGAATTGAACCGTTGGACACTTCTGTTATATCTAAAGGCGTTTCTGATTCAGCTAAGGACTCAATGAAGCAGACCATTTCTACTATGTTAGGCTTGCTCCCTTCAGATCAATTCTCAATCACTGTTCGGTTTTCCAAACACGCTCTCGATCGCCTCATTGTTTCTTCTATCATTACCGG............................................................................................................................GTATACGTTGTGGAATGCGGAGTACAGGATATCCTTGATGAGGAATTTTGATATCCCATCAGATAATTTGAAAGGCTTCAACTCAACGGAAGAGGATGTGAACTCTGGCTCAAAGAGCGAGGGGATAGAGGGGGGAGAACGCGGAGTTGGTGTAAATATGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>322</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1902" PGL_stop="4325"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1902" e_stop="2044"/>
            <exon e_start="3424" e_stop="3531"/>
            <exon e_start="3949" e_stop="4000"/>
            <exon e_start="4070" e_stop="4325"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.518" e_score="1.000"/>
          <exon-intron don_prob="0.842" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.273" acc_prob="0.969" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1902" e_stop="2044" e_length="143"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.518">
            <gDNA_intron_boundary i_start="2045" i_stop="3423" i_length="1379"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="3424" e_stop="3531" e_length="108"/>
          </exon>
          <intron i_serial="2" don_prob="0.842" acc_prob="0.981">
            <gDNA_intron_boundary i_start="3532" i_stop="3948" i_length="417"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="3949" e_stop="4000" e_length="52"/>
          </exon>
          <intron i_serial="3" don_prob="0.273" acc_prob="0.969">
            <gDNA_intron_boundary i_start="4001" i_stop="4069" i_length="69"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="4070" e_stop="4325" e_length="256"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1902" stop="2044"/>
              <exon start="3424" stop="3531"/>
              <exon start="3949" stop="4000"/>
              <exon start="4070" stop="4325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295169" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTCCGGCTGCGTGAAGGTGTAGGTGTGGCAACTAACAATGTTGCTGAATACAGAGGCGTAATCTTAGGACTAAGATATGCTCTTGAGAAAGGTTTCAAACACATTAAAGTCAAGGGCGATTCGAAACTTGTCTGCATGCAG : ACTCAAGGAATCTGGAAATGCAAGAATCAGAACATGGCTGAGCTATCCAAGATTGTTAAAGAGCTTAAAGATCAGTTTATGTCTTTCCAGATCAACCACATGGACAGA : GAATCCAACACTGAAGCCGATGCCCAGGCAAATTTAGCCGTGTATCTCAAGA : ATGGCGAAATTCAAGTGGAATGTGACATGATAACTTAATTAAGTCACCAACTACTACCTCAACTTGTTGGGATTTAGGAAATGATGAATGACCGCCAAGACAGACCAATTTGGATATTCAGTTGTCTGAAACTACACTTGTAACATGTAGATATATGATCTGAATTATGTGCATGTAACCTAATTATGTATCTGGATTGAAAGTAGCTTCTGCTGTAACCTAATTTGCAATGAAAATTGGTTGGGACAAGTACACC</gDNA_template>
            <first_frame> F  S  G  C  V  K  V  *  V  W  Q  L  T  M  L  L  N  T  E  A  *  S  *  D  *  D  M  L  L  R  K  V  S  N  T  L  K  S  R  A  I  R  N  L  S  A  C  R :   L  K  E  S  G  N  A  R  I  R  T  W  L  S  Y  P  R  L  L  K  S  L  K  I  S  L  C  L  S  R  S  T  T  W  T  E :   N  P  T  L  K  P  M  P  R  Q  I  *  P  C  I  S  R  :  M  A  K  F  K  W  N  V  T  *  *  L  N  *  V  T  N  Y  Y  L  N  L  L  G  F  R  K  *  *  M  T  A  K  T  D  Q  F  G  Y  S  V  V  *  N  Y  T  C  N  M  *  I  Y  D  L  N  Y  V  H  V  T  *  L  C  I  W  I  E  S  S  F  C  C  N  L  I  C  N  E  N  W  L  G  Q  V  H  </first_frame>
            <second_frame>  F  P  A  A  *  R  C  R  C  G  N  *  Q  C  C  *  I  Q  R  R  N  L  R  T  K  I  C  S  *  E  R  F  Q  T  H  *  S  Q  G  R  F  E  T  C  L  H  A   : D  S  R  N  L  E  M  Q  E  S  E  H  G  *  A  I  Q  D  C  *  R  A  *  R  S  V  Y  V  F  P  D  Q  P  H  G  Q   : R  I  Q  H  *  S  R  C  P  G  K  F  S  R  V  S  Q  E :   W  R  N  S  S  G  M  *  H  D  N  L  I  K  S  P  T  T  T  S  T  C  W  D  L  G  N  D  E  *  P  P  R  Q  T  N  L  D  I  Q  L  S  E  T  T  L  V  T  C  R  Y  M  I  *  I  M  C  M  *  P  N  Y  V  S  G  L  K  V  A  S  A  V  T  *  F  A  M  K  I  G  W  D  K  Y  T </second_frame>
            <third_frame>   F  R  L  R  E  G  V  G  V  A  T  N  N  V  A  E  Y  R  G  V  I  L  G  L  R  Y  A  L  E  K  G  F  K  H  I  K  V  K  G  D  S  K  L  V  C  M  Q  :  T  Q  G  I  W  K  C  K  N  Q  N  M  A  E  L  S  K  I  V  K  E  L  K  D  Q  F  M  S  F  Q  I  N  H  M  D  R  :  E  S  N  T  E  A  D  A  Q  A  N  L  A  V  Y  L  K   : N  G  E  I  Q  V  E  C  D  M  I  T  *  L  S  H  Q  L  L  P  Q  L  V  G  I  *  E  M  M  N  D  R  Q  D  R  P  I  W  I  F  S  C  L  K  L  H  L  *  H  V  D  I  *  S  E  L  C  A  C  N  L  I  M  Y  L  D  *  K  *  L  L  L  *  P  N  L  Q  *  K  L  V  G  T  S  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1904" stop="2044"/>
                    <exon start="3424" stop="3531"/>
                    <exon start="3949" stop="4000"/>
                    <exon start="4070" stop="4107"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FRLREGVGVATNNVAEYRGVILGLRYALEKGFKHIKVKGDSKLVCMQTQGIWKCKNQNMAELSKIVKELKDQFMSFQINHMDRESNTEADAQANLAVYLKNGEIQVECDMIT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="4738" PGL_stop="15467"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12351" e_stop="12748"/>
            <exon e_start="13447" e_stop="13500"/>
            <exon e_start="14057" e_stop="14116"/>
            <exon e_start="15074" e_stop="15467"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12351" e_stop="12748" e_length="398"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="12749" i_stop="13446" i_length="698"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="13447" e_stop="13500" e_length="54"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="13501" i_stop="14056" i_length="556"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="14057" e_stop="14116" e_length="60"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.985">
            <gDNA_intron_boundary i_start="14117" i_stop="15073" i_length="957"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="15074" e_stop="15467" e_length="394"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12351" stop="12748"/>
              <exon start="13447" stop="13500"/>
              <exon start="14057" stop="14116"/>
              <exon start="15074" stop="15399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551826" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12351" stop="12748"/>
              <exon start="13447" stop="13500"/>
              <exon start="14057" stop="14116"/>
              <exon start="15074" stop="15347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12352" stop="12748"/>
              <exon start="13447" stop="13500"/>
              <exon start="14057" stop="14116"/>
              <exon start="15074" stop="15298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12352" stop="12748"/>
              <exon start="13447" stop="13500"/>
              <exon start="14057" stop="14116"/>
              <exon start="15074" stop="15171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12352" stop="12748"/>
              <exon start="13447" stop="13500"/>
              <exon start="14057" stop="14112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12353" stop="12748"/>
              <exon start="13447" stop="13491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12358" stop="12748"/>
              <exon start="13447" stop="13500"/>
              <exon start="14057" stop="14116"/>
              <exon start="15074" stop="15338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12358" stop="12748"/>
              <exon start="13447" stop="13496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12361" stop="12713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12363" stop="12748"/>
              <exon start="13447" stop="13500"/>
              <exon start="14057" stop="14116"/>
              <exon start="15074" stop="15120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12368" stop="12748"/>
              <exon start="13447" stop="13500"/>
              <exon start="14057" stop="14116"/>
              <exon start="15074" stop="15106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317398" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12373" stop="12748"/>
              <exon start="13447" stop="13500"/>
              <exon start="14057" stop="14116"/>
              <exon start="15074" stop="15103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12373" stop="12748"/>
              <exon start="13447" stop="13500"/>
              <exon start="14057" stop="14116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12387" stop="12748"/>
              <exon start="13447" stop="13500"/>
              <exon start="14057" stop="14116"/>
              <exon start="15074" stop="15176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E618697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12390" stop="12748"/>
              <exon start="13447" stop="13500"/>
              <exon start="14057" stop="14116"/>
              <exon start="15074" stop="15266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12406" stop="12748"/>
              <exon start="13447" stop="13500"/>
              <exon start="14057" stop="14116"/>
              <exon start="15074" stop="15244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12413" stop="12748"/>
              <exon start="13447" stop="13500"/>
              <exon start="14057" stop="14116"/>
              <exon start="15074" stop="15263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12669" stop="12748"/>
              <exon start="13447" stop="13500"/>
              <exon start="14057" stop="14116"/>
              <exon start="15074" stop="15421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14057" stop="14116"/>
              <exon start="15074" stop="15467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293058" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTCCTTCCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAG : GCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAG : GATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAG : TTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTTGGTTGAAACAATACAAGGTTCAGGCTTCAAGTTGCAAACATTGAATCTGAGCTTTCAGGATGAAGAAGATATTAGCTAAGTGGTGGCTTGTAGAATTCAGAGACATGATAGGCTGATATCTTTCACGGGCATCCTGAGAGATCTCTGTTTATTTGTATGCCAGTAGTTTCAGTAAGCCTATATCTGTAACATTTTTGTGTTATGCAGTTCTTTGATCTTTTTCTTCCTTAGCATATGTTCCTTTCCGCAACTTATAAAAATACTTGTGAATTACTAATGATCAGCAGAATCATTTTGTTTACTTGTTGAAACAAGTGGTATACGATTGGAAAAGGTACTTCTTATGA</gDNA_template>
            <first_frame> V  P  S  I  C  N  L  A  S  G  *  E  *  K  I  T  L  R  N  L  R  R  K  K  K  I  W  R  P  S  Q  H  F  P  F  V  E  P  N  L  I  L  E  F  P  I  L  H  L  M  Q  F  P  S  F  S  Q  C  N  F  F  G  V  K  A  T  G  A  L  A  V  V  I  L  A  L  Q  V  R  *  K  R  R  Y  L  *  E  L  P  G  Y  V  L  Q  L  R  K  M  V  L  L  L  L  P  K  K  N  L  L  L  P  L  H  L  I  K  L  F  L  F  P  S  P  L  P  T  F  *  L  C  S  F  R :   Q  K  E  Q  *  M  K  L  L  F  L  P  *  L  T  L  *  R :   I  L  K  A  L  Q  V  S  K  F  K  L  S  R  A  L  Q  V  S  S :   *  Q  S  K  R  Q  Y  K  L  Q  G  W  L  Q  V  W  L  K  Q  Y  K  V  Q  A  S  S  C  K  H  *  I  *  A  F  R  M  K  K  I  L  A  K  W  W  L  V  E  F  R  D  M  I  G  *  Y  L  S  R  A  S  *  E  I  S  V  Y  L  Y  A  S  S  F  S  K  P  I  S  V  T  F  L  C  Y  A  V  L  *  S  F  S  S  L  A  Y  V  P  F  R  N  L  *  K  Y  L  *  I  T  N  D  Q  Q  N  H  F  V  Y  L  L  K  Q  V  V  Y  D  W  K  R  Y  F  L  * </first_frame>
            <second_frame>  F  L  P  F  V  I  W  L  L  D  K  S  E  K  S  L  *  G  I  C  V  G  K  K  K  Y  G  D  R  L  S  I  F  R  L  *  S  Q  I  S  F  S  N  S  P  F  F  I  *  C  N  S  P  A  F  P  N  A  I  S  S  V  S  K  Q  Q  E  H  W  R  W  L  F  L  L  F  K  F  G  E  S  E  G  T  F  E  N  Y  Q  D  M  F  C  N  *  G  R  W  C  Y  C  C  C  R  R  R  I  C  C  S  H  Y  I  *  S  N  C  F  C  F  R  L  P  F  R  R  S  N  Y  V  L  S   : G  R  R  N  N  E  *  S  C  Y  S  F  R  D  *  L  F  R   : G  Y  *  R  H  Y  R  S  Q  N  S  S  C  R  G  H  C  K  C  R   : V  N  K  A  N  D  N  T  S  Y  R  G  G  F  K  F  G  *  N  N  T  R  F  R  L  Q  V  A  N  I  E  S  E  L  S  G  *  R  R  Y  *  L  S  G  G  L  *  N  S  E  T  *  *  A  D  I  F  H  G  H  P  E  R  S  L  F  I  C  M  P  V  V  S  V  S  L  Y  L  *  H  F  C  V  M  Q  F  F  D  L  F  L  P  *  H  M  F  L  S  A  T  Y  K  N  T  C  E  L  L  M  I  S  R  I  I  L  F  T  C  *  N  K  W  Y  T  I  G  K  G  T  S  Y   </second_frame>
            <third_frame>   S  F  H  L  *  S  G  F  W  I  R  V  K  N  H  S  E  E  F  A  S  E  K  K  N  M  A  T  V  S  A  F  S  V  C  R  A  K  S  H  S  R  I  P  H  S  S  S  N  A  I  P  Q  L  F  P  M  Q  F  L  R  C  Q  S  N  R  S  I  G  G  G  Y  S  C  S  S  S  S  V  K  A  K  V  P  L  R  T  T  R  I  C  S  A  T  E  E  D  G  A  T  A  V  A  E  E  E  S  A  A  P  T  T  S  D  Q  T  V  S  V  S  V  S  P  S  D  V  L  T  M  F  F  Q  :  A  E  G  T  M  N  E  A  A  I  P  S  V  T  N  S  L  E  :  D  I  E  G  I  T  G  L  K  I  Q  V  V  E  G  I  A  S  V  E  :  L  T  K  Q  T  T  I  Q  A  T  G  V  A  S  S  L  V  E  T  I  Q  G  S  G  F  K  L  Q  T  L  N  L  S  F  Q  D  E  E  D  I  S  *  V  V  A  C  R  I  Q  R  H  D  R  L  I  S  F  T  G  I  L  R  D  L  C  L  F  V  C  Q  *  F  Q  *  A  Y  I  C  N  I  F  V  L  C  S  S  L  I  F  F  F  L  S  I  C  S  F  P  Q  L  I  K  I  L  V  N  Y  *  *  S  A  E  S  F  C  L  L  V  E  T  S  G  I  R  L  E  K  V  L  L  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12368" stop="12748"/>
                    <exon start="13447" stop="13500"/>
                    <exon start="14057" stop="14116"/>
                    <exon start="15074" stop="15199"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>618</number_coding_nucleotides>
                  <number_encoded_amino_acids>206</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGFWIRVKNHSEEFASEKKNMATVSAFSVCRAKSHSRIPHSSSNAIPQLFPMQFLRCQSNRSIGGGYSCSSSSVKAKVPLRTTRICSATEEDGATAVAEEESAAPTTSDQTVSVSVSPSDVLTMFFQAEGTMNEAAIPSVTNSLEDIEGITGLKIQVVEGIASVELTKQTTIQATGVASSLVETIQGSGFKLQTLNLSFQDEEDIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="4745" e_stop="4783"/>
            <exon e_start="5074" e_stop="5223"/>
            <exon e_start="5445" e_stop="5603"/>
            <exon e_start="7418" e_stop="7477"/>
            <exon e_start="8074" e_stop="8172"/>
            <exon e_start="9476" e_stop="9583"/>
            <exon e_start="9663" e_stop="9806"/>
            <exon e_start="10985" e_stop="11092"/>
            <exon e_start="11522" e_stop="11573"/>
            <exon e_start="11641" e_stop="11914"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.893" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.767" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.740" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="0.616" acc_prob="0.849" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4745" e_stop="4783" e_length="39"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="4784" i_stop="5073" i_length="290"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5074" e_stop="5223" e_length="150"/>
          </exon>
          <intron i_serial="2" don_prob="0.893" acc_prob="1.000">
            <gDNA_intron_boundary i_start="5224" i_stop="5444" i_length="221"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5445" e_stop="5603" e_length="159"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="5604" i_stop="7417" i_length="1814"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7418" e_stop="7477" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.961" acc_prob="0.998">
            <gDNA_intron_boundary i_start="7478" i_stop="8073" i_length="596"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="8074" e_stop="8172" e_length="99"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.767">
            <gDNA_intron_boundary i_start="8173" i_stop="9475" i_length="1303"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="9476" e_stop="9583" e_length="108"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="9584" i_stop="9662" i_length="79"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="9663" e_stop="9806" e_length="144"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.979">
            <gDNA_intron_boundary i_start="9807" i_stop="10984" i_length="1178"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="10985" e_stop="11092" e_length="108"/>
          </exon>
          <intron i_serial="8" don_prob="0.740" acc_prob="0.917">
            <gDNA_intron_boundary i_start="11093" i_stop="11521" i_length="429"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="11522" e_stop="11573" e_length="52"/>
          </exon>
          <intron i_serial="9" don_prob="0.616" acc_prob="0.849">
            <gDNA_intron_boundary i_start="11574" i_stop="11640" i_length="67"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="11641" e_stop="11914" e_length="274"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4745" stop="4783"/>
              <exon start="5074" stop="5223"/>
              <exon start="5445" stop="5603"/>
              <exon start="7418" stop="7477"/>
              <exon start="8074" stop="8172"/>
              <exon start="9476" stop="9583"/>
              <exon start="9663" stop="9806"/>
              <exon start="10985" stop="11091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4750" stop="4783"/>
              <exon start="5074" stop="5223"/>
              <exon start="5445" stop="5603"/>
              <exon start="7418" stop="7477"/>
              <exon start="8074" stop="8172"/>
              <exon start="9476" stop="9583"/>
              <exon start="9663" stop="9709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4751" stop="4783"/>
              <exon start="5074" stop="5223"/>
              <exon start="5445" stop="5603"/>
              <exon start="7418" stop="7477"/>
              <exon start="8074" stop="8172"/>
              <exon start="9476" stop="9568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4763" stop="4783"/>
              <exon start="5074" stop="5223"/>
              <exon start="5445" stop="5603"/>
              <exon start="7418" stop="7477"/>
              <exon start="8074" stop="8138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5095" stop="5223"/>
              <exon start="5445" stop="5468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9562" stop="9583"/>
              <exon start="9663" stop="9806"/>
              <exon start="10985" stop="11092"/>
              <exon start="11522" stop="11573"/>
              <exon start="11641" stop="11914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11005" stop="11092"/>
              <exon start="11522" stop="11573"/>
              <exon start="11641" stop="11892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269900" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAGTCCCAACTACTCCCTTCACTCTCTTCCTCTGCTCG : TGGTGGAGTAACTTGCAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCT : GTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGG : CAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAG : ATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGT : CCCCCCTACATACAGTGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCTGCAGATGGAAGTATG : GTTTTCCGGTTGCGTGAAGGTGTGGGTGTGGCAACTAACAACGTTGCTGAATATAGAGGTGTAATCTTAGGGCTAAAATATGCTCTTGAGAAAGGTTTCAAACATGTAAAAGTTAAGGGTGACTCAAAACTCGTCTGCATGCAG : ACTCAAGGAATCTGGAAATGCAAGAACCAGAACATGGCTGAGCTATCCAAGATTGTGAAAGAGCTTAAAGATCATTTTGTATCATTCCAGATCAACCATATTTACAGA : GAATTCAACACTGAAGCTGATGCCCAGGCAAATTTAGCCGTGTATCTTAAGA : GTGGTGAATTTCAAGTGGAATGTGACAAGAAAACAACTTAATATTGTGAAGTCACCAACTACCCCAACTTGCTTGGGGGATTTTGTGAAGGATGAATGACACTCAAGACCGATGCATAATGGATCTTCTCTGGTCTTGTTTTTTTTTTTTGTAGATATATAATCTGAATCATCTGGATTAGAGAAACTTCTGTTTAGGGGCCTGCTCGAATCCATTATTCTCTTCTCACTTGCAATGGAAATTAATTAGTTCTCTAAAGCTAACTATTCTAGCA</gDNA_template>
            <first_frame> Q  V  P  T  T  P  F  T  L  F  L  C  S  :  W  W  S  N  L  Q  S  Q  V  N  A  L  E  L  D  T  *  M  G  D  E  K  D  A  F  Y  V  V  H  K  G  D  V  I  A  V  Y  K  N  L  S  D  L  Q  A  L  L  R  S  S  :  V  G  E  P  A  I  S  V  Y  K  G  Y  H  L  A  K  Q  S  E  E  Y  L  A  S  H  G  L  K  N  A  M  Y  S  M  D  F  S  D  V  R  D  D  L  F  G  I  L  V  P  C  P  F  R  :  Q  P  G  S  S  K  D  K  I  M  G  K  N  L  P  E  K  R  M  Q  :  M  E  V  V  A  S  P  S  F  S  A  A  G  Q  Q  K  H  A  T  L  D  N  C  L  E  I  P  P  I  S  S  Y  C  :  P  P  Y  I  Q  C  S  C  I  L  E  F  D  G  A  S  K  G  N  P  G  P  A  G  A  G  A  V  L  R  A  A  D  G  S  M  :  V  F  R  L  R  E  G  V  G  V  A  T  N  N  V  A  E  Y  R  G  V  I  L  G  L  K  Y  A  L  E  K  G  F  K  H  V  K  V  K  G  D  S  K  L  V  C  M  Q  :  T  Q  G  I  W  K  C  K  N  Q  N  M  A  E  L  S  K  I  V  K  E  L  K  D  H  F  V  S  F  Q  I  N  H  I  Y  R  :  E  F  N  T  E  A  D  A  Q  A  N  L  A  V  Y  L  K   : S  G  E  F  Q  V  E  C  D  K  K  T  T  *  Y  C  E  V  T  N  Y  P  N  L  L  G  G  F  C  E  G  *  M  T  L  K  T  D  A  *  W  I  F  S  G  L  V  F  F  F  C  R  Y  I  I  *  I  I  W  I  R  E  T  S  V  *  G  P  A  R  I  H  Y  S  L  L  T  C  N  G  N  *  L  V  L  *  S  *  L  F  *   </first_frame>
            <second_frame>  K  S  Q  L  L  P  S  L  S  S  S  A  R :   G  G  V  T  C  K  A  K  *  T  R  W  S  W  T  H  K  W  G  T  K  R  M  L  F  M  S  C  I  K  G  M  *  S  L  S  I  R  T  S  V  I  Y  K  L  C  Y  D  L  L :   L  V  N  Q  L  *  V  F  I  K  G  I  T  W  L  S  N  Q  K  S  I  W  H  L  M  D  S  K  M  Q  C  I  L  W  I  S  V  M  F  E  M  I  S  L  G  Y  S  S  H  A  L  F  G :   N  L  A  L  R  K  I  K  L  W  G  R  I  F  R  R  R  G  C  R :   W  R  W  L  H  L  L  R  F  Q  P  L  V  S  K  N  M  P  H  *  T  I  A  *  K  F  P  R  F  R  H  I  V :   P  P  T  Y  S  V  H  A  F  L  S  L  M  G  L  Q  R  G  I  L  D  Q  L  V  L  V  P  C  C  V  L  Q  M  E  V  W :   F  S  G  C  V  K  V  W  V  W  Q  L  T  T  L  L  N  I  E  V  *  S  *  G  *  N  M  L  L  R  K  V  S  N  M  *  K  L  R  V  T  Q  N  S  S  A  C  R :   L  K  E  S  G  N  A  R  T  R  T  W  L  S  Y  P  R  L  *  K  S  L  K  I  I  L  Y  H  S  R  S  T  I  F  T  E :   N  S  T  L  K  L  M  P  R  Q  I  *  P  C  I  L  R  :  V  V  N  F  K  W  N  V  T  R  K  Q  L  N  I  V  K  S  P  T  T  P  T  C  L  G  D  F  V  K  D  E  *  H  S  R  P  M  H  N  G  S  S  L  V  L  F  F  F  F  V  D  I  *  S  E  S  S  G  L  E  K  L  L  F  R  G  L  L  E  S  I  I  L  F  S  L  A  M  E  I  N  *  F  S  K  A  N  Y  S  S  </second_frame>
            <third_frame>   S  P  N  Y  S  L  H  S  L  P  L  L   : V  V  E  *  L  A  K  P  S  K  R  V  G  V  G  H  I  N  G  G  R  K  G  C  F  L  C  R  A  *  R  G  C  D  R  C  L  *  E  P  Q  *  F  T  S  S  A  T  I  F   : C  W  *  T  S  Y  K  C  L  *  R  V  S  P  G  *  A  I  R  R  V  F  G  I  S  W  T  Q  K  C  N  V  F  Y  G  F  Q  *  C  S  R  *  S  L  W  D  T  R  P  M  P  F  S   : A  T  W  L  F  E  R  *  N  Y  G  E  E  S  S  G  E  E  D  A   : D  G  G  G  C  I  S  F  V  F  S  R  W  S  A  K  T  C  H  I  R  Q  L  P  R  N  S  P  D  F  V  I  L   : S  P  L  H  T  V  F  M  H  S  *  V  *  W  G  F  K  G  E  S  W  T  S  W  C  W  C  R  A  A  C  C  R  W  K  Y   : G  F  P  V  A  *  R  C  G  C  G  N  *  Q  R  C  *  I  *  R  C  N  L  R  A  K  I  C  S  *  E  R  F  Q  T  C  K  S  *  G  *  L  K  T  R  L  H  A   : D  S  R  N  L  E  M  Q  E  P  E  H  G  *  A  I  Q  D  C  E  R  A  *  R  S  F  C  I  I  P  D  Q  P  Y  L  Q   : R  I  Q  H  *  S  *  C  P  G  K  F  S  R  V  S  *  E :   W  *  I  S  S  G  M  *  Q  E  N  N  L  I  L  *  S  H  Q  L  P  Q  L  A  W  G  I  L  *  R  M  N  D  T  Q  D  R  C  I  M  D  L  L  W  S  C  F  F  F  L  *  I  Y  N  L  N  H  L  D  *  R  N  F  C  L  G  A  C  S  N  P  L  F  S  S  H  L  Q  W  K  L  I  S  S  L  K  L  T  I  L  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5125" stop="5223"/>
                    <exon start="5445" stop="5603"/>
                    <exon start="7418" stop="7477"/>
                    <exon start="8074" stop="8172"/>
                    <exon start="9476" stop="9583"/>
                    <exon start="9663" stop="9806"/>
                    <exon start="10985" stop="11092"/>
                    <exon start="11522" stop="11573"/>
                    <exon start="11641" stop="11681"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>867</number_coding_nucleotides>
                  <number_encoded_amino_acids>289</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGDEKDAFYVVHKGDVIAVYKNLSDLQALLRSSVGEPAISVYKGYHLAKQSEEYLASHGLKNAMYSMDFSDVRDDLFGILVPCPFRQPGSSKDKIMGKNLPEKRMQMEVVASPSFSAAGQQKHATLDNCLEIPPISSYCPPYIQCSCILEFDGASKGNPGPAGAGAVLRAADGSMVFRLREGVGVATNNVAEYRGVILGLKYALEKGFKHVKVKGDSKLVCMQTQGIWKCKNQNMAELSKIVKELKDHFVSFQINHIYREFNTEADAQANLAVYLKSGEFQVECDKKTT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="4738" e_stop="4783"/>
            <exon e_start="5074" e_stop="5223"/>
            <exon e_start="5445" e_stop="5603"/>
            <exon e_start="7418" e_stop="7477"/>
            <exon e_start="8074" e_stop="8172"/>
            <exon e_start="9491" e_stop="9583"/>
            <exon e_start="9663" e_stop="9806"/>
            <exon e_start="10985" e_stop="11092"/>
            <exon e_start="11522" e_stop="11573"/>
            <exon e_start="11641" e_stop="11914"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.893" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.556" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.740" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="0.616" acc_prob="0.849" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4738" e_stop="4783" e_length="46"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="4784" i_stop="5073" i_length="290"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5074" e_stop="5223" e_length="150"/>
          </exon>
          <intron i_serial="2" don_prob="0.893" acc_prob="1.000">
            <gDNA_intron_boundary i_start="5224" i_stop="5444" i_length="221"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5445" e_stop="5603" e_length="159"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="5604" i_stop="7417" i_length="1814"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7418" e_stop="7477" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.961" acc_prob="0.998">
            <gDNA_intron_boundary i_start="7478" i_stop="8073" i_length="596"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="8074" e_stop="8172" e_length="99"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.556">
            <gDNA_intron_boundary i_start="8173" i_stop="9490" i_length="1318"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="9491" e_stop="9583" e_length="93"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="9584" i_stop="9662" i_length="79"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="9663" e_stop="9806" e_length="144"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.979">
            <gDNA_intron_boundary i_start="9807" i_stop="10984" i_length="1178"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="10985" e_stop="11092" e_length="108"/>
          </exon>
          <intron i_serial="8" don_prob="0.740" acc_prob="0.917">
            <gDNA_intron_boundary i_start="11093" i_stop="11521" i_length="429"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="11522" e_stop="11573" e_length="52"/>
          </exon>
          <intron i_serial="9" don_prob="0.616" acc_prob="0.849">
            <gDNA_intron_boundary i_start="11574" i_stop="11640" i_length="67"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="11641" e_stop="11914" e_length="274"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4738" stop="4783"/>
              <exon start="5074" stop="5223"/>
              <exon start="5445" stop="5603"/>
              <exon start="7418" stop="7477"/>
              <exon start="8074" stop="8172"/>
              <exon start="9491" stop="9583"/>
              <exon start="9663" stop="9806"/>
              <exon start="10985" stop="11092"/>
              <exon start="11522" stop="11551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4763" stop="4783"/>
              <exon start="5074" stop="5223"/>
              <exon start="5445" stop="5603"/>
              <exon start="7418" stop="7477"/>
              <exon start="8074" stop="8138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4768" stop="4783"/>
              <exon start="5074" stop="5223"/>
              <exon start="5445" stop="5603"/>
              <exon start="7418" stop="7477"/>
              <exon start="8074" stop="8172"/>
              <exon start="9491" stop="9568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5089" stop="5223"/>
              <exon start="5445" stop="5603"/>
              <exon start="7418" stop="7477"/>
              <exon start="8074" stop="8172"/>
              <exon start="9491" stop="9583"/>
              <exon start="9663" stop="9806"/>
              <exon start="10985" stop="11029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5095" stop="5223"/>
              <exon start="5445" stop="5468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9562" stop="9583"/>
              <exon start="9663" stop="9806"/>
              <exon start="10985" stop="11092"/>
              <exon start="11522" stop="11573"/>
              <exon start="11641" stop="11914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11005" stop="11092"/>
              <exon start="11522" stop="11573"/>
              <exon start="11641" stop="11892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269900" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTTCCCAAGTCCCAACTACTCCCTTCACTCTCTTCCTCTGCTCG : TGGTGGAGTAACTTGCAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCT : GTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGG : CAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAG : ATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGT : TGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCTGCAGATGGAAGTATG : GTTTTCCGGTTGCGTGAAGGTGTGGGTGTGGCAACTAACAACGTTGCTGAATATAGAGGTGTAATCTTAGGGCTAAAATATGCTCTTGAGAAAGGTTTCAAACATGTAAAAGTTAAGGGTGACTCAAAACTCGTCTGCATGCAG : ACTCAAGGAATCTGGAAATGCAAGAACCAGAACATGGCTGAGCTATCCAAGATTGTGAAAGAGCTTAAAGATCATTTTGTATCATTCCAGATCAACCATATTTACAGA : GAATTCAACACTGAAGCTGATGCCCAGGCAAATTTAGCCGTGTATCTTAAGA : GTGGTGAATTTCAAGTGGAATGTGACAAGAAAACAACTTAATATTGTGAAGTCACCAACTACCCCAACTTGCTTGGGGGATTTTGTGAAGGATGAATGACACTCAAGACCGATGCATAATGGATCTTCTCTGGTCTTGTTTTTTTTTTTTGTAGATATATAATCTGAATCATCTGGATTAGAGAAACTTCTGTTTAGGGGCCTGCTCGAATCCATTATTCTCTTCTCACTTGCAATGGAAATTAATTAGTTCTCTAAAGCTAACTATTCTAGCA</gDNA_template>
            <first_frame> L  F  P  S  P  N  Y  S  L  H  S  L  P  L  L   : V  V  E  *  L  A  K  P  S  K  R  V  G  V  G  H  I  N  G  G  R  K  G  C  F  L  C  R  A  *  R  G  C  D  R  C  L  *  E  P  Q  *  F  T  S  S  A  T  I  F   : C  W  *  T  S  Y  K  C  L  *  R  V  S  P  G  *  A  I  R  R  V  F  G  I  S  W  T  Q  K  C  N  V  F  Y  G  F  Q  *  C  S  R  *  S  L  W  D  T  R  P  M  P  F  S   : A  T  W  L  F  E  R  *  N  Y  G  E  E  S  S  G  E  E  D  A   : D  G  G  G  C  I  S  F  V  F  S  R  W  S  A  K  T  C  H  I  R  Q  L  P  R  N  S  P  D  F  V  I  L   : L  F  M  H  S  *  V  *  W  G  F  K  G  E  S  W  T  S  W  C  W  C  R  A  A  C  C  R  W  K  Y   : G  F  P  V  A  *  R  C  G  C  G  N  *  Q  R  C  *  I  *  R  C  N  L  R  A  K  I  C  S  *  E  R  F  Q  T  C  K  S  *  G  *  L  K  T  R  L  H  A   : D  S  R  N  L  E  M  Q  E  P  E  H  G  *  A  I  Q  D  C  E  R  A  *  R  S  F  C  I  I  P  D  Q  P  Y  L  Q   : R  I  Q  H  *  S  *  C  P  G  K  F  S  R  V  S  *  E :   W  *  I  S  S  G  M  *  Q  E  N  N  L  I  L  *  S  H  Q  L  P  Q  L  A  W  G  I  L  *  R  M  N  D  T  Q  D  R  C  I  M  D  L  L  W  S  C  F  F  F  L  *  I  Y  N  L  N  H  L  D  *  R  N  F  C  L  G  A  C  S  N  P  L  F  S  S  H  L  Q  W  K  L  I  S  S  L  K  L  T  I  L  A </first_frame>
            <second_frame>  S  S  Q  V  P  T  T  P  F  T  L  F  L  C  S  :  W  W  S  N  L  Q  S  Q  V  N  A  L  E  L  D  T  *  M  G  D  E  K  D  A  F  Y  V  V  H  K  G  D  V  I  A  V  Y  K  N  L  S  D  L  Q  A  L  L  R  S  S  :  V  G  E  P  A  I  S  V  Y  K  G  Y  H  L  A  K  Q  S  E  E  Y  L  A  S  H  G  L  K  N  A  M  Y  S  M  D  F  S  D  V  R  D  D  L  F  G  I  L  V  P  C  P  F  R  :  Q  P  G  S  S  K  D  K  I  M  G  K  N  L  P  E  K  R  M  Q  :  M  E  V  V  A  S  P  S  F  S  A  A  G  Q  Q  K  H  A  T  L  D  N  C  L  E  I  P  P  I  S  S  Y  C  :  C  S  C  I  L  E  F  D  G  A  S  K  G  N  P  G  P  A  G  A  G  A  V  L  R  A  A  D  G  S  M  :  V  F  R  L  R  E  G  V  G  V  A  T  N  N  V  A  E  Y  R  G  V  I  L  G  L  K  Y  A  L  E  K  G  F  K  H  V  K  V  K  G  D  S  K  L  V  C  M  Q  :  T  Q  G  I  W  K  C  K  N  Q  N  M  A  E  L  S  K  I  V  K  E  L  K  D  H  F  V  S  F  Q  I  N  H  I  Y  R  :  E  F  N  T  E  A  D  A  Q  A  N  L  A  V  Y  L  K   : S  G  E  F  Q  V  E  C  D  K  K  T  T  *  Y  C  E  V  T  N  Y  P  N  L  L  G  G  F  C  E  G  *  M  T  L  K  T  D  A  *  W  I  F  S  G  L  V  F  F  F  C  R  Y  I  I  *  I  I  W  I  R  E  T  S  V  *  G  P  A  R  I  H  Y  S  L  L  T  C  N  G  N  *  L  V  L  *  S  *  L  F  *   </second_frame>
            <third_frame>   L  P  K  S  Q  L  L  P  S  L  S  S  S  A  R :   G  G  V  T  C  K  A  K  *  T  R  W  S  W  T  H  K  W  G  T  K  R  M  L  F  M  S  C  I  K  G  M  *  S  L  S  I  R  T  S  V  I  Y  K  L  C  Y  D  L  L :   L  V  N  Q  L  *  V  F  I  K  G  I  T  W  L  S  N  Q  K  S  I  W  H  L  M  D  S  K  M  Q  C  I  L  W  I  S  V  M  F  E  M  I  S  L  G  Y  S  S  H  A  L  F  G :   N  L  A  L  R  K  I  K  L  W  G  R  I  F  R  R  R  G  C  R :   W  R  W  L  H  L  L  R  F  Q  P  L  V  S  K  N  M  P  H  *  T  I  A  *  K  F  P  R  F  R  H  I  V :   V  H  A  F  L  S  L  M  G  L  Q  R  G  I  L  D  Q  L  V  L  V  P  C  C  V  L  Q  M  E  V  W :   F  S  G  C  V  K  V  W  V  W  Q  L  T  T  L  L  N  I  E  V  *  S  *  G  *  N  M  L  L  R  K  V  S  N  M  *  K  L  R  V  T  Q  N  S  S  A  C  R :   L  K  E  S  G  N  A  R  T  R  T  W  L  S  Y  P  R  L  *  K  S  L  K  I  I  L  Y  H  S  R  S  T  I  F  T  E :   N  S  T  L  K  L  M  P  R  Q  I  *  P  C  I  L  R  :  V  V  N  F  K  W  N  V  T  R  K  Q  L  N  I  V  K  S  P  T  T  P  T  C  L  G  D  F  V  K  D  E  *  H  S  R  P  M  H  N  G  S  S  L  V  L  F  F  F  F  V  D  I  *  S  E  S  S  G  L  E  K  L  L  F  R  G  L  L  E  S  I  I  L  F  S  L  A  M  E  I  N  *  F  S  K  A  N  Y  S  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5125" stop="5223"/>
                    <exon start="5445" stop="5603"/>
                    <exon start="7418" stop="7477"/>
                    <exon start="8074" stop="8172"/>
                    <exon start="9491" stop="9583"/>
                    <exon start="9663" stop="9806"/>
                    <exon start="10985" stop="11092"/>
                    <exon start="11522" stop="11573"/>
                    <exon start="11641" stop="11681"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>852</number_coding_nucleotides>
                  <number_encoded_amino_acids>284</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGDEKDAFYVVHKGDVIAVYKNLSDLQALLRSSVGEPAISVYKGYHLAKQSEEYLASHGLKNAMYSMDFSDVRDDLFGILVPCPFRQPGSSKDKIMGKNLPEKRMQMEVVASPSFSAAGQQKHATLDNCLEIPPISSYCCSCILEFDGASKGNPGPAGAGAVLRAADGSMVFRLREGVGVATNNVAEYRGVILGLKYALEKGFKHVKVKGDSKLVCMQTQGIWKCKNQNMAELSKIVKELKDHFVSFQINHIYREFNTEADAQANLAVYLKSGEFQVECDKKTT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="12353" e_stop="12748"/>
            <exon e_start="13447" e_stop="14423"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12353" e_stop="12748" e_length="396"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="12749" i_stop="13446" i_length="698"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="13447" e_stop="14423" e_length="977"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12353" stop="12748"/>
              <exon start="13447" stop="13491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12358" stop="12748"/>
              <exon start="13447" stop="13496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12361" stop="12713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13454" stop="14169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13883" stop="14423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13883" stop="14306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266510" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCTTCCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAG : GCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAGGTAAATTGAGTGTGTAAAATTCAAAGCTTCTTCTGGTACATGCTAATTTGTTGACACTTCACAAAACACATTACTTGTCTGCTGCATTTGAGATACAATGTAGTAGCAGTTGCAGGGACTCTGAGTTTTTATTTTTCTGTGTAATATTAATGCTACTTGTGAATCACCAGAAGACTCGCTATTACATTGAAGAGTGAAATAAACAACACAGGTTGTTTACACTTTAAAGGACAAATTAAAGAAAGGAAAACGTTCTGATCTTTCTGAGGGATTTAAACTCTTTTTTTCTTGGAACTAGGCATATCTGAGATCTTATAATCTAGAATCAAAGAATCAGATACAGATATTCATCTGATTCTAGTTTTTCAGAAGCTGCAAGAGAGAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTTACAGGAAATTTCTTTGTAGAAAGTTTACAGCTCAATCAGCATAATGCACCTTAGAGATATATTAAAGTACTAAATTCTGAAGCATGCTTTAGGTTCCTTGTAGTTTCCTACATTCAATATGCAATATAGTGGACAACTTCCAGGTGGACTATCTTGTGCTGCCTTTTTGTGTTTGGAGTTTCTCTATAAATGATAGGAACAGTCTATCTAAATGAACGATATCCTTTAACTTTTCATGGTGAGGGAAAAATAAA</gDNA_template>
            <first_frame> S  F  H  L  *  S  G  F  W  I  R  V  K  N  H  S  E  E  F  A  S  E  K  K  N  M  A  T  V  S  A  F  S  V  C  R  A  K  S  H  S  R  I  P  H  S  S  S  N  A  I  P  Q  L  F  P  M  Q  F  L  R  C  Q  S  N  R  S  I  G  G  G  Y  S  C  S  S  S  S  V  K  A  K  V  P  L  R  T  T  R  I  C  S  A  T  E  E  D  G  A  T  A  V  A  E  E  E  S  A  A  P  T  T  S  D  Q  T  V  S  V  S  V  S  P  S  D  V  L  T  M  F  F  Q  :  A  E  G  T  M  N  E  A  A  I  P  S  V  T  N  S  L  E  V  N  *  V  C  K  I  Q  S  F  F  W  Y  M  L  I  C  *  H  F  T  K  H  I  T  C  L  L  H  L  R  Y  N  V  V  A  V  A  G  T  L  S  F  Y  F  S  V  *  Y  *  C  Y  L  *  I  T  R  R  L  A  I  T  L  K  S  E  I  N  N  T  G  C  L  H  F  K  G  Q  I  K  E  R  K  T  F  *  S  F  *  G  I  *  T  L  F  F  L  E  L  G  I  S  E  I  L  *  S  R  I  K  E  S  D  T  D  I  H  L  I  L  V  F  Q  K  L  Q  E  R  T  I  D  F  V  N  V  *  W  R  A  I  S  L  S  P  P  L  S  K  H  Q  I  L  A  N  N  W  N  *  R  I  I  A  G  C  P  N  *  K  R  K  Q  V  V  V  V  *  P  L  S  S  V  H  M  Y  T  G  Y  *  R  H  Y  R  S  Q  N  S  S  C  R  G  H  C  K  C  R  G  D  S  H  I  *  C  F  S  Y  I  D  L  L  A  Y  S  V  T  G  N  F  F  V  E  S  L  Q  L  N  Q  H  N  A  P  *  R  Y  I  K  V  L  N  S  E  A  C  F  R  F  L  V  V  S  Y  I  Q  Y  A  I  *  W  T  T  S  R  W  T  I  L  C  C  L  F  V  F  G  V  S  L  *  M  I  G  T  V  Y  L  N  E  R  Y  P  L  T  F  H  G  E  G  K  I   </first_frame>
            <second_frame>  P  S  I  C  N  L  A  S  G  *  E  *  K  I  T  L  R  N  L  R  R  K  K  K  I  W  R  P  S  Q  H  F  P  F  V  E  P  N  L  I  L  E  F  P  I  L  H  L  M  Q  F  P  S  F  S  Q  C  N  F  F  G  V  K  A  T  G  A  L  A  V  V  I  L  A  L  Q  V  R  *  K  R  R  Y  L  *  E  L  P  G  Y  V  L  Q  L  R  K  M  V  L  L  L  L  P  K  K  N  L  L  L  P  L  H  L  I  K  L  F  L  F  P  S  P  L  P  T  F  *  L  C  S  F  R :   Q  K  E  Q  *  M  K  L  L  F  L  P  *  L  T  L  *  R  *  I  E  C  V  K  F  K  A  S  S  G  T  C  *  F  V  D  T  S  Q  N  T  L  L  V  C  C  I  *  D  T  M  *  *  Q  L  Q  G  L  *  V  F  I  F  L  C  N  I  N  A  T  C  E  S  P  E  D  S  L  L  H  *  R  V  K  *  T  T  Q  V  V  Y  T  L  K  D  K  L  K  K  G  K  R  S  D  L  S  E  G  F  K  L  F  F  S  W  N  *  A  Y  L  R  S  Y  N  L  E  S  K  N  Q  I  Q  I  F  I  *  F  *  F  F  R  S  C  K  R  E  L  L  I  L  *  M  F  D  G  E  L  Y  L  F  L  H  L  Y  Q  N  I  R  F  *  L  I  I  G  I  E  E  *  L  Q  V  A  L  I  K  K  E  N  K  *  L  *  F  D  L  Y  R  L  S  I  C  I  Q  D  I  E  G  I  T  G  L  K  I  Q  V  V  E  G  I  A  S  V  E  V  I  H  I  Y  N  A  S  L  T  L  T  Y  *  P  I  L  L  Q  E  I  S  L  *  K  V  Y  S  S  I  S  I  M  H  L  R  D  I  L  K  Y  *  I  L  K  H  A  L  G  S  L  *  F  P  T  F  N  M  Q  Y  S  G  Q  L  P  G  G  L  S  C  A  A  F  L  C  L  E  F  L  Y  K  *  *  E  Q  S  I  *  M  N  D  I  L  *  L  F  M  V  R  E  K  *  </second_frame>
            <third_frame>   L  P  F  V  I  W  L  L  D  K  S  E  K  S  L  *  G  I  C  V  G  K  K  K  Y  G  D  R  L  S  I  F  R  L  *  S  Q  I  S  F  S  N  S  P  F  F  I  *  C  N  S  P  A  F  P  N  A  I  S  S  V  S  K  Q  Q  E  H  W  R  W  L  F  L  L  F  K  F  G  E  S  E  G  T  F  E  N  Y  Q  D  M  F  C  N  *  G  R  W  C  Y  C  C  C  R  R  R  I  C  C  S  H  Y  I  *  S  N  C  F  C  F  R  L  P  F  R  R  S  N  Y  V  L  S   : G  R  R  N  N  E  *  S  C  Y  S  F  R  D  *  L  F  R  G  K  L  S  V  *  N  S  K  L  L  L  V  H  A  N  L  L  T  L  H  K  T  H  Y  L  S  A  A  F  E  I  Q  C  S  S  S  C  R  D  S  E  F  L  F  F  C  V  I  L  M  L  L  V  N  H  Q  K  T  R  Y  Y  I  E  E  *  N  K  Q  H  R  L  F  T  L  *  R  T  N  *  R  K  E  N  V  L  I  F  L  R  D  L  N  S  F  F  L  G  T  R  H  I  *  D  L  I  I  *  N  Q  R  I  R  Y  R  Y  S  S  D  S  S  F  S  E  A  A  R  E  N  Y  *  F  C  E  C  L  M  E  S  Y  I  S  F  S  T  S  I  K  T  S  D  F  S  *  *  L  E  L  K  N  N  C  R  L  P  *  L  K  K  K  T  S  S  C  S  L  T  F  I  V  C  P  Y  V  Y  R  I  L  K  A  L  Q  V  S  K  F  K  L  S  R  A  L  Q  V  S  R  *  F  T  Y  I  M  L  L  L  H  *  L  I  S  L  F  C  Y  R  K  F  L  C  R  K  F  T  A  Q  S  A  *  C  T  L  E  I  Y  *  S  T  K  F  *  S  M  L  *  V  P  C  S  F  L  H  S  I  C  N  I  V  D  N  F  Q  V  D  Y  L  V  L  P  F  C  V  W  S  F  S  I  N  D  R  N  S  L  S  K  *  T  I  S  F  N  F  S  W  *  G  K  N  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12368" stop="12748"/>
                    <exon start="13447" stop="13509"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>441</number_coding_nucleotides>
                  <number_encoded_amino_acids>147</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGFWIRVKNHSEEFASEKKNMATVSAFSVCRAKSHSRIPHSSSNAIPQLFPMQFLRCQSNRSIGGGYSCSSSSVKAKVPLRTTRICSATEEDGATAVAEEESAAPTTSDQTVSVSVSPSDVLTMFFQAEGTMNEAAIPSVTNSLEVN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="10981" e_stop="11092"/>
            <exon e_start="11522" e_stop="11573"/>
            <exon e_start="11641" e_stop="11916"/>
            <exon e_start="12138" e_stop="12165"/>
            <exon e_start="13447" e_stop="14423"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.740" acc_prob="0.917" e_score="0.989"/>
          <exon-intron don_prob="0.616" acc_prob="0.849" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.998" e_score="0.786"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="10981" e_stop="11092" e_length="112"/>
          </exon>
          <intron i_serial="1" don_prob="0.740" acc_prob="0.917">
            <gDNA_intron_boundary i_start="11093" i_stop="11521" i_length="429"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11522" e_stop="11573" e_length="52"/>
          </exon>
          <intron i_serial="2" don_prob="0.616" acc_prob="0.849">
            <gDNA_intron_boundary i_start="11574" i_stop="11640" i_length="67"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11641" e_stop="11916" e_length="276"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="11917" i_stop="12137" i_length="221"/>
          </intron>
          <exon e_serial="4" e_score="0.786">
            <gDNA_exon_boundary e_start="12138" e_stop="12165" e_length="28"/>
          </exon>
          <intron i_serial="4" don_prob="0.949" acc_prob="0.998">
            <gDNA_intron_boundary i_start="12166" i_stop="13446" i_length="1281"/>
          </intron>
          <exon e_serial="5" e_score="0.999">
            <gDNA_exon_boundary e_start="13447" e_stop="14423" e_length="977"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10981" stop="11092"/>
              <exon start="11522" stop="11573"/>
              <exon start="11641" stop="11916"/>
              <exon start="12138" stop="12165"/>
              <exon start="13447" stop="13460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578376" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11005" stop="11092"/>
              <exon start="11522" stop="11573"/>
              <exon start="11641" stop="11892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269900" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13454" stop="14169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13883" stop="14423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13883" stop="14306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266510" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAGACTCAAGGAATCTGGAAATGCAAGAACCAGAACATGGCTGAGCTATCCAAGATTGTGAAAGAGCTTAAAGATCATTTTGTATCATTCCAGATCAACCATATTTACAGA : GAATTCAACACTGAAGCTGATGCCCAGGCAAATTTAGCCGTGTATCTTAAGA : GTGGTGAATTTCAAGTGGAATGTGACAAGAAAACAACTTAATATTGTGAAGTCACCAACTACCCCAACTTGCTTGGGGGATTTTGTGAAGGATGAATGACACTCAAGACCGATGCATAATGGATCTTCTCTGGTCTTGTTTTTTTTTTTTGTAGATATATAATCTGAATCATCTGGATTAGAGAAACTTCTGTTTAGGGGCCTGCTCGAATCCATTATTCTCTTCTCACTTGCAATGGAAATTAATTAGTTCTCTAAAGCTAACTATTCTAGCACT : CTCAAAAAAAAAATAAAAAAACTACATT : GCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAGGTAAATTGAGTGTGTAAAATTCAAAGCTTCTTCTGGTACATGCTAATTTGTTGACACTTCACAAAACACATTACTTGTCTGCTGCATTTGAGATACAATGTAGTAGCAGTTGCAGGGACTCTGAGTTTTTATTTTTCTGTGTAATATTAATGCTACTTGTGAATCACCAGAAGACTCGCTATTACATTGAAGAGTGAAATAAACAACACAGGTTGTTTACACTTTAAAGGACAAATTAAAGAAAGGAAAACGTTCTGATCTTTCTGAGGGATTTAAACTCTTTTTTTCTTGGAACTAGGCATATCTGAGATCTTATAATCTAGAATCAAAGAATCAGATACAGATATTCATCTGATTCTAGTTTTTCAGAAGCTGCAAGAGAGAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTTACAGGAAATTTCTTTGTAGAAAGTTTACAGCTCAATCAGCATAATGCACCTTAGAGATATATTAAAGTACTAAATTCTGAAGCATGCTTTAGGTTCCTTGTAGTTTCCTACATTCAATATGCAATATAGTGGACAACTTCCAGGTGGACTATCTTGTGCTGCCTTTTTGTGTTTGGAGTTTCTCTATAAATGATAGGAACAGTCTATCTAAATGAACGATATCCTTTAACTTTTCATGGTGAGGGAAAAATAAA</gDNA_template>
            <first_frame> T  D  S  R  N  L  E  M  Q  E  P  E  H  G  *  A  I  Q  D  C  E  R  A  *  R  S  F  C  I  I  P  D  Q  P  Y  L  Q   : R  I  Q  H  *  S  *  C  P  G  K  F  S  R  V  S  *  E :   W  *  I  S  S  G  M  *  Q  E  N  N  L  I  L  *  S  H  Q  L  P  Q  L  A  W  G  I  L  *  R  M  N  D  T  Q  D  R  C  I  M  D  L  L  W  S  C  F  F  F  L  *  I  Y  N  L  N  H  L  D  *  R  N  F  C  L  G  A  C  S  N  P  L  F  S  S  H  L  Q  W  K  L  I  S  S  L  K  L  T  I  L  A  L :   S  K  K  K  *  K  N  Y  I  :  A  E  G  T  M  N  E  A  A  I  P  S  V  T  N  S  L  E  V  N  *  V  C  K  I  Q  S  F  F  W  Y  M  L  I  C  *  H  F  T  K  H  I  T  C  L  L  H  L  R  Y  N  V  V  A  V  A  G  T  L  S  F  Y  F  S  V  *  Y  *  C  Y  L  *  I  T  R  R  L  A  I  T  L  K  S  E  I  N  N  T  G  C  L  H  F  K  G  Q  I  K  E  R  K  T  F  *  S  F  *  G  I  *  T  L  F  F  L  E  L  G  I  S  E  I  L  *  S  R  I  K  E  S  D  T  D  I  H  L  I  L  V  F  Q  K  L  Q  E  R  T  I  D  F  V  N  V  *  W  R  A  I  S  L  S  P  P  L  S  K  H  Q  I  L  A  N  N  W  N  *  R  I  I  A  G  C  P  N  *  K  R  K  Q  V  V  V  V  *  P  L  S  S  V  H  M  Y  T  G  Y  *  R  H  Y  R  S  Q  N  S  S  C  R  G  H  C  K  C  R  G  D  S  H  I  *  C  F  S  Y  I  D  L  L  A  Y  S  V  T  G  N  F  F  V  E  S  L  Q  L  N  Q  H  N  A  P  *  R  Y  I  K  V  L  N  S  E  A  C  F  R  F  L  V  V  S  Y  I  Q  Y  A  I  *  W  T  T  S  R  W  T  I  L  C  C  L  F  V  F  G  V  S  L  *  M  I  G  T  V  Y  L  N  E  R  Y  P  L  T  F  H  G  E  G  K  I   </first_frame>
            <second_frame>  Q  T  Q  G  I  W  K  C  K  N  Q  N  M  A  E  L  S  K  I  V  K  E  L  K  D  H  F  V  S  F  Q  I  N  H  I  Y  R  :  E  F  N  T  E  A  D  A  Q  A  N  L  A  V  Y  L  K   : S  G  E  F  Q  V  E  C  D  K  K  T  T  *  Y  C  E  V  T  N  Y  P  N  L  L  G  G  F  C  E  G  *  M  T  L  K  T  D  A  *  W  I  F  S  G  L  V  F  F  F  C  R  Y  I  I  *  I  I  W  I  R  E  T  S  V  *  G  P  A  R  I  H  Y  S  L  L  T  C  N  G  N  *  L  V  L  *  S  *  L  F  *  H   : S  Q  K  K  N  K  K  T  T  L :   Q  K  E  Q  *  M  K  L  L  F  L  P  *  L  T  L  *  R  *  I  E  C  V  K  F  K  A  S  S  G  T  C  *  F  V  D  T  S  Q  N  T  L  L  V  C  C  I  *  D  T  M  *  *  Q  L  Q  G  L  *  V  F  I  F  L  C  N  I  N  A  T  C  E  S  P  E  D  S  L  L  H  *  R  V  K  *  T  T  Q  V  V  Y  T  L  K  D  K  L  K  K  G  K  R  S  D  L  S  E  G  F  K  L  F  F  S  W  N  *  A  Y  L  R  S  Y  N  L  E  S  K  N  Q  I  Q  I  F  I  *  F  *  F  F  R  S  C  K  R  E  L  L  I  L  *  M  F  D  G  E  L  Y  L  F  L  H  L  Y  Q  N  I  R  F  *  L  I  I  G  I  E  E  *  L  Q  V  A  L  I  K  K  E  N  K  *  L  *  F  D  L  Y  R  L  S  I  C  I  Q  D  I  E  G  I  T  G  L  K  I  Q  V  V  E  G  I  A  S  V  E  V  I  H  I  Y  N  A  S  L  T  L  T  Y  *  P  I  L  L  Q  E  I  S  L  *  K  V  Y  S  S  I  S  I  M  H  L  R  D  I  L  K  Y  *  I  L  K  H  A  L  G  S  L  *  F  P  T  F  N  M  Q  Y  S  G  Q  L  P  G  G  L  S  C  A  A  F  L  C  L  E  F  L  Y  K  *  *  E  Q  S  I  *  M  N  D  I  L  *  L  F  M  V  R  E  K  *  </second_frame>
            <third_frame>   R  L  K  E  S  G  N  A  R  T  R  T  W  L  S  Y  P  R  L  *  K  S  L  K  I  I  L  Y  H  S  R  S  T  I  F  T  E :   N  S  T  L  K  L  M  P  R  Q  I  *  P  C  I  L  R  :  V  V  N  F  K  W  N  V  T  R  K  Q  L  N  I  V  K  S  P  T  T  P  T  C  L  G  D  F  V  K  D  E  *  H  S  R  P  M  H  N  G  S  S  L  V  L  F  F  F  F  V  D  I  *  S  E  S  S  G  L  E  K  L  L  F  R  G  L  L  E  S  I  I  L  F  S  L  A  M  E  I  N  *  F  S  K  A  N  Y  S  S  T  :  L  K  K  K  I  K  K  L  H   : C  R  R  N  N  E  *  S  C  Y  S  F  R  D  *  L  F  R  G  K  L  S  V  *  N  S  K  L  L  L  V  H  A  N  L  L  T  L  H  K  T  H  Y  L  S  A  A  F  E  I  Q  C  S  S  S  C  R  D  S  E  F  L  F  F  C  V  I  L  M  L  L  V  N  H  Q  K  T  R  Y  Y  I  E  E  *  N  K  Q  H  R  L  F  T  L  *  R  T  N  *  R  K  E  N  V  L  I  F  L  R  D  L  N  S  F  F  L  G  T  R  H  I  *  D  L  I  I  *  N  Q  R  I  R  Y  R  Y  S  S  D  S  S  F  S  E  A  A  R  E  N  Y  *  F  C  E  C  L  M  E  S  Y  I  S  F  S  T  S  I  K  T  S  D  F  S  *  *  L  E  L  K  N  N  C  R  L  P  *  L  K  K  K  T  S  S  C  S  L  T  F  I  V  C  P  Y  V  Y  R  I  L  K  A  L  Q  V  S  K  F  K  L  S  R  A  L  Q  V  S  R  *  F  T  Y  I  M  L  L  L  H  *  L  I  S  L  F  C  Y  R  K  F  L  C  R  K  F  T  A  Q  S  A  *  C  T  L  E  I  Y  *  S  T  K  F  *  S  M  L  *  V  P  C  S  F  L  H  S  I  C  N  I  V  D  N  F  Q  V  D  Y  L  V  L  P  F  C  V  W  S  F  S  I  N  D  R  N  S  L  S  K  *  T  I  S  F  N  F  S  W  *  G  K  N  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10982" stop="11092"/>
                    <exon start="11522" stop="11573"/>
                    <exon start="11641" stop="11681"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QTQGIWKCKNQNMAELSKIVKELKDHFVSFQINHIYREFNTEADAQANLAVYLKSGEFQVECDKKTT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="12353" e_stop="12748"/>
            <exon e_start="13447" e_stop="13500"/>
            <exon e_start="15074" e_stop="15171"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12353" e_stop="12748" e_length="396"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="12749" i_stop="13446" i_length="698"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="13447" e_stop="13500" e_length="54"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.985">
            <gDNA_intron_boundary i_start="13501" i_stop="15073" i_length="1573"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="15074" e_stop="15171" e_length="98"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12353" stop="12748"/>
              <exon start="13447" stop="13491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12358" stop="12748"/>
              <exon start="13447" stop="13496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12361" stop="12713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12388" stop="12748"/>
              <exon start="13447" stop="13500"/>
              <exon start="15074" stop="15171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596861" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="6" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCTTCCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAG : GCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAG : TTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTTGGTTGAAACAATACAAGGTTCAGGCTTCAAGTTGCAAACATTGAATCTGAG</gDNA_template>
            <first_frame> S  F  H  L  *  S  G  F  W  I  R  V  K  N  H  S  E  E  F  A  S  E  K  K  N  M  A  T  V  S  A  F  S  V  C  R  A  K  S  H  S  R  I  P  H  S  S  S  N  A  I  P  Q  L  F  P  M  Q  F  L  R  C  Q  S  N  R  S  I  G  G  G  Y  S  C  S  S  S  S  V  K  A  K  V  P  L  R  T  T  R  I  C  S  A  T  E  E  D  G  A  T  A  V  A  E  E  E  S  A  A  P  T  T  S  D  Q  T  V  S  V  S  V  S  P  S  D  V  L  T  M  F  F  Q  :  A  E  G  T  M  N  E  A  A  I  P  S  V  T  N  S  L  E  :  L  T  K  Q  T  T  I  Q  A  T  G  V  A  S  S  L  V  E  T  I  Q  G  S  G  F  K  L  Q  T  L  N  L   </first_frame>
            <second_frame>  P  S  I  C  N  L  A  S  G  *  E  *  K  I  T  L  R  N  L  R  R  K  K  K  I  W  R  P  S  Q  H  F  P  F  V  E  P  N  L  I  L  E  F  P  I  L  H  L  M  Q  F  P  S  F  S  Q  C  N  F  F  G  V  K  A  T  G  A  L  A  V  V  I  L  A  L  Q  V  R  *  K  R  R  Y  L  *  E  L  P  G  Y  V  L  Q  L  R  K  M  V  L  L  L  L  P  K  K  N  L  L  L  P  L  H  L  I  K  L  F  L  F  P  S  P  L  P  T  F  *  L  C  S  F  R :   Q  K  E  Q  *  M  K  L  L  F  L  P  *  L  T  L  *  S :   *  Q  S  K  R  Q  Y  K  L  Q  G  W  L  Q  V  W  L  K  Q  Y  K  V  Q  A  S  S  C  K  H  *  I  *  </second_frame>
            <third_frame>   L  P  F  V  I  W  L  L  D  K  S  E  K  S  L  *  G  I  C  V  G  K  K  K  Y  G  D  R  L  S  I  F  R  L  *  S  Q  I  S  F  S  N  S  P  F  F  I  *  C  N  S  P  A  F  P  N  A  I  S  S  V  S  K  Q  Q  E  H  W  R  W  L  F  L  L  F  K  F  G  E  S  E  G  T  F  E  N  Y  Q  D  M  F  C  N  *  G  R  W  C  Y  C  C  C  R  R  R  I  C  C  S  H  Y  I  *  S  N  C  F  C  F  R  L  P  F  R  R  S  N  Y  V  L  S   : G  R  R  N  N  E  *  S  C  Y  S  F  R  D  *  L  F  R   : V  N  K  A  N  D  N  T  S  Y  R  G  G  F  K  F  G  *  N  N  T  R  F  R  L  Q  V  A  N  I  E  S  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12368" stop="12748"/>
                    <exon start="13447" stop="13500"/>
                    <exon start="15074" stop="15169"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGFWIRVKNHSEEFASEKKNMATVSAFSVCRAKSHSRIPHSSSNAIPQLFPMQFLRCQSNRSIGGGYSCSSSSVKAKVPLRTTRICSATEEDGATAVAEEESAAPTTSDQTVSVSVSPSDVLTMFFQAEGTMNEAAIPSVTNSLELTKQTTIQATGVASSLVETIQGSGFKLQTLNL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="4751" e_stop="4783"/>
            <exon e_start="5074" e_stop="5223"/>
            <exon e_start="5445" e_stop="5603"/>
            <exon e_start="7418" e_stop="7477"/>
            <exon e_start="8074" e_stop="8172"/>
            <exon e_start="9476" e_stop="9751"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.893" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.767" e_score="1.000"/>
          <exon-only e_score="0.967"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4751" e_stop="4783" e_length="33"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="4784" i_stop="5073" i_length="290"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5074" e_stop="5223" e_length="150"/>
          </exon>
          <intron i_serial="2" don_prob="0.893" acc_prob="1.000">
            <gDNA_intron_boundary i_start="5224" i_stop="5444" i_length="221"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5445" e_stop="5603" e_length="159"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="5604" i_stop="7417" i_length="1814"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7418" e_stop="7477" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.961" acc_prob="0.998">
            <gDNA_intron_boundary i_start="7478" i_stop="8073" i_length="596"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="8074" e_stop="8172" e_length="99"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.767">
            <gDNA_intron_boundary i_start="8173" i_stop="9475" i_length="1303"/>
          </intron>
          <exon e_serial="6" e_score="0.967">
            <gDNA_exon_boundary e_start="9476" e_stop="9751" e_length="276"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4751" stop="4783"/>
              <exon start="5074" stop="5223"/>
              <exon start="5445" stop="5603"/>
              <exon start="7418" stop="7477"/>
              <exon start="8074" stop="8172"/>
              <exon start="9476" stop="9568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4763" stop="4783"/>
              <exon start="5074" stop="5223"/>
              <exon start="5445" stop="5603"/>
              <exon start="7418" stop="7477"/>
              <exon start="8074" stop="8172"/>
              <exon start="9476" stop="9751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4763" stop="4783"/>
              <exon start="5074" stop="5223"/>
              <exon start="5445" stop="5603"/>
              <exon start="7418" stop="7477"/>
              <exon start="8074" stop="8138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5095" stop="5223"/>
              <exon start="5445" stop="5468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456375" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="7" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCAACTACTCCCTTCACTCTCTTCCTCTGCTCG : TGGTGGAGTAACTTGCAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCT : GTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGG : CAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAG : ATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGT : CCCCCCTACATACAGTGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCTGCAGATGGAAGTATGGTATGCTCCCTTTCCATTTAGGAGATGTGGTTTGTCACCATAAATTTACAGGTTTTCGACTTGTAGTTCTTTTCTGTAGGTTTTCCGGTTGCGTGAAGGTGTGGGTGTGGCAACTAACAACGTTGCTGAATATAGAGGTGTAATCTTAGGGCTAAAATATGCTCTTGA</gDNA_template>
            <first_frame> P  T  T  P  F  T  L  F  L  C  S  :  W  W  S  N  L  Q  S  Q  V  N  A  L  E  L  D  T  *  M  G  D  E  K  D  A  F  Y  V  V  H  K  G  D  V  I  A  V  Y  K  N  L  S  D  L  Q  A  L  L  R  S  S  :  V  G  E  P  A  I  S  V  Y  K  G  Y  H  L  A  K  Q  S  E  E  Y  L  A  S  H  G  L  K  N  A  M  Y  S  M  D  F  S  D  V  R  D  D  L  F  G  I  L  V  P  C  P  F  R  :  Q  P  G  S  S  K  D  K  I  M  G  K  N  L  P  E  K  R  M  Q  :  M  E  V  V  A  S  P  S  F  S  A  A  G  Q  Q  K  H  A  T  L  D  N  C  L  E  I  P  P  I  S  S  Y  C  :  P  P  Y  I  Q  C  S  C  I  L  E  F  D  G  A  S  K  G  N  P  G  P  A  G  A  G  A  V  L  R  A  A  D  G  S  M  V  C  S  L  S  I  *  E  M  W  F  V  T  I  N  L  Q  V  F  D  L  *  F  F  S  V  G  F  P  V  A  *  R  C  G  C  G  N  *  Q  R  C  *  I  *  R  C  N  L  R  A  K  I  C  S  * </first_frame>
            <second_frame>  Q  L  L  P  S  L  S  S  S  A  R :   G  G  V  T  C  K  A  K  *  T  R  W  S  W  T  H  K  W  G  T  K  R  M  L  F  M  S  C  I  K  G  M  *  S  L  S  I  R  T  S  V  I  Y  K  L  C  Y  D  L  L :   L  V  N  Q  L  *  V  F  I  K  G  I  T  W  L  S  N  Q  K  S  I  W  H  L  M  D  S  K  M  Q  C  I  L  W  I  S  V  M  F  E  M  I  S  L  G  Y  S  S  H  A  L  F  G :   N  L  A  L  R  K  I  K  L  W  G  R  I  F  R  R  R  G  C  R :   W  R  W  L  H  L  L  R  F  Q  P  L  V  S  K  N  M  P  H  *  T  I  A  *  K  F  P  R  F  R  H  I  V :   P  P  T  Y  S  V  H  A  F  L  S  L  M  G  L  Q  R  G  I  L  D  Q  L  V  L  V  P  C  C  V  L  Q  M  E  V  W  Y  A  P  F  P  F  R  R  C  G  L  S  P  *  I  Y  R  F  S  T  C  S  S  F  L  *  V  F  R  L  R  E  G  V  G  V  A  T  N  N  V  A  E  Y  R  G  V  I  L  G  L  K  Y  A  L   </second_frame>
            <third_frame>   N  Y  S  L  H  S  L  P  L  L   : V  V  E  *  L  A  K  P  S  K  R  V  G  V  G  H  I  N  G  G  R  K  G  C  F  L  C  R  A  *  R  G  C  D  R  C  L  *  E  P  Q  *  F  T  S  S  A  T  I  F   : C  W  *  T  S  Y  K  C  L  *  R  V  S  P  G  *  A  I  R  R  V  F  G  I  S  W  T  Q  K  C  N  V  F  Y  G  F  Q  *  C  S  R  *  S  L  W  D  T  R  P  M  P  F  S   : A  T  W  L  F  E  R  *  N  Y  G  E  E  S  S  G  E  E  D  A   : D  G  G  G  C  I  S  F  V  F  S  R  W  S  A  K  T  C  H  I  R  Q  L  P  R  N  S  P  D  F  V  I  L   : S  P  L  H  T  V  F  M  H  S  *  V  *  W  G  F  K  G  E  S  W  T  S  W  C  W  C  R  A  A  C  C  R  W  K  Y  G  M  L  P  F  H  L  G  D  V  V  C  H  H  K  F  T  G  F  R  L  V  V  L  F  C  R  F  S  G  C  V  K  V  W  V  W  Q  L  T  T  L  L  N  I  E  V  *  S  *  G  *  N  M  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5125" stop="5223"/>
                    <exon start="5445" stop="5603"/>
                    <exon start="7418" stop="7477"/>
                    <exon start="8074" stop="8172"/>
                    <exon start="9476" stop="9604"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>543</number_coding_nucleotides>
                  <number_encoded_amino_acids>181</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGDEKDAFYVVHKGDVIAVYKNLSDLQALLRSSVGEPAISVYKGYHLAKQSEEYLASHGLKNAMYSMDFSDVRDDLFGILVPCPFRQPGSSKDKIMGKNLPEKRMQMEVVASPSFSAAGQQKHATLDNCLEIPPISSYCPPYIQCSCILEFDGASKGNPGPAGAGAVLRAADGSMVCSLSI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="8">
          <exon_coordinates>
            <exon e_start="8185" e_stop="8642"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8185" e_stop="8642" e_length="458"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8185" stop="8642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315770" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="8" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTACCTAACAATTCTTTGTATCAATACGTTTAAATTCTTGTCATTGTCTGCTTTATCTGGATGTTGACATTCTTGGGGTGGGGTGAGGGTGGTGATTTGGTGGGTGGTTAGCCTTGGAAAGGGCTTGCTCCTATGTTTTGACTTTATTCTGCTGCTGGCCGAAACTAGTGAGGATAGTGATGCGTATTGGAGCTGATTTGGAAAATAAAAGGTTGAGAAGTCCTGATTCGGCAACCACTGATCCAAGGGGGACCAAGTGATTCTTAAATCAAACTGTAAGGGCAAAGTGGAACATTGTTGGTTAACGTTGCGCAAAAGTCCAAAGTTGGAAGATGGTGACAAAATTTATATGTAATCTATGTTGCTGGGATTCTCCAAGAAATAGTGCTGCACCCATGCTAGATCCTCCAAAATGCACTACTTTTGAAGGATTCGACATGCTCTCATCAACATTTT</gDNA_template>
            <first_frame> F  Y  L  T  I  L  C  I  N  T  F  K  F  L  S  L  S  A  L  S  G  C  *  H  S  W  G  G  V  R  V  V  I  W  W  V  V  S  L  G  K  G  L  L  L  C  F  D  F  I  L  L  L  A  E  T  S  E  D  S  D  A  Y  W  S  *  F  G  K  *  K  V  E  K  S  *  F  G  N  H  *  S  K  G  D  Q  V  I  L  K  S  N  C  K  G  K  V  E  H  C  W  L  T  L  R  K  S  P  K  L  E  D  G  D  K  I  Y  M  *  S  M  L  L  G  F  S  K  K  *  C  C  T  H  A  R  S  S  K  M  H  Y  F  *  R  I  R  H  A  L  I  N  I   </first_frame>
            <second_frame>  F  T  *  Q  F  F  V  S  I  R  L  N  S  C  H  C  L  L  Y  L  D  V  D  I  L  G  V  G  *  G  W  *  F  G  G  W  L  A  L  E  R  A  C  S  Y  V  L  T  L  F  C  C  W  P  K  L  V  R  I  V  M  R  I  G  A  D  L  E  N  K  R  L  R  S  P  D  S  A  T  T  D  P  R  G  T  K  *  F  L  N  Q  T  V  R  A  K  W  N  I  V  G  *  R  C  A  K  V  Q  S  W  K  M  V  T  K  F  I  C  N  L  C  C  W  D  S  P  R  N  S  A  A  P  M  L  D  P  P  K  C  T  T  F  E  G  F  D  M  L  S  S  T  F  </second_frame>
            <third_frame>   L  P  N  N  S  L  Y  Q  Y  V  *  I  L  V  I  V  C  F  I  W  M  L  T  F  L  G  W  G  E  G  G  D  L  V  G  G  *  P  W  K  G  L  A  P  M  F  *  L  Y  S  A  A  G  R  N  *  *  G  *  *  C  V  L  E  L  I  W  K  I  K  G  *  E  V  L  I  R  Q  P  L  I  Q  G  G  P  S  D  S  *  I  K  L  *  G  Q  S  G  T  L  L  V  N  V  A  Q  K  S  K  V  G  R  W  *  Q  N  L  Y  V  I  Y  V  A  G  I  L  Q  E  I  V  L  H  P  C  *  I  L  Q  N  A  L  L  L  K  D  S  T  C  S  H  Q  H  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0189G15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="18805" PGL_stop="21274"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18805" e_stop="18829"/>
            <exon e_start="18934" e_stop="19008"/>
            <exon e_start="19160" e_stop="19226"/>
            <exon e_start="19608" e_stop="19930"/>
            <exon e_start="21239" e_stop="21274"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.881" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.983" e_score="0.973"/>
          <exon-intron don_prob="0.990" acc_prob="0.854" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.995" e_score="0.972"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="18805" e_stop="18829" e_length="25"/>
          </exon>
          <intron i_serial="1" don_prob="0.881" acc_prob="0.966">
            <gDNA_intron_boundary i_start="18830" i_stop="18933" i_length="104"/>
          </intron>
          <exon e_serial="2" e_score="0.973">
            <gDNA_exon_boundary e_start="18934" e_stop="19008" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.983">
            <gDNA_intron_boundary i_start="19009" i_stop="19159" i_length="151"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="19160" e_stop="19226" e_length="67"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.854">
            <gDNA_intron_boundary i_start="19227" i_stop="19607" i_length="381"/>
          </intron>
          <exon e_serial="4" e_score="0.972">
            <gDNA_exon_boundary e_start="19608" e_stop="19930" e_length="323"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.995">
            <gDNA_intron_boundary i_start="19931" i_stop="21238" i_length="1308"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="21239" e_stop="21274" e_length="36"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18805" stop="18829"/>
              <exon start="18934" stop="19008"/>
              <exon start="19160" stop="19226"/>
              <exon start="19608" stop="19930"/>
              <exon start="21239" stop="21274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365769" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAAGCTGACATAGCACCACTGATG : TCCACTCTTCTTGGTCTGCCATGTCCTATCAACTCAGTTGGCAATCTGCCTCTTCAGTACATGAATCTGAACAAG : GCAGAAGAAGTTGAAGCTGTGCTGGCCAATACGAAGCAAATCCTCAATCAGTTCCTTCGAAAGTCAC : AGTTAAAGCAGTCGACCTCATTATACATCAAGCCTTTCAAGCCCTTGGCTAGTTATTCATCACTATTGCGTGAAATTGAGCAACTGATTTCTCTCAAAGAGTATGAAACTGCAGTGAAATTATCTGAACATCTTAGGAGCTTGGCACTTCAAGGACTTCACTATTTTCAGACATATGATTGGCTGATGCTGATGACTGTAATCACTCTTGGCTATGTTGGTTGGATGATCTATGTCATACTCCATATCTTGCAATCTTATACATCCCTACCTGCAAATATTTTTAGCAAGGACCAAGTGCCTAATCCAAGAAGTACAGTTAAG : ATACATCTTTTAGGAGGGTTGTTGATGGGAGTAGCG</gDNA_template>
            <first_frame> S  S  *  H  S  T  T  D   : V  H  S  S  W  S  A  M  S  Y  Q  L  S  W  Q  S  A  S  S  V  H  E  S  E  Q   : G  R  R  S  *  S  C  A  G  Q  Y  E  A  N  P  Q  S  V  P  S  K  V  T :   V  K  A  V  D  L  I  I  H  Q  A  F  Q  A  L  G  *  L  F  I  T  I  A  *  N  *  A  T  D  F  S  Q  R  V  *  N  C  S  E  I  I  *  T  S  *  E  L  G  T  S  R  T  S  L  F  S  D  I  *  L  A  D  A  D  D  C  N  H  S  W  L  C  W  L  D  D  L  C  H  T  P  Y  L  A  I  L  Y  I  P  T  C  K  Y  F  *  Q  G  P  S  A  *  S  K  K  Y  S  *   : D  T  S  F  R  R  V  V  D  G  S  S  </first_frame>
            <second_frame>  Q  A  D  I  A  P  L  M  :  S  T  L  L  G  L  P  C  P  I  N  S  V  G  N  L  P  L  Q  Y  M  N  L  N  K  :  A  E  E  V  E  A  V  L  A  N  T  K  Q  I  L  N  Q  F  L  R  K  S   : Q  L  K  Q  S  T  S  L  Y  I  K  P  F  K  P  L  A  S  Y  S  S  L  L  R  E  I  E  Q  L  I  S  L  K  E  Y  E  T  A  V  K  L  S  E  H  L  R  S  L  A  L  Q  G  L  H  Y  F  Q  T  Y  D  W  L  M  L  M  T  V  I  T  L  G  Y  V  G  W  M  I  Y  V  I  L  H  I  L  Q  S  Y  T  S  L  P  A  N  I  F  S  K  D  Q  V  P  N  P  R  S  T  V  K  :  I  H  L  L  G  G  L  L  M  G  V  A </second_frame>
            <third_frame>   K  L  T  *  H  H  *  C :   P  L  F  L  V  C  H  V  L  S  T  Q  L  A  I  C  L  F  S  T  *  I  *  T  R :   Q  K  K  L  K  L  C  W  P  I  R  S  K  S  S  I  S  S  F  E  S  H  :  S  *  S  S  R  P  H  Y  T  S  S  L  S  S  P  W  L  V  I  H  H  Y  C  V  K  L  S  N  *  F  L  S  K  S  M  K  L  Q  *  N  Y  L  N  I  L  G  A  W  H  F  K  D  F  T  I  F  R  H  M  I  G  *  C  *  *  L  *  S  L  L  A  M  L  V  G  *  S  M  S  Y  S  I  S  C  N  L  I  H  P  Y  L  Q  I  F  L  A  R  T  K  C  L  I  Q  E  V  Q  L  R :   Y  I  F  *  E  G  C  *  W  E  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18806" stop="18829"/>
                    <exon start="18934" stop="19008"/>
                    <exon start="19160" stop="19226"/>
                    <exon start="19608" stop="19930"/>
                    <exon start="21239" stop="21274"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>525</number_coding_nucleotides>
                  <number_encoded_amino_acids>175</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QADIAPLMSTLLGLPCPINSVGNLPLQYMNLNKAEEVEAVLANTKQILNQFLRKSQLKQSTSLYIKPFKPLASYSSLLREIEQLISLKEYETAVKLSEHLRSLALQGLHYFQTYDWLMLMTVITLGYVGWMIYVILHILQSYTSLPANIFSKDQVPNPRSTVKIHLLGGLLMGVA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="22111" PGL_stop="25321"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22111" e_stop="22189"/>
            <exon e_start="23200" e_stop="23302"/>
            <exon e_start="23394" e_stop="23562"/>
            <exon e_start="23744" e_stop="23842"/>
            <exon e_start="23941" e_stop="23999"/>
            <exon e_start="24909" e_stop="25014"/>
            <exon e_start="25255" e_stop="25321"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.969" e_score="0.990"/>
          <exon-intron don_prob="0.465" acc_prob="0.419" e_score="1.000"/>
          <exon-intron don_prob="0.894" acc_prob="0.913" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.920" e_score="0.981"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22111" e_stop="22189" e_length="79"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.963">
            <gDNA_intron_boundary i_start="22190" i_stop="23199" i_length="1010"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="23200" e_stop="23302" e_length="103"/>
          </exon>
          <intron i_serial="2" don_prob="0.963" acc_prob="0.969">
            <gDNA_intron_boundary i_start="23303" i_stop="23393" i_length="91"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="23394" e_stop="23562" e_length="169"/>
          </exon>
          <intron i_serial="3" don_prob="0.465" acc_prob="0.419">
            <gDNA_intron_boundary i_start="23563" i_stop="23743" i_length="181"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="23744" e_stop="23842" e_length="99"/>
          </exon>
          <intron i_serial="4" don_prob="0.894" acc_prob="0.913">
            <gDNA_intron_boundary i_start="23843" i_stop="23940" i_length="98"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="23941" e_stop="23999" e_length="59"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.997">
            <gDNA_intron_boundary i_start="24000" i_stop="24908" i_length="909"/>
          </intron>
          <exon e_serial="6" e_score="0.981">
            <gDNA_exon_boundary e_start="24909" e_stop="25014" e_length="106"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.920">
            <gDNA_intron_boundary i_start="25015" i_stop="25254" i_length="240"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="25255" e_stop="25321" e_length="67"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22111" stop="22189"/>
              <exon start="23200" stop="23302"/>
              <exon start="23394" stop="23562"/>
              <exon start="23744" stop="23842"/>
              <exon start="23941" stop="23999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22111" stop="22189"/>
              <exon start="23200" stop="23302"/>
              <exon start="23394" stop="23562"/>
              <exon start="23744" stop="23839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22112" stop="22189"/>
              <exon start="23200" stop="23302"/>
              <exon start="23394" stop="23562"/>
              <exon start="23744" stop="23842"/>
              <exon start="23941" stop="23999"/>
              <exon start="24909" stop="25014"/>
              <exon start="25255" stop="25321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342211" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTGGCTTTCAACTATTCATAGAACAGAGAAGCAGGAATTATTAGTCCTCCACCAACTGTTGAATTGGTCCATAGCTG : GCTTCTCGATGATACTCCCACTCTTTTCAGCTACTGGTCTCTTATCCAGGCTGACTTCCATTTTCCTTGGCGTTGCACCTCCCTTCCTGCTTCTATCAATCGG : TTATGAAGCAGTCTTCTATGGTGCTCTCAGTCTTGCACTTATAGCATGGATACTGGCGGAAAATGCTTATCTCCATATAAGCAAGTTCAGATCATCAGCTCCAGTCAAATCCATGGAGGATGATAATAGGTGTCTGGAGTTATCCGATATGAGGATCCCATTAACTTTT : ATGGTCTTTTTCAATATTGCATTCTTTGGAACTGGTAATTTTGCAAGTATTGCAAGTTTTGAGATCTCCTCCGTGTATCGATTCATTACAATTTTCAGT : CCTTTTCTGATGGCGGCATTACTTATTTTCAAGCTGTTGATACCATTCATACTTGTCAT : ATGTGCGTTCAGTGCAATCACAAAATTGGTGCAAGTTCCATTGTTGGGATGCTATTTTCTGGTGATCTTGTGCTCTGATGTAATGACAATCCATTTCTTCTTCCTG : GTCCGAAATAAAGGAAGCTGGATGGAAATTGGCAACAGCATTAGCCATTTCGGAATTATGAGTGCTC</gDNA_template>
            <first_frame> V  W  L  S  T  I  H  R  T  E  K  Q  E  L  L  V  L  H  Q  L  L  N  W  S  I  A   : G  F  S  M  I  L  P  L  F  S  A  T  G  L  L  S  R  L  T  S  I  F  L  G  V  A  P  P  F  L  L  L  S  I  G :   Y  E  A  V  F  Y  G  A  L  S  L  A  L  I  A  W  I  L  A  E  N  A  Y  L  H  I  S  K  F  R  S  S  A  P  V  K  S  M  E  D  D  N  R  C  L  E  L  S  D  M  R  I  P  L  T  F  :  M  V  F  F  N  I  A  F  F  G  T  G  N  F  A  S  I  A  S  F  E  I  S  S  V  Y  R  F  I  T  I  F  S  :  P  F  L  M  A  A  L  L  I  F  K  L  L  I  P  F  I  L  V  I :   C  A  F  S  A  I  T  K  L  V  Q  V  P  L  L  G  C  Y  F  L  V  I  L  C  S  D  V  M  T  I  H  F  F  F  L  :  V  R  N  K  G  S  W  M  E  I  G  N  S  I  S  H  F  G  I  M  S  A  </first_frame>
            <second_frame>  F  G  F  Q  L  F  I  E  Q  R  S  R  N  Y  *  S  S  T  N  C  *  I  G  P  *  L  :  A  S  R  *  Y  S  H  S  F  Q  L  L  V  S  Y  P  G  *  L  P  F  S  L  A  L  H  L  P  S  C  F  Y  Q  S   : V  M  K  Q  S  S  M  V  L  S  V  L  H  L  *  H  G  Y  W  R  K  M  L  I  S  I  *  A  S  S  D  H  Q  L  Q  S  N  P  W  R  M  I  I  G  V  W  S  Y  P  I  *  G  S  H  *  L  L :   W  S  F  S  I  L  H  S  L  E  L  V  I  L  Q  V  L  Q  V  L  R  S  P  P  C  I  D  S  L  Q  F  S  V :   L  F  *  W  R  H  Y  L  F  S  S  C  *  Y  H  S  Y  L  S   : Y  V  R  S  V  Q  S  Q  N  W  C  K  F  H  C  W  D  A  I  F  W  *  S  C  A  L  M  *  *  Q  S  I  S  S  S  W :   S  E  I  K  E  A  G  W  K  L  A  T  A  L  A  I  S  E  L  *  V  L </second_frame>
            <third_frame>   L  A  F  N  Y  S  *  N  R  E  A  G  I  I  S  P  P  P  T  V  E  L  V  H  S  W :   L  L  D  D  T  P  T  L  F  S  Y  W  S  L  I  Q  A  D  F  H  F  P  W  R  C  T  S  L  P  A  S  I  N  R  :  L  *  S  S  L  L  W  C  S  Q  S  C  T  Y  S  M  D  T  G  G  K  C  L  S  P  Y  K  Q  V  Q  I  I  S  S  S  Q  I  H  G  G  *  *  *  V  S  G  V  I  R  Y  E  D  P  I  N  F   : Y  G  L  F  Q  Y  C  I  L  W  N  W  *  F  C  K  Y  C  K  F  *  D  L  L  R  V  S  I  H  Y  N  F  Q   : S  F  S  D  G  G  I  T  Y  F  Q  A  V  D  T  I  H  T  C  H  :  M  C  V  Q  C  N  H  K  I  G  A  S  S  I  V  G  M  L  F  S  G  D  L  V  L  *  C  N  D  N  P  F  L  L  P   : G  P  K  *  R  K  L  D  G  N  W  Q  Q  H  *  P  F  R  N  Y  E  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22111" stop="22189"/>
                    <exon start="23200" stop="23302"/>
                    <exon start="23394" stop="23562"/>
                    <exon start="23744" stop="23842"/>
                    <exon start="23941" stop="23999"/>
                    <exon start="24909" stop="25014"/>
                    <exon start="25255" stop="25320"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>681</number_coding_nucleotides>
                  <number_encoded_amino_acids>227</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VWLSTIHRTEKQELLVLHQLLNWSIAGFSMILPLFSATGLLSRLTSIFLGVAPPFLLLSIGYEAVFYGALSLALIAWILAENAYLHISKFRSSAPVKSMEDDNRCLELSDMRIPLTFMVFFNIAFFGTGNFASIASFEISSVYRFITIFSPFLMAALLIFKLLIPFILVICAFSAITKLVQVPLLGCYFLVILCSDVMTIHFFFLVRNKGSWMEIGNSISHFGIMSA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="27329" PGL_stop="27923"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27329" e_stop="27923"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.951"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.951">
            <gDNA_exon_boundary e_start="27329" e_stop="27923" e_length="595"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27329" stop="27923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559422" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCATTTCTGCCTTCTACAGCACCAGTTCCACAAGATTCCAGCCCATCGTCCTCAAAAGAAATCCTCTCAGCGTTTACTTCTCTTCAGACACAGCTGTTTGAAGCAGTTGCTGAACTACAAGAAATACTTGATCTTCAAGATGAGAAGCAAAAAGTCACCCGTGAAATTAGGTTAAATGATTCTGCAATTCTTGCCTTCGCCAACAAACTCAAAGGAGCTGAGCATGTTCTTGACAATCTTGTTGATGACTATGCTGACTATCGTCGCCCCAAACGGGCCAAGTTGGAAAACGATACTGAAGAATCTTCATTAACATCTGTGGCGACCCAGTTGAAATTATCTGACGTTTTGTCATATGCTCATAGGATAAGTTACACTACTTTTGCACCACCTGAATTTGGTGGCGGACAGGCTCCTCTCCGGGGAGCTCTCCCACCGGCTCCACAGGATGAGCAATTGCGTGCATCACAGTTATATATTTTTGCTGATCTTGATGTTGGTTTACCTAAAACAGATGAAGGCAAGGAGAATATTTTGGAGCCACTCATTGAGCCTCCGGCAGAAAGTAATCCACTTGCCTATCTATCATCAATTC</gDNA_template>
            <first_frame> S  F  L  P  S  T  A  P  V  P  Q  D  S  S  P  S  S  S  K  E  I  L  S  A  F  T  S  L  Q  T  Q  L  F  E  A  V  A  E  L  Q  E  I  L  D  L  Q  D  E  K  Q  K  V  T  R  E  I  R  L  N  D  S  A  I  L  A  F  A  N  K  L  K  G  A  E  H  V  L  D  N  L  V  D  D  Y  A  D  Y  R  R  P  K  R  A  K  L  E  N  D  T  E  E  S  S  L  T  S  V  A  T  Q  L  K  L  S  D  V  L  S  Y  A  H  R  I  S  Y  T  T  F  A  P  P  E  F  G  G  G  Q  A  P  L  R  G  A  L  P  P  A  P  Q  D  E  Q  L  R  A  S  Q  L  Y  I  F  A  D  L  D  V  G  L  P  K  T  D  E  G  K  E  N  I  L  E  P  L  I  E  P  P  A  E  S  N  P  L  A  Y  L  S  S  I  </first_frame>
            <second_frame>  H  F  C  L  L  Q  H  Q  F  H  K  I  P  A  H  R  P  Q  K  K  S  S  Q  R  L  L  L  F  R  H  S  C  L  K  Q  L  L  N  Y  K  K  Y  L  I  F  K  M  R  S  K  K  S  P  V  K  L  G  *  M  I  L  Q  F  L  P  S  P  T  N  S  K  E  L  S  M  F  L  T  I  L  L  M  T  M  L  T  I  V  A  P  N  G  P  S  W  K  T  I  L  K  N  L  H  *  H  L  W  R  P  S  *  N  Y  L  T  F  C  H  M  L  I  G  *  V  T  L  L  L  H  H  L  N  L  V  A  D  R  L  L  S  G  E  L  S  H  R  L  H  R  M  S  N  C  V  H  H  S  Y  I  F  L  L  I  L  M  L  V  Y  L  K  Q  M  K  A  R  R  I  F  W  S  H  S  L  S  L  R  Q  K  V  I  H  L  P  I  Y  H  Q  F </second_frame>
            <third_frame>   I  S  A  F  Y  S  T  S  S  T  R  F  Q  P  I  V  L  K  R  N  P  L  S  V  Y  F  S  S  D  T  A  V  *  S  S  C  *  T  T  R  N  T  *  S  S  R  *  E  A  K  S  H  P  *  N  *  V  K  *  F  C  N  S  C  L  R  Q  Q  T  Q  R  S  *  A  C  S  *  Q  S  C  *  *  L  C  *  L  S  S  P  Q  T  G  Q  V  G  K  R  Y  *  R  I  F  I  N  I  C  G  D  P  V  E  I  I  *  R  F  V  I  C  S  *  D  K  L  H  Y  F  C  T  T  *  I  W  W  R  T  G  S  S  P  G  S  S  P  T  G  S  T  G  *  A  I  A  C  I  T  V  I  Y  F  C  *  S  *  C  W  F  T  *  N  R  *  R  Q  G  E  Y  F  G  A  T  H  *  A  S  G  R  K  *  S  T  C  L  S  I  I  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27329" stop="27922"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>594</number_coding_nucleotides>
                  <number_encoded_amino_acids>198</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFLPSTAPVPQDSSPSSSKEILSAFTSLQTQLFEAVAELQEILDLQDEKQKVTREIRLNDSAILAFANKLKGAEHVLDNLVDDYADYRRPKRAKLENDTEESSLTSVATQLKLSDVLSYAHRISYTTFAPPEFGGGQAPLRGALPPAPQDEQLRASQLYIFADLDVGLPKTDEGKENILEPLIEPPAESNPLAYLSSI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="33539" PGL_stop="34962"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33539" e_stop="34962"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="33539" e_stop="34962" e_length="1424"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33539" stop="33882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33580" stop="34370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33600" stop="34414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33602" stop="34474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33628" stop="34390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33637" stop="34113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33650" stop="34173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33673" stop="34311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33682" stop="34481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33683" stop="34336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33703" stop="34383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33857" stop="34463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709140" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33994" stop="34463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34188" stop="34828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34189" stop="34833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34381" stop="34807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34625" stop="34962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34625" stop="34962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351915" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAAATAAAAAATAAAAACATATATCATTGAATGAAGAGAAGTGAGAAATATGAAGACCCCATTGAAGCCCTCCAGCTATTTCCCATCCCCCATTTACCTATTTCCCTCTCCTTTTTTTAGCCATTTTTTTCTATTAACTTTCCCTTCTCAAACACTGAGCTGAAAAACAGAGCAAATGGGTTTAACTCTTCTGCTTTTTCTTTGCTTCTCTGTTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCTTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCTACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATCCTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTACTTCTAAAGCTTCGTTGGTTGAAGGAAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATACAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCGTTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCTTCTTACAATCCCAGATTTGCTCAAGCTTTGAGAAATGCTTGTAATAATTTCCAGAAAGATCCAACATTGTCCGTTTTCAACGACATCATGACTCCGAATAAGTTTGACAACATGTATTACCAGAACTTACCCAAGGGTTTGGGTCTGTTGTCTTCGGACCGGGGTCTGTTTTCAGATCCGAGGACAAGAGTTCATGTTGAAGAGTATATTAGAGATCAAAATGCATTCTTTAAGGCGTTTGCTTCAGCAATGCAGAAGCTAAGTGATCATGGTGTTAAAATTGGGAGAAGTGGTGAGATCAGACACAGATGTGATGCTTTCAACAATTAAACTATTTGAGGGGTATTGATTATGTTACTGTACGTTCGAATTTTTTGTTGAATTTAATCACTCACAAGACGAAAGTAAAACTTATAATATGTATACAATGTTTTTTACTATCATTTTTATTAAGATTACAAGGCTCTGCTTCAGTTCTGCTTTTAGAACAACTACTACTACTACTACTTGTGATTAGTGTGTGTTGAGATGCAGGTAAGAGGCTGTTTGTTCGTCGAATTTGATTCAATAAGAAATGAAACCGTAAATAAA</gDNA_template>
            <first_frame> L  N  K  K  *  K  H  I  S  L  N  E  E  K  *  E  I  *  R  P  H  *  S  P  P  A  I  S  H  P  P  F  T  Y  F  P  L  L  F  L  A  I  F  F  Y  *  L  S  L  L  K  H  *  A  E  K  Q  S  K  W  V  *  L  F  C  F  F  F  A  S  L  L  S  *  L  L  L  Y  H  S  T  I  R  R  *  I  L  L  I  T  G  D  H  V  Q  D  L  N  K  L  C  K  K  P  L  Q  T  N  R  S  L  H  L  L  P  P  P  L  P  S  V  S  S  S  T  T  A  S  S  A  A  A  T  R  P  S  S  S  P  P  L  L  S  T  K  L  N  V  T  Q  K  S  T  Y  H  S  P  A  M  G  S  M  *  S  Y  A  P  K  R  R  L  N  L  L  A  P  A  L  S  L  A  P  T  F  S  P  S  L  P  G  I  S  L  F  K  P  E  A  R  F  I  Q  L  I  W  A  V  K  I  L  L  L  L  K  L  R  W  L  K  E  I  C  P  D  P  Q  C  R  W  I  K  S  Y  K  F  S  G  Q  E  G  F  R  Y  R  K  W  *  R  Y  P  V  L  T  Q  L  G  F  P  I  V  K  S  S  A  Q  I  F  T  I  T  T  K  L  P  N  M  I  L  L  T  I  P  D  L  L  K  L  *  E  M  L  V  I  I  S  R  K  I  Q  H  C  P  F  S  T  T  S  *  L  R  I  S  L  T  T  C  I  T  R  T  Y  P  R  V  W  V  C  C  L  R  T  G  V  C  F  Q  I  R  G  Q  E  F  M  L  K  S  I  L  E  I  K  M  H  S  L  R  R  L  L  Q  Q  C  R  S  *  V  I  M  V  L  K  L  G  E  V  V  R  S  D  T  D  V  M  L  S  T  I  K  L  F  E  G  Y  *  L  C  Y  C  T  F  E  F  F  V  E  F  N  H  S  Q  D  E  S  K  T  Y  N  M  Y  T  M  F  F  T  I  I  F  I  K  I  T  R  L  C  F  S  S  A  F  R  T  T  T  T  T  T  T  C  D  *  C  V  L  R  C  R  *  E  A  V  C  S  S  N  L  I  Q  *  E  M  K  P  *  I   </first_frame>
            <second_frame>  *  I  K  N  K  N  I  Y  H  *  M  K  R  S  E  K  Y  E  D  P  I  E  A  L  Q  L  F  P  I  P  H  L  P  I  S  L  S  F  F  *  P  F  F  S  I  N  F  P  F  S  N  T  E  L  K  N  R  A  N  G  F  N  S  S  A  F  S  L  L  L  C  Y  L  N  S  F  F  I  T  A  P  F  A  A  K  Y  C  L  L  P  E  I  M  S  K  I  *  T  N  Y  A  R  N  H  Y  K  Q  T  D  H  F  T  Y  Y  R  R  R  Y  P  P  S  L  L  P  R  L  L  R  R  R  L  R  R  V  H  P  R  L  L  H  S  F  Q  Q  S  *  T  *  R  R  N  Q  P  I  T  P  R  R  W  V  R  C  S  R  T  R  Q  N  G  A  *  T  C  L  P  R  R  C  L  L  L  R  H  S  R  R  R  C  P  E  S  R  C  S  N  R  R  P  V  L  S  S  *  F  G  P  *  R  F  F  Y  F  *  S  F  V  G  *  R  K  S  A  P  T  H  N  V  D  G  S  N  H  T  N  F  R  V  K  R  V  F  G  T  G  N  G  S  V  I  R  C  S  H  N  W  V  F  P  L  *  R  V  Q  L  K  S  L  Q  L  Q  Q  N  F  P  I  *  S  F  L  Q  S  Q  I  C  S  S  F  E  K  C  L  *  *  F  P  E  R  S  N  I  V  R  F  Q  R  H  H  D  S  E  *  V  *  Q  H  V  L  P  E  L  T  Q  G  F  G  S  V  V  F  G  P  G  S  V  F  R  S  E  D  K  S  S  C  *  R  V  Y  *  R  S  K  C  I  L  *  G  V  C  F  S  N  A  E  A  K  *  S  W  C  *  N  W  E  K  W  *  D  Q  T  Q  M  *  C  F  Q  Q  L  N  Y  L  R  G  I  D  Y  V  T  V  R  S  N  F  L  L  N  L  I  T  H  K  T  K  V  K  L  I  I  C  I  Q  C  F  L  L  S  F  L  L  R  L  Q  G  S  A  S  V  L  L  L  E  Q  L  L  L  L  L  L  V  I  S  V  C  *  D  A  G  K  R  L  F  V  R  R  I  *  F  N  K  K  *  N  R  K  *  </second_frame>
            <third_frame>   K  *  K  I  K  T  Y  I  I  E  *  R  E  V  R  N  M  K  T  P  L  K  P  S  S  Y  F  P  S  P  I  Y  L  F  P  S  P  F  F  S  H  F  F  L  L  T  F  P  S  Q  T  L  S  *  K  T  E  Q  M  G  L  T  L  L  L  F  L  C  F  S  V  I  L  T  P  S  L  S  Q  H  H  S  P  L  N  T  A  Y  Y  R  R  S  C  P  R  F  E  Q  I  M  Q  E  T  T  T  N  K  Q  I  T  S  P  T  T  A  A  A  T  L  R  L  F  F  H  D  C  F  V  G  G  C  D  A  S  I  L  V  S  S  T  P  F  N  K  A  E  R  D  A  E  I  N  L  S  L  P  G  D  G  F  D  V  V  V  R  A  K  T  A  L  E  L  A  C  P  G  V  V  S  C  S  D  I  L  A  V  A  A  R  N  L  V  V  Q  T  G  G  P  F  Y  P  V  N  L  G  R  K  D  S  F  T  S  K  A  S  L  V  E  G  N  L  P  R  P  T  M  S  M  D  Q  I  I  Q  I  F  G  S  R  G  F  S  V  P  E  M  V  A  L  S  G  A  H  T  I  G  F  S  H  C  K  E  F  S  S  N  L  Y  N  Y  N  K  T  S  Q  Y  D  P  S  Y  N  P  R  F  A  Q  A  L  R  N  A  C  N  N  F  Q  K  D  P  T  L  S  V  F  N  D  I  M  T  P  N  K  F  D  N  M  Y  Y  Q  N  L  P  K  G  L  G  L  L  S  S  D  R  G  L  F  S  D  P  R  T  R  V  H  V  E  E  Y  I  R  D  Q  N  A  F  F  K  A  F  A  S  A  M  Q  K  L  S  D  H  G  V  K  I  G  R  S  G  E  I  R  H  R  C  D  A  F  N  N  *  T  I  *  G  V  L  I  M  L  L  Y  V  R  I  F  C  *  I  *  S  L  T  R  R  K  *  N  L  *  Y  V  Y  N  V  F  Y  Y  H  F  Y  *  D  Y  K  A  L  L  Q  F  C  F  *  N  N  Y  Y  Y  Y  Y  L  *  L  V  C  V  E  M  Q  V  R  G  C  L  F  V  E  F  D  S  I  R  N  E  T  V  N  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33703" stop="34701"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>996</number_coding_nucleotides>
                  <number_encoded_amino_acids>332</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTEQMGLTLLLFLCFSVILTPSLSQHHSPLNTAYYRRSCPRFEQIMQETTTNKQITSPTTAAATLRLFFHDCFVGGCDASILVSSTPFNKAERDAEINLSLPGDGFDVVVRAKTALELACPGVVSCSDILAVAARNLVVQTGGPFYPVNLGRKDSFTSKASLVEGNLPRPTMSMDQIIQIFGSRGFSVPEMVALSGAHTIGFSHCKEFSSNLYNYNKTSQYDPSYNPRFAQALRNACNNFQKDPTLSVFNDIMTPNKFDNMYYQNLPKGLGLLSSDRGLFSDPRTRVHVEEYIRDQNAFFKAFASAMQKLSDHGVKIGRSGEIRHRCDAFNN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34686" stop="34898"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CFQQLNYLRGIDYVTVRSNFLLNLITHKTKVKLIICIQCFLLSFLLRLQGSASVLLLEQLLLLLLVISVC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="35915" PGL_stop="36524"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35915" e_stop="36524"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="35915" e_stop="36524" e_length="610"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35915" stop="36524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241773" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGATTGTGTCAATGGTACACTCTCTTCATTCTTGCTTTCACTGTTTGAGCATCAAGATGCTCAAAAATGAAAAACAACTCTGGAGTTCATTGCATTTGCTCTGCAGCAATGTTTATTGCAATGCAGACCTTAAAGAAACATGAGAATAACAATTCTCTAACAACTTCCGCAGTTGCAGCAATCAATCAACTCCAGCATAAATACCAAATTACTAGACAGCGGCTTGTGGAAGCCACGAACAGTGCATAGAATAAGCCTCAGGCACACAAGAAAGTGAAAATAGCATTGCTTGAAGAGTATTAGGAGACAATGAGTTCATGTTAAAGACAGCCTCTTTTCTCCAAAAACTAAAACACACTGTTCAGAATCTTTCTTTACACCTCCAACATTATTTACCATGTCAACTGTCACATGACCTCAGAAGACACGACGAGCAAAACCAAAACCAAAATCATGCTATCCGAAGCTATGCAAAGAGAAAACCGTGCCTAATTACAAGCCATTTCTCAGAAAAAGGAATGAAATAGCATACAGTGAAGAAACAGAAACAAACAAGAGCTATGAAGAACTTATCCGTGCTTGACTGATATCATCATCCGAATTAAGCAAC</gDNA_template>
            <first_frame> R  L  C  Q  W  Y  T  L  F  I  L  A  F  T  V  *  A  S  R  C  S  K  M  K  N  N  S  G  V  H  C  I  C  S  A  A  M  F  I  A  M  Q  T  L  K  K  H  E  N  N  N  S  L  T  T  S  A  V  A  A  I  N  Q  L  Q  H  K  Y  Q  I  T  R  Q  R  L  V  E  A  T  N  S  A  *  N  K  P  Q  A  H  K  K  V  K  I  A  L  L  E  E  Y  *  E  T  M  S  S  C  *  R  Q  P  L  F  S  K  N  *  N  T  L  F  R  I  F  L  Y  T  S  N  I  I  Y  H  V  N  C  H  M  T  S  E  D  T  T  S  K  T  K  T  K  I  M  L  S  E  A  M  Q  R  E  N  R  A  *  L  Q  A  I  S  Q  K  K  E  *  N  S  I  Q  *  R  N  R  N  K  Q  E  L  *  R  T  Y  P  C  L  T  D  I  I  I  R  I  K  Q  </first_frame>
            <second_frame>  D  C  V  N  G  T  L  S  S  F  L  L  S  L  F  E  H  Q  D  A  Q  K  *  K  T  T  L  E  F  I  A  F  A  L  Q  Q  C  L  L  Q  C  R  P  *  R  N  M  R  I  T  I  L  *  Q  L  P  Q  L  Q  Q  S  I  N  S  S  I  N  T  K  L  L  D  S  G  L  W  K  P  R  T  V  H  R  I  S  L  R  H  T  R  K  *  K  *  H  C  L  K  S  I  R  R  Q  *  V  H  V  K  D  S  L  F  S  P  K  T  K  T  H  C  S  E  S  F  F  T  P  P  T  L  F  T  M  S  T  V  T  *  P  Q  K  T  R  R  A  K  P  K  P  K  S  C  Y  P  K  L  C  K  E  K  T  V  P  N  Y  K  P  F  L  R  K  R  N  E  I  A  Y  S  E  E  T  E  T  N  K  S  Y  E  E  L  I  R  A  *  L  I  S  S  S  E  L  S  N </second_frame>
            <third_frame>   I  V  S  M  V  H  S  L  H  S  C  F  H  C  L  S  I  K  M  L  K  N  E  K  Q  L  W  S  S  L  H  L  L  C  S  N  V  Y  C  N  A  D  L  K  E  T  *  E  *  Q  F  S  N  N  F  R  S  C  S  N  Q  S  T  P  A  *  I  P  N  Y  *  T  A  A  C  G  S  H  E  Q  C  I  E  *  A  S  G  T  Q  E  S  E  N  S  I  A  *  R  V  L  G  D  N  E  F  M  L  K  T  A  S  F  L  Q  K  L  K  H  T  V  Q  N  L  S  L  H  L  Q  H  Y  L  P  C  Q  L  S  H  D  L  R  R  H  D  E  Q  N  Q  N  Q  N  H  A  I  R  S  Y  A  K  R  K  P  C  L  I  T  S  H  F  S  E  K  G  M  K  *  H  T  V  K  K  Q  K  Q  T  R  A  M  K  N  L  S  V  L  D  *  Y  H  H  P  N  *  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36208" stop="36441"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVLGDNEFMLKTASFLQKLKHTVQNLSLHLQHYLPCQLSHDLRRHDEQNQNQNHAIRSYAKRKPCLITSHFSEKGMK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35963" stop="36163"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASRCSKMKNNSGVHCICSAAMFIAMQTLKKHENNNSLTTSAVAAINQLQHKYQITRQRLVEATNSA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="37072" PGL_stop="36222"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37072" e_stop="36222"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="37072" e_stop="36222" e_length="851"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37072" stop="36367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37018" stop="36222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552625" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTTCAGTTTAGCGTTAGATGATCAGAACAAAACTGCAATTGGGGTATTAGGAGCTCTGCCTCCACTTCTTCATGCCCTTCGATCTGAATCGGAACGAACTAGGCATGATTCGGCTCTGGCTCTATATCACCTCACTTTAGTTCAGAGTAACAGGGCTAAATTGGTGAAACTCGGGGCGGTTCAGGCATTACTAGGCATGGTTAAAACGGGTCATATGATGGGTCGGATTCTGTTGATACTTTGTAACCTGGCTGCGAGCTCTGAAGGGAGAGCAGCAATGCTTGATGGGGGTGCAGTGGAGTGTTTTGTATGTATGTTGAGAAAGGGAGAGTTTGAATCGGAGTCGACTCGTGAGAATTGTCTTGCTGCATTATATGGACTTAGTCATGGTGGCCTTAGGTTTAAAGGGTTGGCAAAAGAGGCTGCTGCGGAGGAGCTGTTGATACAAGTTGAGGAAATGGGAAGTGAAAGGGCCAAGGATAAAGTTAGAAAGATATTGGAGGTTTTGAGGCAGAAGGATGAAGAGGAGGAAGTTGATTGGGAGAAGTTGCTTAATTCGGATGATGATATCAGTCAAGCACGGATAAGTTCTTCATAGCTCTTGTTTGTTTCTGTTTCTTCACTGTATGCTATTTCATTCCTTTTTCTGAGAAATGGCTTGTAATTAGGCACGGTTTTCTCTTTGCATAGCTTCGGATAGCATGATTTTGGTTTTGGTTTTGCTCGTCGTGTCTTCTGAGGTCATGTGACAGTTGACATGGTAAATAATGTTGGAGGTGTAAAGAAAGATTCTGAACAGTGTGTTTTAGTTTTTGGAGAAAAGAGGCTGTCTTTAACATGAACTCATTG</gDNA_template>
            <first_frame> L  F  S  L  A  L  D  D  Q  N  K  T  A  I  G  V  L  G  A  L  P  P  L  L  H  A  L  R  S  E  S  E  R  T  R  H  D  S  A  L  A  L  Y  H  L  T  L  V  Q  S  N  R  A  K  L  V  K  L  G  A  V  Q  A  L  L  G  M  V  K  T  G  H  M  M  G  R  I  L  L  I  L  C  N  L  A  A  S  S  E  G  R  A  A  M  L  D  G  G  A  V  E  C  F  V  C  M  L  R  K  G  E  F  E  S  E  S  T  R  E  N  C  L  A  A  L  Y  G  L  S  H  G  G  L  R  F  K  G  L  A  K  E  A  A  A  E  E  L  L  I  Q  V  E  E  M  G  S  E  R  A  K  D  K  V  R  K  I  L  E  V  L  R  Q  K  D  E  E  E  E  V  D  W  E  K  L  L  N  S  D  D  D  I  S  Q  A  R  I  S  S  S  *  L  L  F  V  S  V  S  S  L  Y  A  I  S  F  L  F  L  R  N  G  L  *  L  G  T  V  F  S  L  H  S  F  G  *  H  D  F  G  F  G  F  A  R  R  V  F  *  G  H  V  T  V  D  M  V  N  N  V  G  G  V  K  K  D  S  E  Q  C  V  L  V  F  G  E  K  R  L  S  L  T  *  T  H   </first_frame>
            <second_frame>  F  S  V  *  R  *  M  I  R  T  K  L  Q  L  G  Y  *  E  L  C  L  H  F  F  M  P  F  D  L  N  R  N  E  L  G  M  I  R  L  W  L  Y  I  T  S  L  *  F  R  V  T  G  L  N  W  *  N  S  G  R  F  R  H  Y  *  A  W  L  K  R  V  I  *  W  V  G  F  C  *  Y  F  V  T  W  L  R  A  L  K  G  E  Q  Q  C  L  M  G  V  Q  W  S  V  L  Y  V  C  *  E  R  E  S  L  N  R  S  R  L  V  R  I  V  L  L  H  Y  M  D  L  V  M  V  A  L  G  L  K  G  W  Q  K  R  L  L  R  R  S  C  *  Y  K  L  R  K  W  E  V  K  G  P  R  I  K  L  E  R  Y  W  R  F  *  G  R  R  M  K  R  R  K  L  I  G  R  S  C  L  I  R  M  M  I  S  V  K  H  G  *  V  L  H  S  S  C  L  F  L  F  L  H  C  M  L  F  H  S  F  F  *  E  M  A  C  N  *  A  R  F  S  L  C  I  A  S  D  S  M  I  L  V  L  V  L  L  V  V  S  S  E  V  M  *  Q  L  T  W  *  I  M  L  E  V  *  R  K  I  L  N  S  V  F  *  F  L  E  K  R  G  C  L  *  H  E  L  I  </second_frame>
            <third_frame>   F  Q  F  S  V  R  *  S  E  Q  N  C  N  W  G  I  R  S  S  A  S  T  S  S  C  P  S  I  *  I  G  T  N  *  A  *  F  G  S  G  S  I  S  P  H  F  S  S  E  *  Q  G  *  I  G  E  T  R  G  G  S  G  I  T  R  H  G  *  N  G  S  Y  D  G  S  D  S  V  D  T  L  *  P  G  C  E  L  *  R  E  S  S  N  A  *  W  G  C  S  G  V  F  C  M  Y  V  E  K  G  R  V  *  I  G  V  D  S  *  E  L  S  C  C  I  I  W  T  *  S  W  W  P  *  V  *  R  V  G  K  R  G  C  C  G  G  A  V  D  T  S  *  G  N  G  K  *  K  G  Q  G  *  S  *  K  D  I  G  G  F  E  A  E  G  *  R  G  G  S  *  L  G  E  V  A  *  F  G  *  *  Y  Q  S  S  T  D  K  F  F  I  A  L  V  C  F  C  F  F  T  V  C  Y  F  I  P  F  S  E  K  W  L  V  I  R  H  G  F  L  F  A  *  L  R  I  A  *  F  W  F  W  F  C  S  S  C  L  L  R  S  C  D  S  *  H  G  K  *  C  W  R  C  K  E  R  F  *  T  V  C  F  S  F  W  R  K  E  A  V  F  N  M  N  S  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37072" stop="36473"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFSLALDDQNKTAIGVLGALPPLLHALRSESERTRHDSALALYHLTLVQSNRAKLVKLGAVQALLGMVKTGHMMGRILLILCNLAASSEGRAAMLDGGAVECFVCMLRKGEFESESTRENCLAALYGLSHGGLRFKGLAKEAAAEELLIQVEEMGSERAKDKVRKILEVLRQKDEEEEVDWEKLLNSDDDISQARISSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="38045" PGL_stop="37079"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38045" e_stop="37079"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="38045" e_stop="37079" e_length="967"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38045" stop="37392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37819" stop="37079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37819" stop="37370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282921" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGATGTACACTTTTGCTCATCTCCTCAACAGGCTCAAAGTTGAATTTTTGAAACCTTTTGTTTTCATTCATATTTGAACCTCAAAGATTGAATCTTGAAACTTCTTTTTTTTTTTCTTCATTGAAATGGGTACTAGCAAGCAAAGATGGAGAATTTCATTTCACAAGTCTCCATCAAAACAACCTCCTATTCCTATAGAATTTGTCTGTCCTATTTCTGGTTCTCTCATGGCTGACCCTGTAATCGTTTCTTCAGGCCATACTTTTGAGCGTCATTGTGTTCATGCCTGCAAATCACTTTCTTTTACCCCTGTTCTTCCTGATGGCTCTGTTCCTGATTTCTCTACTGTGATCCCTAACTTAGCTCTCAAGTCTACAATCCTCAATTTTTGCCGTTCTTCTTTTCTTGACCCACCAAAACCCATCAATTTTCTCACAGCTGAAAATCTCGTTTTCACATTGAAGGCCACCCGAAAACCCCAAGATGCTACAAGATTTAATGGCGTCCGGGTTATGCAGACGGAAACTGAACTGAACCGGGTACCGAGTCACATATCAATGAGTTCAGAGGAATCTGTGACTCCTAGAAGTGGACCCACTTATTACTCTTCGTCGTCAGCCTCTGACTTTGAAACCCTAAACCCAAATTCCTTTGAAGAAGATGAACTACTTGTGAAATTGAAGAGTTCCCAAATATCTGAACAAGAAGAAGCTGTCATCTCGTTTCGAAAATTGACCCGAACCCGTGAAGAAACCCGGTTCCAGTTATGCACTCCGCGTATACTTTCAGCTCTACGTGTACTCATCACTTCAAGGTATGTTTCTGTACAAGTAAATTCAGTAGCGGCATTGGTAAATTTGTCGTTAGAGAATCGAAACAAGGTGAAAATTTTACGGTCTGGAATTGTTCCGTCTTTGATTGACGTGTTGAAAAGTGGATTCCAAGAATCACAGGAACATGTTGCT</gDNA_template>
            <first_frame> E  D  V  H  F  C  S  S  P  Q  Q  A  Q  S  *  I  F  E  T  F  C  F  H  S  Y  L  N  L  K  D  *  I  L  K  L  L  F  F  F  L  H  *  N  G  Y  *  Q  A  K  M  E  N  F  I  S  Q  V  S  I  K  T  T  S  Y  S  Y  R  I  C  L  S  Y  F  W  F  S  H  G  *  P  C  N  R  F  F  R  P  Y  F  *  A  S  L  C  S  C  L  Q  I  T  F  F  Y  P  C  S  S  *  W  L  C  S  *  F  L  Y  C  D  P  *  L  S  S  Q  V  Y  N  P  Q  F  L  P  F  F  F  S  *  P  T  K  T  H  Q  F  S  H  S  *  K  S  R  F  H  I  E  G  H  P  K  T  P  R  C  Y  K  I  *  W  R  P  G  Y  A  D  G  N  *  T  E  P  G  T  E  S  H  I  N  E  F  R  G  I  C  D  S  *  K  W  T  H  L  L  L  F  V  V  S  L  *  L  *  N  P  K  P  K  F  L  *  R  R  *  T  T  C  E  I  E  E  F  P  N  I  *  T  R  R  S  C  H  L  V  S  K  I  D  P  N  P  *  R  N  P  V  P  V  M  H  S  A  Y  T  F  S  S  T  C  T  H  H  F  K  V  C  F  C  T  S  K  F  S  S  G  I  G  K  F  V  V  R  E  S  K  Q  G  E  N  F  T  V  W  N  C  S  V  F  D  *  R  V  E  K  W  I  P  R  I  T  G  T  C  C  </first_frame>
            <second_frame>  K  M  Y  T  F  A  H  L  L  N  R  L  K  V  E  F  L  K  P  F  V  F  I  H  I  *  T  S  K  I  E  S  *  N  F  F  F  F  F  F  I  E  M  G  T  S  K  Q  R  W  R  I  S  F  H  K  S  P  S  K  Q  P  P  I  P  I  E  F  V  C  P  I  S  G  S  L  M  A  D  P  V  I  V  S  S  G  H  T  F  E  R  H  C  V  H  A  C  K  S  L  S  F  T  P  V  L  P  D  G  S  V  P  D  F  S  T  V  I  P  N  L  A  L  K  S  T  I  L  N  F  C  R  S  S  F  L  D  P  P  K  P  I  N  F  L  T  A  E  N  L  V  F  T  L  K  A  T  R  K  P  Q  D  A  T  R  F  N  G  V  R  V  M  Q  T  E  T  E  L  N  R  V  P  S  H  I  S  M  S  S  E  E  S  V  T  P  R  S  G  P  T  Y  Y  S  S  S  S  A  S  D  F  E  T  L  N  P  N  S  F  E  E  D  E  L  L  V  K  L  K  S  S  Q  I  S  E  Q  E  E  A  V  I  S  F  R  K  L  T  R  T  R  E  E  T  R  F  Q  L  C  T  P  R  I  L  S  A  L  R  V  L  I  T  S  R  Y  V  S  V  Q  V  N  S  V  A  A  L  V  N  L  S  L  E  N  R  N  K  V  K  I  L  R  S  G  I  V  P  S  L  I  D  V  L  K  S  G  F  Q  E  S  Q  E  H  V  A </second_frame>
            <third_frame>   R  C  T  L  L  L  I  S  S  T  G  S  K  L  N  F  *  N  L  L  F  S  F  I  F  E  P  Q  R  L  N  L  E  T  S  F  F  F  S  S  L  K  W  V  L  A  S  K  D  G  E  F  H  F  T  S  L  H  Q  N  N  L  L  F  L  *  N  L  S  V  L  F  L  V  L  S  W  L  T  L  *  S  F  L  Q  A  I  L  L  S  V  I  V  F  M  P  A  N  H  F  L  L  P  L  F  F  L  M  A  L  F  L  I  S  L  L  *  S  L  T  *  L  S  S  L  Q  S  S  I  F  A  V  L  L  F  L  T  H  Q  N  P  S  I  F  S  Q  L  K  I  S  F  S  H  *  R  P  P  E  N  P  K  M  L  Q  D  L  M  A  S  G  L  C  R  R  K  L  N  *  T  G  Y  R  V  T  Y  Q  *  V  Q  R  N  L  *  L  L  E  V  D  P  L  I  T  L  R  R  Q  P  L  T  L  K  P  *  T  Q  I  P  L  K  K  M  N  Y  L  *  N  *  R  V  P  K  Y  L  N  K  K  K  L  S  S  R  F  E  N  *  P  E  P  V  K  K  P  G  S  S  Y  A  L  R  V  Y  F  Q  L  Y  V  Y  S  S  L  Q  G  M  F  L  Y  K  *  I  Q  *  R  H  W  *  I  C  R  *  R  I  E  T  R  *  K  F  Y  G  L  E  L  F  R  L  *  L  T  C  *  K  V  D  S  K  N  H  R  N  M  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37945" stop="37079"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>867</number_coding_nucleotides>
                  <number_encoded_amino_acids>289</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFFFFFFIEMGTSKQRWRISFHKSPSKQPPIPIEFVCPISGSLMADPVIVSSGHTFERHCVHACKSLSFTPVLPDGSVPDFSTVIPNLALKSTILNFCRSSFLDPPKPINFLTAENLVFTLKATRKPQDATRFNGVRVMQTETELNRVPSHISMSSEESVTPRSGPTYYSSSSASDFETLNPNSFEEDELLVKLKSSQISEQEEAVISFRKLTRTREETRFQLCTPRILSALRVLITSRYVSVQVNSVAALVNLSLENRNKVKILRSGIVPSLIDVLKSGFQESQEHVA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="43275" PGL_stop="44123"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43275" e_stop="43406"/>
            <exon e_start="43513" e_stop="44123"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.947" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="43275" e_stop="43406" e_length="132"/>
          </exon>
          <intron i_serial="1" don_prob="0.947" acc_prob="1.000">
            <gDNA_intron_boundary i_start="43407" i_stop="43512" i_length="106"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="43513" e_stop="44123" e_length="611"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43275" stop="43406"/>
              <exon start="43513" stop="44080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43275" stop="43406"/>
              <exon start="43513" stop="43954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43275" stop="43406"/>
              <exon start="43513" stop="43917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43275" stop="43406"/>
              <exon start="43513" stop="43848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43281" stop="43406"/>
              <exon start="43513" stop="44055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43283" stop="43406"/>
              <exon start="43513" stop="43777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236208" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43284" stop="43406"/>
              <exon start="43513" stop="43846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43291" stop="43406"/>
              <exon start="43513" stop="43849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43291" stop="43406"/>
              <exon start="43513" stop="43786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241273" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43311" stop="43406"/>
              <exon start="43513" stop="44050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461176" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43361" stop="43406"/>
              <exon start="43513" stop="44050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458778" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43401" stop="43406"/>
              <exon start="43513" stop="44123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43539" stop="44055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43539" stop="44045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43539" stop="44045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43581" stop="44055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298779" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGAACAAAAATACACGAAAGAAGAAAATGGAAGGAGGAACAGAAGCCTATCCAGATTTAGGTAGACATTGCCAACTATCTGATTGCCATCAACTCGATTTTCTCCCTTTTACCTGCCATGCCTGTTTAAAG : GTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGCTGTTGCTAAAGGAACCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGAATGGGAAAGATTGTGGGAATAAAAGTCGTGCCTCATCTCCAAGCCCTGCGAACCCTTCTGTGAAAGCTTGTTGATCGTTTCACAGCACATTACTATTCATTTGTCTTTTGTAATTACATTATTTTATGGAAAACAATGTTGTTCTATTTTCAATTTCTCCCTCCCTTCTATGATAAAACAACGAATTTAAGAATGACATAACAATTCGGAATCATATAATCTT</gDNA_template>
            <first_frame> K  N  K  N  T  R  K  K  K  M  E  G  G  T  E  A  Y  P  D  L  G  R  H  C  Q  L  S  D  C  H  Q  L  D  F  L  P  F  T  C  H  A  C  L  K  :  V  F  C  V  E  H  R  S  C  K  S  H  E  C  P  K  S  D  F  N  S  R  I  V  L  V  C  E  I  C  S  M  S  M  E  T  T  G  C  K  V  E  D  H  K  A  I  L  Q  K  H  E  E  S  G  D  C  D  P  K  K  K  K  K  K  P  T  C  P  V  K  R  C  K  G  I  L  T  F  S  N  T  S  T  C  K  I  C  R  I  Q  V  C  L  R  H  R  F  P  A  D  H  A  C  N  P  T  S  S  S  S  Q  L  L  L  K  E  P  N  N  K  F  L  T  A  L  L  A  R  N  G  K  D  C  G  N  K  S  R  A  S  S  P  S  P  A  N  P  S  V  K  A  C  *  S  F  H  S  T  L  L  F  I  C  L  L  *  L  H  Y  F  M  E  N  N  V  V  L  F  S  I  S  P  S  L  L  *  *  N  N  E  F  K  N  D  I  T  I  R  N  H  I  I   </first_frame>
            <second_frame>  R  T  K  I  H  E  R  R  K  W  K  E  E  Q  K  P  I  Q  I  *  V  D  I  A  N  Y  L  I  A  I  N  S  I  F  S  L  L  P  A  M  P  V  *  R :   Y  F  V  W  N  I  D  H  A  S  L  M  N  A  Q  N  L  T  L  T  A  E  S  F  W  F  A  K  F  V  L  C  P  W  K  L  P  A  V  K  L  K  T  T  K  Q  Y  Y  K  N  T  R  N  L  G  I  V  T  L  R  R  R  R  R  N  L  P  V  L  S  K  D  A  R  G  F  *  P  S  Q  T  L  A  L  A  R  Y  A  G  F  K  F  A  S  D  T  G  S  L  L  I  T  P  V  T  P  L  L  H  H  H  S  C  C  *  R  N  P  I  T  S  F  *  L  L  C  L  Q  G  M  G  K  I  V  G  I  K  V  V  P  H  L  Q  A  L  R  T  L  L  *  K  L  V  D  R  F  T  A  H  Y  Y  S  F  V  F  C  N  Y  I  I  L  W  K  T  M  L  F  Y  F  Q  F  L  P  P  F  Y  D  K  T  T  N  L  R  M  T  *  Q  F  G  I  I  *  S  </second_frame>
            <third_frame>   E  Q  K  Y  T  K  E  E  N  G  R  R  N  R  S  L  S  R  F  R  *  T  L  P  T  I  *  L  P  S  T  R  F  S  P  F  Y  L  P  C  L  F  K   : G  I  L  C  G  T  *  I  M  Q  V  S  *  M  P  K  I  *  L  *  Q  P  N  R  F  G  L  R  N  L  F  Y  V  H  G  N  Y  R  L  *  S  *  R  P  Q  S  N  I  T  K  T  R  G  I  W  G  L  *  P  *  E  E  E  E  E  T  Y  L  S  C  Q  K  M  Q  G  D  F  D  L  L  K  H  *  H  L  Q  D  M  P  D  S  S  L  P  Q  T  Q  V  P  C  *  S  R  L  *  P  H  F  F  I  I  T  A  V  A  K  G  T  Q  *  Q  V  F  D  C  F  A  C  K  E  W  E  R  L  W  E  *  K  S  C  L  I  S  K  P  C  E  P  F  C  E  S  L  L  I  V  S  Q  H  I  T  I  H  L  S  F  V  I  T  L  F  Y  G  K  Q  C  C  S  I  F  N  F  S  L  P  S  M  I  K  Q  R  I  *  E  *  H  N  N  S  E  S  Y  N  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43275" stop="43406"/>
                    <exon start="43513" stop="43974"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNKNTRKKKMEGGTEAYPDLGRHCQLSDCHQLDFLPFTCHACLKVFCVEHRSCKSHECPKSDFNSRIVLVCEICSMSMETTGCKVEDHKAILQKHEESGDCDPKKKKKKPTCPVKRCKGILTFSNTSTCKICRIQVCLRHRFPADHACNPTSSSSQLLLKEPNNKFLTALLARNGKDCGNKSRASSPSPANPSVKAC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="44058" PGL_stop="43504"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44058" e_stop="43504"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="44058" e_stop="43504" e_length="555"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44058" stop="43504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283504" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAATTGAAAATAGAACAACATTGTTTTCCATAAAATAATGTAATTACAAAAGACAAATGAATAGTAATGTGCTGTGAAACGATCAACAAGCTTTCACAGAAGGGTTCGCAGGGCTTGGAGATGAGGCACGACTTTTATTCCCACAATCTTTCCCATTCCTTGCAAGCAAAGCAGTCAAAAACTTGTTATTGGGTTCCTTTAGCAACAGCTGTGATGATGAAGAAGTGGGGTTACAGGCGTGATCAGCAGGGAACCTGTGTCTGAGGCAAACTTGAATCCGGCATATCTTGCAAGTGCTAGTGTTTGAGAAGGTCAAAATCCCCTTGCATCTTTTGACAGGACAGGTAGGTTTCTTCTTCTTCTTCTTAGGGTCACAATCCCCAGATTCCTCGTGTTTTTGTAATATTGCTTTGTGGTCTTCAACTTTACAGCCGGTAGTTTCCATGGACATAGAACAAATTTCGCAAACCAAAACGATTCGGCTGTTAAAGTCAGATTTTGGGCATTCATGAGACTTGCATGATCTATGTTCCACACAAAATACCTGCACATC</gDNA_template>
            <first_frame> R  N  *  K  *  N  N  I  V  F  H  K  I  M  *  L  Q  K  T  N  E  *  *  C  A  V  K  R  S  T  S  F  H  R  R  V  R  R  A  W  R  *  G  T  T  F  I  P  T  I  F  P  I  P  C  K  Q  S  S  Q  K  L  V  I  G  F  L  *  Q  Q  L  *  *  *  R  S  G  V  T  G  V  I  S  R  E  P  V  S  E  A  N  L  N  P  A  Y  L  A  S  A  S  V  *  E  G  Q  N  P  L  A  S  F  D  R  T  G  R  F  L  L  L  L  L  R  V  T  I  P  R  F  L  V  F  L  *  Y  C  F  V  V  F  N  F  T  A  G  S  F  H  G  H  R  T  N  F  A  N  Q  N  D  S  A  V  K  V  R  F  W  A  F  M  R  L  A  *  S  M  F  H  T  K  Y  L  H  I </first_frame>
            <second_frame>  E  I  E  N  R  T  T  L  F  S  I  K  *  C  N  Y  K  R  Q  M  N  S  N  V  L  *  N  D  Q  Q  A  F  T  E  G  F  A  G  L  G  D  E  A  R  L  L  F  P  Q  S  F  P  F  L  A  S  K  A  V  K  N  L  L  L  G  S  F  S  N  S  C  D  D  E  E  V  G  L  Q  A  *  S  A  G  N  L  C  L  R  Q  T  *  I  R  H  I  L  Q  V  L  V  F  E  K  V  K  I  P  L  H  L  L  T  G  Q  V  G  F  F  F  F  F  L  G  S  Q  S  P  D  S  S  C  F  C  N  I  A  L  W  S  S  T  L  Q  P  V  V  S  M  D  I  E  Q  I  S  Q  T  K  T  I  R  L  L  K  S  D  F  G  H  S  *  D  L  H  D  L  C  S  T  Q  N  T  C  T   </second_frame>
            <third_frame>   K  L  K  I  E  Q  H  C  F  P  *  N  N  V  I  T  K  D  K  *  I  V  M  C  C  E  T  I  N  K  L  S  Q  K  G  S  Q  G  L  E  M  R  H  D  F  Y  S  H  N  L  S  H  S  L  Q  A  K  Q  S  K  T  C  Y  W  V  P  L  A  T  A  V  M  M  K  K  W  G  Y  R  R  D  Q  Q  G  T  C  V  *  G  K  L  E  S  G  I  S  C  K  C  *  C  L  R  R  S  K  S  P  C  I  F  *  Q  D  R  *  V  S  S  S  S  S  *  G  H  N  P  Q  I  P  R  V  F  V  I  L  L  C  G  L  Q  L  Y  S  R  *  F  P  W  T  *  N  K  F  R  K  P  K  R  F  G  C  *  S  Q  I  L  G  I  H  E  T  C  M  I  Y  V  P  H  K  I  P  A  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43781" stop="43545"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IRHILQVLVFEKVKIPLHLLTGQVGFFFFFLGSQSPDSSCFCNIALWSSTLQPVVSMDIEQISQTKTIRLLKSDFGHS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43996" stop="43793"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IVMCCETINKLSQKGSQGLEMRHDFYSHNLSHSLQAKQSKTCYWVPLATAVMMKKWGYRRDQQGTCV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="48049" PGL_stop="44087"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48049" e_stop="48005"/>
            <exon e_start="47909" e_stop="47833"/>
            <exon e_start="47734" e_stop="47604"/>
            <exon e_start="47447" e_stop="47398"/>
            <exon e_start="47277" e_stop="46775"/>
            <exon e_start="45951" e_stop="45871"/>
            <exon e_start="44734" e_stop="44672"/>
            <exon e_start="44431" e_stop="44087"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.946" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.874" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.925" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48049" e_stop="48005" e_length="45"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.946">
            <gDNA_intron_boundary i_start="48004" i_stop="47910" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47909" e_stop="47833" e_length="77"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.996">
            <gDNA_intron_boundary i_start="47832" i_stop="47735" i_length="98"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="47734" e_stop="47604" e_length="131"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.874">
            <gDNA_intron_boundary i_start="47603" i_stop="47448" i_length="156"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="47447" e_stop="47398" e_length="50"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.974">
            <gDNA_intron_boundary i_start="47397" i_stop="47278" i_length="120"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="47277" e_stop="46775" e_length="503"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.981">
            <gDNA_intron_boundary i_start="46774" i_stop="45952" i_length="823"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="45951" e_stop="45871" e_length="81"/>
          </exon>
          <intron i_serial="6" don_prob="0.971" acc_prob="0.998">
            <gDNA_intron_boundary i_start="45870" i_stop="44735" i_length="1136"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="44734" e_stop="44672" e_length="63"/>
          </exon>
          <intron i_serial="7" don_prob="0.986" acc_prob="0.925">
            <gDNA_intron_boundary i_start="44671" i_stop="44432" i_length="240"/>
          </intron>
          <exon e_serial="8" e_score="0.997">
            <gDNA_exon_boundary e_start="44431" e_stop="44087" e_length="345"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48049" stop="48005"/>
              <exon start="47909" stop="47833"/>
              <exon start="47734" stop="47604"/>
              <exon start="47447" stop="47398"/>
              <exon start="47277" stop="46853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48034" stop="48005"/>
              <exon start="47909" stop="47833"/>
              <exon start="47734" stop="47604"/>
              <exon start="47447" stop="47398"/>
              <exon start="47277" stop="47041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48034" stop="48005"/>
              <exon start="47909" stop="47833"/>
              <exon start="47734" stop="47604"/>
              <exon start="47447" stop="47398"/>
              <exon start="47277" stop="47182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48014" stop="48005"/>
              <exon start="47909" stop="47833"/>
              <exon start="47734" stop="47604"/>
              <exon start="47447" stop="47398"/>
              <exon start="47277" stop="46979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E588997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48012" stop="48005"/>
              <exon start="47909" stop="47833"/>
              <exon start="47734" stop="47604"/>
              <exon start="47447" stop="47398"/>
              <exon start="47277" stop="46944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48008" stop="48005"/>
              <exon start="47909" stop="47833"/>
              <exon start="47734" stop="47604"/>
              <exon start="47447" stop="47398"/>
              <exon start="47277" stop="46775"/>
              <exon start="45951" stop="45871"/>
              <exon start="44734" stop="44687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47881" stop="47833"/>
              <exon start="47734" stop="47604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47265" stop="46775"/>
              <exon start="45951" stop="45871"/>
              <exon start="44734" stop="44672"/>
              <exon start="44431" stop="44390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47265" stop="46775"/>
              <exon start="45951" stop="45871"/>
              <exon start="44734" stop="44672"/>
              <exon start="44431" stop="44401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432638" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47207" stop="46775"/>
              <exon start="45951" stop="45871"/>
              <exon start="44734" stop="44672"/>
              <exon start="44431" stop="44194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432639" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47120" stop="46775"/>
              <exon start="45951" stop="45871"/>
              <exon start="44734" stop="44672"/>
              <exon start="44431" stop="44209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432332" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47034" stop="46775"/>
              <exon start="45951" stop="45871"/>
              <exon start="44734" stop="44672"/>
              <exon start="44431" stop="44122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46979" stop="46775"/>
              <exon start="45951" stop="45871"/>
              <exon start="44734" stop="44672"/>
              <exon start="44431" stop="44087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544442" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTGCTCGCTGAGTTTTGGAGTATAGACATATGGAGTATAACCAG : ATTTAGCTGTGCATAAGTTTTGACCATCTCAAATGTCAAGGCCACAGGTCACCATCACTTTGGGACGCTCGGGTCAA : AAAGTGGTTAAGCGATCATCAGCTTCTCAGGGTAATGGTTTTAGTCAACAGACATTGTCAAGAGGCAAAAGGTCATTAGGAGAGACCTATAGGACTGACTCTGAGGATCCTACAAAATCCCTTCGTAAACG : TGTGCGAGGGGATAAAGATGCAGGAGGTTCCAGATATGGCAGACAGAATG : GTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAAGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGCTGGTGTTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGCAGGATATGACCTCATCGACTCTTCTCAGCTAAAAGTCCTTACCCCTGTGACCATGAGGTCAGCACTGGGTGCCAGGAATCCATTGACAGGTCTTCCCTCTGCAAATGGAGGCATGCTACACAGACCATATCCT : GATCAACCTCCTTTGACCGTTGCCAGTCTATTAAATTCGCTCGGTTTGGGGAAATACACTATCCACTTTCAAGCCGAGGAG : GTAGACATGGCTGCACTGAAGCAAATGGGGGACCGTGACCTGAAGGAATTGGGGATACCAATG : GGACCCAGGAAGAAGATTCTCTTGGCTATGCTTTCCCAAACTTAGAAGACCTGTGTAGTATGGTAGTTATATTTATTCAATTCAATGCTCCTGTTTCTAAGCTGAAGTTATCAAGCTGGCTGTTCTTGGGAAATGTATATAAAGGGTAGCGGTATAATGCTGGAGTATTTGGCTGATATTTGTTGTATAATAGACAGTATATAACAGTGAAATTATCTCTTTCGTTTTTGGGAGAGGCTGATCTTTTTGTGAATTTATTTTAGAGAACTGTTCAACATGAGATGCGGTTTGAAGTTATTCATATAGAGAAGATTATATGATTCCGAATTGTTATGTCATTCTTAA</gDNA_template>
            <first_frame> L  A  R  *  V  L  E  Y  R  H  M  E  Y  N  Q  :  I  *  L  C  I  S  F  D  H  L  K  C  Q  G  H  R  S  P  S  L  W  D  A  R  V  K :   K  W  L  S  D  H  Q  L  L  R  V  M  V  L  V  N  R  H  C  Q  E  A  K  G  H  *  E  R  P  I  G  L  T  L  R  I  L  Q  N  P  F  V  N   : V  C  E  G  I  K  M  Q  E  V  P  D  M  A  D  R  M  :  V  H  A  L  G  K  M  T  S  D  *  N  *  C  T  E  E  G  K  G  K  F  I  C  R  L  K  K  E  K  R  S  S  I  R  G  *  Q  E  V  F  N  L  Q  N  N  L  T  R  G  L  S  P  A  A  N  R  R  Q  E  L  A  N  C  F  R  *  R  Q  L  D  P  P  I  H  H  K  L  L  L  V  L  D  Q  D  P  L  I  D  L  Q  T  I  L  K  K  S  L  L  Q  G  I  S  L  Q  L  S  M  Y  R  Q  *  G  Q  P  K  L  Q  E  W  F  I  W  Q  D  M  T  S  S  T  L  L  S  *  K  S  L  P  L  *  P  *  G  Q  H  W  V  P  G  I  H  *  Q  V  F  P  L  Q  M  E  A  C  Y  T  D  H  I  L :   I  N  L  L  *  P  L  P  V  Y  *  I  R  S  V  W  G  N  T  L  S  T  F  K  P  R  R :   *  T  W  L  H  *  S  K  W  G  T  V  T  *  R  N  W  G  Y  Q  W :   D  P  G  R  R  F  S  W  L  C  F  P  K  L  R  R  P  V  *  Y  G  S  Y  I  Y  S  I  Q  C  S  C  F  *  A  E  V  I  K  L  A  V  L  G  K  C  I  *  R  V  A  V  *  C  W  S  I  W  L  I  F  V  V  *  *  T  V  Y  N  S  E  I  I  S  F  V  F  G  R  G  *  S  F  C  E  F  I  L  E  N  C  S  T  *  D  A  V  *  S  Y  S  Y  R  E  D  Y  M  I  P  N  C  Y  V  I  L   </first_frame>
            <second_frame>  L  L  A  E  F  W  S  I  D  I  W  S  I  T  R :   F  S  C  A  *  V  L  T  I  S  N  V  K  A  T  G  H  H  H  F  G  T  L  G  S   : K  S  G  *  A  I  I  S  F  S  G  *  W  F  *  S  T  D  I  V  K  R  Q  K  V  I  R  R  D  L  *  D  *  L  *  G  S  Y  K  I  P  S  *  T  :  C  A  R  G  *  R  C  R  R  F  Q  I  W  Q  T  E  W :   C  T  H  W  E  K  *  P  P  T  E  T  N  A  Q  K  K  A  K  G  N  S  S  A  D  *  R  K  K  K  G  A  A  *  E  D  D  K  K  C  S  I  C  R  T  I  S  Q  E  A  C  H  Q  Q  P  T  V  V  R  S  *  R  I  A  S  D  R  G  N  *  I  L  L  Y  I  T  N  C  C  W  C  *  I  K  I  P  L  *  T  C  K  R  F  *  R  S  L  F  F  K  E  Y  H  C  S  S  A  C  T  V  S  K  A  S  R  S  F  K  N  G  S  Y  G  R  I  *  P  H  R  L  F  S  A  K  S  P  Y  P  C  D  H  E  V  S  T  G  C  Q  E  S  I  D  R  S  S  L  C  K  W  R  H  A  T  Q  T  I  S   : *  S  T  S  F  D  R  C  Q  S  I  K  F  A  R  F  G  E  I  H  Y  P  L  S  S  R  G   : G  R  H  G  C  T  E  A  N  G  G  P  *  P  E  G  I  G  D  T  N   : G  T  Q  E  E  D  S  L  G  Y  A  F  P  N  L  E  D  L  C  S  M  V  V  I  F  I  Q  F  N  A  P  V  S  K  L  K  L  S  S  W  L  F  L  G  N  V  Y  K  G  *  R  Y  N  A  G  V  F  G  *  Y  L  L  Y  N  R  Q  Y  I  T  V  K  L  S  L  S  F  L  G  E  A  D  L  F  V  N  L  F  *  R  T  V  Q  H  E  M  R  F  E  V  I  H  I  E  K  I  I  *  F  R  I  V  M  S  F  L  </second_frame>
            <third_frame>   C  S  L  S  F  G  V  *  T  Y  G  V  *  P   : D  L  A  V  H  K  F  *  P  S  Q  M  S  R  P  Q  V  T  I  T  L  G  R  S  G  Q  :  K  V  V  K  R  S  S  A  S  Q  G  N  G  F  S  Q  Q  T  L  S  R  G  K  R  S  L  G  E  T  Y  R  T  D  S  E  D  P  T  K  S  L  R  K  R :   V  R  G  D  K  D  A  G  G  S  R  Y  G  R  Q  N   : G  A  R  I  G  K  N  D  L  R  L  K  L  M  H  R  R  R  Q  R  E  I  H  L  Q  I  E  E  R  K  K  E  Q  H  K  R  M  T  R  S  V  Q  S  A  E  Q  S  H  K  R  L  V  T  S  S  Q  P  S  S  G  A  S  E  L  L  Q  I  E  A  I  R  S  S  Y  T  S  Q  T  A  A  G  V  R  S  R  S  P  Y  R  L  A  N  D  S  K  E  V  S  S  S  R  N  I  T  A  A  Q  H  V  P  S  V  R  P  A  E  A  S  R  M  V  H  M  A  G  Y  D  L  I  D  S  S  Q  L  K  V  L  T  P  V  T  M  R  S  A  L  G  A  R  N  P  L  T  G  L  P  S  A  N  G  G  M  L  H  R  P  Y  P  :  D  Q  P  P  L  T  V  A  S  L  L  N  S  L  G  L  G  K  Y  T  I  H  F  Q  A  E  E  :  V  D  M  A  A  L  K  Q  M  G  D  R  D  L  K  E  L  G  I  P  M  :  G  P  R  K  K  I  L  L  A  M  L  S  Q  T  *  K  T  C  V  V  W  *  L  Y  L  F  N  S  M  L  L  F  L  S  *  S  Y  Q  A  G  C  S  W  E  M  Y  I  K  G  S  G  I  M  L  E  Y  L  A  D  I  C  C  I  I  D  S  I  *  Q  *  N  Y  L  F  R  F  W  E  R  L  I  F  L  *  I  Y  F  R  E  L  F  N  M  R  C  G  L  K  L  F  I  *  R  R  L  Y  D  S  E  L  L  C  H  S  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47886" stop="47833"/>
                    <exon start="47734" stop="47604"/>
                    <exon start="47447" stop="47398"/>
                    <exon start="47277" stop="46775"/>
                    <exon start="45951" stop="45871"/>
                    <exon start="44734" stop="44672"/>
                    <exon start="44431" stop="44387"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>924</number_coding_nucleotides>
                  <number_encoded_amino_acids>308</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSQMSRPQVTITLGRSGQKVVKRSSASQGNGFSQQTLSRGKRSLGETYRTDSEDPTKSLRKRVRGDKDAGGSRYGRQNGARIGKNDLRLKLMHRRRQREIHLQIEERKKEQHKRMTRSVQSAEQSHKRLVTSSQPSSGASELLQIEAIRSSYTSQTAAGVRSRSPYRLANDSKEVSSSRNITAAQHVPSVRPAEASRMVHMAGYDLIDSSQLKVLTPVTMRSALGARNPLTGLPSANGGMLHRPYPDQPPLTVASLLNSLGLGKYTIHFQAEEVDMAALKQMGDRDLKELGIPMGPRKKILLAMLSQT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="48022" e_stop="48005"/>
            <exon e_start="47909" e_stop="47833"/>
            <exon e_start="47734" e_stop="47398"/>
            <exon e_start="47277" e_stop="46775"/>
            <exon e_start="45951" e_stop="45871"/>
            <exon e_start="44734" e_stop="44672"/>
            <exon e_start="44431" e_stop="44087"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.946" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.981" e_score="0.961"/>
          <exon-intron don_prob="0.971" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.925" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48022" e_stop="48005" e_length="18"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.946">
            <gDNA_intron_boundary i_start="48004" i_stop="47910" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47909" e_stop="47833" e_length="77"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.996">
            <gDNA_intron_boundary i_start="47832" i_stop="47735" i_length="98"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="47734" e_stop="47398" e_length="337"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.974">
            <gDNA_intron_boundary i_start="47397" i_stop="47278" i_length="120"/>
          </intron>
          <exon e_serial="4" e_score="0.961">
            <gDNA_exon_boundary e_start="47277" e_stop="46775" e_length="503"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.981">
            <gDNA_intron_boundary i_start="46774" i_stop="45952" i_length="823"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="45951" e_stop="45871" e_length="81"/>
          </exon>
          <intron i_serial="5" don_prob="0.971" acc_prob="0.998">
            <gDNA_intron_boundary i_start="45870" i_stop="44735" i_length="1136"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="44734" e_stop="44672" e_length="63"/>
          </exon>
          <intron i_serial="6" don_prob="0.986" acc_prob="0.925">
            <gDNA_intron_boundary i_start="44671" i_stop="44432" i_length="240"/>
          </intron>
          <exon e_serial="7" e_score="0.997">
            <gDNA_exon_boundary e_start="44431" e_stop="44087" e_length="345"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48022" stop="48005"/>
              <exon start="47909" stop="47833"/>
              <exon start="47734" stop="47398"/>
              <exon start="47277" stop="46908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48021" stop="48005"/>
              <exon start="47909" stop="47833"/>
              <exon start="47734" stop="47398"/>
              <exon start="47277" stop="47149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47881" stop="47833"/>
              <exon start="47734" stop="47604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47265" stop="46775"/>
              <exon start="45951" stop="45871"/>
              <exon start="44734" stop="44672"/>
              <exon start="44431" stop="44390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47265" stop="46775"/>
              <exon start="45951" stop="45871"/>
              <exon start="44734" stop="44672"/>
              <exon start="44431" stop="44401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432638" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47207" stop="46775"/>
              <exon start="45951" stop="45871"/>
              <exon start="44734" stop="44672"/>
              <exon start="44431" stop="44194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432639" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47120" stop="46775"/>
              <exon start="45951" stop="45871"/>
              <exon start="44734" stop="44672"/>
              <exon start="44431" stop="44209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432332" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47034" stop="46775"/>
              <exon start="45951" stop="45871"/>
              <exon start="44734" stop="44672"/>
              <exon start="44431" stop="44122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46979" stop="46775"/>
              <exon start="45951" stop="45871"/>
              <exon start="44734" stop="44672"/>
              <exon start="44431" stop="44087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544442" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATATGGAGTATAACCAG : ATTTAGCTGTGCATAAGTTTTGACCATCTCAAATGTCAAGGCCACAGGTCACCATCACTTTGGGACGCTCGGGTCAA : AAAGTGGTTAAGCGATCATCAGCTTCTCAGGGTAATGGTTTTAGTCAACAGACATTGTCAAGAGGCAAAAGGTCATTAGGAGAGACCTATAGGACTGACTCTGAGGATCCTACAAAATCCCTTCGTAAACGGTAAAATCTTTTGTTTGTTGTTCTGGTTGAGCTAATGTAGGTTGTATCTAATTTATTGTTTTCAGAATAATGGAAGGAATATAAAAAAACTATCAAAGTTAGAGTGGTAGTTTTGATTTTATTTGATAGTGGAAGTTTTGCTATTGTTTTTGCAAGTGTGCGAGGGGATAAAGATGCAGGAGGTTCCAGATATGGCAGACAGAATG : GTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAAGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGCTGGTGTTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGCAGGATATGACCTCATCGACTCTTCTCAGCTAAAAGTCCTTACCCCTGTGACCATGAGGTCAGCACTGGGTGCCAGGAATCCATTGACAGGTCTTCCCTCTGCAAATGGAGGCATGCTACACAGACCATATCCT : GATCAACCTCCTTTGACCGTTGCCAGTCTATTAAATTCGCTCGGTTTGGGGAAATACACTATCCACTTTCAAGCCGAGGAG : GTAGACATGGCTGCACTGAAGCAAATGGGGGACCGTGACCTGAAGGAATTGGGGATACCAATG : GGACCCAGGAAGAAGATTCTCTTGGCTATGCTTTCCCAAACTTAGAAGACCTGTGTAGTATGGTAGTTATATTTATTCAATTCAATGCTCCTGTTTCTAAGCTGAAGTTATCAAGCTGGCTGTTCTTGGGAAATGTATATAAAGGGTAGCGGTATAATGCTGGAGTATTTGGCTGATATTTGTTGTATAATAGACAGTATATAACAGTGAAATTATCTCTTTCGTTTTTGGGAGAGGCTGATCTTTTTGTGAATTTATTTTAGAGAACTGTTCAACATGAGATGCGGTTTGAAGTTATTCATATAGAGAAGATTATATGATTCCGAATTGTTATGTCATTCTTAA</gDNA_template>
            <first_frame> H  M  E  Y  N  Q  :  I  *  L  C  I  S  F  D  H  L  K  C  Q  G  H  R  S  P  S  L  W  D  A  R  V  K :   K  W  L  S  D  H  Q  L  L  R  V  M  V  L  V  N  R  H  C  Q  E  A  K  G  H  *  E  R  P  I  G  L  T  L  R  I  L  Q  N  P  F  V  N  G  K  I  F  C  L  L  F  W  L  S  *  C  R  L  Y  L  I  Y  C  F  Q  N  N  G  R  N  I  K  K  L  S  K  L  E  W  *  F  *  F  Y  L  I  V  E  V  L  L  L  F  L  Q  V  C  E  G  I  K  M  Q  E  V  P  D  M  A  D  R  M  :  V  H  A  L  G  K  M  T  S  D  *  N  *  C  T  E  E  G  K  G  K  F  I  C  R  L  K  K  E  K  R  S  S  I  R  G  *  Q  E  V  F  N  L  Q  N  N  L  T  R  G  L  S  P  A  A  N  R  R  Q  E  L  A  N  C  F  R  *  R  Q  L  D  P  P  I  H  H  K  L  L  L  V  L  D  Q  D  P  L  I  D  L  Q  T  I  L  K  K  S  L  L  Q  G  I  S  L  Q  L  S  M  Y  R  Q  *  G  Q  P  K  L  Q  E  W  F  I  W  Q  D  M  T  S  S  T  L  L  S  *  K  S  L  P  L  *  P  *  G  Q  H  W  V  P  G  I  H  *  Q  V  F  P  L  Q  M  E  A  C  Y  T  D  H  I  L :   I  N  L  L  *  P  L  P  V  Y  *  I  R  S  V  W  G  N  T  L  S  T  F  K  P  R  R :   *  T  W  L  H  *  S  K  W  G  T  V  T  *  R  N  W  G  Y  Q  W :   D  P  G  R  R  F  S  W  L  C  F  P  K  L  R  R  P  V  *  Y  G  S  Y  I  Y  S  I  Q  C  S  C  F  *  A  E  V  I  K  L  A  V  L  G  K  C  I  *  R  V  A  V  *  C  W  S  I  W  L  I  F  V  V  *  *  T  V  Y  N  S  E  I  I  S  F  V  F  G  R  G  *  S  F  C  E  F  I  L  E  N  C  S  T  *  D  A  V  *  S  Y  S  Y  R  E  D  Y  M  I  P  N  C  Y  V  I  L   </first_frame>
            <second_frame>  I  W  S  I  T  R :   F  S  C  A  *  V  L  T  I  S  N  V  K  A  T  G  H  H  H  F  G  T  L  G  S   : K  S  G  *  A  I  I  S  F  S  G  *  W  F  *  S  T  D  I  V  K  R  Q  K  V  I  R  R  D  L  *  D  *  L  *  G  S  Y  K  I  P  S  *  T  V  K  S  F  V  C  C  S  G  *  A  N  V  G  C  I  *  F  I  V  F  R  I  M  E  G  I  *  K  N  Y  Q  S  *  S  G  S  F  D  F  I  *  *  W  K  F  C  Y  C  F  C  K  C  A  R  G  *  R  C  R  R  F  Q  I  W  Q  T  E  W :   C  T  H  W  E  K  *  P  P  T  E  T  N  A  Q  K  K  A  K  G  N  S  S  A  D  *  R  K  K  K  G  A  A  *  E  D  D  K  K  C  S  I  C  R  T  I  S  Q  E  A  C  H  Q  Q  P  T  V  V  R  S  *  R  I  A  S  D  R  G  N  *  I  L  L  Y  I  T  N  C  C  W  C  *  I  K  I  P  L  *  T  C  K  R  F  *  R  S  L  F  F  K  E  Y  H  C  S  S  A  C  T  V  S  K  A  S  R  S  F  K  N  G  S  Y  G  R  I  *  P  H  R  L  F  S  A  K  S  P  Y  P  C  D  H  E  V  S  T  G  C  Q  E  S  I  D  R  S  S  L  C  K  W  R  H  A  T  Q  T  I  S   : *  S  T  S  F  D  R  C  Q  S  I  K  F  A  R  F  G  E  I  H  Y  P  L  S  S  R  G   : G  R  H  G  C  T  E  A  N  G  G  P  *  P  E  G  I  G  D  T  N   : G  T  Q  E  E  D  S  L  G  Y  A  F  P  N  L  E  D  L  C  S  M  V  V  I  F  I  Q  F  N  A  P  V  S  K  L  K  L  S  S  W  L  F  L  G  N  V  Y  K  G  *  R  Y  N  A  G  V  F  G  *  Y  L  L  Y  N  R  Q  Y  I  T  V  K  L  S  L  S  F  L  G  E  A  D  L  F  V  N  L  F  *  R  T  V  Q  H  E  M  R  F  E  V  I  H  I  E  K  I  I  *  F  R  I  V  M  S  F  L  </second_frame>
            <third_frame>   Y  G  V  *  P   : D  L  A  V  H  K  F  *  P  S  Q  M  S  R  P  Q  V  T  I  T  L  G  R  S  G  Q  :  K  V  V  K  R  S  S  A  S  Q  G  N  G  F  S  Q  Q  T  L  S  R  G  K  R  S  L  G  E  T  Y  R  T  D  S  E  D  P  T  K  S  L  R  K  R  *  N  L  L  F  V  V  L  V  E  L  M  *  V  V  S  N  L  L  F  S  E  *  W  K  E  Y  K  K  T  I  K  V  R  V  V  V  L  I  L  F  D  S  G  S  F  A  I  V  F  A  S  V  R  G  D  K  D  A  G  G  S  R  Y  G  R  Q  N   : G  A  R  I  G  K  N  D  L  R  L  K  L  M  H  R  R  R  Q  R  E  I  H  L  Q  I  E  E  R  K  K  E  Q  H  K  R  M  T  R  S  V  Q  S  A  E  Q  S  H  K  R  L  V  T  S  S  Q  P  S  S  G  A  S  E  L  L  Q  I  E  A  I  R  S  S  Y  T  S  Q  T  A  A  G  V  R  S  R  S  P  Y  R  L  A  N  D  S  K  E  V  S  S  S  R  N  I  T  A  A  Q  H  V  P  S  V  R  P  A  E  A  S  R  M  V  H  M  A  G  Y  D  L  I  D  S  S  Q  L  K  V  L  T  P  V  T  M  R  S  A  L  G  A  R  N  P  L  T  G  L  P  S  A  N  G  G  M  L  H  R  P  Y  P  :  D  Q  P  P  L  T  V  A  S  L  L  N  S  L  G  L  G  K  Y  T  I  H  F  Q  A  E  E  :  V  D  M  A  A  L  K  Q  M  G  D  R  D  L  K  E  L  G  I  P  M  :  G  P  R  K  K  I  L  L  A  M  L  S  Q  T  *  K  T  C  V  V  W  *  L  Y  L  F  N  S  M  L  L  F  L  S  *  S  Y  Q  A  G  C  S  W  E  M  Y  I  K  G  S  G  I  M  L  E  Y  L  A  D  I  C  C  I  I  D  S  I  *  Q  *  N  Y  L  F  R  F  W  E  R  L  I  F  L  *  I  Y  F  R  E  L  F  N  M  R  C  G  L  K  L  F  I  *  R  R  L  Y  D  S  E  L  L  C  H  S  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47533" stop="47398"/>
                    <exon start="47277" stop="46775"/>
                    <exon start="45951" stop="45871"/>
                    <exon start="44734" stop="44672"/>
                    <exon start="44431" stop="44387"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>825</number_coding_nucleotides>
                  <number_encoded_amino_acids>275</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WKEYKKTIKVRVVVLILFDSGSFAIVFASVRGDKDAGGSRYGRQNGARIGKNDLRLKLMHRRRQREIHLQIEERKKEQHKRMTRSVQSAEQSHKRLVTSSQPSSGASELLQIEAIRSSYTSQTAAGVRSRSPYRLANDSKEVSSSRNITAAQHVPSVRPAEASRMVHMAGYDLIDSSQLKVLTPVTMRSALGARNPLTGLPSANGGMLHRPYPDQPPLTVASLLNSLGLGKYTIHFQAEEVDMAALKQMGDRDLKELGIPMGPRKKILLAMLSQT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="47282" e_stop="46775"/>
            <exon e_start="45951" e_stop="45871"/>
            <exon e_start="44734" e_stop="44672"/>
            <exon e_start="44431" e_stop="44087"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.981" e_score="0.998"/>
          <exon-intron don_prob="0.971" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.925" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="47282" e_stop="46775" e_length="508"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.981">
            <gDNA_intron_boundary i_start="46774" i_stop="45952" i_length="823"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="45951" e_stop="45871" e_length="81"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="0.998">
            <gDNA_intron_boundary i_start="45870" i_stop="44735" i_length="1136"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="44734" e_stop="44672" e_length="63"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.925">
            <gDNA_intron_boundary i_start="44671" i_stop="44432" i_length="240"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="44431" e_stop="44087" e_length="345"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47282" stop="46775"/>
              <exon start="45951" stop="45871"/>
              <exon start="44734" stop="44672"/>
              <exon start="44431" stop="44426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47282" stop="46838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47265" stop="46775"/>
              <exon start="45951" stop="45871"/>
              <exon start="44734" stop="44672"/>
              <exon start="44431" stop="44390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47265" stop="46775"/>
              <exon start="45951" stop="45871"/>
              <exon start="44734" stop="44672"/>
              <exon start="44431" stop="44401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432638" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47207" stop="46775"/>
              <exon start="45951" stop="45871"/>
              <exon start="44734" stop="44672"/>
              <exon start="44431" stop="44194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432639" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47120" stop="46775"/>
              <exon start="45951" stop="45871"/>
              <exon start="44734" stop="44672"/>
              <exon start="44431" stop="44209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432332" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47034" stop="46775"/>
              <exon start="45951" stop="45871"/>
              <exon start="44734" stop="44672"/>
              <exon start="44431" stop="44122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46979" stop="46775"/>
              <exon start="45951" stop="45871"/>
              <exon start="44734" stop="44672"/>
              <exon start="44431" stop="44087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544442" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAGGTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAAGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGCTGGTGTTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGCAGGATATGACCTCATCGACTCTTCTCAGCTAAAAGTCCTTACCCCTGTGACCATGAGGTCAGCACTGGGTGCCAGGAATCCATTGACAGGTCTTCCCTCTGCAAATGGAGGCATGCTACACAGACCATATCCT : GATCAACCTCCTTTGACCGTTGCCAGTCTATTAAATTCGCTCGGTTTGGGGAAATACACTATCCACTTTCAAGCCGAGGAG : GTAGACATGGCTGCACTGAAGCAAATGGGGGACCGTGACCTGAAGGAATTGGGGATACCAATG : GGACCCAGGAAGAAGATTCTCTTGGCTATGCTTTCCCAAACTTAGAAGACCTGTGTAGTATGGTAGTTATATTTATTCAATTCAATGCTCCTGTTTCTAAGCTGAAGTTATCAAGCTGGCTGTTCTTGGGAAATGTATATAAAGGGTAGCGGTATAATGCTGGAGTATTTGGCTGATATTTGTTGTATAATAGACAGTATATAACAGTGAAATTATCTCTTTCGTTTTTGGGAGAGGCTGATCTTTTTGTGAATTTATTTTAGAGAACTGTTCAACATGAGATGCGGTTTGAAGTTATTCATATAGAGAAGATTATATGATTCCGAATTGTTATGTCATTCTTAA</gDNA_template>
            <first_frame> *  R  C  T  H  W  E  K  *  P  P  T  E  T  N  A  Q  K  K  A  K  G  N  S  S  A  D  *  R  K  K  K  G  A  A  *  E  D  D  K  K  C  S  I  C  R  T  I  S  Q  E  A  C  H  Q  Q  P  T  V  V  R  S  *  R  I  A  S  D  R  G  N  *  I  L  L  Y  I  T  N  C  C  W  C  *  I  K  I  P  L  *  T  C  K  R  F  *  R  S  L  F  F  K  E  Y  H  C  S  S  A  C  T  V  S  K  A  S  R  S  F  K  N  G  S  Y  G  R  I  *  P  H  R  L  F  S  A  K  S  P  Y  P  C  D  H  E  V  S  T  G  C  Q  E  S  I  D  R  S  S  L  C  K  W  R  H  A  T  Q  T  I  S   : *  S  T  S  F  D  R  C  Q  S  I  K  F  A  R  F  G  E  I  H  Y  P  L  S  S  R  G   : G  R  H  G  C  T  E  A  N  G  G  P  *  P  E  G  I  G  D  T  N   : G  T  Q  E  E  D  S  L  G  Y  A  F  P  N  L  E  D  L  C  S  M  V  V  I  F  I  Q  F  N  A  P  V  S  K  L  K  L  S  S  W  L  F  L  G  N  V  Y  K  G  *  R  Y  N  A  G  V  F  G  *  Y  L  L  Y  N  R  Q  Y  I  T  V  K  L  S  L  S  F  L  G  E  A  D  L  F  V  N  L  F  *  R  T  V  Q  H  E  M  R  F  E  V  I  H  I  E  K  I  I  *  F  R  I  V  M  S  F  L  </first_frame>
            <second_frame>  K  G  A  R  I  G  K  N  D  L  R  L  K  L  M  H  R  R  R  Q  R  E  I  H  L  Q  I  E  E  R  K  K  E  Q  H  K  R  M  T  R  S  V  Q  S  A  E  Q  S  H  K  R  L  V  T  S  S  Q  P  S  S  G  A  S  E  L  L  Q  I  E  A  I  R  S  S  Y  T  S  Q  T  A  A  G  V  R  S  R  S  P  Y  R  L  A  N  D  S  K  E  V  S  S  S  R  N  I  T  A  A  Q  H  V  P  S  V  R  P  A  E  A  S  R  M  V  H  M  A  G  Y  D  L  I  D  S  S  Q  L  K  V  L  T  P  V  T  M  R  S  A  L  G  A  R  N  P  L  T  G  L  P  S  A  N  G  G  M  L  H  R  P  Y  P  :  D  Q  P  P  L  T  V  A  S  L  L  N  S  L  G  L  G  K  Y  T  I  H  F  Q  A  E  E  :  V  D  M  A  A  L  K  Q  M  G  D  R  D  L  K  E  L  G  I  P  M  :  G  P  R  K  K  I  L  L  A  M  L  S  Q  T  *  K  T  C  V  V  W  *  L  Y  L  F  N  S  M  L  L  F  L  S  *  S  Y  Q  A  G  C  S  W  E  M  Y  I  K  G  S  G  I  M  L  E  Y  L  A  D  I  C  C  I  I  D  S  I  *  Q  *  N  Y  L  F  R  F  W  E  R  L  I  F  L  *  I  Y  F  R  E  L  F  N  M  R  C  G  L  K  L  F  I  *  R  R  L  Y  D  S  E  L  L  C  H  S  * </second_frame>
            <third_frame>   K  V  H  A  L  G  K  M  T  S  D  *  N  *  C  T  E  E  G  K  G  K  F  I  C  R  L  K  K  E  K  R  S  S  I  R  G  *  Q  E  V  F  N  L  Q  N  N  L  T  R  G  L  S  P  A  A  N  R  R  Q  E  L  A  N  C  F  R  *  R  Q  L  D  P  P  I  H  H  K  L  L  L  V  L  D  Q  D  P  L  I  D  L  Q  T  I  L  K  K  S  L  L  Q  G  I  S  L  Q  L  S  M  Y  R  Q  *  G  Q  P  K  L  Q  E  W  F  I  W  Q  D  M  T  S  S  T  L  L  S  *  K  S  L  P  L  *  P  *  G  Q  H  W  V  P  G  I  H  *  Q  V  F  P  L  Q  M  E  A  C  Y  T  D  H  I  L :   I  N  L  L  *  P  L  P  V  Y  *  I  R  S  V  W  G  N  T  L  S  T  F  K  P  R  R :   *  T  W  L  H  *  S  K  W  G  T  V  T  *  R  N  W  G  Y  Q  W :   D  P  G  R  R  F  S  W  L  C  F  P  K  L  R  R  P  V  *  Y  G  S  Y  I  Y  S  I  Q  C  S  C  F  *  A  E  V  I  K  L  A  V  L  G  K  C  I  *  R  V  A  V  *  C  W  S  I  W  L  I  F  V  V  *  *  T  V  Y  N  S  E  I  I  S  F  V  F  G  R  G  *  S  F  C  E  F  I  L  E  N  C  S  T  *  D  A  V  *  S  Y  S  Y  R  E  D  Y  M  I  P  N  C  Y  V  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47281" stop="46775"/>
                    <exon start="45951" stop="45871"/>
                    <exon start="44734" stop="44672"/>
                    <exon start="44431" stop="44387"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>693</number_coding_nucleotides>
                  <number_encoded_amino_acids>231</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KGARIGKNDLRLKLMHRRRQREIHLQIEERKKEQHKRMTRSVQSAEQSHKRLVTSSQPSSGASELLQIEAIRSSYTSQTAAGVRSRSPYRLANDSKEVSSSRNITAAQHVPSVRPAEASRMVHMAGYDLIDSSQLKVLTPVTMRSALGARNPLTGLPSANGGMLHRPYPDQPPLTVASLLNSLGLGKYTIHFQAEEVDMAALKQMGDRDLKELGIPMGPRKKILLAMLSQT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="55376" PGL_stop="49943"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55376" e_stop="55056"/>
            <exon e_start="54485" e_stop="54373"/>
            <exon e_start="51513" e_stop="51464"/>
            <exon e_start="51333" e_stop="51262"/>
            <exon e_start="50612" e_stop="50552"/>
            <exon e_start="50341" e_stop="49943"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.718" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.854" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.960" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="55376" e_stop="55056" e_length="321"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.959">
            <gDNA_intron_boundary i_start="55055" i_stop="54486" i_length="570"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="54485" e_stop="54373" e_length="113"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.718">
            <gDNA_intron_boundary i_start="54372" i_stop="51514" i_length="2859"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="51513" e_stop="51464" e_length="50"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="51463" i_stop="51334" i_length="130"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="51333" e_stop="51262" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.854">
            <gDNA_intron_boundary i_start="51261" i_stop="50613" i_length="649"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="50612" e_stop="50552" e_length="61"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.960">
            <gDNA_intron_boundary i_start="50551" i_stop="50342" i_length="210"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="50341" e_stop="49943" e_length="399"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55376" stop="55056"/>
              <exon start="54485" stop="54373"/>
              <exon start="51513" stop="51464"/>
              <exon start="51333" stop="51262"/>
              <exon start="50612" stop="50585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55376" stop="55056"/>
              <exon start="54485" stop="54373"/>
              <exon start="51513" stop="51464"/>
              <exon start="51333" stop="51322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55292" stop="55056"/>
              <exon start="54485" stop="54401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55280" stop="55056"/>
              <exon start="54485" stop="54373"/>
              <exon start="51513" stop="51464"/>
              <exon start="51333" stop="51262"/>
              <exon start="50612" stop="50552"/>
              <exon start="50341" stop="49959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55275" stop="55056"/>
              <exon start="54485" stop="54373"/>
              <exon start="51513" stop="51464"/>
              <exon start="51333" stop="51262"/>
              <exon start="50612" stop="50552"/>
              <exon start="50341" stop="50196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55272" stop="55056"/>
              <exon start="54485" stop="54373"/>
              <exon start="51513" stop="51464"/>
              <exon start="51333" stop="51262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55255" stop="55056"/>
              <exon start="54485" stop="54373"/>
              <exon start="51513" stop="51464"/>
              <exon start="51333" stop="51262"/>
              <exon start="50612" stop="50552"/>
              <exon start="50341" stop="49944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55254" stop="55056"/>
              <exon start="54485" stop="54373"/>
              <exon start="51513" stop="51464"/>
              <exon start="51333" stop="51262"/>
              <exon start="50612" stop="50552"/>
              <exon start="50341" stop="49943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55248" stop="55056"/>
              <exon start="54485" stop="54373"/>
              <exon start="51513" stop="51464"/>
              <exon start="51333" stop="51262"/>
              <exon start="50612" stop="50552"/>
              <exon start="50341" stop="50269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305564" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55247" stop="55056"/>
              <exon start="54485" stop="54373"/>
              <exon start="51513" stop="51464"/>
              <exon start="51333" stop="51262"/>
              <exon start="50612" stop="50552"/>
              <exon start="50341" stop="49974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55247" stop="55056"/>
              <exon start="54485" stop="54373"/>
              <exon start="51513" stop="51464"/>
              <exon start="51333" stop="51262"/>
              <exon start="50612" stop="50552"/>
              <exon start="50341" stop="50185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55246" stop="55056"/>
              <exon start="54485" stop="54373"/>
              <exon start="51513" stop="51464"/>
              <exon start="51333" stop="51262"/>
              <exon start="50612" stop="50552"/>
              <exon start="50341" stop="50270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55245" stop="55056"/>
              <exon start="54485" stop="54373"/>
              <exon start="51513" stop="51464"/>
              <exon start="51333" stop="51262"/>
              <exon start="50612" stop="50552"/>
              <exon start="50341" stop="50151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55244" stop="55078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55243" stop="55056"/>
              <exon start="54485" stop="54373"/>
              <exon start="51513" stop="51464"/>
              <exon start="51333" stop="51262"/>
              <exon start="50612" stop="50552"/>
              <exon start="50341" stop="50093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55242" stop="55056"/>
              <exon start="54485" stop="54373"/>
              <exon start="51513" stop="51464"/>
              <exon start="51333" stop="51262"/>
              <exon start="50612" stop="50552"/>
              <exon start="50341" stop="50140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55242" stop="55056"/>
              <exon start="54485" stop="54373"/>
              <exon start="51513" stop="51464"/>
              <exon start="51333" stop="51262"/>
              <exon start="50612" stop="50552"/>
              <exon start="50341" stop="50164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55242" stop="55056"/>
              <exon start="54485" stop="54373"/>
              <exon start="51513" stop="51464"/>
              <exon start="51333" stop="51262"/>
              <exon start="50612" stop="50552"/>
              <exon start="50341" stop="50241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55241" stop="55056"/>
              <exon start="54485" stop="54373"/>
              <exon start="51513" stop="51464"/>
              <exon start="51333" stop="51262"/>
              <exon start="50612" stop="50552"/>
              <exon start="50341" stop="50109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55241" stop="55056"/>
              <exon start="54485" stop="54373"/>
              <exon start="51513" stop="51464"/>
              <exon start="51333" stop="51262"/>
              <exon start="50612" stop="50552"/>
              <exon start="50341" stop="50156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55241" stop="55056"/>
              <exon start="54485" stop="54373"/>
              <exon start="51513" stop="51464"/>
              <exon start="51333" stop="51262"/>
              <exon start="50612" stop="50552"/>
              <exon start="50341" stop="50224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55240" stop="55056"/>
              <exon start="54485" stop="54373"/>
              <exon start="51513" stop="51464"/>
              <exon start="51333" stop="51262"/>
              <exon start="50612" stop="50552"/>
              <exon start="50341" stop="50181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55240" stop="55056"/>
              <exon start="54485" stop="54373"/>
              <exon start="51513" stop="51464"/>
              <exon start="51333" stop="51262"/>
              <exon start="50612" stop="50552"/>
              <exon start="50341" stop="50198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55240" stop="55056"/>
              <exon start="54485" stop="54373"/>
              <exon start="51513" stop="51464"/>
              <exon start="51333" stop="51262"/>
              <exon start="50612" stop="50552"/>
              <exon start="50341" stop="50267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55240" stop="55056"/>
              <exon start="54485" stop="54373"/>
              <exon start="51513" stop="51464"/>
              <exon start="51333" stop="51302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55239" stop="55056"/>
              <exon start="54485" stop="54373"/>
              <exon start="51513" stop="51464"/>
              <exon start="51333" stop="51262"/>
              <exon start="50612" stop="50552"/>
              <exon start="50341" stop="50271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55236" stop="55056"/>
              <exon start="54485" stop="54373"/>
              <exon start="51513" stop="51464"/>
              <exon start="51333" stop="51262"/>
              <exon start="50612" stop="50552"/>
              <exon start="50341" stop="50073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55236" stop="55056"/>
              <exon start="54485" stop="54373"/>
              <exon start="51513" stop="51464"/>
              <exon start="51333" stop="51262"/>
              <exon start="50612" stop="50556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55232" stop="55056"/>
              <exon start="54485" stop="54373"/>
              <exon start="51513" stop="51464"/>
              <exon start="51333" stop="51262"/>
              <exon start="50612" stop="50552"/>
              <exon start="50341" stop="50066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55229" stop="55056"/>
              <exon start="54485" stop="54373"/>
              <exon start="51513" stop="51464"/>
              <exon start="51333" stop="51308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284249" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55227" stop="55056"/>
              <exon start="54485" stop="54398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297608" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55204" stop="55056"/>
              <exon start="54485" stop="54373"/>
              <exon start="51513" stop="51464"/>
              <exon start="51333" stop="51262"/>
              <exon start="50612" stop="50552"/>
              <exon start="50341" stop="50229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55160" stop="55056"/>
              <exon start="54485" stop="54373"/>
              <exon start="51513" stop="51464"/>
              <exon start="51333" stop="51262"/>
              <exon start="50612" stop="50552"/>
              <exon start="50341" stop="50258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55117" stop="55056"/>
              <exon start="54485" stop="54373"/>
              <exon start="51513" stop="51464"/>
              <exon start="51333" stop="51262"/>
              <exon start="50612" stop="50552"/>
              <exon start="50341" stop="49975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55111" stop="55056"/>
              <exon start="54485" stop="54373"/>
              <exon start="51513" stop="51464"/>
              <exon start="51333" stop="51262"/>
              <exon start="50612" stop="50552"/>
              <exon start="50341" stop="50003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350998" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55091" stop="55056"/>
              <exon start="54485" stop="54373"/>
              <exon start="51513" stop="51464"/>
              <exon start="51333" stop="51262"/>
              <exon start="50612" stop="50552"/>
              <exon start="50341" stop="49984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54439" stop="54373"/>
              <exon start="51513" stop="51464"/>
              <exon start="51333" stop="51262"/>
              <exon start="50612" stop="50552"/>
              <exon start="50341" stop="50180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54439" stop="54373"/>
              <exon start="51513" stop="51464"/>
              <exon start="51333" stop="51262"/>
              <exon start="50612" stop="50552"/>
              <exon start="50341" stop="50180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51511" stop="51464"/>
              <exon start="51333" stop="51262"/>
              <exon start="50612" stop="50552"/>
              <exon start="50341" stop="50029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50568" stop="50552"/>
              <exon start="50341" stop="49944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50559" stop="50552"/>
              <exon start="50341" stop="50011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50271" stop="49944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227310" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCGTTTATTAATTTATTTTAATTATAATTTTTCTTCAGATATTAGGTGAAAAGAAAAGGAGAGAACGGATAGTAATATATAAATATCAACGCTGTACGAAAGAGATTTTTTCCTTTCCGAAGTTGTGGTGGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA : TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG : GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG : GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG : GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG : ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTAGGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAACTGGAATCAATTTCCAAAAGCTGCTTTGTGAAGTTCAATCCCAGTCGTCTGACGTGTTAATAATGAAA</gDNA_template>
            <first_frame> P  F  I  N  L  F  *  L  *  F  F  F  R  Y  *  V  K  R  K  G  E  N  G  *  *  Y  I  N  I  N  A  V  R  K  R  F  F  P  F  R  S  C  G  G  *  Q  N  H  I  F  D  S  I  G  K  S  E  Q  K  T  R  Q  R  S  N  N  Y  R  N  P  P  *  E  L  F  K  L  P  P  P  T  A  L  A  L  E  F  H  L  L  L  L  V  L  S  L  L  L  L  I  A  A  S  P  *  P  K  :  W  S  H  Q  R  N  L  L  K  S  *  G  N  S  R  S  S  M  L  A  G  Q  K  H  I  S  A  W  T  K  V  L  L  L  W  S  S  R :   V  W  Q  S  T  R  I  H  W  V  L  H  S  A  P  A   : G  I  M  M  T  K  L  Q  K  R  S  R  A  S  G  I  V  R  V  Y  Q  *  E  R   : G  R  S  V  T  A  C  F  F  *  P  L  I  M  I  L  L  E  K  N  R :   R  L  L  W  R  R  L  R  K  Q  Q  P  T  C  D  A  R  T  S  Y  T  C  Y  E  H  Y  V  F  V  V  H  V  Y  L  S  I  R  *  R  A  T  I  Q  F  *  C  D  M  L  L  K  P  H  P  L  H  C  C  D  S  D  L  V  *  *  D  W  V  G  E  *  Q  C  N  Y  A  N  C  C  V  M  H  L  D  C  M  S  H  N  S  Y  *  G  I  L  G  G  F  S  F  S  *  C  K  S  *  F  C  I  K  L  E  S  I  S  K  S  C  F  V  K  F  N  P  S  R  L  T  C  *  *  *   </first_frame>
            <second_frame>  R  L  L  I  Y  F  N  Y  N  F  S  S  D  I  R  *  K  E  K  E  R  T  D  S  N  I  *  I  S  T  L  Y  E  R  D  F  F  L  S  E  V  V  V  V  N  R  I  T  F  L  T  Q  S  E  S  R  S  R  K  R  D  N  E  A  T  T  T  G  I  R  H  E  N  S  S  S  F  H  L  L  Q  R  W  L  W  N  F  I  F  C  Y  S  S  *  A  F  F  Y  S  S  L  P  H  R  S  Q  N :   G  A  I  R  E  I  C  *  N  H  E  E  I  L  G  A  V  C  S  Q  V  R  N  I  F  L  H  G  Q  R  C  Y  F  C  G  H  Q   : G  F  G  R  A  Q  G  Y  I  G  C  S  T  L  P  L  Q  :  A  L  *  *  Q  S  C  R  S  A  A  G  L  L  E  L  S  V  C  T  N  E  R  E  :  E  G  V  S  L  H  A  F  S  D  P  *  *  *  F  C  W  R  R  T   : D  D  Y  Y  G  G  D  *  G  N  N  S  Q  H  V  M  L  G  H  L  I  H  A  M  N  I  T  F  L  L  Y  M  Y  I  *  V  L  D  E  E  Q  Q  S  S  S  D  V  T  C  C  *  N  P  I  H  Y  I  V  V  I  L  I  S  S  S  E  I  G  W  V  N  N  S  A  I  M  L  T  V  V  *  C  I  *  I  V  *  V  I  T  H  I  R  G  F  W  V  A  S  A  S  A  N  A  N  P  D  F  V  *  N  W  N  Q  F  P  K  A  A  L  *  S  S  I  P  V  V  *  R  V  N  N  E  </second_frame>
            <third_frame>   V  Y  *  F  I  L  I  I  I  F  L  Q  I  L  G  E  K  K  R  R  E  R  I  V  I  Y  K  Y  Q  R  C  T  K  E  I  F  S  F  P  K  L  W  W  L  T  E  S  H  F  *  L  N  R  K  V  G  A  E  N  E  T  T  K  Q  Q  L  P  E  S  A  M  R  T  L  Q  A  S  T  S  Y  S  V  G  F  G  I  S  S  F  A  T  R  P  K  P  S  S  T  H  R  C  L  T  V  A  K   : M  E  P  S  E  K  S  V  E  I  M  R  K  F  S  E  Q  Y  A  R  R  S  E  T  Y  F  C  M  D  K  G  V  T  S  V  V  I  K  :  G  L  A  E  H  K  D  T  L  G  A  P  L  C  P  C  R :   H  Y  D  D  K  A  A  E  A  Q  Q  G  F  W  N  C  P  C  V  P  M  R  E  R :   K  E  C  H  C  M  L  F  L  T  P  D  N  D  F  A  G  E  E  Q  :  T  I  T  M  E  E  I  K  E  T  T  A  N  M  *  C  S  D  I  L  Y  M  L  *  T  L  R  F  C  C  T  C  I  F  E  Y  *  M  K  S  N  N  P  V  L  M  *  H  V  A  E  T  P  S  I  T  L  L  *  F  *  S  R  L  V  R  L  G  G  *  I  T  V  Q  L  C  *  L  L  C  D  A  S  R  L  Y  E  S  *  L  I  L  G  D  F  G  W  L  Q  L  Q  L  M  Q  I  L  I  L  Y  K  T  G  I  N  F  Q  K  L  L  C  E  V  Q  S  Q  S  S  D  V  L  I  M  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55224" stop="55056"/>
                    <exon start="54485" stop="54373"/>
                    <exon start="51513" stop="51464"/>
                    <exon start="51333" stop="51262"/>
                    <exon start="50612" stop="50552"/>
                    <exon start="50341" stop="50297"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>507</number_coding_nucleotides>
                  <number_encoded_amino_acids>169</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNRKVGAENETTKQQLPESAMRTLQASTSYSVGFGISSFATRPKPSSTHRCLTVAKMEPSEKSVEIMRKFSEQYARRSETYFCMDKGVTSVVIKGLAEHKDTLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERKECHCMLFLTPDNDFAGEEQTITMEEIKETTANM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="53907" e_stop="53175"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="53907" e_stop="53175" e_length="733"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53907" stop="53175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53907" stop="53181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332165" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTT</gDNA_template>
            <first_frame> F  *  T  L  G  Y  S  L  L  G  Y  K  V  R  I  Y  R  I  C  L  E  T  V  L  S  F  Y  *  L  Q  D  N  G  I  L  Y  T  *  S  L  G  Q  A  A  S  V  *  C  H  F  S  S  K  K  L  L  L  Y  Y  S  C  L  I  I  V  E  *  Y  F  V  A  Q  K  F  Y  F  G  L  I  T  S  *  K  K  K  *  Y  L  W  F  R  A  *  I  A  N  H  F  F  P  G  I  L  H  F  I  F  Q  V  *  V  C  V  R  V  S  S  R  S  I  F  L  C  K  F  V  K  V  *  I  *  N  C  G  A  V  E  T  L  E  L  R  G  Y  Q  L  S  K  T  Y  N  E  R  *  T  I  A  Q  S  *  L  Y  N  K  G  Q  L  Y  K  E  F  L  T  Q  R  R  E  *  E  L  R  N  F  *  *  C  E  Y  K  I  Y  H  L  I  N  K  I  E  E  *  I  L  S  S  H  K  Q  D  R  R  I  D  L  S  Q  V  S  E  N  V  T  V  T  E  L  I  D  C  *  I  Q  A  N  H  K  D  Q  S  N  M  L  S  F  F  </first_frame>
            <second_frame>  F  E  R  *  D  T  P  S  *  A  I  K  *  E  F  I  V  S  A  W  K  L  Y  C  R  F  T  N  S  K  I  M  A  F  C  I  L  E  V  *  D  K  L  Q  V  C  D  V  I  S  V  P  K  S  C  F  Y  T  I  A  A  *  L  L  L  N  S  I  L  L  L  R  S  S  T  L  V  L  L  P  H  K  K  K  S  D  T  F  G  L  E  L  E  *  P  I  T  F  S  Q  V  S  F  T  L  Y  F  R  F  R  C  V  F  V  Y  L  L  E  A  Y  F  Y  V  S  S  *  K  Y  E  F  K  I  V  E  L  W  K  L  L  N  *  G  D  I  N  Y  Q  R  L  I  M  R  D  K  Q  *  H  K  A  N  Y  I  I  K  D  S  Y  T  R  N  F  *  H  K  E  G  N  K  N  *  E  T  F  N  N  V  S  T  R  F  T  I  S  *  T  R  *  K  N  R  F  Y  H  L  I  N  K  I  E  E  *  I  Y  L  K  F  Q  R  M  *  L  *  R  S  *  *  I  A  K  Y  K  P  I  T  K  I  N  P  T  C  C  P  S  F </second_frame>
            <third_frame>   L  N  V  R  I  L  P  P  R  L  *  S  E  N  L  S  Y  L  L  G  N  C  I  V  V  L  L  T  P  R  *  W  H  S  V  Y  L  K  F  R  T  S  C  K  C  V  M  S  F  Q  F  Q  K  V  A  S  I  L  *  L  L  D  Y  C  *  I  V  F  C  C  S  E  V  L  L  W  S  Y  Y  L  I  K  K  K  V  I  P  L  V  *  S  L  N  S  Q  S  L  F  P  R  Y  P  S  L  Y  I  S  G  L  G  V  C  S  C  I  F  *  K  H  I  S  M  *  V  R  E  S  M  N  L  K  L  W  S  C  G  N  S  *  T  E  G  I  S  I  I  K  D  L  *  *  E  I  N  N  S  T  K  L  I  I  *  *  R  T  V  I  Q  G  I  F  N  T  K  K  G  I  R  I  E  K  L  L  I  M  *  V  Q  D  L  P  S  H  K  Q  D  R  R  I  D  F  I  I  S  *  T  R  *  K  N  R  F  I  S  S  F  R  E  C  D  C  D  G  V  N  R  L  L  N  T  S  Q  S  Q  R  S  I  Q  H  A  V  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0189G15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="59022" PGL_stop="62923"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59022" e_stop="59124"/>
            <exon e_start="60212" e_stop="61684"/>
            <exon e_start="62634" e_stop="62923"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.424" e_score="0.981"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="59022" e_stop="59124" e_length="103"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.983">
            <gDNA_intron_boundary i_start="59125" i_stop="60211" i_length="1087"/>
          </intron>
          <exon e_serial="2" e_score="0.981">
            <gDNA_exon_boundary e_start="60212" e_stop="61684" e_length="1473"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.424">
            <gDNA_intron_boundary i_start="61685" i_stop="62633" i_length="949"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="62634" e_stop="62923" e_length="290"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59022" stop="59124"/>
              <exon start="60212" stop="60895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59038" stop="59124"/>
              <exon start="60212" stop="61007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59040" stop="59124"/>
              <exon start="60212" stop="60996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59040" stop="59124"/>
              <exon start="60212" stop="60992"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737554" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59040" stop="59124"/>
              <exon start="60212" stop="60963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59040" stop="59124"/>
              <exon start="60212" stop="60933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59046" stop="59124"/>
              <exon start="60212" stop="61684"/>
              <exon start="62634" stop="62914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59050" stop="59124"/>
              <exon start="60212" stop="60815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59055" stop="59124"/>
              <exon start="60212" stop="60534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59057" stop="59124"/>
              <exon start="60212" stop="60448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335923" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59061" stop="59124"/>
              <exon start="60212" stop="60644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59071" stop="59124"/>
              <exon start="60212" stop="60920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59080" stop="59124"/>
              <exon start="60212" stop="60785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59082" stop="59124"/>
              <exon start="60212" stop="60770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59089" stop="59124"/>
              <exon start="60212" stop="60531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59090" stop="59124"/>
              <exon start="60212" stop="60700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59094" stop="59124"/>
              <exon start="60212" stop="61018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60212" stop="60675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60256" stop="60821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60276" stop="60830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60392" stop="60732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60518" stop="61009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60555" stop="61146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60567" stop="61050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60902" stop="61577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60903" stop="61087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60931" stop="61233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699213" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61151" stop="61605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61209" stop="61684"/>
              <exon start="62634" stop="62803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61300" stop="61684"/>
              <exon start="62634" stop="62909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E592078" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61315" stop="61684"/>
              <exon start="62634" stop="62885"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E592212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61389" stop="61684"/>
              <exon start="62634" stop="62808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61416" stop="61684"/>
              <exon start="62634" stop="62923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61416" stop="61684"/>
              <exon start="62634" stop="62891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61416" stop="61684"/>
              <exon start="62634" stop="62839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318542" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61489" stop="61684"/>
              <exon start="62634" stop="62922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61578" stop="61684"/>
              <exon start="62634" stop="62877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419686" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61614" stop="61684"/>
              <exon start="62634" stop="62913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218352" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTCTTATTTTTATGAGAAAGAGAGCTTCAATCTCACCCTAATCTGCTGGAGAATCAGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATG : GCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGTGGTGAAGAGACAGCTCTTCTGGAGAGCCTTGAGGGCAAACAAGGCAAACCAAGATTGAAGCCTCCATTTCCAGCTAATGCAGGACTATATGGATGTCCAACAACTGTTACAAATGTTGAAACAGTAGCTGTTTCACCAACCATCTTAAGGCGTGGTCCAGAGTGGTTTGCTAGTTTTGGCCGGAAGAATAATGCCGGGACAAAGCTGTTTTGCATCTCAGGCCATGTTAACAAGCCCTGTACAGTTGAAGAGGAAATGAGTATTTCATTGAAGGAGCTGCTAGAGAGGCACTGTGGTGGTGTGCGTGGAGGATGGGACAATTTGCTTGCTGTTATACCAGGAGGTTCATCTGTTCCACTGCTTCCCAAGAACATATGTGAGGATGTACTTATGGATTTTGATGCACTCAAAGCTGTGCAGTCAGGGTTGGGAACTGCTGCTGTAATTGTCATGGACAAGTCAACTGATGTTGTAGATGCAATTGCAAGGCTCTCGTACTTCTACAAGCACGAGAGTTGTGGTCAATGTACACCATGTAGGGAAGGCACAGGATGGCTTTGGATGATCATGGAAAGAATGAAGGTTGGCAATGCAAAGTTGGAAGAGATTGACATGCTCCAAGAGGTGACAAAACAGATTGAAGGGCACACTATTTGTGCCTTGGGTGACGCTGCTGCTTGGCCAGTACAGGGTCTTATTAGGCACTTTAGACCAGAGCTAGAAAGGAGGATCAGGGAGCATGCAGAGAGGGAGCTACAACAGGCAGCTGCTGCTTGATTCTTTTATGAG : TTTGCTGTTTGATACCATGGGAATAAATTTTGAGAAGTACCAGAAGTATGAATGTGGGAGGGGAAAGCAGGACGCAGAGCTTCCCTATATCCAGCCACTTTTTATTATCAAACTTGTGTAGAACTATTGTTACATTGTTGGCCCAATGGGTAATTTATGTTTCAGAGCTGGTACATCTAATGTCTTAATGTTTCCTTACATTATCATTGCCATGGTTTTGGTAGTTGAAAGATGCTTTAATATTTGTCATGTTGCGTTAAATAAGATCTACACTTTGGCAATTCCAATTT</gDNA_template>
            <first_frame> F  F  L  F  L  *  E  R  E  L  Q  S  H  P  N  L  L  E  N  Q  L  N  F  V  D  *  S  H  F  C  F  N  I  H   : G  T  Y  K  G  P  S  F  S  T  T  N  C  I  S  S  A  F  *  *  K  M  G  P  I  W  *  V  I  *  H  S  G  C  I  N  C  *  H  S  P  T  Y  T  P  T  P  T  S  R  E  D  S  L  W  W  P  *  R  *  G  S  Y  F  H  K  S  L  R  I  A  *  P  L  P  Q  R  C  H  E  A  R  R  L  V  Q  N  K  R  S  C  H  Q  G  F  *  L  D  R  E  *  N  E  E  I  W  S  S  R  T  W  W  C  W  F  S  I  W  S  Q  M  V  L  H  A  K  D  N  R  W  P  S  F  I  S  C  R  Q  C  *  *  K  *  T  W  N  L  *  R  Q  G  N  H  A  A  *  P  T  Q  V  V  G  R  L  S  D  C  R  S  G  D  E  S  *  S  C  L  Y  L  Y  Q  G  R  V  C  E  *  K  V  E  P  S  E  G  *  T  R  S  L  *  S  W  I  V  G  E  K  C  L  W  I  W  L  *  F  *  R  I  Y  S  F  W  C  W  C  L  Y  L  W  *  R  D  S  S  S  G  E  P  *  G  Q  T  R  Q  T  K  I  E  A  S  I  S  S  *  C  R  T  I  W  M  S  N  N  C  Y  K  C  *  N  S  S  C  F  T  N  H  L  K  A  W  S  R  V  V  C  *  F  W  P  E  E  *  C  R  D  K  A  V  L  H  L  R  P  C  *  Q  A  L  Y  S  *  R  G  N  E  Y  F  I  E  G  A  A  R  E  A  L  W  W  C  A  W  R  M  G  Q  F  A  C  C  Y  T  R  R  F  I  C  S  T  A  S  Q  E  H  M  *  G  C  T  Y  G  F  *  C  T  Q  S  C  A  V  R  V  G  N  C  C  C  N  C  H  G  Q  V  N  *  C  C  R  C  N  C  K  A  L  V  L  L  Q  A  R  E  L  W  S  M  Y  T  M  *  G  R  H  R  M  A  L  D  D  H  G  K  N  E  G  W  Q  C  K  V  G  R  D  *  H  A  P  R  G  D  K  T  D  *  R  A  H  Y  L  C  L  G  *  R  C  C  L  A  S  T  G  S  Y  *  A  L  *  T  R  A  R  K  E  D  Q  G  A  C  R  E  G  A  T  T  G  S  C  C  L  I  L  L  *   : V  C  C  L  I  P  W  E  *  I  L  R  S  T  R  S  M  N  V  G  G  E  S  R  T  Q  S  F  P  I  S  S  H  F  L  L  S  N  L  C  R  T  I  V  T  L  L  A  Q  W  V  I  Y  V  S  E  L  V  H  L  M  S  *  C  F  L  T  L  S  L  P  W  F  W  *  L  K  D  A  L  I  F  V  M  L  R  *  I  R  S  T  L  W  Q  F  Q  F </first_frame>
            <second_frame>  F  S  Y  F  Y  E  K  E  S  F  N  L  T  L  I  C  W  R  I  S  *  I  S  S  I  N  H  I  S  A  S  I  F  M  :  A  P  I  K  G  L  L  S  L  Q  R  T  A  L  A  Q  R  S  S  E  R  W  G  Q  Y  G  R  L  F  S  T  Q  A  A  S  T  A  S  T  P  Q  P  T  P  P  P  P  P  P  E  R  T  H  F  G  G  L  K  D  E  D  R  I  F  T  N  L  Y  G  L  H  D  P  Y  L  K  G  A  M  K  R  G  D  W  Y  R  T  K  D  L  V  I  K  G  S  D  W  I  V  N  E  M  K  K  S  G  L  R  G  R  G  G  A  G  F  P  S  G  L  K  W  S  F  M  P  K  T  T  D  G  R  P  S  Y  L  V  V  N  A  D  E  S  E  P  G  T  C  K  D  R  E  I  M  R  H  D  P  H  K  L  L  E  G  C  L  I  A  G  V  G  M  R  A  R  A  A  Y  I  Y  I  R  G  E  Y  V  N  E  R  L  S  L  Q  K  A  R  Q  E  A  Y  E  A  G  L  L  G  K  N  A  C  G  S  G  Y  D  F  D  V  Y  I  H  F  G  A  G  A  Y  I  C  G  E  E  T  A  L  L  E  S  L  E  G  K  Q  G  K  P  R  L  K  P  P  F  P  A  N  A  G  L  Y  G  C  P  T  T  V  T  N  V  E  T  V  A  V  S  P  T  I  L  R  R  G  P  E  W  F  A  S  F  G  R  K  N  N  A  G  T  K  L  F  C  I  S  G  H  V  N  K  P  C  T  V  E  E  E  M  S  I  S  L  K  E  L  L  E  R  H  C  G  G  V  R  G  G  W  D  N  L  L  A  V  I  P  G  G  S  S  V  P  L  L  P  K  N  I  C  E  D  V  L  M  D  F  D  A  L  K  A  V  Q  S  G  L  G  T  A  A  V  I  V  M  D  K  S  T  D  V  V  D  A  I  A  R  L  S  Y  F  Y  K  H  E  S  C  G  Q  C  T  P  C  R  E  G  T  G  W  L  W  M  I  M  E  R  M  K  V  G  N  A  K  L  E  E  I  D  M  L  Q  E  V  T  K  Q  I  E  G  H  T  I  C  A  L  G  D  A  A  A  W  P  V  Q  G  L  I  R  H  F  R  P  E  L  E  R  R  I  R  E  H  A  E  R  E  L  Q  Q  A  A  A  A  *  F  F  Y  E  :  F  A  V  *  Y  H  G  N  K  F  *  E  V  P  E  V  *  M  W  E  G  K  A  G  R  R  A  S  L  Y  P  A  T  F  Y  Y  Q  T  C  V  E  L  L  L  H  C  W  P  N  G  *  F  M  F  Q  S  W  Y  I  *  C  L  N  V  S  L  H  Y  H  C  H  G  F  G  S  *  K  M  L  *  Y  L  S  C  C  V  K  *  D  L  H  F  G  N  S  N   </second_frame>
            <third_frame>   F  L  I  F  M  R  K  R  A  S  I  S  P  *  S  A  G  E  S  A  E  F  R  R  L  I  T  F  L  L  Q  Y  S  W :   H  L  *  R  A  F  F  L  Y  N  E  L  H  *  L  S  V  L  V  K  D  G  A  N  M  V  G  Y  L  A  L  R  L  H  Q  L  L  A  L  P  N  L  H  P  H  P  H  L  P  R  G  L  T  L  V  A  L  K  M  R  I  V  F  S  Q  I  S  T  D  C  M  T  L  T  S  K  V  P  *  S  E  E  I  G  T  E  Q  K  I  L  S  S  R  V  L  T  G  S  *  M  K  *  R  N  L  V  F  E  D  V  V  V  L  V  F  H  L  V  S  N  G  P  S  C  Q  R  Q  Q  M  A  V  L  H  I  L  S  S  M  L  M  K  V  N  L  E  P  V  K  T  G  K  S  C  G  M  T  H  T  S  C  W  K  A  V  *  L  Q  E  W  G  *  E  L  E  L  L  I  F  I  S  G  E  S  M  *  M  K  G  *  A  F  R  R  L  D  K  K  P  M  K  L  D  C  W  G  K  M  L  V  D  L  V  M  I  L  T  Y  I  F  I  L  V  L  V  P  I  F  V  V  K  R  Q  L  F  W  R  A  L  R  A  N  K  A  N  Q  D  *  S  L  H  F  Q  L  M  Q  D  Y  M  D  V  Q  Q  L  L  Q  M  L  K  Q  *  L  F  H  Q  P  S  *  G  V  V  Q  S  G  L  L  V  L  A  G  R  I  M  P  G  Q  S  C  F  A  S  Q  A  M  L  T  S  P  V  Q  L  K  R  K  *  V  F  H  *  R  S  C  *  R  G  T  V  V  V  C  V  E  D  G  T  I  C  L  L  L  Y  Q  E  V  H  L  F  H  C  F  P  R  T  Y  V  R  M  Y  L  W  I  L  M  H  S  K  L  C  S  Q  G  W  E  L  L  L  *  L  S  W  T  S  Q  L  M  L  *  M  Q  L  Q  G  S  R  T  S  T  S  T  R  V  V  V  N  V  H  H  V  G  K  A  Q  D  G  F  G  *  S  W  K  E  *  R  L  A  M  Q  S  W  K  R  L  T  C  S  K  R  *  Q  N  R  L  K  G  T  L  F  V  P  W  V  T  L  L  L  G  Q  Y  R  V  L  L  G  T  L  D  Q  S  *  K  G  G  S  G  S  M  Q  R  G  S  Y  N  R  Q  L  L  L  D  S  F  M  S :   L  L  F  D  T  M  G  I  N  F  E  K  Y  Q  K  Y  E  C  G  R  G  K  Q  D  A  E  L  P  Y  I  Q  P  L  F  I  I  K  L  V  *  N  Y  C  Y  I  V  G  P  M  G  N  L  C  F  R  A  G  T  S  N  V  L  M  F  P  Y  I  I  I  A  M  V  L  V  V  E  R  C  F  N  I  C  H  V  A  L  N  K  I  Y  T  L  A  I  P  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59086" stop="59124"/>
                    <exon start="60212" stop="61672"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1497</number_coding_nucleotides>
                  <number_encoded_amino_acids>499</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISSINHISASIFMAPIKGLLSLQRTALAQRSSERWGQYGRLFSTQAASTASTPQPTPPPPPPERTHFGGLKDEDRIFTNLYGLHDPYLKGAMKRGDWYRTKDLVIKGSDWIVNEMKKSGLRGRGGAGFPSGLKWSFMPKTTDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRARAAYIYIRGEYVNERLSLQKARQEAYEAGLLGKNACGSGYDFDVYIHFGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNAGTKLFCISGHVNKPCTVEEEMSISLKELLERHCGGVRGGWDNLLAVIPGGSSVPLLPKNICEDVLMDFDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERMKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIREHAERELQQAAAA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="68593" PGL_stop="63867"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68593" e_stop="68539"/>
            <exon e_start="68454" e_stop="68162"/>
            <exon e_start="66924" e_stop="66865"/>
            <exon e_start="66762" e_stop="66637"/>
            <exon e_start="65902" e_stop="65633"/>
            <exon e_start="65535" e_stop="65304"/>
            <exon e_start="64887" e_stop="64757"/>
            <exon e_start="64669" e_stop="63867"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.948" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.955" e_score="0.973"/>
          <exon-intron don_prob="0.000" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.071" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.910" e_score="1.000"/>
          <exon-intron don_prob="0.722" acc_prob="0.578" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="68593" e_stop="68539" e_length="55"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.948">
            <gDNA_intron_boundary i_start="68538" i_stop="68455" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="0.973">
            <gDNA_exon_boundary e_start="68454" e_stop="68162" e_length="293"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.955">
            <gDNA_intron_boundary i_start="68161" i_stop="66925" i_length="1237"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="66924" e_stop="66865" e_length="60"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.973">
            <gDNA_intron_boundary i_start="66864" i_stop="66763" i_length="102"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="66762" e_stop="66637" e_length="126"/>
          </exon>
          <intron i_serial="4" don_prob="0.973" acc_prob="0.983">
            <gDNA_intron_boundary i_start="66636" i_stop="65903" i_length="734"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="65902" e_stop="65633" e_length="270"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.071">
            <gDNA_intron_boundary i_start="65632" i_stop="65536" i_length="97"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="65535" e_stop="65304" e_length="232"/>
          </exon>
          <intron i_serial="6" don_prob="0.987" acc_prob="0.910">
            <gDNA_intron_boundary i_start="65303" i_stop="64888" i_length="416"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="64887" e_stop="64757" e_length="131"/>
          </exon>
          <intron i_serial="7" don_prob="0.722" acc_prob="0.578">
            <gDNA_intron_boundary i_start="64756" i_stop="64670" i_length="87"/>
          </intron>
          <exon e_serial="8" e_score="0.995">
            <gDNA_exon_boundary e_start="64669" e_stop="63867" e_length="803"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68593" stop="68539"/>
              <exon start="68454" stop="68162"/>
              <exon start="66924" stop="66865"/>
              <exon start="66762" stop="66637"/>
              <exon start="65902" stop="65736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68427" stop="68162"/>
              <exon start="66924" stop="66865"/>
              <exon start="66762" stop="66637"/>
              <exon start="65902" stop="65650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68393" stop="68162"/>
              <exon start="66924" stop="66865"/>
              <exon start="66762" stop="66637"/>
              <exon start="65902" stop="65633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68325" stop="68162"/>
              <exon start="66924" stop="66865"/>
              <exon start="66762" stop="66637"/>
              <exon start="65902" stop="65633"/>
              <exon start="65535" stop="65478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68248" stop="68162"/>
              <exon start="66924" stop="66865"/>
              <exon start="66762" stop="66637"/>
              <exon start="65902" stop="65641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65879" stop="65633"/>
              <exon start="65535" stop="65358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65730" stop="65633"/>
              <exon start="65535" stop="65304"/>
              <exon start="64887" stop="64757"/>
              <exon start="64669" stop="64462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65722" stop="65633"/>
              <exon start="65535" stop="65304"/>
              <exon start="64887" stop="64757"/>
              <exon start="64669" stop="64388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65721" stop="65633"/>
              <exon start="65535" stop="65304"/>
              <exon start="64887" stop="64757"/>
              <exon start="64669" stop="64485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235567" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65721" stop="65633"/>
              <exon start="65535" stop="65304"/>
              <exon start="64887" stop="64757"/>
              <exon start="64669" stop="64508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65405" stop="65304"/>
              <exon start="64887" stop="64757"/>
              <exon start="64669" stop="64048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65399" stop="65304"/>
              <exon start="64887" stop="64757"/>
              <exon start="64669" stop="64424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65397" stop="65304"/>
              <exon start="64887" stop="64757"/>
              <exon start="64669" stop="64403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64552" stop="63985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64533" stop="64094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64399" stop="63918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64398" stop="63882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64377" stop="63955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64131" stop="63867"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277213" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAGATTCATGTTGAGGAAGATTGGCTTGAGAATGAAGCCTTTCTTACTTCTTG : GTAGGCGGGGAGTCTTTGATGGAACAGTCGAGAACATGCACCTTCATTGGAAGTATAGGGAATTGGTGAAGGTAATAACGGGGAGGAAAAACATTGAAGAGGTCCACCAAATAGCTAGGATGTTAGAGGCAGAGAGTGGGGGAATACTAGTTGCTGTTGAGCGAGTTAATAAGGGTTATGCGATCATTGTATACCGAGGAAAGAACTACGAAAGGCCTGCTTCATTGAGGCCTCAGACTCTTCTAAGTAAAAGAGAAGCAATGAAGCGCTCTATAGAGGCTCAGCGACGTCAG : TCATTGAAATTACATGTCTTAAAGCTTACACAAAATATAGAGGCTTTGCAGTCACGGTTG : GCCAAGAATGAGGAGATAAGTCATATTCAGTCCCCGGATATAGTTGATAGGCAGGTACCCGTGATGGGCATATCAGATGCTGCAGGTGGAACTAATTACCAGTCTATTGTAGCAAGTCCTATTGAG : GATTCTGGAGATGCTGCAGAAGACACTGACCCCAGTTCTCAGAAAGAATTATCAAATGATTTCTCGGACACAGACCACGATTCGCAGCAAGAATTTCCAATTAATCCGTTTTTCCAATATGAGGGCAAGGTTGAGGCTATGGGTGATACAATTCAACCTCAGCATCAATCTATTTCATCAATCAAAGAGTCGAAAAGTATGTTCAATGTGAATGTGGATCAAGAAACATTCGGCAGTGCAGTGAGTGAATCTGTTTCTAAGTCTTCCAGG : GGAGAAGTTAAGATCCACTTTTCTGAGACCAGAAGTTTCAACAAACCTCGGGAAGTTAACAATAAAATGGAGGTGTCTCAACCTCCTCCTGTAAAACCTCAACAAACACTTAGATCCACCCGGAGTAGGTCCGAAGGGATGTCTACCAGAAGAGTACAGCTTTCCAACAGGGAGAGGCTGCTTCTCAGAAAACAAGCCCTCAAGATGAAGAAGCAACCAGTGCTTGCTGTTG : GGAGGAGCAATATTGTTACTGGAGTTGCAAAAAATATCAAAGAACACTTTAAGAAGTATCCTCTTGCGATTGTGAATGTCAAAGGAAGGGCAAAAGGGACTTCAGTTAGGGAGGTGGTTTTTAAGCTGGAG : CAAGCTACAGGTGCTGTTCTTGTTTCTCAAGAGCCAAGCAAAGTCATATTGTATAGAGGTTGGGGACCAGGTGGAGAGCGTGGTGCTTCTAATGGAAATGACACCAGTAATTCGAAAAACAGCAGAGAGCAAAAGGAACTAATGTCAATATCTCCTGAACTTATATCAGCAATCAGACTTGAATGTGGCTTGCAGTCCAACAATGATATGGAAGTTGCTTCATAGGCAACAACCTTGGTAAAAGGGAAGTTACCAGTTGGTTTTTTTAGGTTCAAAGCCTTGAGCTCTCATCTAACAACGCTTTTGTGCACCCGATGATGGTCTCTGAATTGTCTGTGCATGCATCTAACAATTGCTTTCTTGGTGTGGAGTTGGAATCTAAATTGTGCATCACCTCTCCCATACAAATGAAAGGGAATCGGCTTCCACCAAACTTCTCTCCTTGCAGAATTTCAGTAGCTGGAATAAGTTCCACATGATAATTCCTGTCTCATGGTCATTGTGCATCAACTGGAGAGATTCTGTATGTCAGTTAAGTGGCGCTGCTAATTTACATTTTATGTAAATAGAAGTTTCAATTCAAAAATACGCATCTATTACCATGTCATCTTTTTAATTTTCCCTAGAAACAAAAAAGACTGATGCACATTGCACATGTTCCTTTAGATTACATACTGGTTTTAGATTAGTTATGTTCATGACAAAACAAGTATGTAAACATATAAATTCACCAAAAATCTAATATATGACATTGTCTTTATGACATTCTTTTTAATCAACACTAGGGGCCCGTTTGGACATAA</gDNA_template>
            <first_frame> E  R  F  M  L  R  K  I  G  L  R  M  K  P  F  L  L  L   : G  R  R  G  V  F  D  G  T  V  E  N  M  H  L  H  W  K  Y  R  E  L  V  K  V  I  T  G  R  K  N  I  E  E  V  H  Q  I  A  R  M  L  E  A  E  S  G  G  I  L  V  A  V  E  R  V  N  K  G  Y  A  I  I  V  Y  R  G  K  N  Y  E  R  P  A  S  L  R  P  Q  T  L  L  S  K  R  E  A  M  K  R  S  I  E  A  Q  R  R  Q  :  S  L  K  L  H  V  L  K  L  T  Q  N  I  E  A  L  Q  S  R  L  :  A  K  N  E  E  I  S  H  I  Q  S  P  D  I  V  D  R  Q  V  P  V  M  G  I  S  D  A  A  G  G  T  N  Y  Q  S  I  V  A  S  P  I  E  :  D  S  G  D  A  A  E  D  T  D  P  S  S  Q  K  E  L  S  N  D  F  S  D  T  D  H  D  S  Q  Q  E  F  P  I  N  P  F  F  Q  Y  E  G  K  V  E  A  M  G  D  T  I  Q  P  Q  H  Q  S  I  S  S  I  K  E  S  K  S  M  F  N  V  N  V  D  Q  E  T  F  G  S  A  V  S  E  S  V  S  K  S  S  R  :  G  E  V  K  I  H  F  S  E  T  R  S  F  N  K  P  R  E  V  N  N  K  M  E  V  S  Q  P  P  P  V  K  P  Q  Q  T  L  R  S  T  R  S  R  S  E  G  M  S  T  R  R  V  Q  L  S  N  R  E  R  L  L  L  R  K  Q  A  L  K  M  K  K  Q  P  V  L  A  V   : G  R  S  N  I  V  T  G  V  A  K  N  I  K  E  H  F  K  K  Y  P  L  A  I  V  N  V  K  G  R  A  K  G  T  S  V  R  E  V  V  F  K  L  E  :  Q  A  T  G  A  V  L  V  S  Q  E  P  S  K  V  I  L  Y  R  G  W  G  P  G  G  E  R  G  A  S  N  G  N  D  T  S  N  S  K  N  S  R  E  Q  K  E  L  M  S  I  S  P  E  L  I  S  A  I  R  L  E  C  G  L  Q  S  N  N  D  M  E  V  A  S  *  A  T  T  L  V  K  G  K  L  P  V  G  F  F  R  F  K  A  L  S  S  H  L  T  T  L  L  C  T  R  *  W  S  L  N  C  L  C  M  H  L  T  I  A  F  L  V  W  S  W  N  L  N  C  A  S  P  L  P  Y  K  *  K  G  I  G  F  H  Q  T  S  L  L  A  E  F  Q  *  L  E  *  V  P  H  D  N  S  C  L  M  V  I  V  H  Q  L  E  R  F  C  M  S  V  K  W  R  C  *  F  T  F  Y  V  N  R  S  F  N  S  K  I  R  I  Y  Y  H  V  I  F  L  I  F  P  R  N  K  K  D  *  C  T  L  H  M  F  L  *  I  T  Y  W  F  *  I  S  Y  V  H  D  K  T  S  M  *  T  Y  K  F  T  K  N  L  I  Y  D  I  V  F  M  T  F  F  L  I  N  T  R  G  P  F  G  H   </first_frame>
            <second_frame>  K  D  S  C  *  G  R  L  A  *  E  *  S  L  S  Y  F  L  :  V  G  G  E  S  L  M  E  Q  S  R  T  C  T  F  I  G  S  I  G  N  W  *  R  *  *  R  G  G  K  T  L  K  R  S  T  K  *  L  G  C  *  R  Q  R  V  G  E  Y  *  L  L  L  S  E  L  I  R  V  M  R  S  L  Y  T  E  E  R  T  T  K  G  L  L  H  *  G  L  R  L  F  *  V  K  E  K  Q  *  S  A  L  *  R  L  S  D  V  S :   H  *  N  Y  M  S  *  S  L  H  K  I  *  R  L  C  S  H  G  W :   P  R  M  R  R  *  V  I  F  S  P  R  I  *  L  I  G  R  Y  P  *  W  A  Y  Q  M  L  Q  V  E  L  I  T  S  L  L  *  Q  V  L  L  R :   I  L  E  M  L  Q  K  T  L  T  P  V  L  R  K  N  Y  Q  M  I  S  R  T  Q  T  T  I  R  S  K  N  F  Q  L  I  R  F  S  N  M  R  A  R  L  R  L  W  V  I  Q  F  N  L  S  I  N  L  F  H  Q  S  K  S  R  K  V  C  S  M  *  M  W  I  K  K  H  S  A  V  Q  *  V  N  L  F  L  S  L  P  G :   E  K  L  R  S  T  F  L  R  P  E  V  S  T  N  L  G  K  L  T  I  K  W  R  C  L  N  L  L  L  *  N  L  N  K  H  L  D  P  P  G  V  G  P  K  G  C  L  P  E  E  Y  S  F  P  T  G  R  G  C  F  S  E  N  K  P  S  R  *  R  S  N  Q  C  L  L  L  :  G  G  A  I  L  L  L  E  L  Q  K  I  S  K  N  T  L  R  S  I  L  L  R  L  *  M  S  K  E  G  Q  K  G  L  Q  L  G  R  W  F  L  S  W  S :   K  L  Q  V  L  F  L  F  L  K  S  Q  A  K  S  Y  C  I  E  V  G  D  Q  V  E  S  V  V  L  L  M  E  M  T  P  V  I  R  K  T  A  E  S  K  R  N  *  C  Q  Y  L  L  N  L  Y  Q  Q  S  D  L  N  V  A  C  S  P  T  M  I  W  K  L  L  H  R  Q  Q  P  W  *  K  G  S  Y  Q  L  V  F  L  G  S  K  P  *  A  L  I  *  Q  R  F  C  A  P  D  D  G  L  *  I  V  C  A  C  I  *  Q  L  L  S  W  C  G  V  G  I  *  I  V  H  H  L  S  H  T  N  E  R  E  S  A  S  T  K  L  L  S  L  Q  N  F  S  S  W  N  K  F  H  M  I  I  P  V  S  W  S  L  C  I  N  W  R  D  S  V  C  Q  L  S  G  A  A  N  L  H  F  M  *  I  E  V  S  I  Q  K  Y  A  S  I  T  M  S  S  F  *  F  S  L  E  T  K  K  T  D  A  H  C  T  C  S  F  R  L  H  T  G  F  R  L  V  M  F  M  T  K  Q  V  C  K  H  I  N  S  P  K  I  *  Y  M  T  L  S  L  *  H  S  F  *  S  T  L  G  A  R  L  D  I  </second_frame>
            <third_frame>   K  I  H  V  E  E  D  W  L  E  N  E  A  F  L  T  S  W :   *  A  G  S  L  *  W  N  S  R  E  H  A  P  S  L  E  V  *  G  I  G  E  G  N  N  G  E  E  K  H  *  R  G  P  P  N  S  *  D  V  R  G  R  E  W  G  N  T  S  C  C  *  A  S  *  *  G  L  C  D  H  C  I  P  R  K  E  L  R  K  A  C  F  I  E  A  S  D  S  S  K  *  K  R  S  N  E  A  L  Y  R  G  S  A  T  S   : V  I  E  I  T  C  L  K  A  Y  T  K  Y  R  G  F  A  V  T  V   : G  Q  E  *  G  D  K  S  Y  S  V  P  G  Y  S  *  *  A  G  T  R  D  G  H  I  R  C  C  R  W  N  *  L  P  V  Y  C  S  K  S  Y  *   : G  F  W  R  C  C  R  R  H  *  P  Q  F  S  E  R  I  I  K  *  F  L  G  H  R  P  R  F  A  A  R  I  S  N  *  S  V  F  P  I  *  G  Q  G  *  G  Y  G  *  Y  N  S  T  S  A  S  I  Y  F  I  N  Q  R  V  E  K  Y  V  Q  C  E  C  G  S  R  N  I  R  Q  C  S  E  *  I  C  F  *  V  F  Q   : G  R  S  *  D  P  L  F  *  D  Q  K  F  Q  Q  T  S  G  S  *  Q  *  N  G  G  V  S  T  S  S  C  K  T  S  T  N  T  *  I  H  P  E  *  V  R  R  D  V  Y  Q  K  S  T  A  F  Q  Q  G  E  A  A  S  Q  K  T  S  P  Q  D  E  E  A  T  S  A  C  C  W :   E  E  Q  Y  C  Y  W  S  C  K  K  Y  Q  R  T  L  *  E  V  S  S  C  D  C  E  C  Q  R  K  G  K  R  D  F  S  *  G  G  G  F  *  A  G   : A  S  Y  R  C  C  S  C  F  S  R  A  K  Q  S  H  I  V  *  R  L  G  T  R  W  R  A  W  C  F  *  W  K  *  H  Q  *  F  E  K  Q  Q  R  A  K  G  T  N  V  N  I  S  *  T  Y  I  S  N  Q  T  *  M  W  L  A  V  Q  Q  *  Y  G  S  C  F  I  G  N  N  L  G  K  R  E  V  T  S  W  F  F  *  V  Q  S  L  E  L  S  S  N  N  A  F  V  H  P  M  M  V  S  E  L  S  V  H  A  S  N  N  C  F  L  G  V  E  L  E  S  K  L  C  I  T  S  P  I  Q  M  K  G  N  R  L  P  P  N  F  S  P  C  R  I  S  V  A  G  I  S  S  T  *  *  F  L  S  H  G  H  C  A  S  T  G  E  I  L  Y  V  S  *  V  A  L  L  I  Y  I  L  C  K  *  K  F  Q  F  K  N  T  H  L  L  P  C  H  L  F  N  F  P  *  K  Q  K  R  L  M  H  I  A  H  V  P  L  D  Y  I  L  V  L  D  *  L  C  S  *  Q  N  K  Y  V  N  I  *  I  H  Q  K  S  N  I  *  H  C  L  Y  D  I  L  F  N  Q  H  *  G  P  V  W  T  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68593" stop="68539"/>
                    <exon start="68454" stop="68162"/>
                    <exon start="66924" stop="66865"/>
                    <exon start="66762" stop="66637"/>
                    <exon start="65902" stop="65633"/>
                    <exon start="65535" stop="65304"/>
                    <exon start="64887" stop="64757"/>
                    <exon start="64669" stop="64445"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1389</number_coding_nucleotides>
                  <number_encoded_amino_acids>463</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ERFMLRKIGLRMKPFLLLGRRGVFDGTVENMHLHWKYRELVKVITGRKNIEEVHQIARMLEAESGGILVAVERVNKGYAIIVYRGKNYERPASLRPQTLLSKREAMKRSIEAQRRQSLKLHVLKLTQNIEALQSRLAKNEEISHIQSPDIVDRQVPVMGISDAAGGTNYQSIVASPIEDSGDAAEDTDPSSQKELSNDFSDTDHDSQQEFPINPFFQYEGKVEAMGDTIQPQHQSISSIKESKSMFNVNVDQETFGSAVSESVSKSSRGEVKIHFSETRSFNKPREVNNKMEVSQPPPVKPQQTLRSTRSRSEGMSTRRVQLSNRERLLLRKQALKMKKQPVLAVGRSNIVTGVAKNIKEHFKKYPLAIVNVKGRAKGTSVREVVFKLEQATGAVLVSQEPSKVILYRGWGPGGERGASNGNDTSNSKNSREQKELMSISPELISAIRLECGLQSNNDMEVAS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64400" stop="64191"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VQSLELSSNNAFVHPMMVSELSVHASNNCFLGVELESKLCITSPIQMKGNRLPPNFSPCRISVAGISST*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="71143" PGL_stop="69273"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71143" e_stop="70399"/>
            <exon e_start="69926" e_stop="69419"/>
            <exon e_start="69344" e_stop="69273"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.218" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="0.967"/>
          <exon-only e_score="0.958"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="71143" e_stop="70399" e_length="745"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.218">
            <gDNA_intron_boundary i_start="70398" i_stop="69927" i_length="472"/>
          </intron>
          <exon e_serial="2" e_score="0.967">
            <gDNA_exon_boundary e_start="69926" e_stop="69419" e_length="508"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="69418" i_stop="69345" i_length="74"/>
          </intron>
          <exon e_serial="3" e_score="0.958">
            <gDNA_exon_boundary e_start="69344" e_stop="69273" e_length="72"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71143" stop="70725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71128" stop="70399"/>
              <exon start="69926" stop="69870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71092" stop="70399"/>
              <exon start="69926" stop="69753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69908" stop="69419"/>
              <exon start="69344" stop="69273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471016" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAATGTAAGGATAGCATCATCTTCCTCAACACCAATGTTGCTTCCTTTCTGCAACTTCCATCCCATAAACCCTTCTAAAACCCTCTTAAAACCCTCACCATCACATTCCCTCTTCTCTAGTACACCCTCTCTTTCTCCAAAACCCTTCTTTCCTCGTGATTCCCTTCCTGTTTTCGCCGCATCCCCTGATACTGAAGCTTTACCGGAATCCGCCATCCGAAGAATCGCCGACAAGCTACGCAGTCTTGGATTTGTTGAACAACCCAAGAATCAAGAAACCCAAGAAAATGCTTTGAGTTCTAATCCCACTGCAAACTCACCCGGTCAAATTTTCGTTCCTTTGCCTACCCAATTACCCAAGTACCGCGTGGGTCACACGCTTGACACCAGTTGGAGTACGCCTGAAAACCCAGTACCGCAGCCTGGTTTAGGGAAATCTATACAGAAGTTTCATGAATTGAGGGATGAGTTCTTGAAGGAGAAGGACAAGGAGAGGTTGAAGAATAAGGAGTATAAGAAAGAGAGAGCGCCTAGTTTGGCGGAGCTTACTTTGCCAGCTGAGGAATTGAGGAGGCTGAGGACAGTTGGGATTGCGCTCAGGAAAAAGTTAAAGATTGGAAAGGCTGGGATTACTGAGGGGATTGTGAATGGTATTCATGAAAGATGGAGGCGTATCGAGCTTGTTAAAATTACGTGCGAGGACATATGTAGGTTGAATATGAAGAGGACTCATGAGTTGTTAGAG : AAGAAAACTGGAGGTCTTGTTATATGGAGATCTGGAAGTAATATAATTTTGTATAGAGGAGCTGATTACAAGTATCCTTATTTCTCTGAGAATAGCTTCGAGAATAACAGTGCACAAGATGCTAACCCTGACTTGTTCATGGGTGCGGAAGAGCACATGACTAACTCATCTGGCATAGATGCGGTAAAATCTGATGCATCGGACAGAAAATCTCCTCCACGTGTAATCCAGGGTGTAGGTTCTCCAGACAGAGTCCGATTTGAATTGCCTGGAGAGGCAGAACATACTGAAGAAGCAGACAAGTTGCTGGAAGGACTTGGTCCTCGCTTTACCGATTGGTGGGGTTGTGAGCCACTGCCTATTGATGCAGATCTTTTGCCAGCTATAGTCCCCGGGTACAAGAGACCTTTCCGTCTACTTCCTTATGGAGTAAAACCTAAATTGACAAATGACGAAATGACAACACTGAGGAGACTTGGTCGACCTTTGCCTTGCCATTTTGTATTAG : GAAGAAACAGAAAACTTCAAGGATTGGCTGCTGCAATTGTGAAGCTATGGGAGAAATGTGAAATTGCAAAAG</gDNA_template>
            <first_frame> Q  C  K  D  S  I  I  F  L  N  T  N  V  A  S  F  L  Q  L  P  S  H  K  P  F  *  N  P  L  K  T  L  T  I  T  F  P  L  L  *  Y  T  L  S  F  S  K  T  L  L  S  S  *  F  P  S  C  F  R  R  I  P  *  Y  *  S  F  T  G  I  R  H  P  K  N  R  R  Q  A  T  Q  S  W  I  C  *  T  T  Q  E  S  R  N  P  R  K  C  F  E  F  *  S  H  C  K  L  T  R  S  N  F  R  S  F  A  Y  P  I  T  Q  V  P  R  G  S  H  A  *  H  Q  L  E  Y  A  *  K  P  S  T  A  A  W  F  R  E  I  Y  T  E  V  S  *  I  E  G  *  V  L  E  G  E  G  Q  G  E  V  E  E  *  G  V  *  E  R  E  S  A  *  F  G  G  A  Y  F  A  S  *  G  I  E  E  A  E  D  S  W  D  C  A  Q  E  K  V  K  D  W  K  G  W  D  Y  *  G  D  C  E  W  Y  S  *  K  M  E  A  Y  R  A  C  *  N  Y  V  R  G  H  M  *  V  E  Y  E  E  D  S  *  V  V  R   : E  E  N  W  R  S  C  Y  M  E  I  W  K  *  Y  N  F  V  *  R  S  *  L  Q  V  S  L  F  L  *  E  *  L  R  E  *  Q  C  T  R  C  *  P  *  L  V  H  G  C  G  R  A  H  D  *  L  I  W  H  R  C  G  K  I  *  C  I  G  Q  K  I  S  S  T  C  N  P  G  C  R  F  S  R  Q  S  P  I  *  I  A  W  R  G  R  T  Y  *  R  S  R  Q  V  A  G  R  T  W  S  S  L  Y  R  L  V  G  L  *  A  T  A  Y  *  C  R  S  F  A  S  Y  S  P  R  V  Q  E  T  F  P  S  T  S  L  W  S  K  T  *  I  D  K  *  R  N  D  N  T  E  E  T  W  S  T  F  A  L  P  F  C  I  R :   K  K  Q  K  T  S  R  I  G  C  C  N  C  E  A  M  G  E  M  *  N  C  K   </first_frame>
            <second_frame>  N  V  R  I  A  S  S  S  S  T  P  M  L  L  P  F  C  N  F  H  P  I  N  P  S  K  T  L  L  K  P  S  P  S  H  S  L  F  S  S  T  P  S  L  S  P  K  P  F  F  P  R  D  S  L  P  V  F  A  A  S  P  D  T  E  A  L  P  E  S  A  I  R  R  I  A  D  K  L  R  S  L  G  F  V  E  Q  P  K  N  Q  E  T  Q  E  N  A  L  S  S  N  P  T  A  N  S  P  G  Q  I  F  V  P  L  P  T  Q  L  P  K  Y  R  V  G  H  T  L  D  T  S  W  S  T  P  E  N  P  V  P  Q  P  G  L  G  K  S  I  Q  K  F  H  E  L  R  D  E  F  L  K  E  K  D  K  E  R  L  K  N  K  E  Y  K  K  E  R  A  P  S  L  A  E  L  T  L  P  A  E  E  L  R  R  L  R  T  V  G  I  A  L  R  K  K  L  K  I  G  K  A  G  I  T  E  G  I  V  N  G  I  H  E  R  W  R  R  I  E  L  V  K  I  T  C  E  D  I  C  R  L  N  M  K  R  T  H  E  L  L  E  :  K  K  T  G  G  L  V  I  W  R  S  G  S  N  I  I  L  Y  R  G  A  D  Y  K  Y  P  Y  F  S  E  N  S  F  E  N  N  S  A  Q  D  A  N  P  D  L  F  M  G  A  E  E  H  M  T  N  S  S  G  I  D  A  V  K  S  D  A  S  D  R  K  S  P  P  R  V  I  Q  G  V  G  S  P  D  R  V  R  F  E  L  P  G  E  A  E  H  T  E  E  A  D  K  L  L  E  G  L  G  P  R  F  T  D  W  W  G  C  E  P  L  P  I  D  A  D  L  L  P  A  I  V  P  G  Y  K  R  P  F  R  L  L  P  Y  G  V  K  P  K  L  T  N  D  E  M  T  T  L  R  R  L  G  R  P  L  P  C  H  F  V  L   : G  R  N  R  K  L  Q  G  L  A  A  A  I  V  K  L  W  E  K  C  E  I  A  K  </second_frame>
            <third_frame>   M  *  G  *  H  H  L  P  Q  H  Q  C  C  F  L  S  A  T  S  I  P  *  T  L  L  K  P  S  *  N  P  H  H  H  I  P  S  S  L  V  H  P  L  F  L  Q  N  P  S  F  L  V  I  P  F  L  F  S  P  H  P  L  I  L  K  L  Y  R  N  P  P  S  E  E  S  P  T  S  Y  A  V  L  D  L  L  N  N  P  R  I  K  K  P  K  K  M  L  *  V  L  I  P  L  Q  T  H  P  V  K  F  S  F  L  C  L  P  N  Y  P  S  T  A  W  V  T  R  L  T  P  V  G  V  R  L  K  T  Q  Y  R  S  L  V  *  G  N  L  Y  R  S  F  M  N  *  G  M  S  S  *  R  R  R  T  R  R  G  *  R  I  R  S  I  R  K  R  E  R  L  V  W  R  S  L  L  C  Q  L  R  N  *  G  G  *  G  Q  L  G  L  R  S  G  K  S  *  R  L  E  R  L  G  L  L  R  G  L  *  M  V  F  M  K  D  G  G  V  S  S  L  L  K  L  R  A  R  T  Y  V  G  *  I  *  R  G  L  M  S  C  *  R :   R  K  L  E  V  L  L  Y  G  D  L  E  V  I  *  F  C  I  E  E  L  I  T  S  I  L  I  S  L  R  I  A  S  R  I  T  V  H  K  M  L  T  L  T  C  S  W  V  R  K  S  T  *  L  T  H  L  A  *  M  R  *  N  L  M  H  R  T  E  N  L  L  H  V  *  S  R  V  *  V  L  Q  T  E  S  D  L  N  C  L  E  R  Q  N  I  L  K  K  Q  T  S  C  W  K  D  L  V  L  A  L  P  I  G  G  V  V  S  H  C  L  L  M  Q  I  F  C  Q  L  *  S  P  G  T  R  D  L  S  V  Y  F  L  M  E  *  N  L  N  *  Q  M  T  K  *  Q  H  *  G  D  L  V  D  L  C  L  A  I  L  Y  *  :  E  E  T  E  N  F  K  D  W  L  L  Q  L  *  S  Y  G  R  N  V  K  L  Q  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71142" stop="70399"/>
                    <exon start="69926" stop="69419"/>
                    <exon start="69344" stop="69274"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1323</number_coding_nucleotides>
                  <number_encoded_amino_acids>441</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NVRIASSSSTPMLLPFCNFHPINPSKTLLKPSPSHSLFSSTPSLSPKPFFPRDSLPVFAASPDTEALPESAIRRIADKLRSLGFVEQPKNQETQENALSSNPTANSPGQIFVPLPTQLPKYRVGHTLDTSWSTPENPVPQPGLGKSIQKFHELRDEFLKEKDKERLKNKEYKKERAPSLAELTLPAEELRRLRTVGIALRKKLKIGKAGITEGIVNGIHERWRRIELVKITCEDICRLNMKRTHELLEKKTGGLVIWRSGSNIILYRGADYKYPYFSENSFENNSAQDANPDLFMGAEEHMTNSSGIDAVKSDASDRKSPPRVIQGVGSPDRVRFELPGEAEHTEEADKLLEGLGPRFTDWWGCEPLPIDADLLPAIVPGYKRPFRLLPYGVKPKLTNDEMTTLRRLGRPLPCHFVLGRNRKLQGLAAAIVKLWEKCEIAK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="75457" PGL_stop="72189"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75457" e_stop="75228"/>
            <exon e_start="74685" e_stop="74650"/>
            <exon e_start="74030" e_stop="73829"/>
            <exon e_start="72816" e_stop="72738"/>
            <exon e_start="72647" e_stop="72412"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.953" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.934" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.952" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="75457" e_stop="75228" e_length="230"/>
          </exon>
          <intron i_serial="1" don_prob="0.953" acc_prob="0.995">
            <gDNA_intron_boundary i_start="75227" i_stop="74686" i_length="542"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74685" e_stop="74650" e_length="36"/>
          </exon>
          <intron i_serial="2" don_prob="0.934" acc_prob="0.999">
            <gDNA_intron_boundary i_start="74649" i_stop="74031" i_length="619"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="74030" e_stop="73829" e_length="202"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="73828" i_stop="72817" i_length="1012"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="72816" e_stop="72738" e_length="79"/>
          </exon>
          <intron i_serial="4" don_prob="0.987" acc_prob="0.952">
            <gDNA_intron_boundary i_start="72737" i_stop="72648" i_length="90"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="72647" e_stop="72412" e_length="236"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75457" stop="75228"/>
              <exon start="74685" stop="74650"/>
              <exon start="74030" stop="73829"/>
              <exon start="72816" stop="72738"/>
              <exon start="72647" stop="72573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75456" stop="75228"/>
              <exon start="74685" stop="74650"/>
              <exon start="74030" stop="73829"/>
              <exon start="72816" stop="72749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201929" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75444" stop="75228"/>
              <exon start="74685" stop="74650"/>
              <exon start="74030" stop="73829"/>
              <exon start="72816" stop="72738"/>
              <exon start="72647" stop="72412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75429" stop="75228"/>
              <exon start="74685" stop="74650"/>
              <exon start="74030" stop="73829"/>
              <exon start="72816" stop="72738"/>
              <exon start="72647" stop="72432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75341" stop="75228"/>
              <exon start="74685" stop="74650"/>
              <exon start="74030" stop="73829"/>
              <exon start="72816" stop="72738"/>
              <exon start="72647" stop="72463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609214" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATAAATACCAGACAGTACTCTGCAAACACTCCTACATTTGTACAGTAAACATCATGAATATCATCAACAGGGCAGCTTCGATTTTTCTTCTTTTGGTGTTCTTCTTGGCTTTTTTCAAAGATTCTGTTCATGGGCGCCCTCTTTTACTGTCAATGTCCAGACCCAAGCCGGATGATGCTGCCTTATTTGCTCGATGGCTCGTTTCTCAGAATTATTGGGGTGTCCTCAA : TACTATAGCAAGTGATATGGGAGGAGCACCGTTCGG : GAATGTTGTCTCATTTAGTGATGGGTTACCGGACAAAGGCCGTGGTATACCATACTTCTACTTAACAACGCTTGATCCCACTGCTAGAAATGCATTGAAAGACCAGAGATCATCATTTACAATCAGTGAGTACGCCATTGGAACTTGCGGCAAGAAAGATCCTGAGAACCCATCTTGTGCCAAAATTACCCTCGTAGGAAAG : TTGAAAGTGGTTGCTGGAGATCCAAAGGAAACTAGCTTTGCTCAAACTGCTTTATTTACAAAACACCCTGAGATGGAAG : GTTGGCCCAAGAGTCACGATTTCCAGATATACAAATTAGAGATTGAAGAGATATTTATGATCAATTGGTTTGGTGGTCCCAAACCTCTCACCGTGGATCAGTATTTGCAGGCTAAAATGTAAGTTTAGACTTAAGAGCTGTAAGGAAGTTGCTAAAGAAAAAATCTGATATTGTAGATGCTCAATGAATTGAAAAAATAAATAAAATGTTACTACCATTAGTTTCAGCGTTGATGT</gDNA_template>
            <first_frame> N  K  Y  Q  T  V  L  C  K  H  S  Y  I  C  T  V  N  I  M  N  I  I  N  R  A  A  S  I  F  L  L  L  V  F  F  L  A  F  F  K  D  S  V  H  G  R  P  L  L  L  S  M  S  R  P  K  P  D  D  A  A  L  F  A  R  W  L  V  S  Q  N  Y  W  G  V  L  N :   T  I  A  S  D  M  G  G  A  P  F  G :   N  V  V  S  F  S  D  G  L  P  D  K  G  R  G  I  P  Y  F  Y  L  T  T  L  D  P  T  A  R  N  A  L  K  D  Q  R  S  S  F  T  I  S  E  Y  A  I  G  T  C  G  K  K  D  P  E  N  P  S  C  A  K  I  T  L  V  G  K  :  L  K  V  V  A  G  D  P  K  E  T  S  F  A  Q  T  A  L  F  T  K  H  P  E  M  E   : G  W  P  K  S  H  D  F  Q  I  Y  K  L  E  I  E  E  I  F  M  I  N  W  F  G  G  P  K  P  L  T  V  D  Q  Y  L  Q  A  K  M  *  V  *  T  *  E  L  *  G  S  C  *  R  K  N  L  I  L  *  M  L  N  E  L  K  K  *  I  K  C  Y  Y  H  *  F  Q  R  *  C </first_frame>
            <second_frame>  I  N  T  R  Q  Y  S  A  N  T  P  T  F  V  Q  *  T  S  *  I  S  S  T  G  Q  L  R  F  F  F  F  W  C  S  S  W  L  F  S  K  I  L  F  M  G  A  L  F  Y  C  Q  C  P  D  P  S  R  M  M  L  P  Y  L  L  D  G  S  F  L  R  I  I  G  V  S  S   : I  L  *  Q  V  I  W  E  E  H  R  S   : G  M  L  S  H  L  V  M  G  Y  R  T  K  A  V  V  Y  H  T  S  T  *  Q  R  L  I  P  L  L  E  M  H  *  K  T  R  D  H  H  L  Q  S  V  S  T  P  L  E  L  A  A  R  K  I  L  R  T  H  L  V  P  K  L  P  S  *  E  S :   *  K  W  L  L  E  I  Q  R  K  L  A  L  L  K  L  L  Y  L  Q  N  T  L  R  W  K  :  V  G  P  R  V  T  I  S  R  Y  T  N  *  R  L  K  R  Y  L  *  S  I  G  L  V  V  P  N  L  S  P  W  I  S  I  C  R  L  K  C  K  F  R  L  K  S  C  K  E  V  A  K  E  K  I  *  Y  C  R  C  S  M  N  *  K  N  K  *  N  V  T  T  I  S  F  S  V  D   </second_frame>
            <third_frame>   *  I  P  D  S  T  L  Q  T  L  L  H  L  Y  S  K  H  H  E  Y  H  Q  Q  G  S  F  D  F  S  S  F  G  V  L  L  G  F  F  Q  R  F  C  S  W  A  P  S  F  T  V  N  V  Q  T  Q  A  G  *  C  C  L  I  C  S  M  A  R  F  S  E  L  L  G  C  P  Q  :  Y  Y  S  K  *  Y  G  R  S  T  V  R  :  E  C  C  L  I  *  *  W  V  T  G  Q  R  P  W  Y  T  I  L  L  L  N  N  A  *  S  H  C  *  K  C  I  E  R  P  E  I  I  I  Y  N  Q  *  V  R  H  W  N  L  R  Q  E  R  S  *  E  P  I  L  C  Q  N  Y  P  R  R  K   : V  E  S  G  C  W  R  S  K  G  N  *  L  C  S  N  C  F  I  Y  K  T  P  *  D  G  R :   L  A  Q  E  S  R  F  P  D  I  Q  I  R  D  *  R  D  I  Y  D  Q  L  V  W  W  S  Q  T  S  H  R  G  S  V  F  A  G  *  N  V  S  L  D  L  R  A  V  R  K  L  L  K  K  K  S  D  I  V  D  A  Q  *  I  E  K  I  N  K  M  L  L  P  L  V  S  A  L  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75457" stop="75228"/>
                    <exon start="74685" stop="74650"/>
                    <exon start="74030" stop="73829"/>
                    <exon start="72816" stop="72738"/>
                    <exon start="72647" stop="72526"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>666</number_coding_nucleotides>
                  <number_encoded_amino_acids>222</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NKYQTVLCKHSYICTVNIMNIINRAASIFLLLVFFLAFFKDSVHGRPLLLSMSRPKPDDAALFARWLVSQNYWGVLNTIASDMGGAPFGNVVSFSDGLPDKGRGIPYFYLTTLDPTARNALKDQRSSFTISEYAIGTCGKKDPENPSCAKITLVGKLKVVAGDPKETSFAQTALFTKHPEMEGWPKSHDFQIYKLEIEEIFMINWFGGPKPLTVDQYLQAKM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="75457" e_stop="75228"/>
            <exon e_start="74685" e_stop="74650"/>
            <exon e_start="74030" e_stop="73829"/>
            <exon e_start="72816" e_stop="72738"/>
            <exon e_start="72647" e_stop="72530"/>
            <exon e_start="72379" e_stop="72189"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.953" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.934" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.865" e_score="0.983"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="75457" e_stop="75228" e_length="230"/>
          </exon>
          <intron i_serial="1" don_prob="0.953" acc_prob="0.995">
            <gDNA_intron_boundary i_start="75227" i_stop="74686" i_length="542"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74685" e_stop="74650" e_length="36"/>
          </exon>
          <intron i_serial="2" don_prob="0.934" acc_prob="0.999">
            <gDNA_intron_boundary i_start="74649" i_stop="74031" i_length="619"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="74030" e_stop="73829" e_length="202"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="73828" i_stop="72817" i_length="1012"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="72816" e_stop="72738" e_length="79"/>
          </exon>
          <intron i_serial="4" don_prob="0.987" acc_prob="0.952">
            <gDNA_intron_boundary i_start="72737" i_stop="72648" i_length="90"/>
          </intron>
          <exon e_serial="5" e_score="0.983">
            <gDNA_exon_boundary e_start="72647" e_stop="72530" e_length="118"/>
          </exon>
          <intron i_serial="5" don_prob="0.944" acc_prob="0.865">
            <gDNA_intron_boundary i_start="72529" i_stop="72380" i_length="150"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="72379" e_stop="72189" e_length="191"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75457" stop="75228"/>
              <exon start="74685" stop="74650"/>
              <exon start="74030" stop="73829"/>
              <exon start="72816" stop="72738"/>
              <exon start="72647" stop="72573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75456" stop="75228"/>
              <exon start="74685" stop="74650"/>
              <exon start="74030" stop="73829"/>
              <exon start="72816" stop="72749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201929" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73892" stop="73829"/>
              <exon start="72816" stop="72738"/>
              <exon start="72647" stop="72530"/>
              <exon start="72379" stop="72189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281123" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATAAATACCAGACAGTACTCTGCAAACACTCCTACATTTGTACAGTAAACATCATGAATATCATCAACAGGGCAGCTTCGATTTTTCTTCTTTTGGTGTTCTTCTTGGCTTTTTTCAAAGATTCTGTTCATGGGCGCCCTCTTTTACTGTCAATGTCCAGACCCAAGCCGGATGATGCTGCCTTATTTGCTCGATGGCTCGTTTCTCAGAATTATTGGGGTGTCCTCAA : TACTATAGCAAGTGATATGGGAGGAGCACCGTTCGG : GAATGTTGTCTCATTTAGTGATGGGTTACCGGACAAAGGCCGTGGTATACCATACTTCTACTTAACAACGCTTGATCCCACTGCTAGAAATGCATTGAAAGACCAGAGATCATCATTTACAATCAGTGAGTACGCCATTGGAACTTGCGGCAAGAAAGATCCTGAGAACCCATCTTGTGCCAAAATTACCCTCGTAGGAAAG : TTGAAAGTGGTTGCTGGAGATCCAAAGGAAACTAGCTTTGCTCAAACTGCTTTATTTACAAAACACCCTGAGATGGAAG : GTTGGCCCAAGAGTCACGATTTCCAGATATACAAATTAGAGATTGAAGAGATATTTATGATCAATTGGTTTGGTGGTCCCAAACCTCTCACCGTGGATCAGTATTTGCAGGCTAAAAT : GGATAGTCACATGACCATTGCATGAACGCCTTTATGTATACAATCTGCTGACAAGTTCTTTTCAAGTGAAGGTTGAAAGTGGTTTTGGAATGTGAAAAAAGGGTATCAATTTTAGTGATCAATGAAATTCAACTGTAAATAGGAGATACTTGTGAAGCTCATTATCATTCATTCACTTGTGCATTTGACAT</gDNA_template>
            <first_frame> N  K  Y  Q  T  V  L  C  K  H  S  Y  I  C  T  V  N  I  M  N  I  I  N  R  A  A  S  I  F  L  L  L  V  F  F  L  A  F  F  K  D  S  V  H  G  R  P  L  L  L  S  M  S  R  P  K  P  D  D  A  A  L  F  A  R  W  L  V  S  Q  N  Y  W  G  V  L  N :   T  I  A  S  D  M  G  G  A  P  F  G :   N  V  V  S  F  S  D  G  L  P  D  K  G  R  G  I  P  Y  F  Y  L  T  T  L  D  P  T  A  R  N  A  L  K  D  Q  R  S  S  F  T  I  S  E  Y  A  I  G  T  C  G  K  K  D  P  E  N  P  S  C  A  K  I  T  L  V  G  K  :  L  K  V  V  A  G  D  P  K  E  T  S  F  A  Q  T  A  L  F  T  K  H  P  E  M  E   : G  W  P  K  S  H  D  F  Q  I  Y  K  L  E  I  E  E  I  F  M  I  N  W  F  G  G  P  K  P  L  T  V  D  Q  Y  L  Q  A  K  M :   D  S  H  M  T  I  A  *  T  P  L  C  I  Q  S  A  D  K  F  F  S  S  E  G  *  K  W  F  W  N  V  K  K  G  Y  Q  F  *  *  S  M  K  F  N  C  K  *  E  I  L  V  K  L  I  I  I  H  S  L  V  H  L  T  </first_frame>
            <second_frame>  I  N  T  R  Q  Y  S  A  N  T  P  T  F  V  Q  *  T  S  *  I  S  S  T  G  Q  L  R  F  F  F  F  W  C  S  S  W  L  F  S  K  I  L  F  M  G  A  L  F  Y  C  Q  C  P  D  P  S  R  M  M  L  P  Y  L  L  D  G  S  F  L  R  I  I  G  V  S  S   : I  L  *  Q  V  I  W  E  E  H  R  S   : G  M  L  S  H  L  V  M  G  Y  R  T  K  A  V  V  Y  H  T  S  T  *  Q  R  L  I  P  L  L  E  M  H  *  K  T  R  D  H  H  L  Q  S  V  S  T  P  L  E  L  A  A  R  K  I  L  R  T  H  L  V  P  K  L  P  S  *  E  S :   *  K  W  L  L  E  I  Q  R  K  L  A  L  L  K  L  L  Y  L  Q  N  T  L  R  W  K  :  V  G  P  R  V  T  I  S  R  Y  T  N  *  R  L  K  R  Y  L  *  S  I  G  L  V  V  P  N  L  S  P  W  I  S  I  C  R  L  K   : W  I  V  T  *  P  L  H  E  R  L  Y  V  Y  N  L  L  T  S  S  F  Q  V  K  V  E  S  G  F  G  M  *  K  K  G  I  N  F  S  D  Q  *  N  S  T  V  N  R  R  Y  L  *  S  S  L  S  F  I  H  L  C  I  *  H </second_frame>
            <third_frame>   *  I  P  D  S  T  L  Q  T  L  L  H  L  Y  S  K  H  H  E  Y  H  Q  Q  G  S  F  D  F  S  S  F  G  V  L  L  G  F  F  Q  R  F  C  S  W  A  P  S  F  T  V  N  V  Q  T  Q  A  G  *  C  C  L  I  C  S  M  A  R  F  S  E  L  L  G  C  P  Q  :  Y  Y  S  K  *  Y  G  R  S  T  V  R  :  E  C  C  L  I  *  *  W  V  T  G  Q  R  P  W  Y  T  I  L  L  L  N  N  A  *  S  H  C  *  K  C  I  E  R  P  E  I  I  I  Y  N  Q  *  V  R  H  W  N  L  R  Q  E  R  S  *  E  P  I  L  C  Q  N  Y  P  R  R  K   : V  E  S  G  C  W  R  S  K  G  N  *  L  C  S  N  C  F  I  Y  K  T  P  *  D  G  R :   L  A  Q  E  S  R  F  P  D  I  Q  I  R  D  *  R  D  I  Y  D  Q  L  V  W  W  S  Q  T  S  H  R  G  S  V  F  A  G  *  N  :  G  *  S  H  D  H  C  M  N  A  F  M  Y  T  I  C  *  Q  V  L  F  K  *  R  L  K  V  V  L  E  C  E  K  R  V  S  I  L  V  I  N  E  I  Q  L  *  I  G  D  T  C  E  A  H  Y  H  S  F  T  C  A  F  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75457" stop="75228"/>
                    <exon start="74685" stop="74650"/>
                    <exon start="74030" stop="73829"/>
                    <exon start="72816" stop="72738"/>
                    <exon start="72647" stop="72530"/>
                    <exon start="72379" stop="72355"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>687</number_coding_nucleotides>
                  <number_encoded_amino_acids>229</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NKYQTVLCKHSYICTVNIMNIINRAASIFLLLVFFLAFFKDSVHGRPLLLSMSRPKPDDAALFARWLVSQNYWGVLNTIASDMGGAPFGNVVSFSDGLPDKGRGIPYFYLTTLDPTARNALKDQRSSFTISEYAIGTCGKKDPENPSCAKITLVGKLKVVAGDPKETSFAQTALFTKHPEMEGWPKSHDFQIYKLEIEEIFMINWFGGPKPLTVDQYLQAKMDSHMTIA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="75416" e_stop="75228"/>
            <exon e_start="74685" e_stop="74650"/>
            <exon e_start="74030" e_stop="73715"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.953" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.934" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="75416" e_stop="75228" e_length="189"/>
          </exon>
          <intron i_serial="1" don_prob="0.953" acc_prob="0.995">
            <gDNA_intron_boundary i_start="75227" i_stop="74686" i_length="542"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74685" e_stop="74650" e_length="36"/>
          </exon>
          <intron i_serial="2" don_prob="0.934" acc_prob="0.999">
            <gDNA_intron_boundary i_start="74649" i_stop="74031" i_length="619"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="74030" e_stop="73715" e_length="316"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75416" stop="75228"/>
              <exon start="74685" stop="74650"/>
              <exon start="74030" stop="73715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314375" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACAGTAAACATCATGAATATCATCAACAGGGCAGCTTCGATTTTTCTTCTTTTGGTGTTCTTCTTGGCTTTTTTCAAAGATTCTGTTCATGGGCGCCCTCTTTTACTGTCAATGTCCAGACCCAAGCCGGATGATGCTGCCTTATTTGCTCGATGGCTCGTTTCTCAGAATTATTGGGGTGTCCTCAA : TACTATAGCAAGTGATATGGGAGGAGCACCGTTCGG : GAATGTTGTCTCATTTAGTGATGGGTTACCGGACAAAGGCCGTGGTATACCATACTTCTACTTAACAACGCTTGATCCCACTGCTAGAAATGCATTGAAAGACCAGAGATCATCATTTACAATCAGTGAGTACGCCATTGGAACTTGCGGCAAGAAAGATCCTGAGAACCCATCTTGTGCCAAAATTACCCTCGTAGGAAAGGTGGTTGCACTAACAACTCTTCTCCTTTATACAAGAGATTTTATTTAATTTGATGCAGGTGTCTTTTAAACAAGAGTTTTTTGTATCATGCCGAATATTCTGTATCCCACTCTT</gDNA_template>
            <first_frame> Y  S  K  H  H  E  Y  H  Q  Q  G  S  F  D  F  S  S  F  G  V  L  L  G  F  F  Q  R  F  C  S  W  A  P  S  F  T  V  N  V  Q  T  Q  A  G  *  C  C  L  I  C  S  M  A  R  F  S  E  L  L  G  C  P  Q  :  Y  Y  S  K  *  Y  G  R  S  T  V  R  :  E  C  C  L  I  *  *  W  V  T  G  Q  R  P  W  Y  T  I  L  L  L  N  N  A  *  S  H  C  *  K  C  I  E  R  P  E  I  I  I  Y  N  Q  *  V  R  H  W  N  L  R  Q  E  R  S  *  E  P  I  L  C  Q  N  Y  P  R  R  K  G  G  C  T  N  N  S  S  P  L  Y  K  R  F  Y  L  I  *  C  R  C  L  L  N  K  S  F  L  Y  H  A  E  Y  S  V  S  H  S  </first_frame>
            <second_frame>  T  V  N  I  M  N  I  I  N  R  A  A  S  I  F  L  L  L  V  F  F  L  A  F  F  K  D  S  V  H  G  R  P  L  L  L  S  M  S  R  P  K  P  D  D  A  A  L  F  A  R  W  L  V  S  Q  N  Y  W  G  V  L  N :   T  I  A  S  D  M  G  G  A  P  F  G :   N  V  V  S  F  S  D  G  L  P  D  K  G  R  G  I  P  Y  F  Y  L  T  T  L  D  P  T  A  R  N  A  L  K  D  Q  R  S  S  F  T  I  S  E  Y  A  I  G  T  C  G  K  K  D  P  E  N  P  S  C  A  K  I  T  L  V  G  K  V  V  A  L  T  T  L  L  L  Y  T  R  D  F  I  *  F  D  A  G  V  F  *  T  R  V  F  C  I  M  P  N  I  L  Y  P  T  L </second_frame>
            <third_frame>   Q  *  T  S  *  I  S  S  T  G  Q  L  R  F  F  F  F  W  C  S  S  W  L  F  S  K  I  L  F  M  G  A  L  F  Y  C  Q  C  P  D  P  S  R  M  M  L  P  Y  L  L  D  G  S  F  L  R  I  I  G  V  S  S   : I  L  *  Q  V  I  W  E  E  H  R  S   : G  M  L  S  H  L  V  M  G  Y  R  T  K  A  V  V  Y  H  T  S  T  *  Q  R  L  I  P  L  L  E  M  H  *  K  T  R  D  H  H  L  Q  S  V  S  T  P  L  E  L  A  A  R  K  I  L  R  T  H  L  V  P  K  L  P  S  *  E  R  W  L  H  *  Q  L  F  S  F  I  Q  E  I  L  F  N  L  M  Q  V  S  F  K  Q  E  F  F  V  S  C  R  I  F  C  I  P  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75415" stop="75228"/>
                    <exon start="74685" stop="74650"/>
                    <exon start="74030" stop="73781"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>471</number_coding_nucleotides>
                  <number_encoded_amino_acids>157</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TVNIMNIINRAASIFLLLVFFLAFFKDSVHGRPLLLSMSRPKPDDAALFARWLVSQNYWGVLNTIASDMGGAPFGNVVSFSDGLPDKGRGIPYFYLTTLDPTARNALKDQRSSFTISEYAIGTCGKKDPENPSCAKITLVGKVVALTTLLLYTRDFI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="92048" PGL_stop="93460"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92048" e_stop="93460"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="92048" e_stop="93460" e_length="1413"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92048" stop="93460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92066" stop="92526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92126" stop="92858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92132" stop="92587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92170" stop="92617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92170" stop="92570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92216" stop="92524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92329" stop="92868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92392" stop="93129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92513" stop="92861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266834" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTAAGAAGGAAGGGAAAAAGAAAGGAGTATATGAGTCTTGGAAAGTCAGGTGAGCAGAAAATTGAGCCTAAATAGGCAGGCACAGCCTGGCCAGATCAACGAAGCTTCTCTATAACATAGAATTTCTTGAGATCTAACGATAATCAAAGTCAACAATGGGGCTATTCAGCTATACTGTCGCCGGCGGCGGATTTATACTAATCGGCGCTTGGGAATCTCTGGTCTCTTCTTCTGGTGCCCTGAAAAATTCATCACCGTCGTCCACTACCCAATCGCCGCCACAAAATCCATCGACAGATAAGCATGAGCAAGATTCTGTTTTTTCTTCATCGGTCACCTTTGTATTAATCTTAATCCTTTCGTTCCTTTTCGTTCTCGATTCCTTGTTATCCTTTTTCGACGCACTCAACTCCAAAGACAACATTGGTTCCGTCCTTCAATTGCAGGTTATCGCGATTTCTCTTCTTTTCTTTCTCTATTCGGTATTAGGTCTCATGACCCGCTTGAAAAGTTCTTTTCATTTACCTTCACCGATCCTCAATTTGCTTTGCCTCTTCGCTTTTGCTGAGGAATTTTTGTTGTTTTATCTTCAAAGGAAAGACCCAAGTGGAGTTGAAAATCGTTACTATAATCTCTTGCTTGTGCCTATTGCTATTTGTGCATTTTGTTCATTTCTAGAATTGAAAAATCCCAAATCAAATTACACTAGATTAGGACGTGGGATTGGGTTAATCTTGCAAGGGACGTGGACTCTTCAAATGGGGTTTGCTTTTTTCTCCGATTTGATTGCACAGGGATGCTATTTACATCAAAGGAGTAGAGGTAATTACACGGTTAAGTGTAAAGGTCATCCTCAGTACCATCGAGGTGGAGCTATTGCTACCCTTCAGTTCAATTGCCACCTTGCTCTTCTTGTGACTGTGATTACTTTTGTATACTCAATTGTGTGTAAAAAACATGGCATTGGCCGTGAACATATGCGGTATAGACCTATTGGAGCTGAGATGCAACACTTGGAAATCGATAGTCAAGCTCATTTTACATTGGAGTCTGATGAAGAGGATGACAATGAGAATGGGATAAAAGAAGAGATGAATGTTGAAATGCAAAAGGCTATTGTACCTGTTCCTGAATCAGAAACTAATGGCTATCATACCCATCCTTGAGGAAACCCATGGTTCATTTTTTATGTTACTGGGTATAAAGATATATTCTTTGCAGAGGGGTTATGGTTTAGAGGTTGGGGTTCCCTTTGTATAAAGAATTTACATATAGAAAAGAGAAAGTTTCAGTCTTTTTGTATTTGATGATTCTAGTTCAAATTGTAATGTTGTCTTAGAAATTTTCTTTGAAGTGATTTAAGTATATTTTCCTTTATTGTGTGTCTATGGAAGACTTACTCTTTGATAGTA</gDNA_template>
            <first_frame> C  K  K  E  G  K  K  K  G  V  Y  E  S  W  K  V  R  *  A  E  N  *  A  *  I  G  R  H  S  L  A  R  S  T  K  L  L  Y  N  I  E  F  L  E  I  *  R  *  S  K  S  T  M  G  L  F  S  Y  T  V  A  G  G  G  F  I  L  I  G  A  W  E  S  L  V  S  S  S  G  A  L  K  N  S  S  P  S  S  T  T  Q  S  P  P  Q  N  P  S  T  D  K  H  E  Q  D  S  V  F  S  S  S  V  T  F  V  L  I  L  I  L  S  F  L  F  V  L  D  S  L  L  S  F  F  D  A  L  N  S  K  D  N  I  G  S  V  L  Q  L  Q  V  I  A  I  S  L  L  F  F  L  Y  S  V  L  G  L  M  T  R  L  K  S  S  F  H  L  P  S  P  I  L  N  L  L  C  L  F  A  F  A  E  E  F  L  L  F  Y  L  Q  R  K  D  P  S  G  V  E  N  R  Y  Y  N  L  L  L  V  P  I  A  I  C  A  F  C  S  F  L  E  L  K  N  P  K  S  N  Y  T  R  L  G  R  G  I  G  L  I  L  Q  G  T  W  T  L  Q  M  G  F  A  F  F  S  D  L  I  A  Q  G  C  Y  L  H  Q  R  S  R  G  N  Y  T  V  K  C  K  G  H  P  Q  Y  H  R  G  G  A  I  A  T  L  Q  F  N  C  H  L  A  L  L  V  T  V  I  T  F  V  Y  S  I  V  C  K  K  H  G  I  G  R  E  H  M  R  Y  R  P  I  G  A  E  M  Q  H  L  E  I  D  S  Q  A  H  F  T  L  E  S  D  E  E  D  D  N  E  N  G  I  K  E  E  M  N  V  E  M  Q  K  A  I  V  P  V  P  E  S  E  T  N  G  Y  H  T  H  P  *  G  N  P  W  F  I  F  Y  V  T  G  Y  K  D  I  F  F  A  E  G  L  W  F  R  G  W  G  S  L  C  I  K  N  L  H  I  E  K  R  K  F  Q  S  F  C  I  *  *  F  *  F  K  L  *  C  C  L  R  N  F  L  *  S  D  L  S  I  F  S  F  I  V  C  L  W  K  T  Y  S  L  I  V </first_frame>
            <second_frame>  V  R  R  K  G  K  R  K  E  Y  M  S  L  G  K  S  G  E  Q  K  I  E  P  K  *  A  G  T  A  W  P  D  Q  R  S  F  S  I  T  *  N  F  L  R  S  N  D  N  Q  S  Q  Q  W  G  Y  S  A  I  L  S  P  A  A  D  L  Y  *  S  A  L  G  N  L  W  S  L  L  L  V  P  *  K  I  H  H  R  R  P  L  P  N  R  R  H  K  I  H  R  Q  I  S  M  S  K  I  L  F  F  L  H  R  S  P  L  Y  *  S  *  S  F  R  S  F  S  F  S  I  P  C  Y  P  F  S  T  H  S  T  P  K  T  T  L  V  P  S  F  N  C  R  L  S  R  F  L  F  F  S  F  S  I  R  Y  *  V  S  *  P  A  *  K  V  L  F  I  Y  L  H  R  S  S  I  C  F  A  S  S  L  L  L  R  N  F  C  C  F  I  F  K  G  K  T  Q  V  E  L  K  I  V  T  I  I  S  C  L  C  L  L  L  F  V  H  F  V  H  F  *  N  *  K  I  P  N  Q  I  T  L  D  *  D  V  G  L  G  *  S  C  K  G  R  G  L  F  K  W  G  L  L  F  S  P  I  *  L  H  R  D  A  I  Y  I  K  G  V  E  V  I  T  R  L  S  V  K  V  I  L  S  T  I  E  V  E  L  L  L  P  F  S  S  I  A  T  L  L  F  L  *  L  *  L  L  L  Y  T  Q  L  C  V  K  N  M  A  L  A  V  N  I  C  G  I  D  L  L  E  L  R  C  N  T  W  K  S  I  V  K  L  I  L  H  W  S  L  M  K  R  M  T  M  R  M  G  *  K  K  R  *  M  L  K  C  K  R  L  L  Y  L  F  L  N  Q  K  L  M  A  I  I  P  I  L  E  E  T  H  G  S  F  F  M  L  L  G  I  K  I  Y  S  L  Q  R  G  Y  G  L  E  V  G  V  P  F  V  *  R  I  Y  I  *  K  R  E  S  F  S  L  F  V  F  D  D  S  S  S  N  C  N  V  V  L  E  I  F  F  E  V  I  *  V  Y  F  P  L  L  C  V  Y  G  R  L  T  L  *  *   </second_frame>
            <third_frame>   *  E  G  R  E  K  E  R  S  I  *  V  L  E  S  Q  V  S  R  K  L  S  L  N  R  Q  A  Q  P  G  Q  I  N  E  A  S  L  *  H  R  I  S  *  D  L  T  I  I  K  V  N  N  G  A  I  Q  L  Y  C  R  R  R  R  I  Y  T  N  R  R  L  G  I  S  G  L  F  F  W  C  P  E  K  F  I  T  V  V  H  Y  P  I  A  A  T  K  S  I  D  R  *  A  *  A  R  F  C  F  F  F  I  G  H  L  C  I  N  L  N  P  F  V  P  F  R  S  R  F  L  V  I  L  F  R  R  T  Q  L  Q  R  Q  H  W  F  R  P  S  I  A  G  Y  R  D  F  S  S  F  L  S  L  F  G  I  R  S  H  D  P  L  E  K  F  F  S  F  T  F  T  D  P  Q  F  A  L  P  L  R  F  C  *  G  I  F  V  V  L  S  S  K  E  R  P  K  W  S  *  K  S  L  L  *  S  L  A  C  A  Y  C  Y  L  C  I  L  F  I  S  R  I  E  K  S  Q  I  K  L  H  *  I  R  T  W  D  W  V  N  L  A  R  D  V  D  S  S  N  G  V  C  F  F  L  R  F  D  C  T  G  M  L  F  T  S  K  E  *  R  *  L  H  G  *  V  *  R  S  S  S  V  P  S  R  W  S  Y  C  Y  P  S  V  Q  L  P  P  C  S  S  C  D  C  D  Y  F  C  I  L  N  C  V  *  K  T  W  H  W  P  *  T  Y  A  V  *  T  Y  W  S  *  D  A  T  L  G  N  R  *  S  S  S  F  Y  I  G  V  *  *  R  G  *  Q  *  E  W  D  K  R  R  D  E  C  *  N  A  K  G  Y  C  T  C  S  *  I  R  N  *  W  L  S  Y  P  S  L  R  K  P  M  V  H  F  L  C  Y  W  V  *  R  Y  I  L  C  R  G  V  M  V  *  R  L  G  F  P  L  Y  K  E  F  T  Y  R  K  E  K  V  S  V  F  L  Y  L  M  I  L  V  Q  I  V  M  L  S  *  K  F  S  L  K  *  F  K  Y  I  F  L  Y  C  V  S  M  E  D  L  L  F  D  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92192" stop="93214"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1020</number_coding_nucleotides>
                  <number_encoded_amino_acids>340</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKSTMGLFSYTVAGGGFILIGAWESLVSSSGALKNSSPSSTTQSPPQNPSTDKHEQDSVFSSSVTFVLILILSFLFVLDSLLSFFDALNSKDNIGSVLQLQVIAISLLFFLYSVLGLMTRLKSSFHLPSPILNLLCLFAFAEEFLLFYLQRKDPSGVENRYYNLLLVPIAICAFCSFLELKNPKSNYTRLGRGIGLILQGTWTLQMGFAFFSDLIAQGCYLHQRSRGNYTVKCKGHPQYHRGGAIATLQFNCHLALLVTVITFVYSIVCKKHGIGREHMRYRPIGAEMQHLEIDSQAHFTLESDEEDDNENGIKEEMNVEMQKAIVPVPESETNGYHTHP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="93488" PGL_stop="92687"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93488" e_stop="92687"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="93488" e_stop="92687" e_length="802"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93488" stop="92883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93428" stop="92687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578104" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCTTTTGTTAAGAAAGTTAGTCGTCATTACTATCAAAGAGTAAGTCTTCCATAGACACACAATAAAGGAAAATATACTTAAATCACTTCAAAGAAAATTTCTAAGACAACATTACAATTTGAACTAGAATCATCAAATACAAAAAGACTGAAACTTTCTCTTTTCTATATGTAAATTCTTTATACAAAGGGAACCCCAACCTCTAAACCATAACCCCTCTGCAAAGAATATATCTTTATACCCAGTAACATAAAAAATGAACCATGGGTTTCCTCAAGGATGGGTATGATAGCCATTAGTTTCTGATTCAGGAACAGGTACAATAGCCTTTTGCATTTCAACATTCATCTCTTCTTTTATCCCATTCTCATTGTCATCCTCTTCATCAGACTCCAATGTAAAATGAGCTTGACTATCGATTTCCAAGTGTTGCATCTCAGCTCCAATAGGTCTATACCGCATATGTTCACGGCCAATGCCATGTTTTTTACACACAATTGAGTATACAAAAGTAATCACAGTCACAAGAAGAGCAAGGTGGCAATTGAACTGAAGGGTAGCAATAGCTCCACCTCGATGGTACTGAGGATGACCTTTACACTTAACCGTGTAATTACCTCTACTCCTTTGATGTAAATAGCATCCCTGTGCAATCAAATCGGAGAAAAAAGCAAACCCCATTTGAAGAGTCCACGTCCCTTGCAAGATTAACCCAATCCCACGTCCTAATCTAGTGTAATTTGATTTGGGATTTTTCAATTCTAGAAATGAACAAAATGCACAAATAGCAATAGGCACAAG</gDNA_template>
            <first_frame> S  F  C  *  E  S  *  S  S  L  L  S  K  S  K  S  S  I  D  T  Q  *  R  K  I  Y  L  N  H  F  K  E  N  F  *  D  N  I  T  I  *  T  R  I  I  K  Y  K  K  T  E  T  F  S  F  L  Y  V  N  S  L  Y  K  G  N  P  N  L  *  T  I  T  P  L  Q  R  I  Y  L  Y  T  Q  *  H  K  K  *  T  M  G  F  L  K  D  G  Y  D  S  H  *  F  L  I  Q  E  Q  V  Q  *  P  F  A  F  Q  H  S  S  L  L  L  S  H  S  H  C  H  P  L  H  Q  T  P  M  *  N  E  L  D  Y  R  F  P  S  V  A  S  Q  L  Q  *  V  Y  T  A  Y  V  H  G  Q  C  H  V  F  Y  T  Q  L  S  I  Q  K  *  S  Q  S  Q  E  E  Q  G  G  N  *  T  E  G  *  Q  *  L  H  L  D  G  T  E  D  D  L  Y  T  *  P  C  N  Y  L  Y  S  F  D  V  N  S  I  P  V  Q  S  N  R  R  K  K  Q  T  P  F  E  E  S  T  S  L  A  R  L  T  Q  S  H  V  L  I  *  C  N  L  I  W  D  F  S  I  L  E  M  N  K  M  H  K  *  Q  *  A  Q  </first_frame>
            <second_frame>  P  F  V  K  K  V  S  R  H  Y  Y  Q  R  V  S  L  P  *  T  H  N  K  G  K  Y  T  *  I  T  S  K  K  I  S  K  T  T  L  Q  F  E  L  E  S  S  N  T  K  R  L  K  L  S  L  F  Y  M  *  I  L  Y  T  K  G  T  P  T  S  K  P  *  P  L  C  K  E  Y  I  F  I  P  S  N  I  K  N  E  P  W  V  S  S  R  M  G  M  I  A  I  S  F  *  F  R  N  R  Y  N  S  L  L  H  F  N  I  H  L  F  F  Y  P  I  L  I  V  I  L  F  I  R  L  Q  C  K  M  S  L  T  I  D  F  Q  V  L  H  L  S  S  N  R  S  I  P  H  M  F  T  A  N  A  M  F  F  T  H  N  *  V  Y  K  S  N  H  S  H  K  K  S  K  V  A  I  E  L  K  G  S  N  S  S  T  S  M  V  L  R  M  T  F  T  L  N  R  V  I  T  S  T  P  L  M  *  I  A  S  L  C  N  Q  I  G  E  K  S  K  P  H  L  K  S  P  R  P  L  Q  D  *  P  N  P  T  S  *  S  S  V  I  *  F  G  I  F  Q  F  *  K  *  T  K  C  T  N  S  N  R  H  K </second_frame>
            <third_frame>   L  L  L  R  K  L  V  V  I  T  I  K  E  *  V  F  H  R  H  T  I  K  E  N  I  L  K  S  L  Q  R  K  F  L  R  Q  H  Y  N  L  N  *  N  H  Q  I  Q  K  D  *  N  F  L  F  S  I  C  K  F  F  I  Q  R  E  P  Q  P  L  N  H  N  P  S  A  K  N  I  S  L  Y  P  V  T  *  K  M  N  H  G  F  P  Q  G  W  V  *  *  P  L  V  S  D  S  G  T  G  T  I  A  F  C  I  S  T  F  I  S  S  F  I  P  F  S  L  S  S  S  S  S  D  S  N  V  K  *  A  *  L  S  I  S  K  C  C  I  S  A  P  I  G  L  Y  R  I  C  S  R  P  M  P  C  F  L  H  T  I  E  Y  T  K  V  I  T  V  T  R  R  A  R  W  Q  L  N  *  R  V  A  I  A  P  P  R  W  Y  *  G  *  P  L  H  L  T  V  *  L  P  L  L  L  *  C  K  *  H  P  C  A  I  K  S  E  K  K  A  N  P  I  *  R  V  H  V  P  C  K  I  N  P  I  P  R  P  N  L  V  *  F  D  L  G  F  F  N  S  R  N  E  Q  N  A  Q  I  A  I  G  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93181" stop="92987"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FRNRYNSLLHFNIHLFFYPILIVILFIRLQCKMSLTIDFQVLHLSSNRSIPHMFTANAMFFTHN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="98405" PGL_stop="97163"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98405" e_stop="98256"/>
            <exon e_start="98095" e_stop="97163"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.550" e_score="1.000"/>
          <exon-only e_score="0.940"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="98405" e_stop="98256" e_length="150"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.550">
            <gDNA_intron_boundary i_start="98255" i_stop="98096" i_length="160"/>
          </intron>
          <exon e_serial="2" e_score="0.940">
            <gDNA_exon_boundary e_start="98095" e_stop="97163" e_length="933"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98405" stop="98256"/>
              <exon start="98095" stop="97538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540973" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97925" stop="97163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97916" stop="97413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97787" stop="97164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540975" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97758" stop="97388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97642" stop="97189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430448" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97634" stop="97164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294217" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTTATACACATAACACGGATGGTGAAATTATTCATATCAAGTCCTTGGGAGGTCATATAGTTAAAGCTATTAGAGCGGCTACCTCAAGATTGACCTGTGGTGAGATTGCGGTACCAGATACCAACAAGTCAAAAGTTGTTGAGATCGA : ACTTGAAAATGCACCACTCTGCCAACAAGATTCAGGCAGCACGGAGGGTACGGATAAAAAGCCGGAGAATGGGATAGTAGAAATTCTAAAAGTAGTACTACCTCTACTGCCAGTATGGACTATGCTTCTGATGTTTGCAGTGATTTTTCAACAACCTGCAACATTTTTCACTAAACAAGGTATGACAATGAGGAGAAACATCGGAAGCAGCTTCCGAATTCCACCAGCTGCACTTCAGAGTTCAATCACAATATCTATAATCCTGCTTATGCCTCTTTACGACACGTGCTTTATCCCCTTCATTCGTGTTTTGACACGTAATGAGAAAGGCATCACTGTGATGCAGAGAATGGGAATAGGGATGTTTCTTTCAGTGATAGCAATGATAATTGCTGCTGTTACCGAAAGAAAAAGACTGGATATTGCCAGAAATGTAGGTACTTTAACTTCAGAATTCGAAGCTTTGCCAATGAGCATATTTTGGTTGCTGCCTCAGTACATCTTATTGGGAATTTCAGATATATTCACAGTTGTTGGTATGCAAGAGTTCTTTTACTCTGAAGTTCCGATAAATATGAGAACTTTAGGCATAGCTCTTTATACTAGTGTATTTGGTTGTGGTAGTTTCTTCAGCTCATTCCTTATAACAGTGATTGAACATTTGACAAGTTCAATAGGAGAAAAGCAGAACTGGTTCGCCGATGACATGAGCAGAGCCCGTTTAGACAACTATTACTGGTTTCTGGCATTGTCAAGTGCAGCCAGTTTTATGATGTTTATGGTTTTCTGTCGATTTTATAGAAGCAGGACAGTTAATTAGAGTGTTGGTAGTGACTGATAATTTGTTATTGTGGAATGTTGTGTTTTGCACATTCATTTTTCTAAGTAGAAAGTGAAGGTTCTGCACTTGTATATAAAGGAAGATATATCTAG</gDNA_template>
            <first_frame> V  L  Y  T  *  H  G  W  *  N  Y  S  Y  Q  V  L  G  R  S  Y  S  *  S  Y  *  S  G  Y  L  K  I  D  L  W  *  D  C  G  T  R  Y  Q  Q  V  K  S  C  *  D  R  :  T  *  K  C  T  T  L  P  T  R  F  R  Q  H  G  G  Y  G  *  K  A  G  E  W  D  S  R  N  S  K  S  S  T  T  S  T  A  S  M  D  Y  A  S  D  V  C  S  D  F  S  T  T  C  N  I  F  H  *  T  R  Y  D  N  E  E  K  H  R  K  Q  L  P  N  S  T  S  C  T  S  E  F  N  H  N  I  Y  N  P  A  Y  A  S  L  R  H  V  L  Y  P  L  H  S  C  F  D  T  *  *  E  R  H  H  C  D  A  E  N  G  N  R  D  V  S  F  S  D  S  N  D  N  C  C  C  Y  R  K  K  K  T  G  Y  C  Q  K  C  R  Y  F  N  F  R  I  R  S  F  A  N  E  H  I  L  V  A  A  S  V  H  L  I  G  N  F  R  Y  I  H  S  C  W  Y  A  R  V  L  L  L  *  S  S  D  K  Y  E  N  F  R  H  S  S  L  Y  *  C  I  W  L  W  *  F  L  Q  L  I  P  Y  N  S  D  *  T  F  D  K  F  N  R  R  K  A  E  L  V  R  R  *  H  E  Q  S  P  F  R  Q  L  L  L  V  S  G  I  V  K  C  S  Q  F  Y  D  V  Y  G  F  L  S  I  L  *  K  Q  D  S  *  L  E  C  W  *  *  L  I  I  C  Y  C  G  M  L  C  F  A  H  S  F  F  *  V  E  S  E  G  S  A  L  V  Y  K  G  R  Y  I  * </first_frame>
            <second_frame>  F  Y  T  H  N  T  D  G  E  I  I  H  I  K  S  L  G  G  H  I  V  K  A  I  R  A  A  T  S  R  L  T  C  G  E  I  A  V  P  D  T  N  K  S  K  V  V  E  I  E :   L  E  N  A  P  L  C  Q  Q  D  S  G  S  T  E  G  T  D  K  K  P  E  N  G  I  V  E  I  L  K  V  V  L  P  L  L  P  V  W  T  M  L  L  M  F  A  V  I  F  Q  Q  P  A  T  F  F  T  K  Q  G  M  T  M  R  R  N  I  G  S  S  F  R  I  P  P  A  A  L  Q  S  S  I  T  I  S  I  I  L  L  M  P  L  Y  D  T  C  F  I  P  F  I  R  V  L  T  R  N  E  K  G  I  T  V  M  Q  R  M  G  I  G  M  F  L  S  V  I  A  M  I  I  A  A  V  T  E  R  K  R  L  D  I  A  R  N  V  G  T  L  T  S  E  F  E  A  L  P  M  S  I  F  W  L  L  P  Q  Y  I  L  L  G  I  S  D  I  F  T  V  V  G  M  Q  E  F  F  Y  S  E  V  P  I  N  M  R  T  L  G  I  A  L  Y  T  S  V  F  G  C  G  S  F  F  S  S  F  L  I  T  V  I  E  H  L  T  S  S  I  G  E  K  Q  N  W  F  A  D  D  M  S  R  A  R  L  D  N  Y  Y  W  F  L  A  L  S  S  A  A  S  F  M  M  F  M  V  F  C  R  F  Y  R  S  R  T  V  N  *  S  V  G  S  D  *  *  F  V  I  V  E  C  C  V  L  H  I  H  F  S  K  *  K  V  K  V  L  H  L  Y  I  K  E  D  I  S   </second_frame>
            <third_frame>   F  I  H  I  T  R  M  V  K  L  F  I  S  S  P  W  E  V  I  *  L  K  L  L  E  R  L  P  Q  D  *  P  V  V  R  L  R  Y  Q  I  P  T  S  Q  K  L  L  R  S   : N  L  K  M  H  H  S  A  N  K  I  Q  A  A  R  R  V  R  I  K  S  R  R  M  G  *  *  K  F  *  K  *  Y  Y  L  Y  C  Q  Y  G  L  C  F  *  C  L  Q  *  F  F  N  N  L  Q  H  F  S  L  N  K  V  *  Q  *  G  E  T  S  E  A  A  S  E  F  H  Q  L  H  F  R  V  Q  S  Q  Y  L  *  S  C  L  C  L  F  T  T  R  A  L  S  P  S  F  V  F  *  H  V  M  R  K  A  S  L  *  C  R  E  W  E  *  G  C  F  F  Q  *  *  Q  *  *  L  L  L  L  P  K  E  K  D  W  I  L  P  E  M  *  V  L  *  L  Q  N  S  K  L  C  Q  *  A  Y  F  G  C  C  L  S  T  S  Y  W  E  F  Q  I  Y  S  Q  L  L  V  C  K  S  S  F  T  L  K  F  R  *  I  *  E  L  *  A  *  L  F  I  L  V  Y  L  V  V  V  V  S  S  A  H  S  L  *  Q  *  L  N  I  *  Q  V  Q  *  E  K  S  R  T  G  S  P  M  T  *  A  E  P  V  *  T  T  I  T  G  F  W  H  C  Q  V  Q  P  V  L  *  C  L  W  F  S  V  D  F  I  E  A  G  Q  L  I  R  V  L  V  V  T  D  N  L  L  L  W  N  V  V  F  C  T  F  I  F  L  S  R  K  *  R  F  C  T  C  I  *  R  K  I  Y  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98404" stop="98256"/>
                    <exon start="98095" stop="97276"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>966</number_coding_nucleotides>
                  <number_encoded_amino_acids>322</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYTHNTDGEIIHIKSLGGHIVKAIRAATSRLTCGEIAVPDTNKSKVVEIELENAPLCQQDSGSTEGTDKKPENGIVEILKVVLPLLPVWTMLLMFAVIFQQPATFFTKQGMTMRRNIGSSFRIPPAALQSSITISIILLMPLYDTCFIPFIRVLTRNEKGITVMQRMGIGMFLSVIAMIIAAVTERKRLDIARNVGTLTSEFEALPMSIFWLLPQYILLGISDIFTVVGMQEFFYSEVPINMRTLGIALYTSVFGCGSFFSSFLITVIEHLTSSIGEKQNWFADDMSRARLDNYYWFLALSSAASFMMFMVFCRFYRSRTVN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="98245" PGL_stop="98800"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98245" e_stop="98800"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.969">
            <gDNA_exon_boundary e_start="98245" e_stop="98800" e_length="556"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98245" stop="98800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420549" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAACACTTACTCGATCTCAACAACTTTTGACTTGTTGGTATCTGGTACCGCAATCTCACCACAGGTCAATCTTGAGGTAGCCGCTCTAATAGCTTTAACTATATGACCTCCCAAGGACTTGATATGAATAATTTCACCATCCGTGTTATGTGTATAAAACCTGTTGCCAAATCTGAAGACTACAATCGACACTATCATGGCAATCGAGGGAATGGCGAAACCTAATCCCCATCCTAACGTGTCCTGTATGTACGACATAATGGACACTCCAAGTAGACTGCCACAACATATGCCAAAATACCACCAGTGGAAAAATGTGCTCTTTTTCTTGGAGCTTTGGTCATTCTTTGTACAGGGCAATTCTTCTTCGTCATCCAATTGGTCCGCTGCAAAAGCTTGTAAGGACGGGTTGTAACCCGCTTGGCCTAGTGAAATTAAATGCAGAGACCATGATAACGATGAAGAGAAGCCCGATTTGTCCAAGGATGTCCATGGCCATTGTAATGCCAATGATGTCAAAGCTAAAAGACCCTGATTATTTGATTGTCAAAAAGA</gDNA_template>
            <first_frame> E  T  L  T  R  S  Q  Q  L  L  T  C  W  Y  L  V  P  Q  S  H  H  R  S  I  L  R  *  P  L  *  *  L  *  L  Y  D  L  P  R  T  *  Y  E  *  F  H  H  P  C  Y  V  Y  K  T  C  C  Q  I  *  R  L  Q  S  T  L  S  W  Q  S  R  E  W  R  N  L  I  P  I  L  T  C  P  V  C  T  T  *  W  T  L  Q  V  D  C  H  N  I  C  Q  N  T  T  S  G  K  M  C  S  F  S  W  S  F  G  H  S  L  Y  R  A  I  L  L  R  H  P  I  G  P  L  Q  K  L  V  R  T  G  C  N  P  L  G  L  V  K  L  N  A  E  T  M  I  T  M  K  R  S  P  I  C  P  R  M  S  M  A  I  V  M  P  M  M  S  K  L  K  D  P  D  Y  L  I  V  K  K  </first_frame>
            <second_frame>  K  H  L  L  D  L  N  N  F  *  L  V  G  I  W  Y  R  N  L  T  T  G  Q  S  *  G  S  R  S  N  S  F  N  Y  M  T  S  Q  G  L  D  M  N  N  F  T  I  R  V  M  C  I  K  P  V  A  K  S  E  D  Y  N  R  H  Y  H  G  N  R  G  N  G  E  T  *  S  P  S  *  R  V  L  Y  V  R  H  N  G  H  S  K  *  T  A  T  T  Y  A  K  I  P  P  V  E  K  C  A  L  F  L  G  A  L  V  I  L  C  T  G  Q  F  F  F  V  I  Q  L  V  R  C  K  S  L  *  G  R  V  V  T  R  L  A  *  *  N  *  M  Q  R  P  *  *  R  *  R  E  A  R  F  V  Q  G  C  P  W  P  L  *  C  Q  *  C  Q  S  *  K  T  L  I  I  *  L  S  K  R </second_frame>
            <third_frame>   N  T  Y  S  I  S  T  T  F  D  L  L  V  S  G  T  A  I  S  P  Q  V  N  L  E  V  A  A  L  I  A  L  T  I  *  P  P  K  D  L  I  *  I  I  S  P  S  V  L  C  V  *  N  L  L  P  N  L  K  T  T  I  D  T  I  M  A  I  E  G  M  A  K  P  N  P  H  P  N  V  S  C  M  Y  D  I  M  D  T  P  S  R  L  P  Q  H  M  P  K  Y  H  Q  W  K  N  V  L  F  F  L  E  L  W  S  F  F  V  Q  G  N  S  S  S  S  S  N  W  S  A  A  K  A  C  K  D  G  L  *  P  A  W  P  S  E  I  K  C  R  D  H  D  N  D  E  E  K  P  D  L  S  K  D  V  H  G  H  C  N  A  N  D  V  K  A  K  R  P  *  L  F  D  C  Q  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98506" stop="98799"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WTLQVDCHNICQNTTSGKMCSFSWSFGHSLYRAILLRHPIGPLQKLVRTGCNPLGLVKLNAETMITMKRSPICPRMSMAIVMPMMSKLKDPDYLIVKK</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98403" stop="98660"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLLPNLKTTIDTIMAIEGMAKPNPHPNVSCMYDIMDTPSRLPQHMPKYHQWKNVLFFLELWSFFVQGNSSSSSNWSAAKACKDGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="-" PGL_start="107914" PGL_stop="106335"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107914" e_stop="106335"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="107914" e_stop="106335" e_length="1580"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107914" stop="107192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107914" stop="107205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107365" stop="106708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373309" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107365" stop="106901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106813" stop="106353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217519" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106810" stop="106335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219220" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106702" stop="106335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218015" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCATACAAGGTGGTGGGATTATGATTATCTCGGAGGGCCATTTGGTACAGGAGGTCTATTCTTACCCAAAGACAGCATGGGACAAGTCTCCAATTTCCCATAGCACCCGTATATATAACGGTCACAATACCATACAGGAACACATTATTGAGAAGGAGTATCATGTTGAGCTTCTTGGTCATGAACTCAACGACAGGGAATTGATAGTTAGGTACAAGACTGATATTGAAAACAAAAGGATTTTCTATTCTGATCTAAATGGATTCCAAATGAGCCGTAGAGAATCTTATGATAAGATCCCTACACAGGGCAACTATTACCCAATACCTTCCGTTGCATTTATGCAAGGACTACATGGAGAGCGCTTCTCTGTCCACACTAGGCAGTCTTTGGGTGTTGCAAGTCTCAAGGATGGATGGTTAGAGATAATGCTTGACAGGAGATTGGTAAGGGATGATGGACGTGGTCTAGGCCAAGGAGTGATGGATAACCGTGCAATGAATGTTGTTTTACATATCCTTGTGGAGTCTAATGTTACAGAAGCAAACCAAACTACAGGTCCTCATCCTCTAAATCCGTCTCTTCTATCGCATTTGGTTGGTGCCCACCTAAACTATCCTCTTCATGTATTCATTGCCAAGAAATCTGAGGAAATCTCTGTACAGCCACCCCCTAGATCCTTTTCTCCCCTGGCAGCTTCTTTACCATGTGACTTGCATATTGTCAACTTCAAGGTTCCTCGTCCTCTCAAGTATACCCAGCAACAATTTGAAGAGCCTAGGTTTGCCTTAGTCTTTCAGAGACGACACTGGGATTCTTCTTACTGTAGAAAGGCCAGGTCAGAATGTTCAAGTGTAGCTGATGTGCCCGTTAATCTGTTTTACATGTTCAAGAATCTGGCTGTGTTGAATGCAAAGGCTACTTCTTTAAATCTTTTGCATGATGACATAGAGATACTTGGCTATGGCGACCACTTTGGAGATGGAGCTCATGATGGGCATGTCCTCATTTCACCCATGGAGGTACAGGCTTACAAGTTGGAGCTAAGGCCCCACTAGTGAAGGTATAGATCACTTGTATATCCTTTTCCCAACTGAAGCTGAATTAGGGTGTGCTAGTTCAAGGACTACCGCTGCAACTCTGTTTTCCACATTACAACTTCAAGATGTAGTGTATTTTGGAGAGATGAAGGTAGAAATTGTCACAGTTGCGGTTTGCCTAGAGGGTTTTTGACATTGTCAGTTTGAGGCTTGAGGGCTTGAGAATTGTTCTAGCTGTAACCACAGCTACTTCAGAACACTTCCAGAGAAGAAGGTTATGTCACTGAAACTACTGGTGCTAACAGAAGATCTCATCTTATATGAAGGAGAAGTGCTTTGCACATGGTTCTCTTCCAAGAAGATGTTAAAGTAAGTGGGATTTAGAATGGTTAGGTAATATTATAGGCTTAAGTTAAGGTTGTTATTAGAATTTTTGTTACTATTAAGCTAATGATGACACACTGCTAGACAGATTGTATGCAAATGATGAGTCTTTTTGAAACATTTGTTTTTGAAAAAAGATTTTCACGGGATGGAAA</gDNA_template>
            <first_frame> I  I  Q  G  G  G  I  M  I  I  S  E  G  H  L  V  Q  E  V  Y  S  Y  P  K  T  A  W  D  K  S  P  I  S  H  S  T  R  I  Y  N  G  H  N  T  I  Q  E  H  I  I  E  K  E  Y  H  V  E  L  L  G  H  E  L  N  D  R  E  L  I  V  R  Y  K  T  D  I  E  N  K  R  I  F  Y  S  D  L  N  G  F  Q  M  S  R  R  E  S  Y  D  K  I  P  T  Q  G  N  Y  Y  P  I  P  S  V  A  F  M  Q  G  L  H  G  E  R  F  S  V  H  T  R  Q  S  L  G  V  A  S  L  K  D  G  W  L  E  I  M  L  D  R  R  L  V  R  D  D  G  R  G  L  G  Q  G  V  M  D  N  R  A  M  N  V  V  L  H  I  L  V  E  S  N  V  T  E  A  N  Q  T  T  G  P  H  P  L  N  P  S  L  L  S  H  L  V  G  A  H  L  N  Y  P  L  H  V  F  I  A  K  K  S  E  E  I  S  V  Q  P  P  P  R  S  F  S  P  L  A  A  S  L  P  C  D  L  H  I  V  N  F  K  V  P  R  P  L  K  Y  T  Q  Q  Q  F  E  E  P  R  F  A  L  V  F  Q  R  R  H  W  D  S  S  Y  C  R  K  A  R  S  E  C  S  S  V  A  D  V  P  V  N  L  F  Y  M  F  K  N  L  A  V  L  N  A  K  A  T  S  L  N  L  L  H  D  D  I  E  I  L  G  Y  G  D  H  F  G  D  G  A  H  D  G  H  V  L  I  S  P  M  E  V  Q  A  Y  K  L  E  L  R  P  H  *  *  R  Y  R  S  L  V  Y  P  F  P  N  *  S  *  I  R  V  C  *  F  K  D  Y  R  C  N  S  V  F  H  I  T  T  S  R  C  S  V  F  W  R  D  E  G  R  N  C  H  S  C  G  L  P  R  G  F  L  T  L  S  V  *  G  L  R  A  *  E  L  F  *  L  *  P  Q  L  L  Q  N  T  S  R  E  E  G  Y  V  T  E  T  T  G  A  N  R  R  S  H  L  I  *  R  R  S  A  L  H  M  V  L  F  Q  E  D  V  K  V  S  G  I  *  N  G  *  V  I  L  *  A  *  V  K  V  V  I  R  I  F  V  T  I  K  L  M  M  T  H  C  *  T  D  C  M  Q  M  M  S  L  F  E  T  F  V  F  E  K  R  F  S  R  D  G   </first_frame>
            <second_frame>  S  Y  K  V  V  G  L  *  L  S  R  R  A  I  W  Y  R  R  S  I  L  T  Q  R  Q  H  G  T  S  L  Q  F  P  I  A  P  V  Y  I  T  V  T  I  P  Y  R  N  T  L  L  R  R  S  I  M  L  S  F  L  V  M  N  S  T  T  G  N  *  *  L  G  T  R  L  I  L  K  T  K  G  F  S  I  L  I  *  M  D  S  K  *  A  V  E  N  L  M  I  R  S  L  H  R  A  T  I  T  Q  Y  L  P  L  H  L  C  K  D  Y  M  E  S  A  S  L  S  T  L  G  S  L  W  V  L  Q  V  S  R  M  D  G  *  R  *  C  L  T  G  D  W  *  G  M  M  D  V  V  *  A  K  E  *  W  I  T  V  Q  *  M  L  F  Y  I  S  L  W  S  L  M  L  Q  K  Q  T  K  L  Q  V  L  I  L  *  I  R  L  F  Y  R  I  W  L  V  P  T  *  T  I  L  F  M  Y  S  L  P  R  N  L  R  K  S  L  Y  S  H  P  L  D  P  F  L  P  W  Q  L  L  Y  H  V  T  C  I  L  S  T  S  R  F  L  V  L  S  S  I  P  S  N  N  L  K  S  L  G  L  P  *  S  F  R  D  D  T  G  I  L  L  T  V  E  R  P  G  Q  N  V  Q  V  *  L  M  C  P  L  I  C  F  T  C  S  R  I  W  L  C  *  M  Q  R  L  L  L  *  I  F  C  M  M  T  *  R  Y  L  A  M  A  T  T  L  E  M  E  L  M  M  G  M  S  S  F  H  P  W  R  Y  R  L  T  S  W  S  *  G  P  T  S  E  G  I  D  H  L  Y  I  L  F  P  T  E  A  E  L  G  C  A  S  S  R  T  T  A  A  T  L  F  S  T  L  Q  L  Q  D  V  V  Y  F  G  E  M  K  V  E  I  V  T  V  A  V  C  L  E  G  F  *  H  C  Q  F  E  A  *  G  L  E  N  C  S  S  C  N  H  S  Y  F  R  T  L  P  E  K  K  V  M  S  L  K  L  L  V  L  T  E  D  L  I  L  Y  E  G  E  V  L  C  T  W  F  S  S  K  K  M  L  K  *  V  G  F  R  M  V  R  *  Y  Y  R  L  K  L  R  L  L  L  E  F  L  L  L  L  S  *  *  *  H  T  A  R  Q  I  V  C  K  *  *  V  F  L  K  H  L  F  L  K  K  D  F  H  G  M  E  </second_frame>
            <third_frame>   H  T  R  W  W  D  Y  D  Y  L  G  G  P  F  G  T  G  G  L  F  L  P  K  D  S  M  G  Q  V  S  N  F  P  *  H  P  Y  I  *  R  S  Q  Y  H  T  G  T  H  Y  *  E  G  V  S  C  *  A  S  W  S  *  T  Q  R  Q  G  I  D  S  *  V  Q  D  *  Y  *  K  Q  K  D  F  L  F  *  S  K  W  I  P  N  E  P  *  R  I  L  *  *  D  P  Y  T  G  Q  L  L  P  N  T  F  R  C  I  Y  A  R  T  T  W  R  A  L  L  C  P  H  *  A  V  F  G  C  C  K  S  Q  G  W  M  V  R  D  N  A  *  Q  E  I  G  K  G  *  W  T  W  S  R  P  R  S  D  G  *  P  C  N  E  C  C  F  T  Y  P  C  G  V  *  C  Y  R  S  K  P  N  Y  R  S  S  S  S  K  S  V  S  S  I  A  F  G  W  C  P  P  K  L  S  S  S  C  I  H  C  Q  E  I  *  G  N  L  C  T  A  T  P  *  I  L  F  S  P  G  S  F  F  T  M  *  L  A  Y  C  Q  L  Q  G  S  S  S  S  Q  V  Y  P  A  T  I  *  R  A  *  V  C  L  S  L  S  E  T  T  L  G  F  F  L  L  *  K  G  Q  V  R  M  F  K  C  S  *  C  A  R  *  S  V  L  H  V  Q  E  S  G  C  V  E  C  K  G  Y  F  F  K  S  F  A  *  *  H  R  D  T  W  L  W  R  P  L  W  R  W  S  S  *  W  A  C  P  H  F  T  H  G  G  T  G  L  Q  V  G  A  K  A  P  L  V  K  V  *  I  T  C  I  S  F  S  Q  L  K  L  N  *  G  V  L  V  Q  G  L  P  L  Q  L  C  F  P  H  Y  N  F  K  M  *  C  I  L  E  R  *  R  *  K  L  S  Q  L  R  F  A  *  R  V  F  D  I  V  S  L  R  L  E  G  L  R  I  V  L  A  V  T  T  A  T  S  E  H  F  Q  R  R  R  L  C  H  *  N  Y  W  C  *  Q  K  I  S  S  Y  M  K  E  K  C  F  A  H  G  S  L  P  R  R  C  *  S  K  W  D  L  E  W  L  G  N  I  I  G  L  S  *  G  C  Y  *  N  F  C  Y  Y  *  A  N  D  D  T  L  L  D  R  L  Y  A  N  D  E  S  F  *  N  I  C  F  *  K  K  I  F  T  G  W  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="-"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107914" stop="106856"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1056</number_coding_nucleotides>
                  <number_encoded_amino_acids>352</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIQGGGIMIISEGHLVQEVYSYPKTAWDKSPISHSTRIYNGHNTIQEHIIEKEYHVELLGHELNDRELIVRYKTDIENKRIFYSDLNGFQMSRRESYDKIPTQGNYYPIPSVAFMQGLHGERFSVHTRQSLGVASLKDGWLEIMLDRRLVRDDGRGLGQGVMDNRAMNVVLHILVESNVTEANQTTGPHPLNPSLLSHLVGAHLNYPLHVFIAKKSEEISVQPPPRSFSPLAASLPCDLHIVNFKVPRPLKYTQQQFEEPRFALVFQRRHWDSSYCRKARSECSSVADVPVNLFYMFKNLAVLNAKATSLNLLHDDIEILGYGDHFGDGAHDGHVLISPMEVQAYKLELRPH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="-" PGL_start="108812" PGL_stop="108318"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108812" e_stop="108318"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.925"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="108812" e_stop="108318" e_length="495"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108812" stop="108318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438756" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGCAGTTGATCGTGTTTTGGAGCATAACCTTCGCAGTGCCGAAATGTTGATGGCTTTCCTATTAGGTTACTGCCAGAGAATACAGTGTGAAAAATTGCCTATTGGATTTTCCTACAAATTGACCGCAGCGAGAAGGAACTTGGCACTTTTTCAGCATCATGATGGGGTCACTGGTACTGCGAAGGACCATGTGGTGCAGGACTATGGAACACGGATGCACTTGGCTCTGCAAGACCTTCAAATTTTTATGTCTAAGGCTATTGAGGTGTTACTAGGGATCCGGCATGATAGAAATGACCAACCTCCTTCTCAGTTTGAACCAGCACAGTCAAGATCTAAATATGATGCCCAACCAGTGGTTAAAGCCATCAGCGCTCGTGAAGGAACTGTTCAGACAGTGGTCCTTTTCAATCCATCAGAGCAGACAAGAAATGAAGTTGTCATGGTAACTGTTGAGAGGCCGGATGTAACAATCTTGGACTCAAACTGGACATG</gDNA_template>
            <first_frame> G  S  *  S  C  F  G  A  *  P  S  Q  C  R  N  V  D  G  F  P  I  R  L  L  P  E  N  T  V  *  K  I  A  Y  W  I  F  L  Q  I  D  R  S  E  K  E  L  G  T  F  S  A  S  *  W  G  H  W  Y  C  E  G  P  C  G  A  G  L  W  N  T  D  A  L  G  S  A  R  P  S  N  F  Y  V  *  G  Y  *  G  V  T  R  D  P  A  *  *  K  *  P  T  S  F  S  V  *  T  S  T  V  K  I  *  I  *  C  P  T  S  G  *  S  H  Q  R  S  *  R  N  C  S  D  S  G  P  F  Q  S  I  R  A  D  K  K  *  S  C  H  G  N  C  *  E  A  G  C  N  N  L  G  L  K  L  D  M </first_frame>
            <second_frame>  A  V  D  R  V  L  E  H  N  L  R  S  A  E  M  L  M  A  F  L  L  G  Y  C  Q  R  I  Q  C  E  K  L  P  I  G  F  S  Y  K  L  T  A  A  R  R  N  L  A  L  F  Q  H  H  D  G  V  T  G  T  A  K  D  H  V  V  Q  D  Y  G  T  R  M  H  L  A  L  Q  D  L  Q  I  F  M  S  K  A  I  E  V  L  L  G  I  R  H  D  R  N  D  Q  P  P  S  Q  F  E  P  A  Q  S  R  S  K  Y  D  A  Q  P  V  V  K  A  I  S  A  R  E  G  T  V  Q  T  V  V  L  F  N  P  S  E  Q  T  R  N  E  V  V  M  V  T  V  E  R  P  D  V  T  I  L  D  S  N  W  T   </second_frame>
            <third_frame>   Q  L  I  V  F  W  S  I  T  F  A  V  P  K  C  *  W  L  S  Y  *  V  T  A  R  E  Y  S  V  K  N  C  L  L  D  F  P  T  N  *  P  Q  R  E  G  T  W  H  F  F  S  I  M  M  G  S  L  V  L  R  R  T  M  W  C  R  T  M  E  H  G  C  T  W  L  C  K  T  F  K  F  L  C  L  R  L  L  R  C  Y  *  G  S  G  M  I  E  M  T  N  L  L  L  S  L  N  Q  H  S  Q  D  L  N  M  M  P  N  Q  W  L  K  P  S  A  L  V  K  E  L  F  R  Q  W  S  F  S  I  H  Q  S  R  Q  E  M  K  L  S  W  *  L  L  R  G  R  M  *  Q  S  W  T  Q  T  G  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="-"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108811" stop="108320"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>492</number_coding_nucleotides>
                  <number_encoded_amino_acids>164</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AVDRVLEHNLRSAEMLMAFLLGYCQRIQCEKLPIGFSYKLTAARRNLALFQHHDGVTGTAKDHVVQDYGTRMHLALQDLQIFMSKAIEVLLGIRHDRNDQPPSQFEPAQSRSKYDAQPVVKAISAREGTVQTVVLFNPSEQTRNEVVMVTVERPDVTILDSNWT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="-" PGL_start="111480" PGL_stop="109456"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111480" e_stop="111434"/>
            <exon e_start="111099" e_stop="110950"/>
            <exon e_start="110621" e_stop="110589"/>
            <exon e_start="109585" e_stop="109456"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="111480" e_stop="111434" e_length="47"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="111433" i_stop="111100" i_length="334"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="111099" e_stop="110950" e_length="150"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.982">
            <gDNA_intron_boundary i_start="110949" i_stop="110622" i_length="328"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="110621" e_stop="110589" e_length="33"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.991">
            <gDNA_intron_boundary i_start="110588" i_stop="109586" i_length="1003"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="109585" e_stop="109456" e_length="130"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111480" stop="111434"/>
              <exon start="111099" stop="110950"/>
              <exon start="110621" stop="110589"/>
              <exon start="109585" stop="109456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111090" stop="110950"/>
              <exon start="110621" stop="110589"/>
              <exon start="109585" stop="109481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338952" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GACAGTCCAAGCACATCCTAGATACCCTTGTTGAAACACTTCCAAAG : GATTCCCGGAGAAAATTTATATGGGAAGAGATGTCCTATCTGGAGAGATGGTGGAGGGATGCAACCAACGATAAGAAAGAGGCATTTACCAATCTAGTGAGGAATGGGCAGCTAGAAATTGTTGGAGGTGGTTGGGTGATGAATGATGAG : GCTAATTCACATTACTTTGCAATTATTGAACAG : ATTACAGAAGGAAATATGTGGTTGAATGAGACTATAGGTGTAATTCCTAAAAATTCTTGGGCCATTGATCCCTTCGGCTATTCACCAACTATGGCATATCTTTTGCGGCGTATGGGTTTTGAGAACATGC</gDNA_template>
            <first_frame> D  S  P  S  T  S  *  I  P  L  L  K  H  F  Q  R :   I  P  G  E  N  L  Y  G  K  R  C  P  I  W  R  D  G  G  G  M  Q  P  T  I  R  K  R  H  L  P  I  *  *  G  M  G  S  *  K  L  L  E  V  V  G  *  *  M  M  R :   L  I  H  I  T  L  Q  L  L  N  R :   L  Q  K  E  I  C  G  *  M  R  L  *  V  *  F  L  K  I  L  G  P  L  I  P  S  A  I  H  Q  L  W  H  I  F  C  G  V  W  V  L  R  T  C </first_frame>
            <second_frame>  T  V  Q  A  H  P  R  Y  P  C  *  N  T  S  K   : G  F  P  E  K  I  Y  M  G  R  D  V  L  S  G  E  M  V  E  G  C  N  Q  R  *  E  R  G  I  Y  Q  S  S  E  E  W  A  A  R  N  C  W  R  W  L  G  D  E  *  *   : G  *  F  T  L  L  C  N  Y  *  T   : D  Y  R  R  K  Y  V  V  E  *  D  Y  R  C  N  S  *  K  F  L  G  H  *  S  L  R  L  F  T  N  Y  G  I  S  F  A  A  Y  G  F  *  E  H   </second_frame>
            <third_frame>   Q  S  K  H  I  L  D  T  L  V  E  T  L  P  K  :  D  S  R  R  K  F  I  W  E  E  M  S  Y  L  E  R  W  W  R  D  A  T  N  D  K  K  E  A  F  T  N  L  V  R  N  G  Q  L  E  I  V  G  G  G  W  V  M  N  D  E  :  A  N  S  H  Y  F  A  I  I  E  Q  :  I  T  E  G  N  M  W  L  N  E  T  I  G  V  I  P  K  N  S  W  A  I  D  P  F  G  Y  S  P  T  M  A  Y  L  L  R  R  M  G  F  E  N  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="-"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111478" stop="111434"/>
                    <exon start="111099" stop="110950"/>
                    <exon start="110621" stop="110589"/>
                    <exon start="109585" stop="109457"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>357</number_coding_nucleotides>
                  <number_encoded_amino_acids>119</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSKHILDTLVETLPKDSRRKFIWEEMSYLERWWRDATNDKKEAFTNLVRNGQLEIVGGGWVMNDEANSHYFAIIEQITEGNMWLNETIGVIPKNSWAIDPFGYSPTMAYLLRRMGFENM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="25" PGL_strand="+" PGL_start="113545" PGL_stop="117041"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113545" e_stop="113655"/>
            <exon e_start="115852" e_stop="117041"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.948" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="113545" e_stop="113655" e_length="111"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.948">
            <gDNA_intron_boundary i_start="113656" i_stop="115851" i_length="2196"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="115852" e_stop="117041" e_length="1190"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113545" stop="113655"/>
              <exon start="115852" stop="116608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113561" stop="113655"/>
              <exon start="115852" stop="116310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113561" stop="113655"/>
              <exon start="115852" stop="116273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113574" stop="113655"/>
              <exon start="115852" stop="116304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113579" stop="113655"/>
              <exon start="115852" stop="116351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113583" stop="113655"/>
              <exon start="115852" stop="116197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113585" stop="113655"/>
              <exon start="115852" stop="116310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113594" stop="113655"/>
              <exon start="115852" stop="116446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113599" stop="113655"/>
              <exon start="115852" stop="116361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113603" stop="113655"/>
              <exon start="115852" stop="116530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113608" stop="113655"/>
              <exon start="115852" stop="116273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113611" stop="113655"/>
              <exon start="115852" stop="116245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113613" stop="113655"/>
              <exon start="115852" stop="116496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456280" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115852" stop="116519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116014" stop="116647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116058" stop="116659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E582908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116175" stop="116942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116524" stop="116978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595467" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116566" stop="117041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116639" stop="117041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236852" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGTAAAAAACACTTAAATTATCAACCCCTCTCTCTCTCTCTCTCCAGCTTCGACGCGAAGAAGCCATTCTCCTCTCTATCGTGTTTGCATCCAGAATTTTTCTGTTACAG : TAGCTGTGAGATATCAGTAGCGGCAACAGAAAATGCCAGCCCAGAAGATTGAAACTGGTCACAATGACACAGTTCACGATGTTACTATGGACTATTATGGAAAACGTGTGGCTACAGCATCTTCTGATACCACCATAAAAATAACTGGTGTGAGCAACAATGCTGCTTCGCAACACCTTGCTACGTTGAGTGGCCATACGGGCCCTGTTTGGCAGGCTGGCTGGGCTCACCCCAAATTTGGCTCAATCCTTGCGTCCTGTTCCTATGATGGTAAGGTAATAATCTGGAAGGAAGGCAATCAGAATGAGTGGGCACAAGCTCATGTTTTTAGCGAGCACAAATCATCGGTTAATTCCATCTCCTGGGCTCCTCATGAACTTGGGCTTTGCTTGGCTTGTGGTTCTTCTGATGGTAATATTTCAGTGCACACCGCCAGGTCAGATGGTGGTTGGGACACTACAAGAATTGACCAAGCTCATCCAGTTGGGGTAACATCAGTTTCATGGGCGCCTTCAATGGCTCCTGGTGCTTTAGTTGGTGCAGGTGTGCTTGAACCTGTTCAAAAGCTGGCATCTGGTGGATGTGATAACACTGTTAAAGTTTGGAAGTTGTATAATGGTGTTTGGAAGATGGATTGCTTCCCTGCACTTCAGATGCACACTAACTGGGTGAGAGATGTAGCTTGGGCACCAAACTTGGGACTTCCAAAGTCAACAATTGCTAGTGCTTCAGAGGATGGTACGGTTGTCATATGGACTGTGGGAAAGGAGGGAGATCAGTGGGAGGGCAAGGTTCTAAAAGACTTCAAATCTCCTGTTTGGAGAGTCTCATGGTCTCTTACCGGAAACTTGTTGGCAGTTGCAGCTGGGGATAACAATGTCACTTTGTGGAAAGAAGCTGTTGATGGGGAGTGGCAACAGGCCTCCACTGTTGACCAATAGAGCTGGAACTTGGGAAGTAATAGAATTCATGTTTTTGTGTTCTCTTTCTACCATTCAGACCTTTTTCCTAGCTGAGGCCTGAGTGAGAGTTAGCCCTTTAATTAAGGACTGTTTACTTTGATTTGATTCTTCTCGTTTACTCAGTATGCATTCAATTTCACTTCAGCTATAGACCTTTTTCTTTCTGCCTGTTTTGTGTATGCCTTTTTATGTTGAATTTTCAATATACTTGGTGATTAAATGTGTCAG</gDNA_template>
            <first_frame> Q  *  K  T  L  K  L  S  T  P  L  S  L  S  L  Q  L  R  R  E  E  A  I  L  L  S  I  V  F  A  S  R  I  F  L  L  Q  :  *  L  *  D  I  S  S  G  N  R  K  C  Q  P  R  R  L  K  L  V  T  M  T  Q  F  T  M  L  L  W  T  I  M  E  N  V  W  L  Q  H  L  L  I  P  P  *  K  *  L  V  *  A  T  M  L  L  R  N  T  L  L  R  *  V  A  I  R  A  L  F  G  R  L  A  G  L  T  P  N  L  A  Q  S  L  R  P  V  P  M  M  V  R  *  *  S  G  R  K  A  I  R  M  S  G  H  K  L  M  F  L  A  S  T  N  H  R  L  I  P  S  P  G  L  L  M  N  L  G  F  A  W  L  V  V  L  L  M  V  I  F  Q  C  T  P  P  G  Q  M  V  V  G  T  L  Q  E  L  T  K  L  I  Q  L  G  *  H  Q  F  H  G  R  L  Q  W  L  L  V  L  *  L  V  Q  V  C  L  N  L  F  K  S  W  H  L  V  D  V  I  T  L  L  K  F  G  S  C  I  M  V  F  G  R  W  I  A  S  L  H  F  R  C  T  L  T  G  *  E  M  *  L  G  H  Q  T  W  D  F  Q  S  Q  Q  L  L  V  L  Q  R  M  V  R  L  S  Y  G  L  W  E  R  R  E  I  S  G  R  A  R  F  *  K  T  S  N  L  L  F  G  E  S  H  G  L  L  P  E  T  C  W  Q  L  Q  L  G  I  T  M  S  L  C  G  K  K  L  L  M  G  S  G  N  R  P  P  L  L  T  N  R  A  G  T  W  E  V  I  E  F  M  F  L  C  S  L  S  T  I  Q  T  F  F  L  A  E  A  *  V  R  V  S  P  L  I  K  D  C  L  L  *  F  D  S  S  R  L  L  S  M  H  S  I  S  L  Q  L  *  T  F  F  F  L  P  V  L  C  M  P  F  Y  V  E  F  S  I  Y  L  V  I  K  C  V   </first_frame>
            <second_frame>  S  K  K  H  L  N  Y  Q  P  L  S  L  S  L  S  S  F  D  A  K  K  P  F  S  S  L  S  C  L  H  P  E  F  F  C  Y  S :   S  C  E  I  S  V  A  A  T  E  N  A  S  P  E  D  *  N  W  S  Q  *  H  S  S  R  C  Y  Y  G  L  L  W  K  T  C  G  Y  S  I  F  *  Y  H  H  K  N  N  W  C  E  Q  Q  C  C  F  A  T  P  C  Y  V  E  W  P  Y  G  P  C  L  A  G  W  L  G  S  P  Q  I  W  L  N  P  C  V  L  F  L  *  W  *  G  N  N  L  E  G  R  Q  S  E  *  V  G  T  S  S  C  F  *  R  A  Q  I  I  G  *  F  H  L  L  G  S  S  *  T  W  A  L  L  G  L  W  F  F  *  W  *  Y  F  S  A  H  R  Q  V  R  W  W  L  G  H  Y  K  N  *  P  S  S  S  S  W  G  N  I  S  F  M  G  A  F  N  G  S  W  C  F  S  W  C  R  C  A  *  T  C  S  K  A  G  I  W  W  M  *  *  H  C  *  S  L  E  V  V  *  W  C  L  E  D  G  L  L  P  C  T  S  D  A  H  *  L  G  E  R  C  S  L  G  T  K  L  G  T  S  K  V  N  N  C  *  C  F  R  G  W  Y  G  C  H  M  D  C  G  K  G  G  R  S  V  G  G  Q  G  S  K  R  L  Q  I  S  C  L  E  S  L  M  V  S  Y  R  K  L  V  G  S  C  S  W  G  *  Q  C  H  F  V  E  R  S  C  *  W  G  V  A  T  G  L  H  C  *  P  I  E  L  E  L  G  K  *  *  N  S  C  F  C  V  L  F  L  P  F  R  P  F  S  *  L  R  P  E  *  E  L  A  L  *  L  R  T  V  Y  F  D  L  I  L  L  V  Y  S  V  C  I  Q  F  H  F  S  Y  R  P  F  S  F  C  L  F  C  V  C  L  F  M  L  N  F  Q  Y  T  W  *  L  N  V  S  </second_frame>
            <third_frame>   V  K  N  T  *  I  I  N  P  S  L  S  L  S  P  A  S  T  R  R  S  H  S  P  L  Y  R  V  C  I  Q  N  F  S  V  T   : V  A  V  R  Y  Q  *  R  Q  Q  K  M  P  A  Q  K  I  E  T  G  H  N  D  T  V  H  D  V  T  M  D  Y  Y  G  K  R  V  A  T  A  S  S  D  T  T  I  K  I  T  G  V  S  N  N  A  A  S  Q  H  L  A  T  L  S  G  H  T  G  P  V  W  Q  A  G  W  A  H  P  K  F  G  S  I  L  A  S  C  S  Y  D  G  K  V  I  I  W  K  E  G  N  Q  N  E  W  A  Q  A  H  V  F  S  E  H  K  S  S  V  N  S  I  S  W  A  P  H  E  L  G  L  C  L  A  C  G  S  S  D  G  N  I  S  V  H  T  A  R  S  D  G  G  W  D  T  T  R  I  D  Q  A  H  P  V  G  V  T  S  V  S  W  A  P  S  M  A  P  G  A  L  V  G  A  G  V  L  E  P  V  Q  K  L  A  S  G  G  C  D  N  T  V  K  V  W  K  L  Y  N  G  V  W  K  M  D  C  F  P  A  L  Q  M  H  T  N  W  V  R  D  V  A  W  A  P  N  L  G  L  P  K  S  T  I  A  S  A  S  E  D  G  T  V  V  I  W  T  V  G  K  E  G  D  Q  W  E  G  K  V  L  K  D  F  K  S  P  V  W  R  V  S  W  S  L  T  G  N  L  L  A  V  A  A  G  D  N  N  V  T  L  W  K  E  A  V  D  G  E  W  Q  Q  A  S  T  V  D  Q  *  S  W  N  L  G  S  N  R  I  H  V  F  V  F  S  F  Y  H  S  D  L  F  P  S  *  G  L  S  E  S  *  P  F  N  *  G  L  F  T  L  I  *  F  F  S  F  T  Q  Y  A  F  N  F  T  S  A  I  D  L  F  L  S  A  C  F  V  Y  A  F  L  C  *  I  F  N  I  L  G  D  *  M  C  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="+"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115872" stop="116792"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>918</number_coding_nucleotides>
                  <number_encoded_amino_acids>306</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RQQKMPAQKIETGHNDTVHDVTMDYYGKRVATASSDTTIKITGVSNNAASQHLATLSGHTGPVWQAGWAHPKFGSILASCSYDGKVIIWKEGNQNEWAQAHVFSEHKSSVNSISWAPHELGLCLACGSSDGNISVHTARSDGGWDTTRIDQAHPVGVTSVSWAPSMAPGALVGAGVLEPVQKLASGGCDNTVKVWKLYNGVWKMDCFPALQMHTNWVRDVAWAPNLGLPKSTIASASEDGTVVIWTVGKEGDQWEGKVLKDFKSPVWRVSWSLTGNLLAVAAGDNNVTLWKEAVDGEWQQASTVDQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="26" PGL_strand="-" PGL_start="117062" PGL_stop="116579"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="117062" e_stop="116579"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.901">
            <gDNA_exon_boundary e_start="117062" e_stop="116579" e_length="484"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117062" stop="116579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E593032" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGTGGTCATATAATAAAACCTGACACATTTAATCACCAAGTATATTGAAAATTCAACATAAAAAGGCATACACAAAACAGGCAGAAAGAAAAAGGTCTATAGCTGAAGTGAAATTGAATGCATACTGAGTAAACGAGAAGAATCAAATCAAAGTAAACAGTCCTTAATTAAAGGGCTAACTCTCACTCAGGCCTCAGCTAGGAAAAAGGTCTGAATGGTAGAAAGAGAACACAAAAACATGAATTCTATTACTTCCCAAGTTCCAGCTCTATTGGTCAACAGTGGAGGCCTGTTGCCACTCCCCATCAACAGCTTCTTTCCACAAAGTGACATTGTTATCCCCAGCTGCAACTGCCAACAAGTTTCCGGTAAGAGACCATGAGACTCTCCAAACAGGAGATTTGAAGTCTTTTAGAACCTTGCCCTCCCACTGATCTCCCTCCTTTCCCACAGTCCATATGACAACCGTACCATCCTCTGAA</gDNA_template>
            <first_frame> K  V  V  I  *  *  N  L  T  H  L  I  T  K  Y  I  E  N  S  T  *  K  G  I  H  K  T  G  R  K  K  K  V  Y  S  *  S  E  I  E  C  I  L  S  K  R  E  E  S  N  Q  S  K  Q  S  L  I  K  G  L  T  L  T  Q  A  S  A  R  K  K  V  *  M  V  E  R  E  H  K  N  M  N  S  I  T  S  Q  V  P  A  L  L  V  N  S  G  G  L  L  P  L  P  I  N  S  F  F  P  Q  S  D  I  V  I  P  S  C  N  C  Q  Q  V  S  G  K  R  P  *  D  S  P  N  R  R  F  E  V  F  *  N  L  A  L  P  L  I  S  L  L  S  H  S  P  Y  D  N  R  T  I  L  *  </first_frame>
            <second_frame>  K  W  S  Y  N  K  T  *  H  I  *  S  P  S  I  L  K  I  Q  H  K  K  A  Y  T  K  Q  A  E  R  K  R  S  I  A  E  V  K  L  N  A  Y  *  V  N  E  K  N  Q  I  K  V  N  S  P  *  L  K  G  *  L  S  L  R  P  Q  L  G  K  R  S  E  W  *  K  E  N  T  K  T  *  I  L  L  L  P  K  F  Q  L  Y  W  S  T  V  E  A  C  C  H  S  P  S  T  A  S  F  H  K  V  T  L  L  S  P  A  A  T  A  N  K  F  P  V  R  D  H  E  T  L  Q  T  G  D  L  K  S  F  R  T  L  P  S  H  *  S  P  S  F  P  T  V  H  M  T  T  V  P  S  S  E </second_frame>
            <third_frame>   S  G  H  I  I  K  P  D  T  F  N  H  Q  V  Y  *  K  F  N  I  K  R  H  T  Q  N  R  Q  K  E  K  G  L  *  L  K  *  N  *  M  H  T  E  *  T  R  R  I  K  S  K  *  T  V  L  N  *  R  A  N  S  H  S  G  L  S  *  E  K  G  L  N  G  R  K  R  T  Q  K  H  E  F  Y  Y  F  P  S  S  S  S  I  G  Q  Q  W  R  P  V  A  T  P  H  Q  Q  L  L  S  T  K  *  H  C  Y  P  Q  L  Q  L  P  T  S  F  R  *  E  T  M  R  L  S  K  Q  E  I  *  S  L  L  E  P  C  P  P  T  D  L  P  P  F  P  Q  S  I  *  Q  P  Y  H  P  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0189G15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="27" PGL_strand="+" PGL_start="120663" PGL_stop="124152"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="120684" e_stop="120868"/>
            <exon e_start="122480" e_stop="122532"/>
            <exon e_start="122609" e_stop="122679"/>
            <exon e_start="122795" e_stop="122847"/>
            <exon e_start="122919" e_stop="122996"/>
            <exon e_start="123071" e_stop="123127"/>
            <exon e_start="123291" e_stop="123360"/>
            <exon e_start="123513" e_stop="123580"/>
            <exon e_start="123651" e_stop="123723"/>
            <exon e_start="123812" e_stop="123873"/>
            <exon e_start="123967" e_stop="124152"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.404" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.398" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.928" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.840" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.744" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="120684" e_stop="120868" e_length="185"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.979">
            <gDNA_intron_boundary i_start="120869" i_stop="122479" i_length="1611"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="122480" e_stop="122532" e_length="53"/>
          </exon>
          <intron i_serial="2" don_prob="0.964" acc_prob="0.976">
            <gDNA_intron_boundary i_start="122533" i_stop="122608" i_length="76"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="122609" e_stop="122679" e_length="71"/>
          </exon>
          <intron i_serial="3" don_prob="0.404" acc_prob="0.967">
            <gDNA_intron_boundary i_start="122680" i_stop="122794" i_length="115"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="122795" e_stop="122847" e_length="53"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="0.949">
            <gDNA_intron_boundary i_start="122848" i_stop="122918" i_length="71"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="122919" e_stop="122996" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.398" acc_prob="0.978">
            <gDNA_intron_boundary i_start="122997" i_stop="123070" i_length="74"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="123071" e_stop="123127" e_length="57"/>
          </exon>
          <intron i_serial="6" don_prob="0.928" acc_prob="0.962">
            <gDNA_intron_boundary i_start="123128" i_stop="123290" i_length="163"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="123291" e_stop="123360" e_length="70"/>
          </exon>
          <intron i_serial="7" don_prob="0.980" acc_prob="0.840">
            <gDNA_intron_boundary i_start="123361" i_stop="123512" i_length="152"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="123513" e_stop="123580" e_length="68"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="123581" i_stop="123650" i_length="70"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="123651" e_stop="123723" e_length="73"/>
          </exon>
          <intron i_serial="9" don_prob="0.990" acc_prob="0.971">
            <gDNA_intron_boundary i_start="123724" i_stop="123811" i_length="88"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="123812" e_stop="123873" e_length="62"/>
          </exon>
          <intron i_serial="10" don_prob="0.744" acc_prob="0.994">
            <gDNA_intron_boundary i_start="123874" i_stop="123966" i_length="93"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="123967" e_stop="124152" e_length="186"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120684" stop="120868"/>
              <exon start="122480" stop="122532"/>
              <exon start="122609" stop="122679"/>
              <exon start="122795" stop="122847"/>
              <exon start="122919" stop="122996"/>
              <exon start="123071" stop="123127"/>
              <exon start="123291" stop="123360"/>
              <exon start="123513" stop="123558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122941" stop="122996"/>
              <exon start="123071" stop="123127"/>
              <exon start="123291" stop="123360"/>
              <exon start="123513" stop="123580"/>
              <exon start="123651" stop="123723"/>
              <exon start="123812" stop="123873"/>
              <exon start="123967" stop="124152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122941" stop="122996"/>
              <exon start="123071" stop="123127"/>
              <exon start="123291" stop="123360"/>
              <exon start="123513" stop="123580"/>
              <exon start="123651" stop="123723"/>
              <exon start="123812" stop="123873"/>
              <exon start="123967" stop="124150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122941" stop="122996"/>
              <exon start="123071" stop="123127"/>
              <exon start="123291" stop="123360"/>
              <exon start="123513" stop="123580"/>
              <exon start="123651" stop="123699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122941" stop="122996"/>
              <exon start="123071" stop="123127"/>
              <exon start="123291" stop="123360"/>
              <exon start="123513" stop="123580"/>
              <exon start="123651" stop="123690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239519" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="27" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCTTTCTTCAAAGCTTGAGCGGTTTATCTCGAATTTTCCGTAGGGTTCTTCTCTGATCGCTTTCAACTTTCGATAACAGAGAAACCTAGCAATGTCATCGTCACTCCATACTGAAGATTCTCAATGGAAAAACCCTAGCATTTATAGCCGCAAGGACAAATCGCTCGGTCTTCTTTGCTCCAA : GTAGAAATGTGTGGAGGAAGCTGATGATATGCCTTAAAAACATAAAAACCCAA : TTTCTTGAAGCTATGTGATCGGGAAGGGGTGGACTCCACCATTGGTTTGGACAATGCTGCAGATCAATTAG : GTGTCGAGAGGCGTCGCATTTATGATATTGTCAATATTTTGGAAAGTGTTGGG : GTTTTGTCAAGAAAAGCTAAGAATCAGTATAGATGGAATGGGTATAATGCAATTTCTAAGGCTGTAGATTTGCTTAAG : AAAGAAGGACTAAAAGATCTGTCCACTGTCTCCTCCACTTGCCACAATGTTTCAAAT : GTCATAGCTTGTAACAATTCAGATGTTAAGGAAAAAGGAGAAGGCAAGACTGCTGGATCACATAAAATTG : ACAACCGGAAGGAGAAGTCTTTGATGATTCTAGCACAAAATTTTGTAAAGCTTTTCCACTGTTCTGAT : GTTGACTTGATATCTCTTGACAAGGCTGCATCAGCTTTGCTTGGTGATGTCCACGATCCGATGGCTATGAAGA : CAAAGACCAGACGCTTGTATGATATTGCAAATGTTTTTGTGTCCATGAATCTTATTGAGAAG : ATACGCAGCCCAGATAATGGAAAACCAGTGTTTAGGTGGATAGCCTGGAAAGAAAATCTGAGGAGTGGGTCCCTTGCATCTGCTAAATCAGATGATTCAACAAGGAGAACTTTTGGGGCAGAGATCACGAATACAACTCCCAAACGATACAGGGATGATTCTTCATCTGATGTAATGTCAAATGGG</gDNA_template>
            <first_frame> S  L  S  S  K  L  E  R  F  I  S  N  F  P  *  G  S  S  L  I  A  F  N  F  R  *  Q  R  N  L  A  M  S  S  S  L  H  T  E  D  S  Q  W  K  N  P  S  I  Y  S  R  K  D  K  S  L  G  L  L  C  S  K :   *  K  C  V  E  E  A  D  D  M  P  *  K  H  K  N  P   : I  S  *  S  Y  V  I  G  K  G  W  T  P  P  L  V  W  T  M  L  Q  I  N  *  :  V  S  R  G  V  A  F  M  I  L  S  I  F  W  K  V  L  G :   F  C  Q  E  K  L  R  I  S  I  D  G  M  G  I  M  Q  F  L  R  L  *  I  C  L  R :   K  K  D  *  K  I  C  P  L  S  P  P  L  A  T  M  F  Q  M :   S  *  L  V  T  I  Q  M  L  R  K  K  E  K  A  R  L  L  D  H  I  K  L  :  T  T  G  R  R  S  L  *  *  F  *  H  K  I  L  *  S  F  S  T  V  L  M :   L  T  *  Y  L  L  T  R  L  H  Q  L  C  L  V  M  S  T  I  R  W  L  *  R  :  Q  R  P  D  A  C  M  I  L  Q  M  F  L  C  P  *  I  L  L  R  R :   Y  A  A  Q  I  M  E  N  Q  C  L  G  G  *  P  G  K  K  I  *  G  V  G  P  L  H  L  L  N  Q  M  I  Q  Q  G  E  L  L  G  Q  R  S  R  I  Q  L  P  N  D  T  G  M  I  L  H  L  M  *  C  Q  M   </first_frame>
            <second_frame>  L  F  L  Q  S  L  S  G  L  S  R  I  F  R  R  V  L  L  *  S  L  S  T  F  D  N  R  E  T  *  Q  C  H  R  H  S  I  L  K  I  L  N  G  K  T  L  A  F  I  A  A  R  T  N  R  S  V  F  F  A  P   : S  R  N  V  W  R  K  L  M  I  C  L  K  N  I  K  T  Q  :  F  L  E  A  M  *  S  G  R  G  G  L  H  H  W  F  G  Q  C  C  R  S  I  R :   C  R  E  A  S  H  L  *  Y  C  Q  Y  F  G  K  C  W   : G  F  V  K  K  S  *  E  S  V  *  M  E  W  V  *  C  N  F  *  G  C  R  F  A  *   : E  R  R  T  K  R  S  V  H  C  L  L  H  L  P  Q  C  F  K   : C  H  S  L  *  Q  F  R  C  *  G  K  R  R  R  Q  D  C  W  I  T  *  N  * :   Q  P  E  G  E  V  F  D  D  S  S  T  K  F  C  K  A  F  P  L  F  *   : C  *  L  D  I  S  *  Q  G  C  I  S  F  A  W  *  C  P  R  S  D  G  Y  E  D :   K  D  Q  T  L  V  *  Y  C  K  C  F  C  V  H  E  S  Y  *  E   : D  T  Q  P  R  *  W  K  T  S  V  *  V  D  S  L  E  R  K  S  E  E  W  V  P  C  I  C  *  I  R  *  F  N  K  E  N  F  W  G  R  D  H  E  Y  N  S  Q  T  I  Q  G  *  F  F  I  *  C  N  V  K  W  </second_frame>
            <third_frame>   S  F  F  K  A  *  A  V  Y  L  E  F  S  V  G  F  F  S  D  R  F  Q  L  S  I  T  E  K  P  S  N  V  I  V  T  P  Y  *  R  F  S  M  E  K  P  *  H  L  *  P  Q  G  Q  I  A  R  S  S  L  L  Q  :  V  E  M  C  G  G  S  *  *  Y  A  L  K  T  *  K  P  N :   F  L  K  L  C  D  R  E  G  V  D  S  T  I  G  L  D  N  A  A  D  Q  L   : G  V  E  R  R  R  I  Y  D  I  V  N  I  L  E  S  V  G  :  V  L  S  R  K  A  K  N  Q  Y  R  W  N  G  Y  N  A  I  S  K  A  V  D  L  L  K  :  K  E  G  L  K  D  L  S  T  V  S  S  T  C  H  N  V  S  N  :  V  I  A  C  N  N  S  D  V  K  E  K  G  E  G  K  T  A  G  S  H  K  I   : D  N  R  K  E  K  S  L  M  I  L  A  Q  N  F  V  K  L  F  H  C  S  D  :  V  D  L  I  S  L  D  K  A  A  S  A  L  L  G  D  V  H  D  P  M  A  M  K   : T  K  T  R  R  L  Y  D  I  A  N  V  F  V  S  M  N  L  I  E  K  :  I  R  S  P  D  N  G  K  P  V  F  R  W  I  A  W  K  E  N  L  R  S  G  S  L  A  S  A  K  S  D  D  S  T  R  R  T  F  G  A  E  I  T  N  T  T  P  K  R  Y  R  D  D  S  S  S  D  V  M  S  N  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="+"/>
                <serials PGL_serial="27" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="122525" stop="122532"/>
                    <exon start="122609" stop="122679"/>
                    <exon start="122795" stop="122847"/>
                    <exon start="122919" stop="122996"/>
                    <exon start="123071" stop="123127"/>
                    <exon start="123291" stop="123360"/>
                    <exon start="123513" stop="123580"/>
                    <exon start="123651" stop="123723"/>
                    <exon start="123812" stop="123873"/>
                    <exon start="123967" stop="124152"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>726</number_coding_nucleotides>
                  <number_encoded_amino_acids>242</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KPNFLKLCDREGVDSTIGLDNAADQLGVERRRIYDIVNILESVGVLSRKAKNQYRWNGYNAISKAVDLLKKEGLKDLSTVSSTCHNVSNVIACNNSDVKEKGEGKTAGSHKIDNRKEKSLMILAQNFVKLFHCSDVDLISLDKAASALLGDVHDPMAMKTKTRRLYDIANVFVSMNLIEKIRSPDNGKPVFRWIAWKENLRSGSLASAKSDDSTRRTFGAEITNTTPKRYRDDSSSDVMSNG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="120663" e_stop="120868"/>
            <exon e_start="122609" e_stop="122679"/>
            <exon e_start="122795" e_stop="122847"/>
            <exon e_start="122919" e_stop="122996"/>
            <exon e_start="123071" e_stop="123127"/>
            <exon e_start="123291" e_stop="123360"/>
            <exon e_start="123513" e_stop="123580"/>
            <exon e_start="123651" e_stop="123723"/>
            <exon e_start="123812" e_stop="123873"/>
            <exon e_start="123967" e_stop="124152"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.404" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.398" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.928" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.840" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.744" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="120663" e_stop="120868" e_length="206"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.976">
            <gDNA_intron_boundary i_start="120869" i_stop="122608" i_length="1740"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="122609" e_stop="122679" e_length="71"/>
          </exon>
          <intron i_serial="2" don_prob="0.404" acc_prob="0.967">
            <gDNA_intron_boundary i_start="122680" i_stop="122794" i_length="115"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="122795" e_stop="122847" e_length="53"/>
          </exon>
          <intron i_serial="3" don_prob="0.981" acc_prob="0.949">
            <gDNA_intron_boundary i_start="122848" i_stop="122918" i_length="71"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="122919" e_stop="122996" e_length="78"/>
          </exon>
          <intron i_serial="4" don_prob="0.398" acc_prob="0.978">
            <gDNA_intron_boundary i_start="122997" i_stop="123070" i_length="74"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="123071" e_stop="123127" e_length="57"/>
          </exon>
          <intron i_serial="5" don_prob="0.928" acc_prob="0.962">
            <gDNA_intron_boundary i_start="123128" i_stop="123290" i_length="163"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="123291" e_stop="123360" e_length="70"/>
          </exon>
          <intron i_serial="6" don_prob="0.980" acc_prob="0.840">
            <gDNA_intron_boundary i_start="123361" i_stop="123512" i_length="152"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="123513" e_stop="123580" e_length="68"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="123581" i_stop="123650" i_length="70"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="123651" e_stop="123723" e_length="73"/>
          </exon>
          <intron i_serial="8" don_prob="0.990" acc_prob="0.971">
            <gDNA_intron_boundary i_start="123724" i_stop="123811" i_length="88"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="123812" e_stop="123873" e_length="62"/>
          </exon>
          <intron i_serial="9" don_prob="0.744" acc_prob="0.994">
            <gDNA_intron_boundary i_start="123874" i_stop="123966" i_length="93"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="123967" e_stop="124152" e_length="186"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120663" stop="120868"/>
              <exon start="122609" stop="122679"/>
              <exon start="122795" stop="122847"/>
              <exon start="122919" stop="122996"/>
              <exon start="123071" stop="123127"/>
              <exon start="123291" stop="123356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122941" stop="122996"/>
              <exon start="123071" stop="123127"/>
              <exon start="123291" stop="123360"/>
              <exon start="123513" stop="123580"/>
              <exon start="123651" stop="123723"/>
              <exon start="123812" stop="123873"/>
              <exon start="123967" stop="124152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122941" stop="122996"/>
              <exon start="123071" stop="123127"/>
              <exon start="123291" stop="123360"/>
              <exon start="123513" stop="123580"/>
              <exon start="123651" stop="123723"/>
              <exon start="123812" stop="123873"/>
              <exon start="123967" stop="124150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122941" stop="122996"/>
              <exon start="123071" stop="123127"/>
              <exon start="123291" stop="123360"/>
              <exon start="123513" stop="123580"/>
              <exon start="123651" stop="123699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122941" stop="122996"/>
              <exon start="123071" stop="123127"/>
              <exon start="123291" stop="123360"/>
              <exon start="123513" stop="123580"/>
              <exon start="123651" stop="123690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239519" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="27" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCAATTTCATCTATTTCCCTCTCTCTTTCTTCAAAGCTTGAGCGGTTTATCTCGAATTTTCCGTAGGGTTCTTCTCTGATCGCTTTCAACTTTCGATAACAGAGAAACCTAGCAATGTCATCGTCACTCCATACTGAAGATTCTCAATGGAAAAACCCTAGCATTTATAGCCGCAAGGACAAATCGCTCGGTCTTCTTTGCTCCAA : TTTCTTGAAGCTATGTGATCGGGAAGGGGTGGACTCCACCATTGGTTTGGACAATGCTGCAGATCAATTAG : GTGTCGAGAGGCGTCGCATTTATGATATTGTCAATATTTTGGAAAGTGTTGGG : GTTTTGTCAAGAAAAGCTAAGAATCAGTATAGATGGAATGGGTATAATGCAATTTCTAAGGCTGTAGATTTGCTTAAG : AAAGAAGGACTAAAAGATCTGTCCACTGTCTCCTCCACTTGCCACAATGTTTCAAAT : GTCATAGCTTGTAACAATTCAGATGTTAAGGAAAAAGGAGAAGGCAAGACTGCTGGATCACATAAAATTG : ACAACCGGAAGGAGAAGTCTTTGATGATTCTAGCACAAAATTTTGTAAAGCTTTTCCACTGTTCTGAT : GTTGACTTGATATCTCTTGACAAGGCTGCATCAGCTTTGCTTGGTGATGTCCACGATCCGATGGCTATGAAGA : CAAAGACCAGACGCTTGTATGATATTGCAAATGTTTTTGTGTCCATGAATCTTATTGAGAAG : ATACGCAGCCCAGATAATGGAAAACCAGTGTTTAGGTGGATAGCCTGGAAAGAAAATCTGAGGAGTGGGTCCCTTGCATCTGCTAAATCAGATGATTCAACAAGGAGAACTTTTGGGGCAGAGATCACGAATACAACTCCCAAACGATACAGGGATGATTCTTCATCTGATGTAATGTCAAATGGG</gDNA_template>
            <first_frame> P  I  S  S  I  S  L  S  L  S  S  K  L  E  R  F  I  S  N  F  P  *  G  S  S  L  I  A  F  N  F  R  *  Q  R  N  L  A  M  S  S  S  L  H  T  E  D  S  Q  W  K  N  P  S  I  Y  S  R  K  D  K  S  L  G  L  L  C  S  N :   F  L  K  L  C  D  R  E  G  V  D  S  T  I  G  L  D  N  A  A  D  Q  L   : G  V  E  R  R  R  I  Y  D  I  V  N  I  L  E  S  V  G  :  V  L  S  R  K  A  K  N  Q  Y  R  W  N  G  Y  N  A  I  S  K  A  V  D  L  L  K  :  K  E  G  L  K  D  L  S  T  V  S  S  T  C  H  N  V  S  N  :  V  I  A  C  N  N  S  D  V  K  E  K  G  E  G  K  T  A  G  S  H  K  I   : D  N  R  K  E  K  S  L  M  I  L  A  Q  N  F  V  K  L  F  H  C  S  D  :  V  D  L  I  S  L  D  K  A  A  S  A  L  L  G  D  V  H  D  P  M  A  M  K   : T  K  T  R  R  L  Y  D  I  A  N  V  F  V  S  M  N  L  I  E  K  :  I  R  S  P  D  N  G  K  P  V  F  R  W  I  A  W  K  E  N  L  R  S  G  S  L  A  S  A  K  S  D  D  S  T  R  R  T  F  G  A  E  I  T  N  T  T  P  K  R  Y  R  D  D  S  S  S  D  V  M  S  N  G </first_frame>
            <second_frame>  Q  F  H  L  F  P  S  L  F  L  Q  S  L  S  G  L  S  R  I  F  R  R  V  L  L  *  S  L  S  T  F  D  N  R  E  T  *  Q  C  H  R  H  S  I  L  K  I  L  N  G  K  T  L  A  F  I  A  A  R  T  N  R  S  V  F  F  A  P   : I  S  *  S  Y  V  I  G  K  G  W  T  P  P  L  V  W  T  M  L  Q  I  N  *  :  V  S  R  G  V  A  F  M  I  L  S  I  F  W  K  V  L  G :   F  C  Q  E  K  L  R  I  S  I  D  G  M  G  I  M  Q  F  L  R  L  *  I  C  L  R :   K  K  D  *  K  I  C  P  L  S  P  P  L  A  T  M  F  Q  M :   S  *  L  V  T  I  Q  M  L  R  K  K  E  K  A  R  L  L  D  H  I  K  L  :  T  T  G  R  R  S  L  *  *  F  *  H  K  I  L  *  S  F  S  T  V  L  M :   L  T  *  Y  L  L  T  R  L  H  Q  L  C  L  V  M  S  T  I  R  W  L  *  R  :  Q  R  P  D  A  C  M  I  L  Q  M  F  L  C  P  *  I  L  L  R  R :   Y  A  A  Q  I  M  E  N  Q  C  L  G  G  *  P  G  K  K  I  *  G  V  G  P  L  H  L  L  N  Q  M  I  Q  Q  G  E  L  L  G  Q  R  S  R  I  Q  L  P  N  D  T  G  M  I  L  H  L  M  *  C  Q  M   </second_frame>
            <third_frame>   N  F  I  Y  F  P  L  S  F  F  K  A  *  A  V  Y  L  E  F  S  V  G  F  F  S  D  R  F  Q  L  S  I  T  E  K  P  S  N  V  I  V  T  P  Y  *  R  F  S  M  E  K  P  *  H  L  *  P  Q  G  Q  I  A  R  S  S  L  L  Q  :  F  L  E  A  M  *  S  G  R  G  G  L  H  H  W  F  G  Q  C  C  R  S  I  R :   C  R  E  A  S  H  L  *  Y  C  Q  Y  F  G  K  C  W   : G  F  V  K  K  S  *  E  S  V  *  M  E  W  V  *  C  N  F  *  G  C  R  F  A  *   : E  R  R  T  K  R  S  V  H  C  L  L  H  L  P  Q  C  F  K   : C  H  S  L  *  Q  F  R  C  *  G  K  R  R  R  Q  D  C  W  I  T  *  N  * :   Q  P  E  G  E  V  F  D  D  S  S  T  K  F  C  K  A  F  P  L  F  *   : C  *  L  D  I  S  *  Q  G  C  I  S  F  A  W  *  C  P  R  S  D  G  Y  E  D :   K  D  Q  T  L  V  *  Y  C  K  C  F  C  V  H  E  S  Y  *  E   : D  T  Q  P  R  *  W  K  T  S  V  *  V  D  S  L  E  R  K  S  E  E  W  V  P  C  I  C  *  I  R  *  F  N  K  E  N  F  W  G  R  D  H  E  Y  N  S  Q  T  I  Q  G  *  F  F  I  *  C  N  V  K  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="+"/>
                <serials PGL_serial="27" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120762" stop="120868"/>
                    <exon start="122609" stop="122679"/>
                    <exon start="122795" stop="122847"/>
                    <exon start="122919" stop="122996"/>
                    <exon start="123071" stop="123127"/>
                    <exon start="123291" stop="123360"/>
                    <exon start="123513" stop="123580"/>
                    <exon start="123651" stop="123723"/>
                    <exon start="123812" stop="123873"/>
                    <exon start="123967" stop="124152"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>825</number_coding_nucleotides>
                  <number_encoded_amino_acids>275</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QRNLAMSSSLHTEDSQWKNPSIYSRKDKSLGLLCSNFLKLCDREGVDSTIGLDNAADQLGVERRRIYDIVNILESVGVLSRKAKNQYRWNGYNAISKAVDLLKKEGLKDLSTVSSTCHNVSNVIACNNSDVKEKGEGKTAGSHKIDNRKEKSLMILAQNFVKLFHCSDVDLISLDKAASALLGDVHDPMAMKTKTRRLYDIANVFVSMNLIEKIRSPDNGKPVFRWIAWKENLRSGSLASAKSDDSTRRTFGAEITNTTPKRYRDDSSSDVMSNG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="28" PGL_strand="+" PGL_start="124925" PGL_stop="125501"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="124925" e_stop="125501"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="124925" e_stop="125501" e_length="577"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124925" stop="125501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E618022" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="28" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGCAAATGAGCTTTTTGCTCATTATGTTGAGGCATGGGAGTCGTGGCAGGTTGAAGCTGCCAATGAGCTGCACAAACAACATGAACATTAATGTCATCTTGGATCTTTTTTTATTTCAGATGGTAGCAAACACGTTCAACAAGGACATCTCTGATGCTGTTACTCTCACTAGAGAGATGGCGGTAATTGGTTGAATATCTCCTGCATCATGTCAGTTAAGTGTGCGGCATATTATCAGTTTGTGATATCCAAGCCCTTTAGTAATATTCCGTGCCATTGCAGTTCCCAGTTCTATCCGATGAGTTTCGTCCACAAGTTCATGGGAGACGATCAATCTCTCCTACATGCTTGAATTTTTTTTTTATGAGCTTACTAGGGTTTTAAAAGGCAAATATCTGCTACAATTGATGGTTGTATCTGTGTTCCGGTTCCTTCACTCCTATTAAACCTCTTGAAGCTATCCCAAACTGAACTTCAATTTTATTGAGCTAAATTAATCGCATTGTATATATGATGCAGACATCTTACATCTTTGCTTGTCATCCCACTGTGGGGGAATGTAAATTAGAAATTGAA</gDNA_template>
            <first_frame> L  Q  M  S  F  L  L  I  M  L  R  H  G  S  R  G  R  L  K  L  P  M  S  C  T  N  N  M  N  I  N  V  I  L  D  L  F  L  F  Q  M  V  A  N  T  F  N  K  D  I  S  D  A  V  T  L  T  R  E  M  A  V  I  G  *  I  S  P  A  S  C  Q  L  S  V  R  H  I  I  S  L  *  Y  P  S  P  L  V  I  F  R  A  I  A  V  P  S  S  I  R  *  V  S  S  T  S  S  W  E  T  I  N  L  S  Y  M  L  E  F  F  F  Y  E  L  T  R  V  L  K  G  K  Y  L  L  Q  L  M  V  V  S  V  F  R  F  L  H  S  Y  *  T  S  *  S  Y  P  K  L  N  F  N  F  I  E  L  N  *  S  H  C  I  Y  D  A  D  I  L  H  L  C  L  S  S  H  C  G  G  M  *  I  R  N  *  </first_frame>
            <second_frame>  C  K  *  A  F  C  S  L  C  *  G  M  G  V  V  A  G  *  S  C  Q  *  A  A  Q  T  T  *  T  L  M  S  S  W  I  F  F  Y  F  R  W  *  Q  T  R  S  T  R  T  S  L  M  L  L  L  S  L  E  R  W  R  *  L  V  E  Y  L  L  H  H  V  S  *  V  C  G  I  L  S  V  C  D  I  Q  A  L  *  *  Y  S  V  P  L  Q  F  P  V  L  S  D  E  F  R  P  Q  V  H  G  R  R  S  I  S  P  T  C  L  N  F  F  F  M  S  L  L  G  F  *  K  A  N  I  C  Y  N  *  W  L  Y  L  C  S  G  S  F  T  P  I  K  P  L  E  A  I  P  N  *  T  S  I  L  L  S  *  I  N  R  I  V  Y  M  M  Q  T  S  Y  I  F  A  C  H  P  T  V  G  E  C  K  L  E  I  E </second_frame>
            <third_frame>   A  N  E  L  F  A  H  Y  V  E  A  W  E  S  W  Q  V  E  A  A  N  E  L  H  K  Q  H  E  H  *  C  H  L  G  S  F  F  I  S  D  G  S  K  H  V  Q  Q  G  H  L  *  C  C  Y  S  H  *  R  D  G  G  N  W  L  N  I  S  C  I  M  S  V  K  C  A  A  Y  Y  Q  F  V  I  S  K  P  F  S  N  I  P  C  H  C  S  S  Q  F  Y  P  M  S  F  V  H  K  F  M  G  D  D  Q  S  L  L  H  A  *  I  F  F  L  *  A  Y  *  G  F  K  R  Q  I  S  A  T  I  D  G  C  I  C  V  P  V  P  S  L  L  L  N  L  L  K  L  S  Q  T  E  L  Q  F  Y  *  A  K  L  I  A  L  Y  I  *  C  R  H  L  T  S  L  L  V  I  P  L  W  G  N  V  N  *  K  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="+"/>
                <serials PGL_serial="28" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="124925" stop="125119"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQMSFLLIMLRHGSRGRLKLPMSCTNNMNINVILDLFLFQMVANTFNKDISDAVTLTREMAVIG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="29" PGL_strand="-" PGL_start="135358" PGL_stop="133493"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="135358" e_stop="135268"/>
            <exon e_start="135079" e_stop="134991"/>
            <exon e_start="133851" e_stop="133493"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.978" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="135358" e_stop="135268" e_length="91"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="135267" i_stop="135080" i_length="188"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="135079" e_stop="134991" e_length="89"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.978">
            <gDNA_intron_boundary i_start="134990" i_stop="133852" i_length="1139"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="133851" e_stop="133493" e_length="359"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135358" stop="135268"/>
              <exon start="135079" stop="134991"/>
              <exon start="133851" stop="133494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135358" stop="135268"/>
              <exon start="135079" stop="134991"/>
              <exon start="133851" stop="133495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135358" stop="135268"/>
              <exon start="135079" stop="134991"/>
              <exon start="133851" stop="133505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135358" stop="135268"/>
              <exon start="135079" stop="134991"/>
              <exon start="133851" stop="133530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135355" stop="135268"/>
              <exon start="135079" stop="134991"/>
              <exon start="133851" stop="133495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421323" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135355" stop="135268"/>
              <exon start="135079" stop="134991"/>
              <exon start="133851" stop="133495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135355" stop="135268"/>
              <exon start="135079" stop="134991"/>
              <exon start="133851" stop="133495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135355" stop="135268"/>
              <exon start="135079" stop="134991"/>
              <exon start="133851" stop="133497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135355" stop="135268"/>
              <exon start="135079" stop="134991"/>
              <exon start="133851" stop="133505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422055" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135354" stop="135268"/>
              <exon start="135079" stop="134991"/>
              <exon start="133851" stop="133517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135354" stop="135268"/>
              <exon start="135079" stop="134991"/>
              <exon start="133851" stop="133527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135350" stop="135268"/>
              <exon start="135079" stop="134991"/>
              <exon start="133851" stop="133518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135349" stop="135268"/>
              <exon start="135079" stop="134991"/>
              <exon start="133851" stop="133493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135349" stop="135268"/>
              <exon start="135079" stop="134991"/>
              <exon start="133851" stop="133501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135348" stop="135268"/>
              <exon start="135079" stop="134991"/>
              <exon start="133851" stop="133573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135306" stop="135268"/>
              <exon start="135079" stop="134991"/>
              <exon start="133851" stop="133501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133827" stop="133501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133827" stop="133501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133827" stop="133501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133778" stop="133505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133754" stop="133505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234133" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="29" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAACAGTCTCAAAAAGATCGTAAAGTTTGCATGTTCTTTCCCCCGTTTTTCTATGGCTTCTTCCACCATTAATCGATGGCTGAGGCCTGAG : GTGTATCCACTTTTTGCAGCCGTAGGCGTTGCTGTAGGGATCTGTGGAATGCAATTGGTTCGTAATATCTGCACCAACCCTGAAGTCAG : GGTGACAAAGGAAAACAGGGCAGCAGGAGTGCTGGATAATTTTTCAGAAGGGGAGAAATATTCAGAGCATGCTCTAAGGAAGTTTGTTCGAAACAAGTCTCCGGAGATTATGCCATCAATCAACGGCTTCTTCAGTAATCCAAACTAATGTCCTAGTCAAGTTTAATTTGGATTAACACCATTATTCTTTGTCTTCTTTTCCATTGAATGAGATAGACATGAAATGCATTTTTCTGGCCCTAAAAGATATTTGAAAGAAACTTGAATAAATGTAATCAGAACCACAAGTTCCCCTCTCTTTTGACAGGGCACATCTTTTCATATGATATTGAACTGTTGTTTTCCGGATACGTGAAGGT</gDNA_template>
            <first_frame> Q  Q  S  Q  K  D  R  K  V  C  M  F  F  P  P  F  F  Y  G  F  F  H  H  *  S  M  A  E  A  *   : G  V  S  T  F  C  S  R  R  R  C  C  R  D  L  W  N  A  I  G  S  *  Y  L  H  Q  P  *  S  Q  :  G  D  K  G  K  Q  G  S  R  S  A  G  *  F  F  R  R  G  E  I  F  R  A  C  S  K  E  V  C  S  K  Q  V  S  G  D  Y  A  I  N  Q  R  L  L  Q  *  S  K  L  M  S  *  S  S  L  I  W  I  N  T  I  I  L  C  L  L  F  H  *  M  R  *  T  *  N  A  F  F  W  P  *  K  I  F  E  R  N  L  N  K  C  N  Q  N  H  K  F  P  S  L  L  T  G  H  I  F  S  Y  D  I  E  L  L  F  S  G  Y  V  K   </first_frame>
            <second_frame>  N  S  L  K  K  I  V  K  F  A  C  S  F  P  R  F  S  M  A  S  S  T  I  N  R  W  L  R  P  E  :  V  Y  P  L  F  A  A  V  G  V  A  V  G  I  C  G  M  Q  L  V  R  N  I  C  T  N  P  E  V  R :   V  T  K  E  N  R  A  A  G  V  L  D  N  F  S  E  G  E  K  Y  S  E  H  A  L  R  K  F  V  R  N  K  S  P  E  I  M  P  S  I  N  G  F  F  S  N  P  N  *  C  P  S  Q  V  *  F  G  L  T  P  L  F  F  V  F  F  S  I  E  *  D  R  H  E  M  H  F  S  G  P  K  R  Y  L  K  E  T  *  I  N  V  I  R  T  T  S  S  P  L  F  *  Q  G  T  S  F  H  M  I  L  N  C  C  F  P  D  T  *  R  </second_frame>
            <third_frame>   T  V  S  K  R  S  *  S  L  H  V  L  S  P  V  F  L  W  L  L  P  P  L  I  D  G  *  G  L  R :   C  I  H  F  L  Q  P  *  A  L  L  *  G  S  V  E  C  N  W  F  V  I  S  A  P  T  L  K  S   : G  *  Q  R  K  T  G  Q  Q  E  C  W  I  I  F  Q  K  G  R  N  I  Q  S  M  L  *  G  S  L  F  E  T  S  L  R  R  L  C  H  Q  S  T  A  S  S  V  I  Q  T  N  V  L  V  K  F  N  L  D  *  H  H  Y  S  L  S  S  F  P  L  N  E  I  D  M  K  C  I  F  L  A  L  K  D  I  *  K  K  L  E  *  M  *  S  E  P  Q  V  P  L  S  F  D  R  A  H  L  F  I  *  Y  *  T  V  V  F  R  I  R  E  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="-"/>
                <serials PGL_serial="29" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="135357" stop="135268"/>
                    <exon start="135079" stop="134991"/>
                    <exon start="133851" stop="133704"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>324</number_coding_nucleotides>
                  <number_encoded_amino_acids>108</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSLKKIVKFACSFPRFSMASSTINRWLRPEVYPLFAAVGVAVGICGMQLVRNICTNPEVRVTKENRAAGVLDNFSEGEKYSEHALRKFVRNKSPEIMPSINGFFSNPN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="30" PGL_strand="+" PGL_start="140006" PGL_stop="141082"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="140006" e_stop="140580"/>
            <exon e_start="140705" e_stop="140972"/>
            <exon e_start="141078" e_stop="141082"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.998"/>
          <exon-intron don_prob="0.999" acc_prob="0.891" e_score="1.000"/>
          <exon-only e_score="0.600"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="140006" e_stop="140580" e_length="575"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="140581" i_stop="140704" i_length="124"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="140705" e_stop="140972" e_length="268"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.891">
            <gDNA_intron_boundary i_start="140973" i_stop="141077" i_length="105"/>
          </intron>
          <exon e_serial="3" e_score="0.600">
            <gDNA_exon_boundary e_start="141078" e_stop="141082" e_length="5"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140006" stop="140580"/>
              <exon start="140705" stop="140946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140014" stop="140580"/>
              <exon start="140705" stop="140944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719712" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140027" stop="140305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140030" stop="140580"/>
              <exon start="140705" stop="140773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140030" stop="140580"/>
              <exon start="140705" stop="140749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E562048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140031" stop="140580"/>
              <exon start="140705" stop="140823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140031" stop="140580"/>
              <exon start="140705" stop="140732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140031" stop="140578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140031" stop="140454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140031" stop="140452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140031" stop="140317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140032" stop="140509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278855" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140033" stop="140550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140036" stop="140491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140037" stop="140580"/>
              <exon start="140705" stop="140743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140037" stop="140580"/>
              <exon start="140705" stop="140724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E588642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140037" stop="140434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140039" stop="140580"/>
              <exon start="140705" stop="140924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466022" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140049" stop="140580"/>
              <exon start="140705" stop="140972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140050" stop="140580"/>
              <exon start="140705" stop="140765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140050" stop="140549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E436845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140067" stop="140531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E562503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140075" stop="140269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E563518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140087" stop="140580"/>
              <exon start="140705" stop="140871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140100" stop="140580"/>
              <exon start="140705" stop="140906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140109" stop="140503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140110" stop="140580"/>
              <exon start="140705" stop="140972"/>
              <exon start="141078" stop="141082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140110" stop="140580"/>
              <exon start="140705" stop="140972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140196" stop="140580"/>
              <exon start="140705" stop="140841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140292" stop="140580"/>
              <exon start="140705" stop="140867"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277390" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="30" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATGAAATGAAAGATGAGGGGGAGAGAGAATCGAAGGGAGACGTGAGAAATTCGCCGGAGGCATCGCAAGCCACACAATAAACTAGACGAAGGAGAAAAGAAGAAGAAGAATCTCCGTCTTTAATGGCTGCCGCCTCAGCTAGGGTTTTACTCGCATCTCGTCTAGCAGACCTATCACTTAAGCCTCATCAACATCCTCCTCACCTACCCTCTCCTTTTACCCACCACCTCCTCATCCGTCCCTTACTTCCTTCTCTTTCCGCTTCCACCAGGCGGCGTACGTCCGTTAACTGCCTTATTTCCGGCGTAGACGGCGGCGGTGTTTCGGACGACTTTGTTTCCACCAGGAAATCCGGTTTCGGCAGTGAATTCTCTGTTATTGCCAATATGCTCAAGCGAATTGAACCGTTGGACACTTCTGTTATATCTAAAGGCGTTTCTGATTCAGCTAAGGACTCAATGAAGCAGACCATTTCTACTATGTTAGGCTTGCTCCCTTCAGATCAATTCTCAATCACTGTTCGGTTTTCCAAACACGCTCTCGATCGCCTCATTGTTTCTTCTATCATTACCGG : GTATACGTTGTGGAATGCGGAGTACAGGATATCCTTGATGAGGAATTTTGATATCCCATCAGATAATTTGAAAGGCTTCAACTCAACGGAAGAGGATGTGAACTCTGGCTCAAAGAGCGAGGGGATAGAGGGGGGAGAACGCGGAGTTGGTGTAAATATGTCTTCGGCGGTTTCAGAGAAAATGGATATTCAAGCTCTTGGGAATTTATCTCCGGAAGCTCTGAAATATGTTCAACAATTAGAAGAAGAACTCTCATCAATTAAGCAG : GATAT</gDNA_template>
            <first_frame> D  E  M  K  D  E  G  E  R  E  S  K  G  D  V  R  N  S  P  E  A  S  Q  A  T  Q  *  T  R  R  R  R  K  E  E  E  E  S  P  S  L  M  A  A  A  S  A  R  V  L  L  A  S  R  L  A  D  L  S  L  K  P  H  Q  H  P  P  H  L  P  S  P  F  T  H  H  L  L  I  R  P  L  L  P  S  L  S  A  S  T  R  R  R  T  S  V  N  C  L  I  S  G  V  D  G  G  G  V  S  D  D  F  V  S  T  R  K  S  G  F  G  S  E  F  S  V  I  A  N  M  L  K  R  I  E  P  L  D  T  S  V  I  S  K  G  V  S  D  S  A  K  D  S  M  K  Q  T  I  S  T  M  L  G  L  L  P  S  D  Q  F  S  I  T  V  R  F  S  K  H  A  L  D  R  L  I  V  S  S  I  I  T  G :   Y  T  L  W  N  A  E  Y  R  I  S  L  M  R  N  F  D  I  P  S  D  N  L  K  G  F  N  S  T  E  E  D  V  N  S  G  S  K  S  E  G  I  E  G  G  E  R  G  V  G  V  N  M  S  S  A  V  S  E  K  M  D  I  Q  A  L  G  N  L  S  P  E  A  L  K  Y  V  Q  Q  L  E  E  E  L  S  S  I  K  Q  :  D   </first_frame>
            <second_frame>  M  K  *  K  M  R  G  R  E  N  R  R  E  T  *  E  I  R  R  R  H  R  K  P  H  N  K  L  D  E  G  E  K  K  K  K  N  L  R  L  *  W  L  P  P  Q  L  G  F  Y  S  H  L  V  *  Q  T  Y  H  L  S  L  I  N  I  L  L  T  Y  P  L  L  L  P  T  T  S  S  S  V  P  Y  F  L  L  F  P  L  P  P  G  G  V  R  P  L  T  A  L  F  P  A  *  T  A  A  V  F  R  T  T  L  F  P  P  G  N  P  V  S  A  V  N  S  L  L  L  P  I  C  S  S  E  L  N  R  W  T  L  L  L  Y  L  K  A  F  L  I  Q  L  R  T  Q  *  S  R  P  F  L  L  C  *  A  C  S  L  Q  I  N  S  Q  S  L  F  G  F  P  N  T  L  S  I  A  S  L  F  L  L  S  L  P   : G  I  R  C  G  M  R  S  T  G  Y  P  *  *  G  I  L  I  S  H  Q  I  I  *  K  A  S  T  Q  R  K  R  M  *  T  L  A  Q  R  A  R  G  *  R  G  E  N  A  E  L  V  *  I  C  L  R  R  F  Q  R  K  W  I  F  K  L  L  G  I  Y  L  R  K  L  *  N  M  F  N  N  *  K  K  N  S  H  Q  L  S  R :   I  </second_frame>
            <third_frame>   *  N  E  R  *  G  G  E  R  I  E  G  R  R  E  K  F  A  G  G  I  A  S  H  T  I  N  *  T  K  E  K  R  R  R  R  I  S  V  F  N  G  C  R  L  S  *  G  F  T  R  I  S  S  S  R  P  I  T  *  A  S  S  T  S  S  S  P  T  L  S  F  Y  P  P  P  P  H  P  S  L  T  S  F  S  F  R  F  H  Q  A  A  Y  V  R  *  L  P  Y  F  R  R  R  R  R  R  C  F  G  R  L  C  F  H  Q  E  I  R  F  R  Q  *  I  L  C  Y  C  Q  Y  A  Q  A  N  *  T  V  G  H  F  C  Y  I  *  R  R  F  *  F  S  *  G  L  N  E  A  D  H  F  Y  Y  V  R  L  A  P  F  R  S  I  L  N  H  C  S  V  F  Q  T  R  S  R  S  P  H  C  F  F  Y  H  Y  R  :  V  Y  V  V  E  C  G  V  Q  D  I  L  D  E  E  F  *  Y  P  I  R  *  F  E  R  L  Q  L  N  G  R  G  C  E  L  W  L  K  E  R  G  D  R  G  G  R  T  R  S  W  C  K  Y  V  F  G  G  F  R  E  N  G  Y  S  S  S  W  E  F  I  S  G  S  S  E  I  C  S  T  I  R  R  R  T  L  I  N  *  A   : G  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="+"/>
                <serials PGL_serial="30" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="140087" stop="140580"/>
                    <exon start="140705" stop="140972"/>
                    <exon start="141078" stop="141080"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>765</number_coding_nucleotides>
                  <number_encoded_amino_acids>255</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TRRRRKEEEESPSLMAAASARVLLASRLADLSLKPHQHPPHLPSPFTHHLLIRPLLPSLSASTRRRTSVNCLISGVDGGGVSDDFVSTRKSGFGSEFSVIANMLKRIEPLDTSVISKGVSDSAKDSMKQTISTMLGLLPSDQFSITVRFSKHALDRLIVSSIITGYTLWNAEYRISLMRNFDIPSDNLKGFNSTEEDVNSGSKSEGIEGGERGVGVNMSSAVSEKMDIQALGNLSPEALKYVQQLEEELSSIKQD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="140027" e_stop="140844"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="140027" e_stop="140844" e_length="818"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140027" stop="140305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140031" stop="140578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140031" stop="140454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140031" stop="140452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140031" stop="140317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140032" stop="140509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278855" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140033" stop="140550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140036" stop="140491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140037" stop="140434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140050" stop="140549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E436845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140067" stop="140531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E562503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140075" stop="140269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E563518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140109" stop="140503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140280" stop="140844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253372" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="30" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGAGAGAATCGAAGGGAGACGTGAGAAATTCGCCGGAGGCATCGCAAGCCACACAATAAACTAGACGAAGGAGAAAAGAAGAAGAAGAATCTCCGTCTTTAATGGCTGCCGCCTCAGCTAGGGTTTTACTCGCATCTCGTCTAGCAGACCTATCACTTAAGCCTCATCAACATCCTCCTCACCTACCCTCTCCTTTTACCCACCACCTCCTCATCCGTCCCTTACTTCCTTCTCTTTCCGCTTCCACCAGGCGGCGTACGTCCGTTAACTGCCTTATTTCCGGCGTAGACGGCGGCGGTGTTTCGGACGACTTTGTTTCCACCAGGAAATCCGGTTTCGGCAGTGAATTCTCTGTTATTGCCAATATGCTCAAGCGAATTGAACCGTTGGACACTTCTGTTATATCTAAAGGCGTTTCTGATTCAGCTAAGGACTCAATGAAGCAGACCATTTCTACTATGTTAGGCTTGCTCCCTTCAGATCAATTCTCAATCACTGTTCGGTTTTCCAAACACGCTCTCGATCGCCTCATTGTTTCTTCTATCATTACCGGGTACCTTATCTCTTCATTTTCATATATGCACAAAGTTGAAAATAGTGATTGTTAATTTGTTAAAGTTGTGGATCAATCTGAATAAGTTATGGTGTATTCGATTGGTGTTGATTTGTGGTGGTAGGTATACGTTGTGGAATGCGGAGTACAGGATATCCTTGATGAGGAATTTTGATATCCCATCAGATAATTTGAAAGGCTTCAACTCAACGGAAGAGGATGTGAACTCTGGCTCAAAGAGCGAGGGGATAGAGGGGGGAGAAC</gDNA_template>
            <first_frame> E  R  E  S  K  G  D  V  R  N  S  P  E  A  S  Q  A  T  Q  *  T  R  R  R  R  K  E  E  E  E  S  P  S  L  M  A  A  A  S  A  R  V  L  L  A  S  R  L  A  D  L  S  L  K  P  H  Q  H  P  P  H  L  P  S  P  F  T  H  H  L  L  I  R  P  L  L  P  S  L  S  A  S  T  R  R  R  T  S  V  N  C  L  I  S  G  V  D  G  G  G  V  S  D  D  F  V  S  T  R  K  S  G  F  G  S  E  F  S  V  I  A  N  M  L  K  R  I  E  P  L  D  T  S  V  I  S  K  G  V  S  D  S  A  K  D  S  M  K  Q  T  I  S  T  M  L  G  L  L  P  S  D  Q  F  S  I  T  V  R  F  S  K  H  A  L  D  R  L  I  V  S  S  I  I  T  G  Y  L  I  S  S  F  S  Y  M  H  K  V  E  N  S  D  C  *  F  V  K  V  V  D  Q  S  E  *  V  M  V  Y  S  I  G  V  D  L  W  W  *  V  Y  V  V  E  C  G  V  Q  D  I  L  D  E  E  F  *  Y  P  I  R  *  F  E  R  L  Q  L  N  G  R  G  C  E  L  W  L  K  E  R  G  D  R  G  G  R   </first_frame>
            <second_frame>  R  E  N  R  R  E  T  *  E  I  R  R  R  H  R  K  P  H  N  K  L  D  E  G  E  K  K  K  K  N  L  R  L  *  W  L  P  P  Q  L  G  F  Y  S  H  L  V  *  Q  T  Y  H  L  S  L  I  N  I  L  L  T  Y  P  L  L  L  P  T  T  S  S  S  V  P  Y  F  L  L  F  P  L  P  P  G  G  V  R  P  L  T  A  L  F  P  A  *  T  A  A  V  F  R  T  T  L  F  P  P  G  N  P  V  S  A  V  N  S  L  L  L  P  I  C  S  S  E  L  N  R  W  T  L  L  L  Y  L  K  A  F  L  I  Q  L  R  T  Q  *  S  R  P  F  L  L  C  *  A  C  S  L  Q  I  N  S  Q  S  L  F  G  F  P  N  T  L  S  I  A  S  L  F  L  L  S  L  P  G  T  L  S  L  H  F  H  I  C  T  K  L  K  I  V  I  V  N  L  L  K  L  W  I  N  L  N  K  L  W  C  I  R  L  V  L  I  C  G  G  R  Y  T  L  W  N  A  E  Y  R  I  S  L  M  R  N  F  D  I  P  S  D  N  L  K  G  F  N  S  T  E  E  D  V  N  S  G  S  K  S  E  G  I  E  G  G  E  </second_frame>
            <third_frame>   E  R  I  E  G  R  R  E  K  F  A  G  G  I  A  S  H  T  I  N  *  T  K  E  K  R  R  R  R  I  S  V  F  N  G  C  R  L  S  *  G  F  T  R  I  S  S  S  R  P  I  T  *  A  S  S  T  S  S  S  P  T  L  S  F  Y  P  P  P  P  H  P  S  L  T  S  F  S  F  R  F  H  Q  A  A  Y  V  R  *  L  P  Y  F  R  R  R  R  R  R  C  F  G  R  L  C  F  H  Q  E  I  R  F  R  Q  *  I  L  C  Y  C  Q  Y  A  Q  A  N  *  T  V  G  H  F  C  Y  I  *  R  R  F  *  F  S  *  G  L  N  E  A  D  H  F  Y  Y  V  R  L  A  P  F  R  S  I  L  N  H  C  S  V  F  Q  T  R  S  R  S  P  H  C  F  F  Y  H  Y  R  V  P  Y  L  F  I  F  I  Y  A  Q  S  *  K  *  *  L  L  I  C  *  S  C  G  S  I  *  I  S  Y  G  V  F  D  W  C  *  F  V  V  V  G  I  R  C  G  M  R  S  T  G  Y  P  *  *  G  I  L  I  S  H  Q  I  I  *  K  A  S  T  Q  R  K  R  M  *  T  L  A  Q  R  A  R  G  *  R  G  E  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0189G15.1" strand="+"/>
                <serials PGL_serial="30" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="140087" stop="140635"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>546</number_coding_nucleotides>
                  <number_encoded_amino_acids>182</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TRRRRKEEEESPSLMAAASARVLLASRLADLSLKPHQHPPHLPSPFTHHLLIRPLLPSLSASTRRRTSVNCLISGVDGGGVSDDFVSTRKSGFGSEFSVIANMLKRIEPLDTSVISKGVSDSAKDSMKQTISTMLGLLPSDQFSITVRFSKHALDRLIVSSIITGYLISSFSYMHKVENSDC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 430 chains have been computed
$ 
$ memory statistics:
$ 1124320 bytes spliced alignments in total
$ 322 spliced alignments have been stored
$ 3491 bytes was the average size of a spliced alignment
$ 47136 bytes predicted gene locations in total
$ 30 predicted gene locations have been stored
$ 1571 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 476 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 10:00:22
-->
