<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 09:47:39"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0185P07-uslut/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0185P07-uslut/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U569484" ref_strand="+" ref_description="SGN-U569484 Tomato 200607#2 [32 ESTs aligned] (*GB) gi|157327160|emb|CAO14438.1| (e_value=7e-40) unnamed; (*ATH) AT5G46230.1 (e_value=1e-32) | Symbol: None | expressed protein, contains Pfam profile PF04398: Protein of unknown function, DUF538 | chr5:18759667-18760272 REVERSE | Aliases: MPL12.1, MPL12_1; ">
      <seq>tacngccggggnntcgcaaattcaaaattacaatcctcaccctcctcaaatcgcttaaaaaaaattcaaatctctgtgaaatcggaaaaaacatgtctcaagtaatcgcaagccaccgtgaaaatgccgaaatttacacagatccggtggtttgcaagcagaaatcacttgaactcctgaaggaaatcaacatgcctaatggtcttctcccacttgaagacattgtagaagtcggccgcaacgccgaaaccggattcgtgtggctgaaacagaagaaggcgaaagagcacaagtataagaagatcgggaagctcgtctggtacgatactgaggtgacggcgtttgtggagaatcgccggatgaagaagctcaccggcgtaaagagcaaggagatcctcatctgggttacgatttctgatatttcaatttccgatccggagtgtaagaagattaactttgctacccctactggactttctaggtcttttcctgtgtcggcttttgaagaggaggaagaagaagaggagaagaagtgaagctgaaggtttcaggggtattttaaggaattaataatgtgttcttttattttactagtactatttaaataattaaattactgtttttttttataatctattttaatcctatcctatgtaaccaaagttaaaaatgaaaatggaactatagtttatactggattaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0185P07.1" temp_strand="+" temp_description="C02HBa0185P07.1  AC215412.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0185P07 sequenced_by:kribb upload_account_name:korea">
        <position start="5746" stop="7032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6046" g_stop="6732" g_length="687"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="700" r_length="687" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="701" polyA_stop="715"/>
      <MATCH_line gen_id="C02HBa0185P07.1" gen_strand="+" ref_id="SGN-U569484" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0185P07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U569484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6046" e_stop="6732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCAAATTCAAAATTACAATCCTCACCCTCCTCAAATCGCTTAAAAAAAATTCAAATCTCTGTGAAATCGGAAAAAACATGTCTCAAGTAATCGCAAGCCACCGTGAAAATGCCGAAATTTACACAGATCCGGTGGTTTGCAAGCAGAAATCACTTGAACTCCTGAAGGAAATCAACATGCCTAATGGTCTTCTCCCACTTGAAGACATTGTAGAAGTCGGCCGCAACGCCGAAACCGGATTCGTGTGGCTGAAACAGAAGAAGGCGAAAGAGCACAAGTATAAGAAGATCGGGAAGCTCGTCTGGTACGATACTGAGGTGACGGCGTTTGTGGAGAATCGCCGGATGAAGAAGCTCACCGGCGTAAAGAGCAAGGAGATCCTCATCTGGGTTACGATTTCTGATATTTCAATTTCCGATCCGGAGTGTAAGAAGATTAACTTTGCTACCCCTACTGGACTTTCTAGGTCTTTTCCTGTGTCGGCTTTTGAAGAGGAGGAAGAAGAAGAGGAGAAGAAGTGAAGCTGAAGGTTTCAGGGGTATTTTAAGGAATTAATAATGTGTTCTTTTATTTTACTAGTACTATTTAAATAATTAAATTACTGTTTTTTTTTATAATCTATTTTAATCCTATCCTATGTAACCAAAGTTAAAAATGAAAATGGAACTATAGTTTATACTGGATT</genome_strand>
        <mrna_strand>TCGCAAATTCAAAATTACAATCCTCACCCTCCTCAAATCGCTTAAAAAAAATTCAAATCTCTGTGAAATCGGAAAAAACATGTCTCAAGTAATCGCAAGCCACCGTGAAAATGCCGAAATTTACACAGATCCGGTGGTTTGCAAGCAGAAATCACTTGAACTCCTGAAGGAAATCAACATGCCTAATGGTCTTCTCCCACTTGAAGACATTGTAGAAGTCGGCCGCAACGCCGAAACCGGATTCGTGTGGCTGAAACAGAAGAAGGCGAAAGAGCACAAGTATAAGAAGATCGGGAAGCTCGTCTGGTACGATACTGAGGTGACGGCGTTTGTGGAGAATCGCCGGATGAAGAAGCTCACCGGCGTAAAGAGCAAGGAGATCCTCATCTGGGTTACGATTTCTGATATTTCAATTTCCGATCCGGAGTGTAAGAAGATTAACTTTGCTACCCCTACTGGACTTTCTAGGTCTTTTCCTGTGTCGGCTTTTGAAGAGGAGGAAGAAGAAGAGGAGAAGAAGTGAAGCTGAAGGTTTCAGGGGTATTTTAAGGAATTAATAATGTGTTCTTTTATTTTACTAGTACTATTTAAATAATTAAATTACTGTTTTTTTTTATAATCTATTTTAATCCTATCCTATGTAACCAAAGTTAAAAATGAAAATGGAACTATAGTTTATACTGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U576977" ref_strand="+" ref_description="SGN-U576977 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|157339870|emb|CAO45547.1| (e_value=1e-125) unnamed; (*ATH) AT3G14290.1 (e_value=3e-125) | Symbol: None | 20S proteasome alpha subunit E2 (PAE2), identical to 20S proteasome subunit PAE2 GB:AAC32061 from (Arabidopsis thaliana) | chr3:4764164-4766593 FORWARD | Aliases: MLN21.1; (*SWP) sp|Q9M4T8|PSA5_SOYBN (e_value=1e-126) Proteasome subunit alpha type-5 OS=Glycine max GN=PAE1; ">
      <seq>gcaaaatctgaacaaagggtttttggatctgtagcaaaatttcaacaaagatgtttcttacaagaactgagtatgatagaggtgttaacactttctcgcctgaaggacgattgtttcaagttgaatatgctattgaagctatcaagttgggttcaactgcaattggattgaagactaaggaaggagttgttcttgctgtggagaagcgcattacttcaccacttctggagccaagcagtgtggagaaaattatggaaatcgacgagcatattggctgtgcaatgagtggattgatagctgatgcacgaacacttgtggaacatgcacgggttgaaactcagaaccatagattctcttatggcgagcccatgactgttgagtccactacccaagctctctgtgatttggcgttgcgatttggtgagggcgatgaagaatctatgtccaggccttttggtgtgtcccttctcattgctggtcatgatgagaatggtcccagcttgtactatactgatccttctggtacattctggcaatgcaatgctaaagctattgggtcaggttctgaaggtgctgatagctctttgcaggagcagtataacaaggaccttacccttaaagaggctgaaaccatagcactgtccattctcaagcaagtgatggaagagaaggtgactcccaataatgttgatattgcgagggtatctccaacttaccatctatactcaccatcggaggtggaagaggttatcagccgcctataagaaagcatgtgatcacgctcgttatgatatttttcttgtatgacaaaaacactttcttgttgctgcagccctggagcctggaggtcattggattgttttttccttcttccaaggctaggaattgattcagacaagtgttttctgtatgttcattacattatttgcttcaaggatttaagtccatctatatctcttgctgctttatgagttgggatttgttctgaaaataggagttttaaagtgttttgaaagcaagaggcaagtacgatactgtgtaggattatataaataggggtttacattttcttgaatgaaatatttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0185P07.1" temp_strand="+" temp_description="C02HBa0185P07.1  AC215412.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0185P07 sequenced_by:kribb upload_account_name:korea">
        <position start="10375" stop="16611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10674" g_stop="10737" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10738" i_stop="10843" i_length="106">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.756" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10844" g_stop="10925" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="146" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10926" i_stop="11038" i_length="113">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11039" g_stop="11119" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="227" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11120" i_stop="12091" i_length="972">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12092" g_stop="12205" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="341" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12206" i_stop="12303" i_length="98">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12304" g_stop="12405" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="443" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12406" i_stop="13576" i_length="1171">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="13577" g_stop="13635" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="502" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="13636" i_stop="15000" i_length="1365">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15001" g_stop="15103" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="605" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="15104" i_stop="15749" i_length="646">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="15750" g_stop="15815" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="671" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="15816" i_stop="15895" i_length="80">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15896" g_stop="16311" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="1087" r_length="416" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0185P07.1" gen_strand="+" ref_id="SGN-U576977" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1087</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0185P07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U576977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10674" e_stop="10737"/>
          <exon e_start="10844" e_stop="10925"/>
          <exon e_start="11039" e_stop="11119"/>
          <exon e_start="12092" e_stop="12205"/>
          <exon e_start="12304" e_stop="12405"/>
          <exon e_start="13577" e_stop="13635"/>
          <exon e_start="15001" e_stop="15103"/>
          <exon e_start="15750" e_stop="15815"/>
          <exon e_start="15896" e_stop="16311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAATCTGAACAAAGGGTTTTTGGATCTGTAGCAAAATTTCAACAAAGATGTTTCTTACAAGGTAAAATTTGCATTTGTTTGGTGCTTAATCTACTTTTTTTTTGTTCAATGAAATCGGAATTGAATGATTTTGTTTTCTTCCTGTATTTTGGAAATTGGGTATGAAGAACTGAGTATGATAGAGGTGTTAACACTTTCTCGCCTGAAGGACGATTGTTTCAAGTTGAATATGCTATTGAAGCTATCAAGGTAAATTCTTTGATTTTTGCTTCCTGTGTGAATTTTTTTTTGGGGGACTGAAAATAGCTGATGGGTGTTTTTTTTTTTTGGTTTTATGGTTTTGAAATTACGATTTTTTGAAGTTGGGTTCAACTGCAATTGGATTGAAGACTAAGGAAGGAGTTGTTCTTGCTGTGGAGAAGCGCATTACTTCACCACTTCTGGTTTGTAACACTTGTTTCCGATGTTTTTTTGTTACTTCTGTATGGTTTACTGATTATGTTCATGGGTTATGGTTGGATGGTAAGTTCAATTTTTCAGCAATAACATCTATAAGAAATGCTGGTAGAGCTTCACCGATGTAAATTGAAGTATGAATTTTGTGGGGCAGAGGATTGGGGAAATGATTGCTAATTGTTGGAATCTTGTAATTTTGTGAAAGGAGTTCTTCCCCCTCCGCAACACAACTCAACTTGTACATGTCTCTGCGTTTAACTATGTGGCTGCTCATTTTCCTTTGAAATTTTCTTAATTGACATTGACATCGACATTGGAAGCAGTGGGTTTTTTCTAAATTAAATTGTAAAAACATTGAATGGTCACTTTATGAGGAAACAATGGAGCATGTCTGAATATGGTTGGAGTTGTGGTTCATATGAAGAATGTTGGGGCGTTAACCTTAATTTCCTCTAACTCGATTAATGAAAGTTACAACTTCACTGATGGGAAAAAGTAAAACCCTTTTTGCCTCTCAAAAGGCAATGCCAACCCTATATGTCTGTATTCTGAAGTCTCTTTTCTAGTGTCACCATATCATTGGAGCCTGAACGTACTTGATTTTAGAAAAATCATTTGTGCTAACTATTAGTTGACACTGTTTGGTGCTTAGTATATCATTGGTAATACCTACATTTTAACAGTTAAACTTGGTGGTCTCTTTTGGGGCATCTGATGAAATTGAAATGAAACAGTTAAACTTGGTGGCAGAGATATCCATAGTAGGCTACACGGCTTATAGATCAAGAATTAGAAAAGCTACAGACCTATTTCCCTTTAATTGGTTGCTTGGCTATCACTCTATTTTGTGTACTCAGTTGGTTCATCTAAATAATAGAGAACATGCTATACGCTCGCCTCATAACTTCAGTTTATTTTCTGTATTATTCATTCATGACACCGTTTTGATATTCTTTTAGGAGCCAAGCAGTGTGGAGAAAATTATGGAAATCGACGAGCATATTGGCTGTGCAATGAGTGGATTGATAGCTGATGCACGAACACTTGTGGAACATGCACGGGTTGAAACTCAGGTATTTAGGATAACATCTCCAACCTTCAAGTATTTGTGTGATAGTGGTAAATTGCTGATTTTGTGGTGTTGTTTTGTCCTCTCTTCCCCTTTCAACAGAACCATAGATTCTCTTATGGCGAGCCCATGACTGTTGAGTCCACTACCCAAGCTCTCTGTGATTTGGCGTTGCGATTTGGTGAGGGCGATGAAGAATCTATGGTGAGATTCGTTTTACTTTAGTATAGTACTGTTTGTTTCTCTATGAACAACTATCTTTCTGTGAAAAATTAGTGGTGCCTTATTTTGTAGAAAGCATCTTTTCCATTTTCCAATATTATCTTTTGCTGTCCCTTGTTATTTTGACTAAAAAGTATTAGTTGGAACTAAACAGATGACTTTATATGAAGTGGAATTTAGATTTTAAGCTAGTTATGTTAATTTCATCAAGTGAATAAGTAAAATAAATATAAACCAGCAACTACTTCATGTGACATAAGGTGAAAATAAATATAATTAGTGATAGGTCCTTGTTCCCTTCGCTTTATGTTTCACTAAAGGACTTGTGCATGTATCAAGTGCTCTCGAACATTGCCTATGCTGACTTTAGAATGAAAAGGTAACGGGTCACTACATTTATCTCCTCCCCCCTCCAAAAAAGAGATCAGTGATCAGCATGAAGATTTTTAGGCAGTGATCATCTCTGTATGTGTCTGTTTCTCAATTTGTAGTTGTATTTCAAATGCTCTTGCATATGCCAGCTGGGTAGTGATAGATCTAGAGGCTGGCTGTTGAGTCTGAGATCCTCTTAGATGCTAGGACCTAGGATCATAGTTTATCAGCTATATAAGTGCATTTGCTCTTCTCTTTACATTCTATATTCTATGGAAAAATGATGCATGATACTCATGAACTTTGTTTGTAAAGAACTCATGAAGTTAGAGTGGTGATTCTATATGGTGTAAGCTGGACTGCTGGACAAAAGATATGCTTAGCCTGTCTGGTTATCTTGGACAAAAGGAAAGGGGAGAACGGAAGATGGCAAAGGGTTAATTATGATTTAACTAGTTAATTAAGTTGTTTATGGAATTACCTGGTTAATCATGATCATATTCTGTGGTGTGCATTTTGCTCTACTGACTGTCTTGTGCTGATCTAGTTTCTTCATTTCCTTTTTGTTTTATTTGATAACATATTCTAATAAGTTGGATGTCTGGAGATTATCAGTGTTGTTGATGAAGTTTGTCAGAAGAAATAGACATTCTTCCGTAGTTTCTACAGTTGACTTACTCATCAGCAGGATTAGATTTTCCCTTATTGTATGTTTTGAGTATTGTAAGGTCAGATCTCTTACCTTTATGTATTAATGGTCTATCTCGTTTGTTTTATGCAGTCCAGGCCTTTTGGTGTGTCCCTTCTCATTGCTGGTCATGATGAGAATGGTCCCAGCTTGTAAGTCTTTGCACCTCTTCTACGCTAGTATTGGAAACTATGATATTTTCTTTTCAATATTTTCTTCTCTTGGTATTGAATCAAGTCTGATAGAGCTGCCGGAATGTTATCTTTCAGAGAACTTCCTTCTTCTCCCAAATTTCTTTCGAATACTACTTTGACTTTGGCTAAGTTGGACTTATGCATATTGGATCTCGAGAAAACGATGTACAATATTTGACTAGATATTCCACTGCATCTCAGATGCATTAATACTAAATCTCATGGGAAAAAACCTTTACACTTTTTTAGACAACTCCTTTCCACTTATATGACCATGTTTTTTATAAATCTCATCAAATCACTCTAATCTACACAAATCATCTTAATATAGCATGGAACATCACTTCTAAAATTTTTATTCTATTTTTGTTAGATAATGAGCTTTTTTTAATGTAAATGAAAAATTCTATCTCAATTAGTTGAAAAATGCTTTCATATACATTGAATATTAAGCACTTAATATATTACTCCCTCTAGTTCATATTAAGTGAATTGTTGGGGTATGACACACACGTTAAGAAAAATATACAAGGATATAAAATCAAAGACTATTTTCCACTATTACCCTTTTGATTATTCCCAAATTTTTCTCCTAGAAAATGTGAAGTAGTTACGAACCTCATTAAATGAAGGGTAAATATAGAAAAAGTCCTAGCAATTCTCTTGAACTTTGAATACACTTCATTTAATTTGAACTATGAAAAAGGTACCAACAATTCACAACAGTCATTGGTCGTTGCGTATTGGCCTGAGCTCAACAAGGATGATTGTGTATTAGCCTACCTGTCATGGTTGTCACATTTGGTGTCTTATGTATTAGGCACTGGTTCACTTAAACCTACCTCTCCAAAATTACTAAAATGTTGCTCTAATATTATCTCCTAATCCCTTGTTATAGTCTTTTGAGCCAAGGGTCTATAAGGAAGAGCCTCTCTACCCTCCCCCCCCCCCCCACTAAGGTAGGGGTAAGGTCTACATACATACTATCTTCCTAGACCCTACTTGTGGGATTACAGTGGGGTATGTTGCTGCTGTTGTTATTGTTGTTAATGAATATTAAATACTGAAGAGGTCAAGAGATCACATTCCTGGAAATGATTCTACCAACTGGCCATGATCGATTGGGCTTTTGTGTGATGAGCTGCTAAAATCAGACTTTTGTCTATATTCCTAAGAGAATACTGGAAACAGAATTTCATAAGCATACTGTTAACATTACATAGTTTATTCAAGTGTTCGGCCTCTCATTACTTACTAACCTGATTGTGGGTATTAAGCAACATAATTTGTAGATACTGAATGTCGCCCAATTCTGATGTGCAGGTACTATACTGATCCTTCTGGTACATTCTGGCAATGCAATGCTAAAGCTATTGGGTCAGGTTCTGAAGGTGCTGATAGCTCTTTGCAGGAGCAGTATAACAAGGTATCTAGGTTTTTTTATTTTTCTAGTGAAACCGTGACCCGTAGTCCTAATTACAGTCCAGTCTGCAGCAGGCTGGAGGTAATGTTGCTAGTGGAAGATGTAATAATAGGTCCTGTTCCTTTTTTTATTCACCCTCATTTCAACTGTTTGGATGCTTGAATGCTGGTGAACTTCATGAGTTCCGCATAAAGTATCTTGGTGGAAGCCGAGAAGTAGAGGAGGATTCCCCTCCTTGTATTTTTGCCCTAAATAGCTCAGCTCAAACATGCTGTCCAACCTTATTAGTCCGAGTAGCTAGTTTGGTTGGTGATGCGGTCACCCACTTGTACGTTTTCAAATAAGCATGCTAGCCTTCACACCTCCGAAATTAGATGTTTGTGGAACAAGTATTCAAGAAATCTCGTGTTCTATCTTCGTAACTGTTGTCCAGTCTGCAGCAGCTTGGGGTTGTTTGATGCTTTCCGTTGCCTATTCAACCCCTAAGACCATTCCCCTCTTCTCTTCCTCCAATAGAGGGAATTAAATCAGTCACTTTTCACTCATAACATTAAAATTGTAGGTGACTATTTTTGTAACCGAAAAGCTGGAGTTTAGTTTTCATATGGTTCTTAAAGTTGATCTAAAGTCGATTATCTCCTTTCTGCAGGACCTTACCCTTAAAGAGGCTGAAACCATAGCACTGTCCATTCTCAAGCAAGTGATGGAAGAGAAGGTAAGCAATAAGCCTCATGACACTTGTATTTTCATGATTTCGTTCCTTGTTTCTGAGAAAGCTCCCCCTATTTGATTCAGGTGACTCCCAATAATGTTGATATTGCGAGGGTATCTCCAACTTACCATCTATACTCACCATCGGAGGTGGAAGAGGTTATCAGCCGCCTATAAGAAAGCATGTGATCACGCTCGTTATGATATTTTTCTTGTATGACAAAAACACTTTCTTGTTGCTGCAGCCCTGGAGCCTGGAGGTCATTGGATTGTTTTTTCCTTCTTCCAAGGCTAGGAATTGATTCAGACAAGTGTTTTCTGTATGTTCATTACATTATTTGCTTCAAGGATTTAAGTCCATCTATATCTCTTGCTGCTTTATGAGTTGGGATTTGTTCTGAAAATAGGAGTTTTAAAGTGTTTTGAAAGCAAGAGGCAAGTACGATACTGTGTAGGATTATATAAATAGGGGTTTACATTTTCTTGAATGAAATATTTCC</genome_strand>
        <mrna_strand>GCAAAATCTGAACAAAGGGTTTTTGGATCTGTAGCAAAATTTCAACAAAGATGTTTCTTACAAG..........................................................................................................AACTGAGTATGATAGAGGTGTTAACACTTTCTCGCCTGAAGGACGATTGTTTCAAGTTGAATATGCTATTGAAGCTATCAAG.................................................................................................................TTGGGTTCAACTGCAATTGGATTGAAGACTAAGGAAGGAGTTGTTCTTGCTGTGGAGAAGCGCATTACTTCACCACTTCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCCAAGCAGTGTGGAGAAAATTATGGAAATCGACGAGCATATTGGCTGTGCAATGAGTGGATTGATAGCTGATGCACGAACACTTGTGGAACATGCACGGGTTGAAACTCAG..................................................................................................AACCATAGATTCTCTTATGGCGAGCCCATGACTGTTGAGTCCACTACCCAAGCTCTCTGTGATTTGGCGTTGCGATTTGGTGAGGGCGATGAAGAATCTATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGGCCTTTTGGTGTGTCCCTTCTCATTGCTGGTCATGATGAGAATGGTCCCAGCTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTATACTGATCCTTCTGGTACATTCTGGCAATGCAATGCTAAAGCTATTGGGTCAGGTTCTGAAGGTGCTGATAGCTCTTTGCAGGAGCAGTATAACAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTTACCCTTAAAGAGGCTGAAACCATAGCACTGTCCATTCTCAAGCAAGTGATGGAAGAGAAG................................................................................GTGACTCCCAATAATGTTGATATTGCGAGGGTATCTCCAACTTACCATCTATACTCACCATCGGAGGTGGAAGAGGTTATCAGCCGCCTATAAGAAAGCATGTGATCACGCTCGTTATGATATTTTTCTTGTATGACAAAAACACTTTCTTGTTGCTGCAGCCCTGGAGCCTGGAGGTCATTGGATTGTTTTTTCCTTCTTCCAAGGCTAGGAATTGATTCAGACAAGTGTTTTCTGTATGTTCATTACATTATTTGCTTCAAGGATTTAAGTCCATCTATATCTCTTGCTGCTTTATGAGTTGGGATTTGTTCTGAAAATAGGAGTTTTAAAGTGTTTTGAAAGCAAGAGGCAAGTACGATACTGTGTAGGATTATATAAATAGGGGTTTACATTTTCTTGAATGAAATATTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U594737" ref_strand="-" ref_description="SGN-U594737 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>agggtgaaaccttagcactgtccattctcacgcaagtgatggaagagtagctgactcccattaatgttgatactgcgagggtatctctaacttaccatgtataattaccatcggaggtggaagaggttatcagcctcttataagaatgcatgtgatcacgctaaatatgatctgtttcttgtatgacaaaaacacttttttgttgctgcaaccctggaacctggaggtcattggaatgttttttccttctaccaaggctaggacttgattcagacaagtgttttctgtatgttcattacagtatttgcttcaaggaattaagtccatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0185P07.1" temp_strand="+" temp_description="C02HBa0185P07.1  AC215412.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0185P07 sequenced_by:kribb upload_account_name:korea">
        <position start="15466" stop="16474"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15766" g_stop="15815" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15816" i_stop="15895" i_length="80">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.964" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15896" g_stop="16174" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="329" r_length="279" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0185P07.1" gen_strand="+" ref_id="SGN-U594737" ref_strand="-">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>329</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0185P07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U594737" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="15766" e_stop="15815"/>
          <exon e_start="15896" e_stop="16174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCTGAAACCATAGCACTGTCCATTCTCAAGCAAGTGATGGAAGAGAAGGTAAGCAATAAGCCTCATGACACTTGTATTTTCATGATTTCGTTCCTTGTTTCTGAGAAAGCTCCCCCTATTTGATTCAGGTGACTCCCAATAATGTTGATATTGCGAGGGTATCTCCAACTTACCATCTATACTCACCATCGGAGGTGGAAGAGGTTATCAGCCGCCTATAAGAAAGCATGTGATCACGCTCGTTATGATATTTTTCTTGTATGACAAAAACACTTTCTTGTTGCTGCAGCCCTGGAGCCTGGAGGTCATTGGATTGTTTTTTCCTTCTTCCAAGGCTAGGAATTGATTCAGACAAGTGTTTTCTGTATGTTCATTACATTATTTGCTTCAAGGATTTAAGTCCATCT</genome_strand>
        <mrna_strand>AGGGTGAAACCTTAGCACTGTCCATTCTCACGCAAGTGATGGAAGAGTAG................................................................................CTGACTCCCATTAATGTTGATACTGCGAGGGTATCTCTAACTTACCATGTATAATTACCATCGGAGGTGGAAGAGGTTATCAGCCTCTTATAAGAATGCATGTGATCACGCTAAATATGATCTGTTTCTTGTATGACAAAAACACTTTTTTGTTGCTGCAACCCTGGAACCTGGAGGTCATTGGAATGTTTTTTCCTTCTACCAAGGCTAGGACTTGATTCAGACAAGTGTTTTCTGTATGTTCATTACAGTATTTGCTTCAAGGAATTAAGTCCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U572557" ref_strand="+" ref_description="SGN-U572557 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|18397313|ref|NP_564345.1| (e_value=1e-26) glycoside hydrolase family 47 [Arabidopsis thaliana]; (*ATH) AT1G30000.1 (e_value=1e-28) | Symbol: None | glycoside hydrolase family 47 protein, similar to GI:5579331 from (Homo sapiens); contains Pfam profile PF01532: Glycosyl hydrolase family 47 | chr1:10509195-10512452 REVERSE | Aliases: T1P2.10, T1P2_10; ">
      <seq>tggactaatttggtcgttccttcaaatgccatatctcatcactcttccatcgatggtcacctccggattccggcgacacccagtttaatattcatctggttctgtacaataatacactcctatatacgtgcacgcgccgctgtactatagtaggcaatacacacgcgtttacggctgctgtaaggcagagccaaattgagaatctgaagttgttgctcttttgttttgtatcgagaatcagacgatgtcgaaatcattgccctattcaatgaaagatgtgcactacgataacgccaagttcagacagcgatccgtatctcaggtaatttctcaggttctattaaccagtaatgggaaacgagattatttgaaatgtagcactgggaaacttctcgtgttactgatgcttggtggtttagcatatctagtactgactaataaaagtgctgtccatcccgtgtctgatggtatagcaaaaaatgatggatcaaaggaaggagaaaatctcatgactcatggaagtggtaaattcaggagattttggaggaaaccacctagacttccaccccggttatctcctgatgaaataattagtaggaatagatccattcaagagtccatgaaaagagaggagccagaatgggtggcaagacaacagaaggtgaaagatgcatttatccatgcctggtctggatacaaagcccatgccatgggttatgatgaacttatgcccttaagccatanaggggttaatggntttngnangtttgggancta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0185P07.1" temp_strand="+" temp_description="C02HBa0185P07.1  AC215412.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0185P07 sequenced_by:kribb upload_account_name:korea">
        <position start="25368" stop="30497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25668" g_stop="25989" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25990" i_stop="29743" i_length="3754">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29744" g_stop="30197" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="777" r_length="455" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0185P07.1" gen_strand="+" ref_id="SGN-U572557" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0185P07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U572557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25668" e_stop="25989"/>
          <exon e_start="29744" e_stop="30197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACTAATTTGGTCGTTCCTTCAAATGCCATATCTCATCACTCTTCCATCGATGGTCACCTCCGGATTCCGGCGACACCCAGTTTAATATTCATCTGGTTCTGTACAATAATACACTCCTATATACGTGCACGCGCCGCTGTACTATAGTAGGCAATACACACGCGTTTACGGCTGCTGTAAGGCAGAGCCAAATTGAGAATCTGAAGTTGTTGCTCTTTTGTTTTGTATCGAGAATCAGACGATGTCGAAATCATTGCCCTATTCAATGAAAGATGTGCACTACGATAACGCCAAGTTCAGACAGCGATCCGTATCTCAGGTCAGCTAGCTCAATCAGAATTCGTTCCTTTGAATCTTGTTTTTAATTTTTTTTGAATTTCGATCTCTGAACAGAGTAAGGATTAGTTTAGAAGTGCGCTGATTTGTTTTCTTCATAGAACAGCTTGGAAATAACCTGATTTGTCTATTTGCGTAGTTTGAGAGGAGGAAAAGGAGGCTTTTTGGTTATGAAATGTCGTTTTGCTAACTGAAAGATATGATCAGATAACTTTTTTTTTTTTTGTATTTTTTCTCTGATGTGAACTGAAGTATGCCCTGGTGAAAGTGTGGCTAAAATGGGAAATAATGTTCACAAGCCACTCAATTTGAGAAAGTAAGAGCCAGTTCGGAATACGAGAAATAAAAAAATATATGCAAGTCAAACATGGTTGTTCTTAAACTTGATTTGGTATATAGCTAGCATTGAGAGCTCCGTGACTGGTCAACCAATGATTGATAGGCCATTGATTTGAATATTAGATTGTCTAATTTTTGAAGGAGTCTCAAGTAAGCTGTTGAGCTAAGTAGTATACTATATTTTTATATTAATGTACCACTTTCCTTTTTGAGCTGAGTTCTCTTTTAAAGCCTTTTAACCATCGGCACTCTCATTCTGAAAGTTTTCGTTATGCCCCTCTTTTTGTGGTTTTGGCGGTGGGGTTCGGGGGGAGGATTTTAATATTTGGACTTGGTATGCAGTTTGTTACATGAAAGGGTGCTGCAACAGTGTTGTACTTACACGAAACCACCTTTTTCGATATAATTAACAAGTTTTATGTTGTGCATCTTAGTATCCGGACACCTTTAAAAGCGTTATTATCGTCTCAGCCTGTAAAGGCTACATAAGAAAAAGAGATAGCCAACTTTGGTTGAAGGTGGTGATAACTAAATTTTAGTTTCTATTTCAATTATAAGATTTGGACCCCATTGCCATGGGATAAATATAAGATATTACTGCTAACATATTTGAGAGAACTAAATTAAAAACCAATTAGAGTAGCTATGGATAAGACCATTGTTGTCTCTTACTAAACATTCCTTTCTTCTCAACCCCAAAGGTTAATCGGCGAATCTCTACCCTAAGGAGACATGATTCCTTTTGGTTATTGGTGGAAAGCTGGAGTTTGGCTAATGATTAGTGTATCATTTAATTCTTGTGCTTATTGATGGTGAACTCGATCAATTTTAAGACCTTGATCAGACCTGGACGAATTTGTGATTTGATTGTAAAACTCTGATATTCAGGAAACATATGCACAATACTAAAAAGAATTATAAAAGTCCAAAAAAATTACATCAAGAGAAGGTACTTCTGTTGGACTCTTGGTAAAGGATATGTGAAACCATTATTCAAAAGAAGCTTTACCTTTTCATAAAAAAACAATTGTACAAAAGAGGGAATGTGATATCAATATGCAGAATTTTCCTGGGAAGGGATCTTAATGTTCTATTCAGCTATCAGTCTTTTTCTAAATACTTCTCCGTGCGTCTTCTCTATTTTAATATGTATTCTCCATATTCTTTAGATGTTTATTGGATGAATGTACAAAAGAGGGAATGTGATATCAATATGCAGAATTTTCCTGGGAAGGGATCTTAATGTTCTATTCAGCTATCAGTCTTTTTCTAAATACTTCTCCGTGCGTCTTCTCTATTTTAATATGTATTCTCCATATTCTTTAGATGTTTATTGGATGAATTTGTTACACTCACTACCCTTGGCAGTGTTCATGTAATAGCCTAGTTCACTGATAGGTTTGGTTATATATTCATTAATCATCTACTTTGCTCCTTATAATAACCTTGAGTAACGGAATTGAGTTTTAAAGAGTTGTCCAGTTTAATTTCCTTCAGAGCTTAGTTGATAATCTAAGACATGATCAAAAGAAAGGAGGAAGTTGGAAATCTCGACTGGAAAGAGTGGTAATTGCTCACAGCTTTGCGTAGCGATTTGCTTACAACAGCATTAACCCCTTTAATATGGTCTGATTTGACTGTTCTAAAGAGTGTGAAAAAGTATTTCATTCACATATTGAGTTGTTCCTTTCTAATTAAGTCTGTTGCCATATATCTGAAGTTCATGATTCATGCCACGTAATAAGCGTCACTAATAAAGACGAAATAGGAAAAATATAAAAAATAATAATAAAATAACATAAAATTGTGATATAAAAAGTGTCATTTTGCCATTCATATTTGAATCTCAAATAAATTGGAGTTCTGAAGATTAACTTAAGGAATCAATATGATGGCAGACAGTTAAATATTCTTGAATATTTCAAATGGAAATTGCACCTCATAAGTTAGAAAGAGAGCAGTTTTCCATTTTCTCTCATATTATTGTCAATTCTGGCATATCTTATATCATGAATTCGAGTAGCTTGGATTTTTTCATAGAAATACGGAGTGCTTTGATGTAGTCTAAATAGTATATTTGGTGCCTTACAAAAGTTTTCTTTTCTTCTTGGTATGGGTAGTGTTGAGAATATCATTAACTAATAAAAGTGTGTTCTCTCTAATTTTAGAGAGAACACACTTTTATTAGTTCATGATACTCTCAACACACTCCTCACATGCGGACCTAATTTTTTTTCCATGGGTCAAACGTGTGAAAATTCTTTTTTAATTTGGGTGTGGAAGAATCCTTATAAAGATTTGGTAATTCTCCTCCCTTTGAGCTAGCTTTTGGGGTGTGAACTAAGCCTAATTTAACATGGTATGAGGGCCCCCAAAATCAAAATTGTTAATGCACCAAATGCGAAGCACTGGGCATGAAGTTGGGTGTTAAAGAATGACAAAAGTTCCACATTGGTGGTTAACAAGATGGGTGGACTCCTAATAAGGCTTGGGCAATCCTCTTCCATTTGAGTTAGCTTTTGAGGTGTGAGTTAGGACCAAGGCCTAACTTAACGGGCAGCAACCTTTATATAGTGTACTTATGGTGCATCGTTCCAGAGACTACTGAAGTCATACATCTCGTAAGGAGATTGACGGAGCAGTATAGGGAGTGGAAGAGGGAACATATGATGTTTGTTGACCTAGAAAAAGCTTTCGACAAAGTGGGTATTTGGATTGACTTATTTTAAGTAGCTTTCGACTTTTAAACTCTTTTTGTTTGTTTTGGAAGTGTTCGAAAAACACAAAAAGTGCTTTTAAGCATTTTTTTTTGGCTGAAAAAGAACAAAAAGAAGAGTCAAAAGCCAAAAAATGGGTGTTCCCAACTTATTGCTTTTAGCTTTTAACTTATATGCCACTTTAAAAAAGTCAATTCGAACATCCCCCAAGTCCCTTGGAGGGTTCTATGGAGTCGTTTGAAAGCTAGACGTGTACTTGCAGCTTACATTAGGGCGATTAAGGACAGATTCAATGGATCCAAGACCCGAGTGAGGACAGTGGGCTGAGACTCGGAGCACGTCAGTATTTGCCCACAATGTAGTGACCCTGACTTGTGACATTAATGACTTCAGGAACCAAATTATGTTGAATTTGCTATTTTACCTTTACTTAAATAATTTGTTTTTGTAGCACCTAAATGGCCATATATGGTGGGTTTTGCCTATAGCTTGCATATTAGAAGTGTGCTTTATCTCTGACTATCTTCCCTAGCACCAGTAATGCACATATAAATTCTTGCTTTTAAAATTGAGATAGCTTCCAGATCATTTTCATTCCTTGAAAGGTCTTAGTATTTCTGCAGCAGAATTTTGTAGTTTCTCTTGTATGCTGAAATTTTATAGTTCTGCTTATCTTTTCAGGTAATTTCTCAGGTTCTATTAACCAGTAATGGGAAACGAGATTATTTGAAATGTAGCACTGGGAAACTTCTCGTGTTACTGATGCTTGGTGGTTTAGCATATCTAGTACTGACTAATAAAAGTGCTGTCCATCCCGTGTCTGATGGTATAGCAAAAAATGATGGATCAAAGGAAGGAGAAAATCTCATGACTCATGGAAGTGGTAAATTCAGGAGATTTTGGAGGAAACCACCTAGACTTCCACCCCGGTTATCTCCTGATGAAATAATTAGTAGGAATAGATCCATTCAAGAGTCCATGAAAAGAGAGGAGCCAGAATGGGTGGCAAGACAACAGAAGGTGAAAGATGCATTTATCCATGCCTGGTCTGGATACAAAGCCCATGCCATGGGTTATGATGAACTTATGCCCTTAAGCCATAGAGGGGTTAATGG-TTTAGGAGGTTTGGGAGCTA</genome_strand>
        <mrna_strand>TGGACTAATTTGGTCGTTCCTTCAAATGCCATATCTCATCACTCTTCCATCGATGGTCACCTCCGGATTCCGGCGACACCCAGTTTAATATTCATCTGGTTCTGTACAATAATACACTCCTATATACGTGCACGCGCCGCTGTACTATAGTAGGCAATACACACGCGTTTACGGCTGCTGTAAGGCAGAGCCAAATTGAGAATCTGAAGTTGTTGCTCTTTTGTTTTGTATCGAGAATCAGACGATGTCGAAATCATTGCCCTATTCAATGAAAGATGTGCACTACGATAACGCCAAGTTCAGACAGCGATCCGTATCTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATTTCTCAGGTTCTATTAACCAGTAATGGGAAACGAGATTATTTGAAATGTAGCACTGGGAAACTTCTCGTGTTACTGATGCTTGGTGGTTTAGCATATCTAGTACTGACTAATAAAAGTGCTGTCCATCCCGTGTCTGATGGTATAGCAAAAAATGATGGATCAAAGGAAGGAGAAAATCTCATGACTCATGGAAGTGGTAAATTCAGGAGATTTTGGAGGAAACCACCTAGACTTCCACCCCGGTTATCTCCTGATGAAATAATTAGTAGGAATAGATCCATTCAAGAGTCCATGAAAAGAGAGGAGCCAGAATGGGTGGCAAGACAACAGAAGGTGAAAGATGCATTTATCCATGCCTGGTCTGGATACAAAGCCCATGCCATGGGTTATGATGAACTTATGCCCTTAAGCCATANAGGGGTTAATGGNTTTNGNANGTTTGGGANCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U582134" ref_strand="+" ref_description="SGN-U582134 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|18397313|ref|NP_564345.1| (e_value=4e-111) glycoside hydrolase family 47 [Arabidopsis thaliana]; (*ATH) AT1G30000.1 (e_value=3e-113) | Symbol: None | glycoside hydrolase family 47 protein, similar to GI:5579331 from (Homo sapiens); contains Pfam profile PF01532: Glycosyl hydrolase family 47 | chr1:10509195-10512452 REVERSE | Aliases: T1P2.10, T1P2_10; (*SWP) sp|Q9UKM7|MA1B1_HUMAN (e_value=1e-63) Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase OS=Homo sapiens GN=MAN1B1; ">
      <seq>cgttagtatcttatcaaagtgtggcttcagcagaaaggaactaacttttcatacttgtacgatatgtatgtcgaagcaattaaaggtgtcaggcaccttcttgttcgcaaatctgttccaaatggcttggtctttgtgggagaattgccatatgggcaagaaggtggtttcagtccaaagatggatcacctggtgtgtttccttcctggtaccctagcccttggtgctacaaaggggttgacaaaggaaagagctatgagagagaacttgctcacttttgaagatatggaaaacctaaagcttgctgaagatctggctaagacttgcgtggaaatatactcagtaacctctactggccttgctccagaaatagcttatttcaatattgagggaaattctgaaggtggtcctggtggtgggaacaaaagttcgaaatatttgaatgacataatcataaagcctgctgatcgtcacaatcttttgcgccctgaaactgttgaatcattgttttatctgtatcgcattactggcgattcaaagtatcgtgaatggggctggcaaatttttgaggcatttgagaagtacactaagattgattctggaggttacacttctcttgacgatgttactgttattcctccacaaagaagagacaagatggagacttttttcttgggtgaaacactcaaatacatctatttgctgttcggtaatagcaccacgatccctttggatgagtatgtattcaacacagaagctcatcctattccaataatttctagaagtgtatgattgatactttgcttgcaagaagaaatattttttccagtattagcggagattcagatgacccaagagaacatgtttcagcaatctcagatggcattttaattcgtttaagtcggttcattaggttggaagtgacctcatggaagcttattcacaaatgttccatttagatgaagctccctgaaatttccatctgaaacttctactcgagtgatacttgaggcggggaattttcgatgaacatcttgtttgtgtagtgcatacagagataattacaatttttattcaagtgttaaaggcttaaagctctatgttgttattcagggaaagaacaggatagtgtaatccttctgtagtaagttggaacttattcttgtaattgatgtattacatctacagctttgatttctccctttggagatacaaagattgaatcatttagcctaacatttacacaatgagatcaatatacaattgctttgaacctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0185P07.1" temp_strand="+" temp_description="C02HBa0185P07.1  AC215412.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0185P07 sequenced_by:kribb upload_account_name:korea">
        <position start="31722" stop="35028"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32020" g_stop="32211" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32212" i_stop="32791" i_length="580">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32792" g_stop="32989" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="390" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32990" i_stop="33756" i_length="767">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33757" g_stop="33905" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="539" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33906" i_stop="33988" i_length="83">
            <donor d_prob="0.820" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33989" g_stop="34728" g_length="740"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="1279" r_length="740" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0185P07.1" gen_strand="+" ref_id="SGN-U582134" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1279</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0185P07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U582134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32020" e_stop="32211"/>
          <exon e_start="32792" e_stop="32989"/>
          <exon e_start="33757" e_stop="33905"/>
          <exon e_start="33989" e_stop="34728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGAGTATCTTATCAAAGTGTGGCTTCAGCAGAAAGGAACTAACTTTTCATACTTGTACGATATGTATGTCGAAGCAATTAAAGGTGTCAGGCACCTTCTTGTTCGCAAATCTGTTCCAAATGGCTTGGTCTTTGTGGGAGAATTGCCATATGGGCAAGAAGGTGGTTTCAGTCCAAAGATGGATCACCTGGTATGCCATTTCTCTTATTATTCTTTTTCAAATATACTTCAGCATTGTAAAGTGAAAAGGTCAAAATGGGACTAACAGGGAATCAGCTGCACGATGCCACAGTTAGCCGCAGAATTCTATTTTTTCCTTTTGAAAAATAATTAATCTTCTTAAGCAACATGGAAATCCTTTCCTTGATATGTTAAGCCAATTCTCTATTATAAATTTCTTATGCTGATAGAACGTTTTTTTCTTTTCTTTTTCTCCAAATTCTTCATTCATTTTGCTCGCTCAAAGAGTTCACTAACATACTAAAATCACTGGCCGTAACTTTGATTTTCTTCTTCTGAGTGCATTGATTTATGATGGATTACAAGTTGCAGATATCATATAGCTTTACCTCACTAGCTAGGGTATACATTTCAGTAATGTGCTTTTTATTGAAGTATATAATCTCGAATCTTAATTAAAGAAATTAATCTTCTCCTGCCTCTTTCTTTTCTATTCACAATGAGACTTGTTTTCCTAAATGTATGAAAGCCGTATCTTAAATGTTGATGTCTGTTCTTATAAGTTTGATATCATTTGACATCATCCGCAGGTGTGTTTCCTTCCTGGTACCCTAGCCCTTGGTGCTACAAAGGGGTTGACAAAGGAAAGAGCTATGAGAGAGAACTTGCTCACTTTTGAAGATATGGAAAACCTAAAGCTTGCTGAAGATCTGGCTAAGACTTGCGTGGAAATATACTCAGTAACCTCTACTGGCCTTGCTCCAGAAATAGCTTATTTCAATATTGAGGTGAGTTGAAACATTTTTATTTCCTTCATCACTTTTGGCAACTATCATATTATGTAAGGTGGTGTTTTCAGTTTTCCTTTATCGGTCTTTTTTCTTTTCTTTTTTGAGGAAGGTGAGTTTTTGAAAGTTAAAAGAATTCTGTTGCATATCTTAAACTTCTGATCTGTGTTTTAACTCTTTTATGTCTAGATGTAACACGGATTAATCAGTTGTAAAAGATGTAAGAATTAGGGCCCTTGTGCATTGGCTTAATAAAAGTAGCTTCTAAGAGGGTGTTTGGATTGACTTAAAAGTTGGCCAAACCTACTTTTATGTCGGTTTTTTACTTTTGGAAGTATTTGACAAATATAAAAAATAATTTAAGATAAGTCAAAATTGAGTTAAATAAGTTGGGAAGGGTTTGACAGACTTAAAATAAGTTAAAAACCAAAAGTACGTTTTACCCTACTTTTTATTTTTTGACTTAAAAGTCATTCAGGTTGACTTTTTATTTTTGACGTATCAGCTACTTTTATTAAGCCAATCCAAAGGGGCTCTAAGTCAAAAATAAAAAGTCAAACTGAAATGAATCAAACCAATCTGGAAAACAATCAGAGTGAAAATGTGCCTATCTTGACTTGAACAATCTAATATCATCATTAGTGAGATGCAATATAAATTAATGATAGTGTTCATATGTCTACCCTGACTTGAAGTACTATTATGACATAATTGGAAAAATTCTTGCATCATAAATGTTTTTCTGGTATCTTGTTTTCTTCGAGCAGGGAAATTCTGAAGGTGGTCCTGGTGGTGGGAACAAAAGTTCGAAATATTTGAATGACATAATCATAAAGCCTGCTGATCGTCACAATCTTTTGCGCCCTGAAACTGTTGAATCATTGTTTTATCTGTATCGCATTACTGGCGATTCAAAGTATGTTCTTATTTTAAAGTTGTGTACTTTTGCTTTATGGGCTTGAACAACTAAGTTTGTTAACTTTGTGGACTCTTCTTCAGGTATCGTGAATGGGGCTGGCAAATTTTTGAGGCATTTGAGAAGTACACTAAGATTGATTCTGGAGGTTACACTTCTCTTGACGATGTTACTGTTATTCCTCCACAAAGAAGAGACAAGATGGAGACTTTTTTCTTGGGTGAAACACTCAAATACATCTATTTGCTGTTCGGTAATAGCACCACGATCCCTTTGGATGAGTATGTATTCAACACAGAAGCTCATCCTATTCCAATAATTTCTAGAAGTGTATGATTGATACTTTGCTTGCAAGAAGAAATATTTTTTCCAGTATTAGCGGAGATTCAGATGACCCAAGAGAACATGTTTCAGCAATCTCAGATGGCATTTTAATTCGTTTAAGTCGGTTCATTAGGTTGGAAGTGACCTCATGGAAGCTTATTCACAAATGTTCCATTTAGATGAAGCTCCCTGAAATTTCCATCTGAAACTTCTACTCGAGTGATACTTGAGGCGGGGAATTTTCGATGAACATCTTGTTTGTGTAGTGCATACAGAGATAATTACAATTTTTATTCAAGTGTTAAAGGCTTAAAGCTCTATGTTGTTATTCAGGGAAAGAACAGGATAGTGTAATCCTTCTGTAGTAAGTTGGAACTTATTCTTGTAATTGATGTATTACATCTACAGCTTTGATTTCTCCCTTTGGAGATACAAAGATTGAATCATTTAGCCTAACATTTACACAATGAGATCAATATACAATTGCTTTGAACCTCTT</genome_strand>
        <mrna_strand>CGTTAGTATCTTATCAAAGTGTGGCTTCAGCAGAAAGGAACTAACTTTTCATACTTGTACGATATGTATGTCGAAGCAATTAAAGGTGTCAGGCACCTTCTTGTTCGCAAATCTGTTCCAAATGGCTTGGTCTTTGTGGGAGAATTGCCATATGGGCAAGAAGGTGGTTTCAGTCCAAAGATGGATCACCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTTTCCTTCCTGGTACCCTAGCCCTTGGTGCTACAAAGGGGTTGACAAAGGAAAGAGCTATGAGAGAGAACTTGCTCACTTTTGAAGATATGGAAAACCTAAAGCTTGCTGAAGATCTGGCTAAGACTTGCGTGGAAATATACTCAGTAACCTCTACTGGCCTTGCTCCAGAAATAGCTTATTTCAATATTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAATTCTGAAGGTGGTCCTGGTGGTGGGAACAAAAGTTCGAAATATTTGAATGACATAATCATAAAGCCTGCTGATCGTCACAATCTTTTGCGCCCTGAAACTGTTGAATCATTGTTTTATCTGTATCGCATTACTGGCGATTCAAA...................................................................................GTATCGTGAATGGGGCTGGCAAATTTTTGAGGCATTTGAGAAGTACACTAAGATTGATTCTGGAGGTTACACTTCTCTTGACGATGTTACTGTTATTCCTCCACAAAGAAGAGACAAGATGGAGACTTTTTTCTTGGGTGAAACACTCAAATACATCTATTTGCTGTTCGGTAATAGCACCACGATCCCTTTGGATGAGTATGTATTCAACACAGAAGCTCATCCTATTCCAATAATTTCTAGAAGTGTATGATTGATACTTTGCTTGCAAGAAGAAATATTTTTTCCAGTATTAGCGGAGATTCAGATGACCCAAGAGAACATGTTTCAGCAATCTCAGATGGCATTTTAATTCGTTTAAGTCGGTTCATTAGGTTGGAAGTGACCTCATGGAAGCTTATTCACAAATGTTCCATTTAGATGAAGCTCCCTGAAATTTCCATCTGAAACTTCTACTCGAGTGATACTTGAGGCGGGGAATTTTCGATGAACATCTTGTTTGTGTAGTGCATACAGAGATAATTACAATTTTTATTCAAGTGTTAAAGGCTTAAAGCTCTATGTTGTTATTCAGGGAAAGAACAGGATAGTGTAATCCTTCTGTAGTAAGTTGGAACTTATTCTTGTAATTGATGTATTACATCTACAGCTTTGATTTCTCCCTTTGGAGATACAAAGATTGAATCATTTAGCCTAACATTTACACAATGAGATCAATATACAATTGCTTTGAACCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U567794" ref_strand="+" ref_description="SGN-U567794 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|861147|emb|CAA56175.1| (e_value=1e-135) K+ channel inward rectifying [Solanum tuberosum]; (*ATH) AT4G18290.1 (e_value=2e-95)  Symbol: None | similar to inward rectifying potassium channel (KAT1) [Arabidopsis thaliana] (TAIR:At5g46240.1); similar to K+ channel protein [Populus tremula x Populus tremuloides] (GB:CAC87141.1); similar to inward rectifying shaker-like K+ channe... ; (*SWP) sp|Q39128|KAT1_ARATH (e_value=1e-94) Potassium channel KAT1 OS=Arabidopsis thaliana GN=KAT1; ">
      <seq>aagcagcaatatataataatgtcattttcttatgctaaaaactgtttacaacggttctgtgtggaggagttccaaatggatacagaaaccacacatagtggttttttctctagtgatcttctaccatcacttggagctcgaatcaactacgctactaaactccgaagattcatcatttcgccttataatccacgttacaggtgttgggagatgtttctagttgttatggttatttacacagcttggatttctctgtttgaagttgcattcttgtcatacaagaaagatgatactctgttcattgttgacaacattgttgattgcttctttgctattgacattttacttactttcttcgtcgcgtatcttcatccagagtcttatcttcttgttgatgaacctaagaaaatagcaataaggtacttgtcaacatggttcattttcgatgtatgttctactgtaccattccaatcgttgatactcgtcttcacggatcataaagaaagcggaggagttggattcagattgctcagcatgctcagattatggcgtctcagacgagtcagtgccctgtttgcaagacttgagaaggatatccggttcaactacttctggacgcgatgtacaaagctcgtatcagtgacattgtttgcagttcactgtgctggatgcattaactatatgattgctgatagatatcctgatccgaaaaaganntggantggtgctgtatatccngatttcnagcaactaagtgttggggatagatacntaacttcattgtactggnctattgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0185P07.1" temp_strand="-" temp_description="C02HBa0185P07.1  AC215412.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0185P07 sequenced_by:kribb upload_account_name:korea">
        <position start="38040" stop="36303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37740" g_stop="37541" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37540" i_stop="37470" i_length="71">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37469" g_stop="37251" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="419" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37250" i_stop="37159" i_length="92">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.095" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37158" g_stop="36997" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="581" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36996" i_stop="36903" i_length="94">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.811" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36902" g_stop="36845" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="639" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36844" i_stop="36762" i_length="83">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.885" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36761" g_stop="36603" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="798" r_length="159" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0185P07.1" gen_strand="-" ref_id="SGN-U567794" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0185P07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U567794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37740" e_stop="37541"/>
          <exon e_start="37469" e_stop="37251"/>
          <exon e_start="37158" e_stop="36997"/>
          <exon e_start="36902" e_stop="36845"/>
          <exon e_start="36761" e_stop="36603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAGCAATATATAATAATGTCATTTTCTTATGCTAAAAACTGTTTACAACGGTTCTGTGTGGAGGAGTTCCAAATGGATACAGAAACCACACATAGTGGTTTTTTCTCTAGTGATCTTCTACCATCACTTGGAGCTCGAATCAACTACGCTACTAAACTCCGAAGATTCATCATTTCGCCTTATAATCCACGTTACAGGTAAGATAAAATGACTCTGATCGACTGATTGACATTTCCGCTTTTGAACTTAATGATTGTTATGATTTCAGGTGTTGGGAGATGTTTCTAGTTGTTATGGTTATTTACACAGCTTGGATTTCTCTGTTTGAAGTTGCATTCTTGTCATACAAGAAAGATGATACTCTGTTCATTGTTGACAACATTGTTGATTGCTTCTTTGCTATTGACATTTTACTTACTTTCTTCGTCGCGTATCTTCATCCAGAGTCTTATCTTCTTGTTGATGAACCTAAGAAAATAGCAATAAGGTATAGTTAAAGATTCAATCTTTATGTACATATATAAACAGAGGGAATGAGATTTTCTAAATTTCTAATTATATGTCAATGTGAGTAAACAGGTACTTGTCAACATGGTTCATTTTCGATGTATGTTCTACTGTACCATTCCAATCGTTGATACTCGTCTTCACGGATCATAAAGAAAGCGGAGGAGTTGGATTCAGATTGCTCAGCATGCTCAGATTATGGCGTCTCAGACGAGTCAGTGCCCTGTTTGCAAGGTCCAAAATACCACACTGTATTTGGTTTCTACATCATGAATTATGATCAATGCTAAAAAAACTCACATATATAAGCCGGTTTGCTTTCCTTCAGACTTGAGAAGGATATCCGGTTCAACTACTTCTGGACGCGATGTACAAAGCTCGTATCAGTAAGTCCTATCCATGCTTTAAAAAAAGATGATTTTAAAAAATATGTTTTTGACAAGCAACATGTGGTTTGTTTGGAGTTCAGGTGACATTGTTTGCAGTTCACTGTGCTGGATGCATTAACTATATGATTGCTGATAGATATCCTGATCCGAAAAAGACATGGATTGGTGCTGTATATCCAGATTTCAAGCAACTAAGTGTTGGGGATAGATACATAACTTCATTGTACTGGTCTATTGTA</genome_strand>
        <mrna_strand>AAGCAGCAATATATAATAATGTCATTTTCTTATGCTAAAAACTGTTTACAACGGTTCTGTGTGGAGGAGTTCCAAATGGATACAGAAACCACACATAGTGGTTTTTTCTCTAGTGATCTTCTACCATCACTTGGAGCTCGAATCAACTACGCTACTAAACTCCGAAGATTCATCATTTCGCCTTATAATCCACGTTACAG.......................................................................GTGTTGGGAGATGTTTCTAGTTGTTATGGTTATTTACACAGCTTGGATTTCTCTGTTTGAAGTTGCATTCTTGTCATACAAGAAAGATGATACTCTGTTCATTGTTGACAACATTGTTGATTGCTTCTTTGCTATTGACATTTTACTTACTTTCTTCGTCGCGTATCTTCATCCAGAGTCTTATCTTCTTGTTGATGAACCTAAGAAAATAGCAATAAG............................................................................................GTACTTGTCAACATGGTTCATTTTCGATGTATGTTCTACTGTACCATTCCAATCGTTGATACTCGTCTTCACGGATCATAAAGAAAGCGGAGGAGTTGGATTCAGATTGCTCAGCATGCTCAGATTATGGCGTCTCAGACGAGTCAGTGCCCTGTTTGCAAG..............................................................................................ACTTGAGAAGGATATCCGGTTCAACTACTTCTGGACGCGATGTACAAAGCTCGTATCA...................................................................................GTGACATTGTTTGCAGTTCACTGTGCTGGATGCATTAACTATATGATTGCTGATAGATATCCTGATCCGAAAAAGANNTGGANTGGTGCTGTATATCCNGATTTCNAGCAACTAAGTGTTGGGGATAGATACNTAACTTCATTGTACTGGNCTATTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U592141" ref_strand="+" ref_description="SGN-U592141 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>ctggcactgaatagatatcatcgcccaactcaaaatagaaatcaatatatatcaagnattatcataaaatcaactatgatactcaacatgtagcaacaacaagcactatatcattaacaattaccgtcacgttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagatttagtatattaacatctttcaagattcattatctttatttctcttgtgacggaacatgacattccgctccctcatattcattaatcctcttgtgtgaacacatgacactccgatcccctaaatctacatgacagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0185P07.1" temp_strand="-" temp_description="C02HBa0185P07.1  AC215412.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0185P07 sequenced_by:kribb upload_account_name:korea">
        <position start="56490" stop="55605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56190" g_stop="55863" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0185P07.1" gen_strand="-" ref_id="SGN-U592141" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0185P07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U592141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56190" e_stop="55863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCAAATTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAACCATGTTCATTAGATTGAGTATATTAATATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCAGTACGTGACACTCCGCTCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCTCTAAATTTACGTGTCGGTTC</genome_strand>
        <mrna_strand>CTGGCACTGAATAGATATCATCGCCCAACTCAAAATAGAAATCAATATATATCAAGNATTATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCACGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTTAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGACGGAACATGACATTCCGCTCCCTCATATTCATTAATCCTCTTGTGTGAACACATGACACTCCGATCCCCTAAATCTACATGACAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>7</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="6046" PGL_stop="6732"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6046" e_stop="6732"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6046" e_stop="6732" e_length="687"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6046" stop="6732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U569484" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGCAAATTCAAAATTACAATCCTCACCCTCCTCAAATCGCTTAAAAAAAATTCAAATCTCTGTGAAATCGGAAAAAACATGTCTCAAGTAATCGCAAGCCACCGTGAAAATGCCGAAATTTACACAGATCCGGTGGTTTGCAAGCAGAAATCACTTGAACTCCTGAAGGAAATCAACATGCCTAATGGTCTTCTCCCACTTGAAGACATTGTAGAAGTCGGCCGCAACGCCGAAACCGGATTCGTGTGGCTGAAACAGAAGAAGGCGAAAGAGCACAAGTATAAGAAGATCGGGAAGCTCGTCTGGTACGATACTGAGGTGACGGCGTTTGTGGAGAATCGCCGGATGAAGAAGCTCACCGGCGTAAAGAGCAAGGAGATCCTCATCTGGGTTACGATTTCTGATATTTCAATTTCCGATCCGGAGTGTAAGAAGATTAACTTTGCTACCCCTACTGGACTTTCTAGGTCTTTTCCTGTGTCGGCTTTTGAAGAGGAGGAAGAAGAAGAGGAGAAGAAGTGAAGCTGAAGGTTTCAGGGGTATTTTAAGGAATTAATAATGTGTTCTTTTATTTTACTAGTACTATTTAAATAATTAAATTACTGTTTTTTTTTATAATCTATTTTAATCCTATCCTATGTAACCAAAGTTAAAAATGAAAATGGAACTATAGTTTATACTGGATT</gDNA_template>
            <first_frame> S  Q  I  Q  N  Y  N  P  H  P  P  Q  I  A  *  K  K  F  K  S  L  *  N  R  K  K  H  V  S  S  N  R  K  P  P  *  K  C  R  N  L  H  R  S  G  G  L  Q  A  E  I  T  *  T  P  E  G  N  Q  H  A  *  W  S  S  P  T  *  R  H  C  R  S  R  P  Q  R  R  N  R  I  R  V  A  E  T  E  E  G  E  R  A  Q  V  *  E  D  R  E  A  R  L  V  R  Y  *  G  D  G  V  C  G  E  S  P  D  E  E  A  H  R  R  K  E  Q  G  D  P  H  L  G  Y  D  F  *  Y  F  N  F  R  S  G  V  *  E  D  *  L  C  Y  P  Y  W  T  F  *  V  F  S  C  V  G  F  *  R  G  G  R  R  R  G  E  E  V  K  L  K  V  S  G  V  F  *  G  I  N  N  V  F  F  Y  F  T  S  T  I  *  I  I  K  L  L  F  F  F  I  I  Y  F  N  P  I  L  C  N  Q  S  *  K  *  K  W  N  Y  S  L  Y  W  I </first_frame>
            <second_frame>  R  K  F  K  I  T  I  L  T  L  L  K  S  L  K  K  N  S  N  L  C  E  I  G  K  N  M  S  Q  V  I  A  S  H  R  E  N  A  E  I  Y  T  D  P  V  V  C  K  Q  K  S  L  E  L  L  K  E  I  N  M  P  N  G  L  L  P  L  E  D  I  V  E  V  G  R  N  A  E  T  G  F  V  W  L  K  Q  K  K  A  K  E  H  K  Y  K  K  I  G  K  L  V  W  Y  D  T  E  V  T  A  F  V  E  N  R  R  M  K  K  L  T  G  V  K  S  K  E  I  L  I  W  V  T  I  S  D  I  S  I  S  D  P  E  C  K  K  I  N  F  A  T  P  T  G  L  S  R  S  F  P  V  S  A  F  E  E  E  E  E  E  E  E  K  K  *  S  *  R  F  Q  G  Y  F  K  E  L  I  M  C  S  F  I  L  L  V  L  F  K  *  L  N  Y  C  F  F  L  *  S  I  L  I  L  S  Y  V  T  K  V  K  N  E  N  G  T  I  V  Y  T  G   </second_frame>
            <third_frame>   A  N  S  K  L  Q  S  S  P  S  S  N  R  L  K  K  I  Q  I  S  V  K  S  E  K  T  C  L  K  *  S  Q  A  T  V  K  M  P  K  F  T  Q  I  R  W  F  A  S  R  N  H  L  N  S  *  R  K  S  T  C  L  M  V  F  S  H  L  K  T  L  *  K  S  A  A  T  P  K  P  D  S  C  G  *  N  R  R  R  R  K  S  T  S  I  R  R  S  G  S  S  S  G  T  I  L  R  *  R  R  L  W  R  I  A  G  *  R  S  S  P  A  *  R  A  R  R  S  S  S  G  L  R  F  L  I  F  Q  F  P  I  R  S  V  R  R  L  T  L  L  P  L  L  D  F  L  G  L  F  L  C  R  L  L  K  R  R  K  K  K  R  R  R  S  E  A  E  G  F  R  G  I  L  R  N  *  *  C  V  L  L  F  Y  *  Y  Y  L  N  N  *  I  T  V  F  F  Y  N  L  F  *  S  Y  P  M  *  P  K  L  K  M  K  M  E  L  *  F  I  L  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0185P07.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6047" stop="6568"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>519</number_coding_nucleotides>
                  <number_encoded_amino_acids>173</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKFKITILTLLKSLKKNSNLCEIGKNMSQVIASHRENAEIYTDPVVCKQKSLELLKEINMPNGLLPLEDIVEVGRNAETGFVWLKQKKAKEHKYKKIGKLVWYDTEVTAFVENRRMKKLTGVKSKEILIWVTISDISISDPECKKINFATPTGLSRSFPVSAFEEEEEEEEKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="10674" PGL_stop="16311"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10674" e_stop="10737"/>
            <exon e_start="10844" e_stop="10925"/>
            <exon e_start="11039" e_stop="11119"/>
            <exon e_start="12092" e_stop="12205"/>
            <exon e_start="12304" e_stop="12405"/>
            <exon e_start="13577" e_stop="13635"/>
            <exon e_start="15001" e_stop="15103"/>
            <exon e_start="15750" e_stop="15815"/>
            <exon e_start="15896" e_stop="16311"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.948" acc_prob="0.756" e_score="0.984"/>
          <exon-intron don_prob="0.999" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.894" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.964" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="10674" e_stop="10737" e_length="64"/>
          </exon>
          <intron i_serial="1" don_prob="0.948" acc_prob="0.756">
            <gDNA_intron_boundary i_start="10738" i_stop="10843" i_length="106"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="10844" e_stop="10925" e_length="82"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.975">
            <gDNA_intron_boundary i_start="10926" i_stop="11038" i_length="113"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11039" e_stop="11119" e_length="81"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="11120" i_stop="12091" i_length="972"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="12092" e_stop="12205" e_length="114"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.894">
            <gDNA_intron_boundary i_start="12206" i_stop="12303" i_length="98"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="12304" e_stop="12405" e_length="102"/>
          </exon>
          <intron i_serial="5" don_prob="0.981" acc_prob="0.998">
            <gDNA_intron_boundary i_start="12406" i_stop="13576" i_length="1171"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="13577" e_stop="13635" e_length="59"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="13636" i_stop="15000" i_length="1365"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="15001" e_stop="15103" e_length="103"/>
          </exon>
          <intron i_serial="7" don_prob="0.990" acc_prob="0.980">
            <gDNA_intron_boundary i_start="15104" i_stop="15749" i_length="646"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="15750" e_stop="15815" e_length="66"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.964">
            <gDNA_intron_boundary i_start="15816" i_stop="15895" i_length="80"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="15896" e_stop="16311" e_length="416"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10674" stop="10737"/>
              <exon start="10844" stop="10925"/>
              <exon start="11039" stop="11119"/>
              <exon start="12092" stop="12205"/>
              <exon start="12304" stop="12405"/>
              <exon start="13577" stop="13635"/>
              <exon start="15001" stop="15103"/>
              <exon start="15750" stop="15815"/>
              <exon start="15896" stop="16311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U576977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15766" stop="15815"/>
              <exon start="15896" stop="16174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U594737" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAAAATCTGAACAAAGGGTTTTTGGATCTGTAGCAAAATTTCAACAAAGATGTTTCTTACAAG : AACTGAGTATGATAGAGGTGTTAACACTTTCTCGCCTGAAGGACGATTGTTTCAAGTTGAATATGCTATTGAAGCTATCAAG : TTGGGTTCAACTGCAATTGGATTGAAGACTAAGGAAGGAGTTGTTCTTGCTGTGGAGAAGCGCATTACTTCACCACTTCTG : GAGCCAAGCAGTGTGGAGAAAATTATGGAAATCGACGAGCATATTGGCTGTGCAATGAGTGGATTGATAGCTGATGCACGAACACTTGTGGAACATGCACGGGTTGAAACTCAG : AACCATAGATTCTCTTATGGCGAGCCCATGACTGTTGAGTCCACTACCCAAGCTCTCTGTGATTTGGCGTTGCGATTTGGTGAGGGCGATGAAGAATCTATG : TCCAGGCCTTTTGGTGTGTCCCTTCTCATTGCTGGTCATGATGAGAATGGTCCCAGCTT : GTACTATACTGATCCTTCTGGTACATTCTGGCAATGCAATGCTAAAGCTATTGGGTCAGGTTCTGAAGGTGCTGATAGCTCTTTGCAGGAGCAGTATAACAAG : GACCTTACCCTTAAAGAGGCTGAAACCATAGCACTGTCCATTCTCAAGCAAGTGATGGAAGAGAAG : GTGACTCCCAATAATGTTGATATTGCGAGGGTATCTCCAACTTACCATCTATACTCACCATCGGAGGTGGAAGAGGTTATCAGCCGCCTATAAGAAAGCATGTGATCACGCTCGTTATGATATTTTTCTTGTATGACAAAAACACTTTCTTGTTGCTGCAGCCCTGGAGCCTGGAGGTCATTGGATTGTTTTTTCCTTCTTCCAAGGCTAGGAATTGATTCAGACAAGTGTTTTCTGTATGTTCATTACATTATTTGCTTCAAGGATTTAAGTCCATCTATATCTCTTGCTGCTTTATGAGTTGGGATTTGTTCTGAAAATAGGAGTTTTAAAGTGTTTTGAAAGCAAGAGGCAAGTACGATACTGTGTAGGATTATATAAATAGGGGTTTACATTTTCTTGAATGAAATATTTCC</gDNA_template>
            <first_frame> T  K  S  E  Q  R  V  F  G  S  V  A  K  F  Q  Q  R  C  F  L  Q   : E  L  S  M  I  E  V  L  T  L  S  R  L  K  D  D  C  F  K  L  N  M  L  L  K  L  S  S :   W  V  Q  L  Q  L  D  *  R  L  R  K  E  L  F  L  L  W  R  S  A  L  L  H  H  F  W :   S  Q  A  V  W  R  K  L  W  K  S  T  S  I  L  A  V  Q  *  V  D  *  *  L  M  H  E  H  L  W  N  M  H  G  L  K  L  R :   T  I  D  S  L  M  A  S  P  *  L  L  S  P  L  P  K  L  S  V  I  W  R  C  D  L  V  R  A  M  K  N  L  C :   P  G  L  L  V  C  P  F  S  L  L  V  M  M  R  M  V  P  A   : C  T  I  L  I  L  L  V  H  S  G  N  A  M  L  K  L  L  G  Q  V  L  K  V  L  I  A  L  C  R  S  S  I  T  R :   T  L  P  L  K  R  L  K  P  *  H  C  P  F  S  S  K  *  W  K  R  R :   *  L  P  I  M  L  I  L  R  G  Y  L  Q  L  T  I  Y  T  H  H  R  R  W  K  R  L  S  A  A  Y  K  K  A  C  D  H  A  R  Y  D  I  F  L  V  *  Q  K  H  F  L  V  A  A  A  L  E  P  G  G  H  W  I  V  F  S  F  F  Q  G  *  E  L  I  Q  T  S  V  F  C  M  F  I  T  L  F  A  S  R  I  *  V  H  L  Y  L  L  L  L  Y  E  L  G  F  V  L  K  I  G  V  L  K  C  F  E  S  K  R  Q  V  R  Y  C  V  G  L  Y  K  *  G  F  T  F  S  *  M  K  Y  F  </first_frame>
            <second_frame>  Q  N  L  N  K  G  F  L  D  L  *  Q  N  F  N  K  D  V  S  Y  K  :  N  *  V  *  *  R  C  *  H  F  L  A  *  R  T  I  V  S  S  *  I  C  Y  *  S  Y  Q   : V  G  F  N  C  N  W  I  E  D  *  G  R  S  C  S  C  C  G  E  A  H  Y  F  T  T  S   : G  A  K  Q  C  G  E  N  Y  G  N  R  R  A  Y  W  L  C  N  E  W  I  D  S  *  C  T  N  T  C  G  T  C  T  G  *  N  S   : E  P  *  I  L  L  W  R  A  H  D  C  *  V  H  Y  P  S  S  L  *  F  G  V  A  I  W  *  G  R  *  R  I  Y   : V  Q  A  F  W  C  V  P  S  H  C  W  S  *  *  E  W  S  Q  L  :  V  L  Y  *  S  F  W  Y  I  L  A  M  Q  C  *  S  Y  W  V  R  F  *  R  C  *  *  L  F  A  G  A  V  *  Q   : G  P  Y  P  *  R  G  *  N  H  S  T  V  H  S  Q  A  S  D  G  R  E   : G  D  S  Q  *  C  *  Y  C  E  G  I  S  N  L  P  S  I  L  T  I  G  G  G  R  G  Y  Q  P  P  I  R  K  H  V  I  T  L  V  M  I  F  F  L  Y  D  K  N  T  F  L  L  L  Q  P  W  S  L  E  V  I  G  L  F  F  P  S  S  K  A  R  N  *  F  R  Q  V  F  S  V  C  S  L  H  Y  L  L  Q  G  F  K  S  I  Y  I  S  C  C  F  M  S  W  D  L  F  *  K  *  E  F  *  S  V  L  K  A  R  G  K  Y  D  T  V  *  D  Y  I  N  R  G  L  H  F  L  E  *  N  I  S </second_frame>
            <third_frame>   K  I  *  T  K  G  F  W  I  C  S  K  I  S  T  K  M  F  L  T  R :   T  E  Y  D  R  G  V  N  T  F  S  P  E  G  R  L  F  Q  V  E  Y  A  I  E  A  I  K  :  L  G  S  T  A  I  G  L  K  T  K  E  G  V  V  L  A  V  E  K  R  I  T  S  P  L  L  :  E  P  S  S  V  E  K  I  M  E  I  D  E  H  I  G  C  A  M  S  G  L  I  A  D  A  R  T  L  V  E  H  A  R  V  E  T  Q  :  N  H  R  F  S  Y  G  E  P  M  T  V  E  S  T  T  Q  A  L  C  D  L  A  L  R  F  G  E  G  D  E  E  S  M  :  S  R  P  F  G  V  S  L  L  I  A  G  H  D  E  N  G  P  S  L :   Y  Y  T  D  P  S  G  T  F  W  Q  C  N  A  K  A  I  G  S  G  S  E  G  A  D  S  S  L  Q  E  Q  Y  N  K  :  D  L  T  L  K  E  A  E  T  I  A  L  S  I  L  K  Q  V  M  E  E  K  :  V  T  P  N  N  V  D  I  A  R  V  S  P  T  Y  H  L  Y  S  P  S  E  V  E  E  V  I  S  R  L  *  E  S  M  *  S  R  S  L  *  Y  F  S  C  M  T  K  T  L  S  C  C  C  S  P  G  A  W  R  S  L  D  C  F  F  L  L  P  R  L  G  I  D  S  D  K  C  F  L  Y  V  H  Y  I  I  C  F  K  D  L  S  P  S  I  S  L  A  A  L  *  V  G  I  C  S  E  N  R  S  F  K  V  F  *  K  Q  E  A  S  T  I  L  C  R  I  I  *  I  G  V  Y  I  F  L  N  E  I  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0185P07.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10685" stop="10737"/>
                    <exon start="10844" stop="10925"/>
                    <exon start="11039" stop="11119"/>
                    <exon start="12092" stop="12205"/>
                    <exon start="12304" stop="12405"/>
                    <exon start="13577" stop="13635"/>
                    <exon start="15001" stop="15103"/>
                    <exon start="15750" stop="15815"/>
                    <exon start="15896" stop="15988"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>750</number_coding_nucleotides>
                  <number_encoded_amino_acids>250</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKGFWICSKISTKMFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLKEAETIALSILKQVMEEKVTPNNVDIARVSPTYHLYSPSEVEEVISRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="25668" PGL_stop="30197"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25668" e_stop="25989"/>
            <exon e_start="29744" e_stop="30197"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.976" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25668" e_stop="25989" e_length="322"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.976">
            <gDNA_intron_boundary i_start="25990" i_stop="29743" i_length="3754"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="29744" e_stop="30197" e_length="454"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25668" stop="25989"/>
              <exon start="29744" stop="30197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U572557" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGACTAATTTGGTCGTTCCTTCAAATGCCATATCTCATCACTCTTCCATCGATGGTCACCTCCGGATTCCGGCGACACCCAGTTTAATATTCATCTGGTTCTGTACAATAATACACTCCTATATACGTGCACGCGCCGCTGTACTATAGTAGGCAATACACACGCGTTTACGGCTGCTGTAAGGCAGAGCCAAATTGAGAATCTGAAGTTGTTGCTCTTTTGTTTTGTATCGAGAATCAGACGATGTCGAAATCATTGCCCTATTCAATGAAAGATGTGCACTACGATAACGCCAAGTTCAGACAGCGATCCGTATCTCAG : GTAATTTCTCAGGTTCTATTAACCAGTAATGGGAAACGAGATTATTTGAAATGTAGCACTGGGAAACTTCTCGTGTTACTGATGCTTGGTGGTTTAGCATATCTAGTACTGACTAATAAAAGTGCTGTCCATCCCGTGTCTGATGGTATAGCAAAAAATGATGGATCAAAGGAAGGAGAAAATCTCATGACTCATGGAAGTGGTAAATTCAGGAGATTTTGGAGGAAACCACCTAGACTTCCACCCCGGTTATCTCCTGATGAAATAATTAGTAGGAATAGATCCATTCAAGAGTCCATGAAAAGAGAGGAGCCAGAATGGGTGGCAAGACAACAGAAGGTGAAAGATGCATTTATCCATGCCTGGTCTGGATACAAAGCCCATGCCATGGGTTATGATGAACTTATGCCCTTAAGCCATAGAGGGGTTAATGGTTTAGGAGGTTTGGGAGCTA</gDNA_template>
            <first_frame> W  T  N  L  V  V  P  S  N  A  I  S  H  H  S  S  I  D  G  H  L  R  I  P  A  T  P  S  L  I  F  I  W  F  C  T  I  I  H  S  Y  I  R  A  R  A  A  V  L  *  *  A  I  H  T  R  L  R  L  L  *  G  R  A  K  L  R  I  *  S  C  C  S  F  V  L  Y  R  E  S  D  D  V  E  I  I  A  L  F  N  E  R  C  A  L  R  *  R  Q  V  Q  T  A  I  R  I  S   : G  N  F  S  G  S  I  N  Q  *  W  E  T  R  L  F  E  M  *  H  W  E  T  S  R  V  T  D  A  W  W  F  S  I  S  S  T  D  *  *  K  C  C  P  S  R  V  *  W  Y  S  K  K  *  W  I  K  G  R  R  K  S  H  D  S  W  K  W  *  I  Q  E  I  L  E  E  T  T  *  T  S  T  P  V  I  S  *  *  N  N  *  *  E  *  I  H  S  R  V  H  E  K  R  G  A  R  M  G  G  K  T  T  E  G  E  R  C  I  Y  P  C  L  V  W  I  Q  S  P  C  H  G  L  *  *  T  Y  A  L  K  P  *  R  G  *  W  F  R  R  F  G  S   </first_frame>
            <second_frame>  G  L  I  W  S  F  L  Q  M  P  Y  L  I  T  L  P  S  M  V  T  S  G  F  R  R  H  P  V  *  Y  S  S  G  S  V  Q  *  Y  T  P  I  Y  V  H  A  P  L  Y  Y  S  R  Q  Y  T  R  V  Y  G  C  C  K  A  E  P  N  *  E  S  E  V  V  A  L  L  F  C  I  E  N  Q  T  M  S  K  S  L  P  Y  S  M  K  D  V  H  Y  D  N  A  K  F  R  Q  R  S  V  S  Q  :  V  I  S  Q  V  L  L  T  S  N  G  K  R  D  Y  L  K  C  S  T  G  K  L  L  V  L  L  M  L  G  G  L  A  Y  L  V  L  T  N  K  S  A  V  H  P  V  S  D  G  I  A  K  N  D  G  S  K  E  G  E  N  L  M  T  H  G  S  G  K  F  R  R  F  W  R  K  P  P  R  L  P  P  R  L  S  P  D  E  I  I  S  R  N  R  S  I  Q  E  S  M  K  R  E  E  P  E  W  V  A  R  Q  Q  K  V  K  D  A  F  I  H  A  W  S  G  Y  K  A  H  A  M  G  Y  D  E  L  M  P  L  S  H  R  G  V  N  G  L  G  G  L  G  A  </second_frame>
            <third_frame>   D  *  F  G  R  S  F  K  C  H  I  S  S  L  F  H  R  W  S  P  P  D  S  G  D  T  Q  F  N  I  H  L  V  L  Y  N  N  T  L  L  Y  T  C  T  R  R  C  T  I  V  G  N  T  H  A  F  T  A  A  V  R  Q  S  Q  I  E  N  L  K  L  L  L  F  C  F  V  S  R  I  R  R  C  R  N  H  C  P  I  Q  *  K  M  C  T  T  I  T  P  S  S  D  S  D  P  Y  L  R :   *  F  L  R  F  Y  *  P  V  M  G  N  E  I  I  *  N  V  A  L  G  N  F  S  C  Y  *  C  L  V  V  *  H  I  *  Y  *  L  I  K  V  L  S  I  P  C  L  M  V  *  Q  K  M  M  D  Q  R  K  E  K  I  S  *  L  M  E  V  V  N  S  G  D  F  G  G  N  H  L  D  F  H  P  G  Y  L  L  M  K  *  L  V  G  I  D  P  F  K  S  P  *  K  E  R  S  Q  N  G  W  Q  D  N  R  R  *  K  M  H  L  S  M  P  G  L  D  T  K  P  M  P  W  V  M  M  N  L  C  P  *  A  I  E  G  L  M  V  *  E  V  W  E  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0185P07.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25867" stop="25989"/>
                    <exon start="29744" stop="30196"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>576</number_coding_nucleotides>
                  <number_encoded_amino_acids>192</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ESEVVALLFCIENQTMSKSLPYSMKDVHYDNAKFRQRSVSQVISQVLLTSNGKRDYLKCSTGKLLVLLMLGGLAYLVLTNKSAVHPVSDGIAKNDGSKEGENLMTHGSGKFRRFWRKPPRLPPRLSPDEIISRNRSIQESMKREEPEWVARQQKVKDAFIHAWSGYKAHAMGYDELMPLSHRGVNGLGGLGA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="32020" PGL_stop="34728"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32020" e_stop="32211"/>
            <exon e_start="32792" e_stop="32989"/>
            <exon e_start="33757" e_stop="33905"/>
            <exon e_start="33989" e_stop="34728"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.984" e_score="0.984"/>
          <exon-intron don_prob="0.999" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.820" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="32020" e_stop="32211" e_length="192"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.984">
            <gDNA_intron_boundary i_start="32212" i_stop="32791" i_length="580"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32792" e_stop="32989" e_length="198"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.993">
            <gDNA_intron_boundary i_start="32990" i_stop="33756" i_length="767"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="33757" e_stop="33905" e_length="149"/>
          </exon>
          <intron i_serial="3" don_prob="0.820" acc_prob="0.994">
            <gDNA_intron_boundary i_start="33906" i_stop="33988" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="33989" e_stop="34728" e_length="740"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32020" stop="32211"/>
              <exon start="32792" stop="32989"/>
              <exon start="33757" stop="33905"/>
              <exon start="33989" stop="34728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U582134" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATGAGTATCTTATCAAAGTGTGGCTTCAGCAGAAAGGAACTAACTTTTCATACTTGTACGATATGTATGTCGAAGCAATTAAAGGTGTCAGGCACCTTCTTGTTCGCAAATCTGTTCCAAATGGCTTGGTCTTTGTGGGAGAATTGCCATATGGGCAAGAAGGTGGTTTCAGTCCAAAGATGGATCACCTG : GTGTGTTTCCTTCCTGGTACCCTAGCCCTTGGTGCTACAAAGGGGTTGACAAAGGAAAGAGCTATGAGAGAGAACTTGCTCACTTTTGAAGATATGGAAAACCTAAAGCTTGCTGAAGATCTGGCTAAGACTTGCGTGGAAATATACTCAGTAACCTCTACTGGCCTTGCTCCAGAAATAGCTTATTTCAATATTGAG : GGAAATTCTGAAGGTGGTCCTGGTGGTGGGAACAAAAGTTCGAAATATTTGAATGACATAATCATAAAGCCTGCTGATCGTCACAATCTTTTGCGCCCTGAAACTGTTGAATCATTGTTTTATCTGTATCGCATTACTGGCGATTCAAA : GTATCGTGAATGGGGCTGGCAAATTTTTGAGGCATTTGAGAAGTACACTAAGATTGATTCTGGAGGTTACACTTCTCTTGACGATGTTACTGTTATTCCTCCACAAAGAAGAGACAAGATGGAGACTTTTTTCTTGGGTGAAACACTCAAATACATCTATTTGCTGTTCGGTAATAGCACCACGATCCCTTTGGATGAGTATGTATTCAACACAGAAGCTCATCCTATTCCAATAATTTCTAGAAGTGTATGATTGATACTTTGCTTGCAAGAAGAAATATTTTTTCCAGTATTAGCGGAGATTCAGATGACCCAAGAGAACATGTTTCAGCAATCTCAGATGGCATTTTAATTCGTTTAAGTCGGTTCATTAGGTTGGAAGTGACCTCATGGAAGCTTATTCACAAATGTTCCATTTAGATGAAGCTCCCTGAAATTTCCATCTGAAACTTCTACTCGAGTGATACTTGAGGCGGGGAATTTTCGATGAACATCTTGTTTGTGTAGTGCATACAGAGATAATTACAATTTTTATTCAAGTGTTAAAGGCTTAAAGCTCTATGTTGTTATTCAGGGAAAGAACAGGATAGTGTAATCCTTCTGTAGTAAGTTGGAACTTATTCTTGTAATTGATGTATTACATCTACAGCTTTGATTTCTCCCTTTGGAGATACAAAGATTGAATCATTTAGCCTAACATTTACACAATGAGATCAATATACAATTGCTTTGAACCTCTT</gDNA_template>
            <first_frame> Y  E  Y  L  I  K  V  W  L  Q  Q  K  G  T  N  F  S  Y  L  Y  D  M  Y  V  E  A  I  K  G  V  R  H  L  L  V  R  K  S  V  P  N  G  L  V  F  V  G  E  L  P  Y  G  Q  E  G  G  F  S  P  K  M  D  H  L  :  V  C  F  L  P  G  T  L  A  L  G  A  T  K  G  L  T  K  E  R  A  M  R  E  N  L  L  T  F  E  D  M  E  N  L  K  L  A  E  D  L  A  K  T  C  V  E  I  Y  S  V  T  S  T  G  L  A  P  E  I  A  Y  F  N  I  E  :  G  N  S  E  G  G  P  G  G  G  N  K  S  S  K  Y  L  N  D  I  I  I  K  P  A  D  R  H  N  L  L  R  P  E  T  V  E  S  L  F  Y  L  Y  R  I  T  G  D  S  K :   Y  R  E  W  G  W  Q  I  F  E  A  F  E  K  Y  T  K  I  D  S  G  G  Y  T  S  L  D  D  V  T  V  I  P  P  Q  R  R  D  K  M  E  T  F  F  L  G  E  T  L  K  Y  I  Y  L  L  F  G  N  S  T  T  I  P  L  D  E  Y  V  F  N  T  E  A  H  P  I  P  I  I  S  R  S  V  *  L  I  L  C  L  Q  E  E  I  F  F  P  V  L  A  E  I  Q  M  T  Q  E  N  M  F  Q  Q  S  Q  M  A  F  *  F  V  *  V  G  S  L  G  W  K  *  P  H  G  S  L  F  T  N  V  P  F  R  *  S  S  L  K  F  P  S  E  T  S  T  R  V  I  L  E  A  G  N  F  R  *  T  S  C  L  C  S  A  Y  R  D  N  Y  N  F  Y  S  S  V  K  G  L  K  L  Y  V  V  I  Q  G  K  N  R  I  V  *  S  F  C  S  K  L  E  L  I  L  V  I  D  V  L  H  L  Q  L  *  F  L  P  L  E  I  Q  R  L  N  H  L  A  *  H  L  H  N  E  I  N  I  Q  L  L  *  T  S  </first_frame>
            <second_frame>  M  S  I  L  S  K  C  G  F  S  R  K  E  L  T  F  H  T  C  T  I  C  M  S  K  Q  L  K  V  S  G  T  F  L  F  A  N  L  F  Q  M  A  W  S  L  W  E  N  C  H  M  G  K  K  V  V  S  V  Q  R  W  I  T  W :   C  V  S  F  L  V  P  *  P  L  V  L  Q  R  G  *  Q  R  K  E  L  *  E  R  T  C  S  L  L  K  I  W  K  T  *  S  L  L  K  I  W  L  R  L  A  W  K  Y  T  Q  *  P  L  L  A  L  L  Q  K  *  L  I  S  I  L  R :   E  I  L  K  V  V  L  V  V  G  T  K  V  R  N  I  *  M  T  *  S  *  S  L  L  I  V  T  I  F  C  A  L  K  L  L  N  H  C  F  I  C  I  A  L  L  A  I  Q   : S  I  V  N  G  A  G  K  F  L  R  H  L  R  S  T  L  R  L  I  L  E  V  T  L  L  L  T  M  L  L  L  F  L  H  K  E  E  T  R  W  R  L  F  S  W  V  K  H  S  N  T  S  I  C  C  S  V  I  A  P  R  S  L  W  M  S  M  Y  S  T  Q  K  L  I  L  F  Q  *  F  L  E  V  Y  D  *  Y  F  A  C  K  K  K  Y  F  F  Q  Y  *  R  R  F  R  *  P  K  R  T  C  F  S  N  L  R  W  H  F  N  S  F  K  S  V  H  *  V  G  S  D  L  M  E  A  Y  S  Q  M  F  H  L  D  E  A  P  *  N  F  H  L  K  L  L  L  E  *  Y  L  R  R  G  I  F  D  E  H  L  V  C  V  V  H  T  E  I  I  T  I  F  I  Q  V  L  K  A  *  S  S  M  L  L  F  R  E  R  T  G  *  C  N  P  S  V  V  S  W  N  L  F  L  *  L  M  Y  Y  I  Y  S  F  D  F  S  L  W  R  Y  K  D  *  I  I  *  P  N  I  Y  T  M  R  S  I  Y  N  C  F  E  P  L </second_frame>
            <third_frame>   *  V  S  Y  Q  S  V  A  S  A  E  R  N  *  L  F  I  L  V  R  Y  V  C  R  S  N  *  R  C  Q  A  P  S  C  S  Q  I  C  S  K  W  L  G  L  C  G  R  I  A  I  W  A  R  R  W  F  Q  S  K  D  G  S  P   : G  V  F  P  S  W  Y  P  S  P  W  C  Y  K  G  V  D  K  G  K  S  Y  E  R  E  L  A  H  F  *  R  Y  G  K  P  K  A  C  *  R  S  G  *  D  L  R  G  N  I  L  S  N  L  Y  W  P  C  S  R  N  S  L  F  Q  Y  *   : G  K  F  *  R  W  S  W  W  W  E  Q  K  F  E  I  F  E  *  H  N  H  K  A  C  *  S  S  Q  S  F  A  P  *  N  C  *  I  I  V  L  S  V  S  H  Y  W  R  F  K  :  V  S  *  M  G  L  A  N  F  *  G  I  *  E  V  H  *  D  *  F  W  R  L  H  F  S  *  R  C  Y  C  Y  S  S  T  K  K  R  Q  D  G  D  F  F  L  G  *  N  T  Q  I  H  L  F  A  V  R  *  *  H  H  D  P  F  G  *  V  C  I  Q  H  R  S  S  S  Y  S  N  N  F  *  K  C  M  I  D  T  L  L  A  R  R  N  I  F  S  S  I  S  G  D  S  D  D  P  R  E  H  V  S  A  I  S  D  G  I  L  I  R  L  S  R  F  I  R  L  E  V  T  S  W  K  L  I  H  K  C  S  I  *  M  K  L  P  E  I  S  I  *  N  F  Y  S  S  D  T  *  G  G  E  F  S  M  N  I  L  F  V  *  C  I  Q  R  *  L  Q  F  L  F  K  C  *  R  L  K  A  L  C  C  Y  S  G  K  E  Q  D  S  V  I  L  L  *  *  V  G  T  Y  S  C  N  *  C  I  T  S  T  A  L  I  S  P  F  G  D  T  K  I  E  S  F  S  L  T  F  T  Q  *  D  Q  Y  T  I  A  L  N  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0185P07.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32020" stop="32211"/>
                    <exon start="32792" stop="32989"/>
                    <exon start="33757" stop="33905"/>
                    <exon start="33989" stop="34241"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>789</number_coding_nucleotides>
                  <number_encoded_amino_acids>263</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YEYLIKVWLQQKGTNFSYLYDMYVEAIKGVRHLLVRKSVPNGLVFVGELPYGQEGGFSPKMDHLVCFLPGTLALGATKGLTKERAMRENLLTFEDMENLKLAEDLAKTCVEIYSVTSTGLAPEIAYFNIEGNSEGGPGGGNKSSKYLNDIIIKPADRHNLLRPETVESLFYLYRITGDSKYREWGWQIFEAFEKYTKIDSGGYTSLDDVTVIPPQRRDKMETFFLGETLKYIYLLFGNSTTIPLDEYVFNTEAHPIPIISRSV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="37740" PGL_stop="36603"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37740" e_stop="37541"/>
            <exon e_start="37469" e_stop="37251"/>
            <exon e_start="37158" e_stop="36997"/>
            <exon e_start="36902" e_stop="36845"/>
            <exon e_start="36761" e_stop="36603"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.915" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.095" e_score="1.000"/>
          <exon-intron don_prob="0.898" acc_prob="0.811" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.885" e_score="1.000"/>
          <exon-only e_score="0.956"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37740" e_stop="37541" e_length="200"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.915">
            <gDNA_intron_boundary i_start="37540" i_stop="37470" i_length="71"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37469" e_stop="37251" e_length="219"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.095">
            <gDNA_intron_boundary i_start="37250" i_stop="37159" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="37158" e_stop="36997" e_length="162"/>
          </exon>
          <intron i_serial="3" don_prob="0.898" acc_prob="0.811">
            <gDNA_intron_boundary i_start="36996" i_stop="36903" i_length="94"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="36902" e_stop="36845" e_length="58"/>
          </exon>
          <intron i_serial="4" don_prob="0.978" acc_prob="0.885">
            <gDNA_intron_boundary i_start="36844" i_stop="36762" i_length="83"/>
          </intron>
          <exon e_serial="5" e_score="0.956">
            <gDNA_exon_boundary e_start="36761" e_stop="36603" e_length="159"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37740" stop="37541"/>
              <exon start="37469" stop="37251"/>
              <exon start="37158" stop="36997"/>
              <exon start="36902" stop="36845"/>
              <exon start="36761" stop="36603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567794" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGCAGCAATATATAATAATGTCATTTTCTTATGCTAAAAACTGTTTACAACGGTTCTGTGTGGAGGAGTTCCAAATGGATACAGAAACCACACATAGTGGTTTTTTCTCTAGTGATCTTCTACCATCACTTGGAGCTCGAATCAACTACGCTACTAAACTCCGAAGATTCATCATTTCGCCTTATAATCCACGTTACAG : GTGTTGGGAGATGTTTCTAGTTGTTATGGTTATTTACACAGCTTGGATTTCTCTGTTTGAAGTTGCATTCTTGTCATACAAGAAAGATGATACTCTGTTCATTGTTGACAACATTGTTGATTGCTTCTTTGCTATTGACATTTTACTTACTTTCTTCGTCGCGTATCTTCATCCAGAGTCTTATCTTCTTGTTGATGAACCTAAGAAAATAGCAATAAG : GTACTTGTCAACATGGTTCATTTTCGATGTATGTTCTACTGTACCATTCCAATCGTTGATACTCGTCTTCACGGATCATAAAGAAAGCGGAGGAGTTGGATTCAGATTGCTCAGCATGCTCAGATTATGGCGTCTCAGACGAGTCAGTGCCCTGTTTGCAAG : ACTTGAGAAGGATATCCGGTTCAACTACTTCTGGACGCGATGTACAAAGCTCGTATCA : GTGACATTGTTTGCAGTTCACTGTGCTGGATGCATTAACTATATGATTGCTGATAGATATCCTGATCCGAAAAAGACATGGATTGGTGCTGTATATCCAGATTTCAAGCAACTAAGTGTTGGGGATAGATACATAACTTCATTGTACTGGTCTATTGTA</gDNA_template>
            <first_frame> K  Q  Q  Y  I  I  M  S  F  S  Y  A  K  N  C  L  Q  R  F  C  V  E  E  F  Q  M  D  T  E  T  T  H  S  G  F  F  S  S  D  L  L  P  S  L  G  A  R  I  N  Y  A  T  K  L  R  R  F  I  I  S  P  Y  N  P  R  Y  R :   C  W  E  M  F  L  V  V  M  V  I  Y  T  A  W  I  S  L  F  E  V  A  F  L  S  Y  K  K  D  D  T  L  F  I  V  D  N  I  V  D  C  F  F  A  I  D  I  L  L  T  F  F  V  A  Y  L  H  P  E  S  Y  L  L  V  D  E  P  K  K  I  A  I  R :   Y  L  S  T  W  F  I  F  D  V  C  S  T  V  P  F  Q  S  L  I  L  V  F  T  D  H  K  E  S  G  G  V  G  F  R  L  L  S  M  L  R  L  W  R  L  R  R  V  S  A  L  F  A  R :   L  E  K  D  I  R  F  N  Y  F  W  T  R  C  T  K  L  V  S  :  V  T  L  F  A  V  H  C  A  G  C  I  N  Y  M  I  A  D  R  Y  P  D  P  K  K  T  W  I  G  A  V  Y  P  D  F  K  Q  L  S  V  G  D  R  Y  I  T  S  L  Y  W  S  I  V </first_frame>
            <second_frame>  S  S  N  I  *  *  C  H  F  L  M  L  K  T  V  Y  N  G  S  V  W  R  S  S  K  W  I  Q  K  P  H  I  V  V  F  S  L  V  I  F  Y  H  H  L  E  L  E  S  T  T  L  L  N  S  E  D  S  S  F  R  L  I  I  H  V  T   : G  V  G  R  C  F  *  L  L  W  L  F  T  Q  L  G  F  L  C  L  K  L  H  S  C  H  T  R  K  M  I  L  C  S  L  L  T  T  L  L  I  A  S  L  L  L  T  F  Y  L  L  S  S  S  R  I  F  I  Q  S  L  I  F  L  L  M  N  L  R  K  *  Q  *   : G  T  C  Q  H  G  S  F  S  M  Y  V  L  L  Y  H  S  N  R  *  Y  S  S  S  R  I  I  K  K  A  E  E  L  D  S  D  C  S  A  C  S  D  Y  G  V  S  D  E  S  V  P  C  L  Q   : D  L  R  R  I  S  G  S  T  T  S  G  R  D  V  Q  S  S  Y  Q :   *  H  C  L  Q  F  T  V  L  D  A  L  T  I  *  L  L  I  D  I  L  I  R  K  R  H  G  L  V  L  Y  I  Q  I  S  S  N  *  V  L  G  I  D  T  *  L  H  C  T  G  L  L   </second_frame>
            <third_frame>   A  A  I  Y  N  N  V  I  F  L  C  *  K  L  F  T  T  V  L  C  G  G  V  P  N  G  Y  R  N  H  T  *  W  F  F  L  *  *  S  S  T  I  T  W  S  S  N  Q  L  R  Y  *  T  P  K  I  H  H  F  A  L  *  S  T  L  Q  :  V  L  G  D  V  S  S  C  Y  G  Y  L  H  S  L  D  F  S  V  *  S  C  I  L  V  I  Q  E  R  *  Y  S  V  H  C  *  Q  H  C  *  L  L  L  C  Y  *  H  F  T  Y  F  L  R  R  V  S  S  S  R  V  L  S  S  C  *  *  T  *  E  N  S  N  K  :  V  L  V  N  M  V  H  F  R  C  M  F  Y  C  T  I  P  I  V  D  T  R  L  H  G  S  *  R  K  R  R  S  W  I  Q  I  A  Q  H  A  Q  I  M  A  S  Q  T  S  Q  C  P  V  C  K  :  T  *  E  G  Y  P  V  Q  L  L  L  D  A  M  Y  K  A  R  I   : S  D  I  V  C  S  S  L  C  W  M  H  *  L  Y  D  C  *  *  I  S  *  S  E  K  D  M  D  W  C  C  I  S  R  F  Q  A  T  K  C  W  G  *  I  H  N  F  I  V  L  V  Y  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0185P07.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37740" stop="37541"/>
                    <exon start="37469" stop="37251"/>
                    <exon start="37158" stop="36997"/>
                    <exon start="36902" stop="36845"/>
                    <exon start="36761" stop="36603"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>798</number_coding_nucleotides>
                  <number_encoded_amino_acids>266</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KQQYIIMSFSYAKNCLQRFCVEEFQMDTETTHSGFFSSDLLPSLGARINYATKLRRFIISPYNPRYRCWEMFLVVMVIYTAWISLFEVAFLSYKKDDTLFIVDNIVDCFFAIDILLTFFVAYLHPESYLLVDEPKKIAIRYLSTWFIFDVCSTVPFQSLILVFTDHKESGGVGFRLLSMLRLWRLRRVSALFARLEKDIRFNYFWTRCTKLVSVTLFAVHCAGCINYMIADRYPDPKKTWIGAVYPDFKQLSVGDRYITSLYWSIV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="56190" PGL_stop="55863"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56190" e_stop="55863"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="56190" e_stop="55863" e_length="328"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56190" stop="55863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592141" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCAAATTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAACCATGTTCATTAGATTGAGTATATTAATATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCAGTACGTGACACTCCGCTCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCTCTAAATTTACGTGTCGGTTC</gDNA_template>
            <first_frame> R  V  L  S  R  Y  H  R  P  T  Q  N  R  N  Q  Y  I  P  S  N  I  I  K  S  T  M  I  L  N  M  *  Q  Q  Q  A  L  Y  H  *  Q  L  P  S  N  S  H  M  R  T  Q  A  S  I  P  Y  S  F  G  N  H  V  H  *  I  E  Y  I  N  I  F  Q  D  S  L  S  L  F  L  L  C  Q  Y  V  T  L  R  S  L  I  F  I  N  P  L  V  S  V  R  D  T  P  I  L  *  I  Y  V  S  V  </first_frame>
            <second_frame>  G  Y  *  V  D  I  I  G  Q  L  K  I  E  I  N  I  Y  Q  V  I  S  *  N  Q  L  *  Y  S  T  C  S  N  N  K  H  Y  I  I  N  N  Y  R  Q  I  H  T  *  G  L  K  P  Q  Y  H  T  H  L  G  T  M  F  I  R  L  S  I  L  I  S  F  K  I  H  Y  L  Y  F  S  C  V  S  T  *  H  S  A  P  S  Y  S  L  I  L  L  C  R  Y  V  T  L  R  S  S  K  F  T  C  R  F </second_frame>
            <third_frame>   G  T  E  *  I  S  S  A  N  S  K  *  K  S  I  Y  T  K  *  Y  H  K  I  N  Y  D  T  Q  H  V  A  T  T  S  T  I  S  L  T  I  T  V  K  F  T  H  E  D  S  S  L  N  T  I  L  I  W  E  P  C  S  L  D  *  V  Y  *  Y  L  S  R  F  I  I  F  I  S  L  V  S  V  R  D  T  P  L  P  H  I  H  *  S  S  C  V  G  T  *  H  S  D  P  L  N  L  R  V  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0185P07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 42 chains have been computed
$ 
$ memory statistics:
$ 14712 bytes spliced alignments in total
$ 7 spliced alignments have been stored
$ 2101 bytes was the average size of a spliced alignment
$ 11920 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 1986 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 48 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 09:48:20
-->
